HHsearch alignment for GI: 254781179 and conserved domain: pfam02786

>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.98  E-value=7.5e-32  Score=224.32  Aligned_cols=189  Identities=20%  Similarity=0.331  Sum_probs=145.7

Q ss_pred             CCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCC----CC
Q ss_conf             500100002121000012132--02220--00122105862564324776421143259899999886300366----88
Q gi|254781179|r   92 DKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HG  163 (300)
Q Consensus        92 dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~----~~  163 (300)
T Consensus         1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~   80 (211)
T pfam02786         1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN   80 (211)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98999999998698919987888799999999999859978997377789987512412778999999998751431699


Q ss_pred             CCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             54223335788-45788731444420022025543333110000112222458652-11666554444444577534876
Q gi|254781179|r  164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR  241 (300)
Q Consensus       164 ~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~  241 (300)
T Consensus        81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~----~~~~~-~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~  155 (211)
T pfam02786        81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNREC----SDQRR-TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYV  155 (211)
T ss_pred             CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEE----EEECC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf             83899740477658999999827998999996332----25033-58444681799999999999999999987526442


Q ss_pred             CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf             457999999768983999974726588822389999998399989999
Q gi|254781179|r  242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL  289 (300)
Q Consensus       242 g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li  289 (300)
T Consensus       156 G~~~vef~~~~~~~~~~~iEvNpR~~~~--~~--~t~~~tg~~l~~~~  199 (211)
T pfam02786       156 GAGTVEFALDPFSGEYYFIEMNTRLQVS--HA--LAEKATGYDLAKEA  199 (211)
T ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCH--HH--HHHHHHCCCHHHHH
T ss_conf             3324789996799959999670896834--77--88998794899999