HHsearch alignment for GI: 254781179 and conserved domain: pfam08442

Probab=98.22  E-value=8.4e-06  Score=57.29  Aligned_cols=95  Identities=20%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCC-CEEEEEC--CCCC--CCCEEEECCHHHHHHHHHHHCCCC---
Q ss_conf             5001000021210000121320222000--1221058-6256432--4776--421143259899999886300366---
Q gi|254781179|r   92 DKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISP-PYVIKPL--KGGS--SLGIIVIKKDQSIPLDLLQSSSWN---  161 (300)
Q Consensus        92 dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~-P~ivKP~--~ggs--S~Gv~~v~~~~el~~~~~~~~~~~---  161 (300)
T Consensus         3 hEyqaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T   82 (202)
T pfam08442         3 HEYQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVT   82 (202)
T ss_pred             CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEE
T ss_conf             38899999998599899915969999999999980998699987423588876773899789999999999872977875


Q ss_pred             --------CCCCCCCCCCCCC-CEEEEEECCCCC
Q ss_conf             --------8854223335788-457887314444
Q gi|254781179|r  162 --------HGDQLLIEQYVDG-IELTCGVMGDAS  186 (300)
Q Consensus       162 --------~~~~vlVEefI~G-~E~~v~Vl~~~~  186 (300)
T Consensus        83 ~QTg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~  116 (202)
T pfam08442        83 KQTGPEGKPVNKVLVEEAVDIAREYYLSIVLDRA  116 (202)
T ss_pred             EECCCCCCEEEEEEEEECCCCCCEEEEEEEECCC
T ss_conf             5027889623389998515401007999997577