HHsearch alignment for GI: 254781179 and conserved domain: pfam06849
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=94.92 E-value=0.048 Score=33.17 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCC------------------HHHHHH------HCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 9999999999987988999615865------------------688887------5399899992548843431023566
Q gi|254781179|r 17 SSGKACASALEDAGFKVSQIDVDRS------------------VGLVLA------HLKPDLAFNVLHGNFGEDGLVQAIL 72 (300)
Q Consensus 17 ~S~~~i~~aL~~~g~~v~~id~~~~------------------~~~~l~------~~~~D~vf~~lhG~~gEdg~iq~~l 72 (300)
T Consensus 7 HSALqIl~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~d~f~di~~~~~q~~L~~~N~I~-IPhgSfv~Y~G~~~ie 85 (124)
T pfam06849 7 HSALQILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVVDKFKDILDEEVQQKLRENNAIF-IPHGSFVAYVGYDRVE 85 (124)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEE-ECCCCEEEEECHHHHH
T ss_conf 039899723887399578998179752133268673799956589987299999999889799-7488846765589986
Q ss_pred HHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCE
Q ss_conf 64321002310023320365001000021210000121
Q gi|254781179|r 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 (300)
Q Consensus 73 e~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~ 110 (300)
T Consensus 86 ~~~~VP~FGNR~lL-rwEseR~~~~~lLe~Agi~~Pk~ 122 (124)
T pfam06849 86 NEFKVPIFGNRNLL-RWESERDKERKLLEKAGIRYPKK 122 (124)
T ss_pred HCCCCCEECCHHHH-HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 02788700478888-87653677999999769999835