BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] (300 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 300/300 (100%), Positives = 300/300 (100%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG Sbjct: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS Sbjct: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG Sbjct: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC Sbjct: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR Sbjct: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 >gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 311 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 224/300 (74%), Positives = 270/300 (90%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG Sbjct: 12 VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS Sbjct: 72 GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI KSDFY+Y+ KYSS S+HVLPA IP I +EV+R++ +AHQAIGC Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311 >gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 308 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++QRLA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 337 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 35 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 95 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334 Query: 298 CLR 300 CLR Sbjct: 335 CLR 337 >gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 308 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42] gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 308 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ +DV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV S ++NRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 308 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE G++V+++DV+R V LA LKPD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV S+++NRF + Sbjct: 66 PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PYV+KP++ GSS G++++K++Q+ P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY++ S HV+PA+I ++Y+++Q LA AHQAIGC Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305 Query: 298 CLR 300 C R Sbjct: 306 CSR 308 >gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56] Length = 308 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GF+V+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5] Length = 308 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+++L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771] Length = 308 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 306 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA ALE G++VS++DV R V VLA L+PD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245 Query: 241 RGISRSDFLFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDASCL Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 308 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV S +VNRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099] gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 308 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV S + NRF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQA+GC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021] gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti 1021] gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] Length = 308 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] Length = 308 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+YV G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA++ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] Length = 308 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 308 Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G PV S + +RF + Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQ IGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 308 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G+ V S + +RF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P +L SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] Length = 308 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R + VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E+Y+ G ELTCG Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA+I IY+++Q LA +AH+AIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] Length = 307 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSL SG+ACA+ALE GF+VS++DVDR V LA LKPD+AFN LHG Sbjct: 5 VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV ++ R + Sbjct: 65 PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H SPPYVIKP+ GSS G+I++++DQ P L S W G+ LL+EQ+V G ELTC Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI FY Y+ KYS S H++PA+IP D+ +++Q + LAH+AIGC Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++RSDF +D +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CER 307 >gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] Length = 308 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V VLA LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V S+L+NRF + + Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +DV EI FY Y+ KY + S+HV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58] gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58] Length = 308 Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R V VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQS P +L SS W G+Q+++E+Y+ G ELTCG Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA I IY+++Q LA +AHQAIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1] gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1] Length = 308 Score = 354 bits (909), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA ALE G++VS++DV R V VL+ LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE L IPYTHSG+LASAL+MDK +K V S G+PV S ++NRF + Sbjct: 66 PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++++ QS P +L S+ W +G+++++E+Y+ G ELTC Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L V EI FY Y+ KY+ S HV PA+I +IY++++RLA AHQAIGC Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D P + WLEIN QPGMTP S+ P++AA AG F LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CPR 308 >gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 320 Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V VLA LKPD+ FN LHG Sbjct: 18 VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + + Sbjct: 78 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMT S+ P++A AG SF ELL WMVEDAS Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317 Query: 298 CLR 300 CLR Sbjct: 318 CLR 320 >gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] Length = 316 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLS+G +CA ALE G++V+++DVDR+V LA LKPD+AFN LHG Sbjct: 14 VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V G+PV + +++R Sbjct: 74 PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ +D+S P L S W +GD +++E+++ G ELTC Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI +Y Y+ KY+ STHVLPA+I +IY+++Q L+ AH+AIGC Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF D + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313 Query: 298 CLR 300 C R Sbjct: 314 CQR 316 >gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4] gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4] Length = 300 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 162/300 (54%), Positives = 220/300 (73%), Gaps = 3/300 (1%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 ++GG SSER VSL+SG CASALE+ G++V+++DV R + VL LKPD+ FN LHG FG Sbjct: 1 MLGGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV + ++RF + + H Sbjct: 61 EDGTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHP 120 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E YV G ELTCGVM Sbjct: 121 IEPPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMD 180 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +L VTE+ + FY Y+ KY++ STHV+PA++ IY+++Q L+ AH AIGCRG+ Sbjct: 181 GKALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGV 240 Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SRSDF +D + + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R Sbjct: 241 SRSDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300 >gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 312 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL++G CA ALE AG+KV+++DV V VL LKPD+ FN LHG Sbjct: 10 VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L IPYTHSG+ ASAL+MDK SK V + G+PV S ++NR S Sbjct: 70 PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+++++++Q+ P ++ SS W +GD++++E+YV G ELTC Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI FY Y+ KY + S HV PA+I +Y++++RLA AHQAIGC Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLEIN QPGMTP S+ PEMA AG+SF E + WMVEDAS Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309 Query: 298 CLR 300 C R Sbjct: 310 CRR 312 >gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 308 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 176/303 (58%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] Length = 321 Score = 345 bits (885), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V LA L+PD+AFN LHG Sbjct: 19 VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V + GVPV + L +R Sbjct: 79 PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS G++++++DQ P L W +GD ++IE++V G ELTC Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L+V EI FY Y+ KY S+H++PA +P D+ +++Q + AH A+GC Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMT S+ P++AA +G+SF ELL WMVEDAS Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318 Query: 298 CLR 300 C R Sbjct: 319 CRR 321 >gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2] gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2] Length = 307 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA ALE GF+V+ +DVDR + LA L+PD A N LHG Sbjct: 5 VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV + + RF Sbjct: 65 RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KPL GSS G+I+++ DQ+ P L W +GD +L+E++V G ELTC Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + VTEI +Y Y+ KY + S H+LPA + +Y+ VQ LA +AH+A+GC Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMVEDAS Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 307 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA AL GF+V+++DVDR +G LA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+ + V+R Sbjct: 65 RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKPL GSS G+ ++++DQ+ P L S W G+++L+E Y+ G ELTC Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + DV EI +Y Y+ KY S H+LPA++ +IY+ VQ L+ AH+A+GC Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMV+DAS Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 308 Score = 342 bits (877), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 177/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V VLA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASVLAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] Length = 309 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 218/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ CA+ALE G+KV+++DVDR + VLA L+PD+AFN LHG Sbjct: 7 VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++ G+PV ++VNRF + Sbjct: 67 PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+I++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L V E+ + FY ++ KY+ S H+LPAKI +Y+E+Q+L+ AHQA+GC Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S + LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306 Query: 298 CLR 300 C R Sbjct: 307 CCR 309 >gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] Length = 308 Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 158/303 (52%), Positives = 220/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSL+SGK CA ALE+AG++V+++DVDR++ VL LKPD+ FN LHG Sbjct: 6 VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV ++VNR + Sbjct: 66 PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D+L+ E+++ G ELTC Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L V +I FY Y+ KY+ S H+LPAKI +Y+ ++ LA AHQA+GC Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S ++ LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060] gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060] Length = 307 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE GF+++ IDV R++ VLA ++PD+AFN LHG Sbjct: 5 VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV +VNRF S Sbjct: 65 PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS+G++++++ +S P L W++GD++L E Y+ G ELTC Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I ++Y Y+ KY+ S HVLPA+I IY+ V+ LA AHQA+GC Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AGYSF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13] gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 308 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M] gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M] Length = 315 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28] gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 308 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840] gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840] Length = 308 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 176/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] Length = 315 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1] gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1] gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33] gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1] gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94] gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99] gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] Length = 308 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] Length = 311 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER +SL SG ACA ALE GF+V+++DV R V VLA LKPD+AFN LHG Sbjct: 9 VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LAS+L+M K +K V+++ GVPV +++R Sbjct: 69 RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+ ++K+ +S P L ++ W HGD +L E +VDG ELTC Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +FY ++ KY+ S HVLPA + +IY+EVQ+LA AH+A+GC Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PEMAA+AGYSF L+ WMVEDAS Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308 Query: 298 CLR 300 C R Sbjct: 309 CDR 311 >gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330] gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330] gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] Length = 308 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] Length = 308 Score = 338 bits (867), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941] gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19] gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str. 9-941] gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] Length = 308 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WM+EDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] Length = 315 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WM+EDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1] gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] Length = 306 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/301 (54%), Positives = 226/301 (75%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGTACADVLEAQGYRVSRVDVDGHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS +++RF + Sbjct: 66 PFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPSCVMSRFAVGK 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSSLG+I++K+++S+P + S W + D +++E+Y+ G ELTC Sbjct: 126 EHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 VMG+ +LDV EI K FY Y+ KY S S HV PA++ +IY+ VQR++ AHQAIG Sbjct: 186 VMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF FD + ++ WLEIN QPGMTP S+FP++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 162/303 (53%), Positives = 217/303 (71%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S EREVSL SG CA ALE+ G++V+++DVDR V VLA LKPD+A N+LHG Sbjct: 5 VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV LV R Sbjct: 65 CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GGSS+G+ ++K+DQ P L + W G+ L+ E ++ G+ELTCG Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV E+ FY YE KY++ S H+LPA++ IY++V+ LA AH+A+GC Sbjct: 185 VMGDRALDVIEVEAVHG-FYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISR+DF +D P + + LE+N QPGMT S+ P+MAA+AG SF EL+ WMVEDA+ Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303 Query: 298 CLR 300 R Sbjct: 304 LDR 306 >gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1] Length = 306 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/301 (52%), Positives = 225/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA ALE G+ V ++DVD+ + VL L+PD+ FN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGTACADALEKQGYHVIRVDVDQQIATVLKQLQPDIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE +IPYTHSG++ASAL+MDK R+K +V++ GV V PS ++NRF + Sbjct: 66 PFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPSCVMNRFAIGR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP++ GSS G++++ D+++PL + SS W +GD++++E+Y+ G ELTC Sbjct: 126 EHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +LDV EI K FY Y+ KY S H+ PA++ L+IY++VQR++ AH+AIG Sbjct: 186 VLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQRMSLAAHRAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F + ++ WLEIN QPGMTPVS+ P++A +G ++ +++ W+ EDASC+ Sbjct: 246 CRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIVKWIAEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] Length = 307 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+ERE+SL SG+ACA ALE+ ++VS++DV VLA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELL IPYTHSG+LAS+++M K +K V+++ GVPV +V+R Sbjct: 65 KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +I + P L + W HGD +L EQ++ G ELTC Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI +Y Y KY+ S HVLPA + +IY+EVQ LA AH+A+GC Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PEMAAYAG+SF EL+ WMVEDAS Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] Length = 307 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE AG++V+++DVDR++ VL LKPD+AFN LHG Sbjct: 5 VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV S++V+R Sbjct: 65 PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP+ GSS G++++K+ Q P L W +G+ L++E+Y+ G ELTC Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +Y Y+ KY S H+LPA+I +Y+E+Q+ + AH A+GC Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++R+DF F+ ++ LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CGR 307 >gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3] Length = 306 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/302 (52%), Positives = 225/302 (74%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P + FN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS ++RF + S Sbjct: 66 SFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYTMSRFAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS GII++ D++ P + SS W H D++++E+Y+ G ELTC Sbjct: 126 KHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ LDV EI +P FY+Y+ KY S S H+ PA++ L+IY++VQR++ AHQAI Sbjct: 186 VLGNEVLDVCEI-IPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRISLAAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRGISRSDF F+ + ++ WLEIN QPGMTP S+ P++A +G ++ +++ W+VEDASC Sbjct: 245 GCRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKWIVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1] gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ACA ALE G++V++IDVDR++ VLA KPD+AFN LHG Sbjct: 6 VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV +V+R ++ S Sbjct: 66 PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP+ GSS G++++K+D P L W + D L+ E+Y+ G ELTC Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I FY YE KY+ S H+LPAKI IY+EVQ+L AHQA+GC Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] Length = 307 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKACA ALE G++V+++DV + VL L+PD AFN LHG Sbjct: 5 VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V +VNR Sbjct: 65 PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS+G+I+++ +S P +L S W G+Q+L E Y+ G ELTCG Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V E+ D+Y Y+ KY+ S HVLPA++ ++Y+ VQ L+ AHQA+GC Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PEMAA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] Length = 327 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 216/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE+AG++VS++DVDR+V VL L+PD+AFN LHG Sbjct: 25 VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV +VNR + Sbjct: 85 PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V D +L V +I +FY ++ KY+ S H+LPAKI +Y+ + LA AHQA+GC Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S + LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324 Query: 298 CLR 300 C R Sbjct: 325 CCR 327 >gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] Length = 308 Score = 328 bits (840), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGK CA AL G++V++ID R + + +KPD+AFN LHG Sbjct: 7 VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V + G+PV S++V R Sbjct: 67 RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +++ + P L S+ WN GD+++ E+Y+ G ELTC Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ VTEI + + FY YE KY + S H++PA I DIY EVQR+ AH+A+GC Sbjct: 187 VMGEEIFGVTEI-IANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD P ++ LE+N QPGMTP S+ PE+A AGYS+ EL+ WMVE+AS Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305 Query: 298 CLR 300 C R Sbjct: 306 CDR 308 >gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] Length = 307 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] Length = 307 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I++++++S P +L S W +G+++L E Y+ G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4] gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4] Length = 307 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA+ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 306 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/302 (51%), Positives = 224/302 (74%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER +SLSSG ACA LE+ G++VS++DV + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSISLSSGAACADVLEEQGYRVSRVDVGAHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS ++NRF++ Sbjct: 66 PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPSRIMNRFSIGK 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS G++++++++++P + S W + D++++E+Y+ G ELTC Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ LDV EI +P FY Y+ KY + S H+ PAK+ L+IY+ VQR++ AHQAI Sbjct: 186 VLGNEVLDVCEI-LPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQRMSLAAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ WMVEDASC Sbjct: 245 GCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] Length = 307 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] Length = 306 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 156/302 (51%), Positives = 223/302 (73%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P +AFN LHG Sbjct: 6 IAVLMGGVSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV PS ++NRF + Sbjct: 66 SFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAPSYVMNRFAIGV 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS G++++ D+ P + SS W + D++++E+Y+ G ELTC Sbjct: 126 KHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD LDV EI +P FY Y+ KY + S H+ PA++ L+IY++VQR++ AHQAI Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQRMSLAAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDIVKWIVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] Length = 309 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE G++V++IDV R + LA LKPD AFN LHG Sbjct: 7 IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K + + GVPV ++ + Sbjct: 67 KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +HL+ PPYV+KP+ GSS+G+ +++ D P L + W HGD +L+E+YV G ELTC Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L + EI + FY YE KY+ S H+LPA++ +IY+ +Q++A AH A+G Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245 Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF D + ++ LE+N QPGMT S+ PE+AA+AG SF EL+ W+VE+A Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305 Query: 297 SCLR 300 SC R Sbjct: 306 SCNR 309 >gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] Length = 307 Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V++++V + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C] Length = 306 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 158/302 (52%), Positives = 224/302 (74%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P +AFN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPHIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R + S Sbjct: 66 SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ G ELTC Sbjct: 126 QHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD LDV EI +P FY Y+ KY S S H+ PA++ L+IY++VQR++ +AHQAI Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLVAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] Length = 306 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGAACADVLEVQGYRVSRVDVDAHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS +++RF + Sbjct: 66 PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPSRIMSRFALGQ 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS G+++++++++ P + + W + D+++IE+Y+ G ELTC Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ LDV EI K FY Y+ KY + S H+ PA++ L+IY+ VQR++ AHQAIG Sbjct: 186 VLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] Length = 306 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 160/305 (52%), Positives = 217/305 (71%), Gaps = 8/305 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+ACA A E G++V+++DV R + VL LKPD+A N LHG Sbjct: 5 VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++ VPV +V R Sbjct: 65 PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS+G+ +IK+DQ P L W HGD LL E+Y+ G+ELTC Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 VMGD +L V EI +SD FY YE KY+ S H+LPA+I ++Y++V+ LA AH+A+ Sbjct: 185 VMGDEALGVIEI---QSDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRAL 241 Query: 239 GCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRGISRSDF +D + + LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVED Sbjct: 242 GCRGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVED 301 Query: 296 ASCLR 300 AS R Sbjct: 302 ASLDR 306 >gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] Length = 306 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 169/304 (55%), Positives = 220/304 (72%), Gaps = 6/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V VL HLKPD+AFNVLHG Sbjct: 5 VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV LV+R Sbjct: 65 QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GGSS+G+ ++++DQ+ P L W HG+ LL E+++ G+ELTC Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD LDV EI + FY YE KY+ S H+LPA+I +IY+ VQ L+ AH+A+GC Sbjct: 185 VMGDKVLDVIEIESTQK-FYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243 Query: 241 RGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG+SRSDF FDP SR + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDA Sbjct: 244 RGVSRSDFRFDP-SRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDA 302 Query: 297 SCLR 300 S R Sbjct: 303 SLER 306 >gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 306 Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 158/302 (52%), Positives = 222/302 (73%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + VL L+P + FN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPHIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R + S Sbjct: 66 SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ G ELTC Sbjct: 126 QHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD LDV EI +P FY Y+ KY S S H+ PA++ L+IY++VQR++ AHQAI Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLAAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis] gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] Length = 306 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 157/302 (51%), Positives = 221/302 (73%), Gaps = 3/302 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSER VSLSSG ACA LE G+ V ++DVD + VL L+P FN LHG Sbjct: 6 VTVLMGGWSSERSVSLSSGTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ + Sbjct: 66 PFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP++ GSS G++++ D+++PL + ++ W + D++++E+YV G ELTC Sbjct: 126 EHPMKPPYVIKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD LDV EI VPK FY Y+ KY S S H+ PAK+ +IY+ VQR++ AHQAI Sbjct: 186 VLGDEVLDVCEI-VPKECFQFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC Sbjct: 245 GCRGVSRSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASC 304 Query: 299 LR 300 +R Sbjct: 305 MR 306 >gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] Length = 312 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 155/304 (50%), Positives = 212/304 (69%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSLSSG+ CA ALE KV+++D R + VL LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V L +R + S Sbjct: 70 KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I PPYV+KP GSS+G+ V ++ + P+ + + W +GDQ+++E ++ G EL Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189 Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+A+ L +T+I P FY YE KY+ S HVLPA++P ++ + R A LAH Sbjct: 190 VIGEATGPRALTITDI-TPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHA 248 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG+SR+DF +D ++ + LE+N QPGMTP S+ PE AA+ G +REL+ WMVEDA Sbjct: 249 AMGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDA 308 Query: 297 SCLR 300 SC R Sbjct: 309 SCPR 312 >gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] Length = 306 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/301 (53%), Positives = 225/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 VAVLMGGGSSERSVSLSSGTACADILEARGYRVSRVDVDSHIASVLERLQPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS +++RF + Sbjct: 66 PFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPSCIMSRFAVGR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKPL GSS G++++K+++S P + + W + D++++E+Y+ G E TC Sbjct: 126 EHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEKYIPGREFTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ +LDV EI K FY+Y+ KY S S H+ PA++ +IY+ VQR++ AHQAIG Sbjct: 186 VLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMTP S+FP++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] Length = 308 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V+++DV R + VLA LKPD+AF LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYTHSG+LAS+L+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS+G+ ++ ++ + P L W+HG++LL+E+YV G ELTC Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + +VTEI VP FY YE KYS S HVLPA I +Y+EV+RL AH ++GC Sbjct: 187 VIKGEASEVTEI-VPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] Length = 308 Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 155/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V++IDV R + VL +LKPD+A +LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+L+S+L+M K +K V+++ GVPV + + R + Sbjct: 67 KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYVIKP+ GSS+G+ ++ +DQ+ P L W HG++LL+E+Y+ G ELTC Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + DV EI VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VIKGEASDVIEI-VPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 308 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 155/303 (51%), Positives = 209/303 (68%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SGKACA ALE G++V+++DV R++G VL LKPD+A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYVIKP+ GSS+G+ ++ + P L W HG+QLL+E+YV G ELTC Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ V EI V + FY YE KYS S H+LPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTGVIEI-VQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AA AG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LGR 308 >gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] Length = 304 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/301 (50%), Positives = 201/301 (66%), Gaps = 2/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ER+VSL +G ACA L DAG++V +ID R + LA PD+ FN LHG Sbjct: 5 IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDGLVQ +LE PYTHSG+LASAL+MDK ++K V+ + G+P I+ NRF Sbjct: 65 EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV KP GSS+G+ ++ + + P L S++W GD++LIE+YV G ELT Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L VTEI P + FY YE KY++ S H+LPA I +I + LA AH+A+GC Sbjct: 185 VMEDRALCVTEIK-PNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243 Query: 241 RGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG++RSDF +D + W LEIN QPGMTP S+ PE A Y G F +L+ WM E+ASC Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303 Query: 300 R 300 R Sbjct: 304 R 304 >gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] Length = 311 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/304 (50%), Positives = 210/304 (69%), Gaps = 6/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+SSER+VSLSSGK CA ALE G +V+++D R + VLA LKPD+ N LHG Sbjct: 10 VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V L +R + + Sbjct: 70 EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I PPYVIKP GSS+G+ ++++ + P S SW +GD +++E Y+ G EL Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREGDA-PQPEPGSDSWTYGDLVMVEPYIPGKELAVA 188 Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+A+ L VT+I P FY YE KY+ S H LPA +P +++ R + AH Sbjct: 189 VIGEATGPRALTVTDI-TPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHA 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG+SRSDF +D + ++ LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDA Sbjct: 248 ALGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDA 307 Query: 297 SCLR 300 SC R Sbjct: 308 SCPR 311 >gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 308 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 158/303 (52%), Positives = 205/303 (67%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG ACA ALE GF+V++IDV R + VL L+PD A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+ + GVPV + ++R + Sbjct: 67 HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +I + P L W +GD+LL+E+YV G