HHsearch alignment for GI: 254781179 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.98 E-value=7.5e-32 Score=224.32 Aligned_cols=189 Identities=20% Similarity=0.331 Sum_probs=145.7
Q ss_pred CCHHCCCCCCCCEEECCCEEE--ECCCC--CHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCC----CC
Q ss_conf 500100002121000012132--02220--00122105862564324776421143259899999886300366----88
Q gi|254781179|r 92 DKMRSKQVVSSCGVPVCPSIL--VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HG 163 (300)
Q Consensus 92 dK~~~k~~l~~~gIptp~~~~--~~~~~--~~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~----~~ 163 (300)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred CCCCCCCCCCC-CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 54223335788-45788731444420022025543333110000112222458652-11666554444444577534876
Q gi|254781179|r 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241 (300)
Q Consensus 164 ~~vlVEefI~G-~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~ 241 (300)
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~----~~~~~-~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~ 155 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNREC----SDQRR-TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYV 155 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEE----EEECC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 83899740477658999999827998999996332----25033-58444681799999999999999999987526442
Q ss_pred CEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 457999999768983999974726588822389999998399989999
Q gi|254781179|r 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 (300)
Q Consensus 242 g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li 289 (300)
T Consensus 156 G~~~vef~~~~~~~~~~~iEvNpR~~~~--~~--~t~~~tg~~l~~~~ 199 (211)
T pfam02786 156 GAGTVEFALDPFSGEYYFIEMNTRLQVS--HA--LAEKATGYDLAKEA 199 (211)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCH--HH--HHHHHHCCCHHHHH
T ss_conf 3324789996799959999670896834--77--88998794899999