ELTC Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ DV EI VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTDVIEI-VPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AAYAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] Length = 313 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 152/305 (49%), Positives = 207/305 (67%), Gaps = 6/305 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVLMGG+S+EREVSL+SG+ CA ALE G +VS++D R + VL+ L KPD+ N LH Sbjct: 10 VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V L +R + Sbjct: 70 GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S+H+I PPYV+KP GSS+G+ ++ + + P+ + W +G+Q+++E Y+ G EL Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189 Query: 180 GVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+G A +L VT+I P FY YE KY+ S HVLPA +P +++ R A AH Sbjct: 190 AVIGYADGPRALTVTDI-TPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAH 248 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG+SRSDF +D + + LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVED Sbjct: 249 VAMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVED 308 Query: 296 ASCLR 300 ASC R Sbjct: 309 ASCPR 313 >gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] Length = 315 Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 145/303 (47%), Positives = 210/303 (69%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R + +L L KPD+ FN L Sbjct: 14 VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDGL+Q +LE L +PYTHSG+LASAL+M+K +++V+++ GVPV + V R + Sbjct: 74 HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + H I PPYV+KP+ GSS+G+ +++ Q+ +L+ W +G+++L+E+++ G ELT Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GVMGD +L VTEI VP+S F+ Y KY+ + HV PA+IP D+ +E RLA LAH+ + Sbjct: 192 VGVMGDRALAVTEI-VPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250 Query: 239 GCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GC G+SRSDF +D + +++LE N QPG T +S+ PE AA G F EL W+VE Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310 Query: 296 ASC 298 A C Sbjct: 311 ARC 313 >gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] Length = 307 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG Sbjct: 12 VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ ++ +D + P L + L++E YV G ELT Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GC Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305 Query: 299 LR 300 R Sbjct: 306 SR 307 >gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] Length = 306 Score = 295 bits (754), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 141/300 (47%), Positives = 201/300 (67%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER VSLSSG+ A+A AG+ V++IDV R + LA +PD+ N LHG Sbjct: 8 VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V S G+ V V R + Sbjct: 68 PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G++++++ + P L +W +GD L+ E+Y+ G ELT Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI + D+Y ++ KY++ S HV+PA +P + + A LAH+A+GC Sbjct: 188 VLGDRALAVTEITTLR-DYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG +RSDF +D ++ LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306 >gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] Length = 302 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 140/300 (46%), Positives = 200/300 (66%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG SSEREVSLSSG+ A A + GF V +ID+ R + L PD+ N LHG Sbjct: 4 VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V + G+ V + + + + Sbjct: 64 PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ + + P L W GD +L+EQ++ G ELT Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTEI + D+Y Y KY + S HV+PA+I + + A +AH A+GC Sbjct: 184 VMGNEALAVTEITTLR-DYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG+SRSDF +D ++++ LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302 >gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 317 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 150/306 (49%), Positives = 206/306 (67%), Gaps = 9/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ER+VSL+SG A AL + G++V++IDVDR++ L + PD+ FN LHG Sbjct: 15 VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++ GV V + LV R Sbjct: 75 KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTC 179 H++ PPYV+KP GSS+G++++ P + +S DQ+ ++E+YV G ELTC Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPSSI--ASGGSPDQIVMVERYVPGRELTC 192 Query: 180 GVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+GD DV EI VP FY YE KY + S H LPA++ D+Y+ V+ L AHQA Sbjct: 193 AVIGDFVTDVIEI-VPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQA 251 Query: 238 IGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG+SR+DF FD + ++ LE+N QPGMT S+ PE+A +AG+SF +L+ WMVE Sbjct: 252 LGCRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVE 311 Query: 295 DASCLR 300 DASC R Sbjct: 312 DASCNR 317 >gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] Length = 294 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/301 (49%), Positives = 200/301 (66%), Gaps = 10/301 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG + Sbjct: 1 MLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRW 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++H Sbjct: 61 GEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARH 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ PPYV+KP GSS+G+ ++ +D + P L N L++E YV G ELT VM Sbjct: 121 ILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMPQN----LMVETYVPGRELTVTVM 176 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRG Sbjct: 177 GDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRG 234 Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ISRSD +D SR + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC Sbjct: 235 ISRSDLRWDE-SRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCS 293 Query: 300 R 300 R Sbjct: 294 R 294 >gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] Length = 325 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/296 (47%), Positives = 206/296 (69%), Gaps = 1/296 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSL SG+ CA ALE G KVS+ID R + VL+ LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV L NR+ + Sbjct: 70 AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYV+K GSS+G+ +++ + P + SW +G+Q+++E ++ G+EL G Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM +++VTEI + + +FY YE KY+ S H++PA++P ++ + + AH A+GC Sbjct: 190 VMDGKAMEVTEI-LTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG++RSD +D ++ + LE+N QPGMTP S+ PE AA G F L+LW+ EDA Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDA 304 >gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] Length = 294 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/300 (49%), Positives = 198/300 (66%), Gaps = 8/300 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG + Sbjct: 1 MLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRW 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++H Sbjct: 61 GEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARH 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 L+ PPYV+KP GSS+G+ ++ +D + P L + L++E YV G ELT VM Sbjct: 121 LLPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVTVM 176 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRG Sbjct: 177 GDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRG 234 Query: 243 ISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ISRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC R Sbjct: 235 ISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294 >gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] Length = 307 Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 147/302 (48%), Positives = 201/302 (66%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D + VLA ++PD FN LHG Sbjct: 12 VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S++ + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +++ D + P L + L++E Y+ G ELT Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRLAP----DMPRDLMVETYIPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y+ KY S HV+PA++P +I +A AH+A+GC Sbjct: 188 VMGDRALAVTDIVT--DGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + + LE N QPGMTP S+ PE AA+ G SF E WMVEDASC Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 NR 307 >gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] Length = 304 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 2/299 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S ER+VSL SG+ ALE G++VS ID D L +KPD+ FN LH Sbjct: 5 VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG VQ +L+ L PYTHSG+ ASAL+MDK R+K V+ G+ L++RF Sbjct: 65 GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 H++ PPYV KP GSS+G++++ + + P +L S W + +++LIE+++ G ELT Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 VMGD L VTEI VPK+ FY Y+ KYS S H LPA +P ++ E A AHQ +G Sbjct: 185 AVMGDKPLTVTEI-VPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG++RSDF +DP + V+ LEIN QPGMTP S+ PE AA+ G F +L+ WMVE+A+C Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302 >gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 292 Score = 291 bits (745), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 148/298 (49%), Positives = 193/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++ LAH+KPD+ FN LHG +GE Sbjct: 1 MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE L IPYTHSG+LASAL+MDK R+K + G+PV PS+L R + +H++ Sbjct: 61 DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + P L S D +++E Y G ELT V+GD Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQL----SPEMPDVVMVEAYAAGRELTTAVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KYS S H +PA IP+ IY A AH+A+GCRG+S Sbjct: 177 RALTVTDIIT--DGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234 Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+AG SF EL W+VEDASC R Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292 >gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] Length = 324 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/300 (49%), Positives = 205/300 (68%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG ACA ALE G KVS+ID V VLA KPD+ FN LHG Sbjct: 16 IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 76 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +IK+ + P + + + SW G+++++E Y+ G+EL Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195 Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G++ +L VT+I + FY YE KYS S HVLPA IP + R+A LAH Sbjct: 196 VLGESNGPRALAVTDIRA-STGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHT 254 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG++RSDF +D ++ + LE+N QPGMTP S+ PE A + G F +L+LW+VEDA Sbjct: 255 ALGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314 >gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] Length = 294 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/300 (49%), Positives = 198/300 (66%), Gaps = 8/300 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S+EREVSLSSG+ CA+AL GF+V ++D R + LA +KPD+ FN LHG + Sbjct: 1 MLMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRW 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V S G+PV S L + + + H Sbjct: 61 GEDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGH 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 +++PPYV+KP GSS+GI ++ + + P L ++ Q+++E Y G ELT V+ Sbjct: 121 VMAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEAMP----QQVMVETYAPGRELTTTVI 176 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD +L VT+I +Y Y+ KY S HVLPA +P +I+ A AH+A+GCRG Sbjct: 177 GDRALTVTDILT--DGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRG 234 Query: 243 ISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +SR+DF +D + + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC R Sbjct: 235 VSRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294 >gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 297 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/302 (49%), Positives = 201/302 (66%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVLMGG S+EREVSLSSG+ CA+AL GF+V ++D + L +KPD+ FN LHG Sbjct: 1 MAVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++ + G+P+ PS++V + + Sbjct: 61 RWGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVV 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV KP GSS+GI ++ ++ + P L + D +++E+YV G ELT Sbjct: 121 AHVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAAMP----DHVMVEKYVAGRELTVT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI + +Y Y+ KY S HVLPA IP DI+ A AH A+GC Sbjct: 177 VMGDRALTVTEI-MTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGC 235 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG++R+D+ +D + +F LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 236 RGVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASC 295 Query: 299 LR 300 R Sbjct: 296 DR 297 >gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] Length = 302 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 199/302 (65%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG S+ER VSL+SG A AL AG+ V+ +DV R V +A L +PD+ FN Sbjct: 5 VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK +K V +PV P ++ +R + Sbjct: 65 LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + ++ ++ PYV+KPL GSS+G+ IV + +P W +G Q+++E+++ G E Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTSETNDLP---FSRDDWPYGRQVMVERFIPGRE 181 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GVMGD +L VTEI V FY Y+ KY+ S H++PA + +++ + Q L+ LAHQ Sbjct: 182 LTVGVMGDKALGVTEI-VTDHRFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQ 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG+SR+D FD ++ LE+N QPGMT S+ PE A +AG SF +L+ W+VE A Sbjct: 241 ALGCRGVSRADLRFD--GETLYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETA 298 Query: 297 SC 298 C Sbjct: 299 QC 300 >gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] Length = 296 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 149/302 (49%), Positives = 198/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVLMGG S+EREVSLSSG+ CA+AL G +V ++D + L +KPD+ FN LHG Sbjct: 1 MAVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V + G+PV S++V + + + Sbjct: 61 RWGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GSS+GI ++ + + P L S + +Q+++EQYV G ELT Sbjct: 121 GHVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQL----SDDMPEQVMVEQYVAGRELTVT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI +Y Y+ KY S HVLPA IP I+ A AHQ +GC Sbjct: 177 VMGDRALTVTEILT--DGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGC 234 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+D+ +D +F LE N QPGMTP S+ PE AA+ G +F +L WMVEDASC Sbjct: 235 RGVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASC 294 Query: 299 LR 300 R Sbjct: 295 DR 296 >gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 296 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/302 (48%), Positives = 194/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVLMGG S+EREVSLSSG+ CA+AL G++V ++D + L + PD+ FN LHG Sbjct: 1 MAVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK G+PV SIL ++ T+ + Sbjct: 61 RWGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I+PPYV+KP GSS+GI ++ + + P L S + +++E Y G ELT Sbjct: 121 AHVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDSMP----ETVMVEAYAPGRELTTT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY+ S H PAK+P +I + A AH+ +GC Sbjct: 177 VMGDRALGVTDIIT--DGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGC 234 Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D K + LE N QPGMTP S+ PE A G SF +L WMVEDASC Sbjct: 235 RGVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASC 294 Query: 299 LR 300 +R Sbjct: 295 VR 296 >gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] Length = 296 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 199/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVLMGG S+EREVSLS+G+ CA+AL D G++V+++D + LA +PD+ FN LHG Sbjct: 1 MAVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+ + G+PV S L + + + Sbjct: 61 RWGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+GI ++++ + P L S + D++++E Y G ELT Sbjct: 121 AHVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQL----SEDMPDEVMVETYAPGRELTTT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VT+I +Y ++ KY S HVLPA +P +I++ A AH A+GC Sbjct: 177 VVDGKALTVTDILT--DGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGC 234 Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D K + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 235 RGVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASC 294 Query: 299 LR 300 R Sbjct: 295 GR 296 >gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] Length = 322 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 143/304 (47%), Positives = 200/304 (65%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL +G A A+ALE G +VS++D + V VL L PDL FN LHG Sbjct: 14 IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV L +R + Sbjct: 74 RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + W G+Q+++E Y+ G+EL Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193 Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G++ +L VTEI + FY Y+ KYS S HVLPA IP + LA L H Sbjct: 194 VVGESNGPRALAVTEIRS-STGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHT 252 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC+G++RSDF +D ++ + LE+N QPGMTP S+ PE A +AG SF L+ W+VEDA Sbjct: 253 ALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDA 312 Query: 297 SCLR 300 R Sbjct: 313 YARR 316 >gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] Length = 307 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/303 (47%), Positives = 199/303 (65%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR + L+ ++PD+ FN LHG Sbjct: 12 VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+ + G+P+ S L + + Sbjct: 72 RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ +++ + P L + + +++E Y G ELT Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQL----GADMPEVVMVETYAPGRELTVS 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC Sbjct: 188 VMGERALAVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D SR + LE N QPGMTP S+ PE AA G SF EL WMVEDAS Sbjct: 246 RGLSRTDFRWDE-SRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CNR 307 >gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] Length = 306 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/302 (47%), Positives = 197/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+AFN LHG Sbjct: 11 VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK + G+PV S++ + + + Sbjct: 71 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I+PPYV+KP GSS+GI ++ + + P L + Q+++E Y G E+T Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEEMP----AQVMVEAYAPGREMTVT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA+IP +I A AHQ +GC Sbjct: 187 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304 Query: 299 LR 300 R Sbjct: 305 ER 306 >gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 307 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/302 (48%), Positives = 195/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG+ CA AL AG+ V++ID + L L PD+ FN LHG Sbjct: 12 VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K + G+PV S L ++ + + Sbjct: 72 RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GSS+G+ ++ + P L S + +++E Y G ELTC Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQL----SDEMPEVVMVETYAPGRELTCT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI + +Y Y KY++ S HV PA++P I + ++ A AH+A+GC Sbjct: 188 VMGDRALCVTEIVT--TGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + + LE N QPGMTP S+ PE AA G SF +L WMVEDASC Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 DR 307 >gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] Length = 335 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 211/305 (69%), Gaps = 8/305 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 +AVLMGG S+EREVSL SG A ALE+ G++V+ IDV R +G ++ L +PD+ FN Sbjct: 29 VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L +PYTHSG+ A+A++MDK +K+++ + G+ ++++R Sbjct: 89 LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148 Query: 118 MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + H + PY++KP+ GS++G+ ++++ Q+ P+ S G+++L+E+++ G E Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GVMGD +L VTEI V ++ Y Y KYS+ ++ H LPA IP + +E +R+A LAHQ Sbjct: 209 LTVGVMGDRALTVTEI-VFQAQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267 Query: 237 AIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SRSDF +D P + +++LEIN QPGMTP+S+ PE AA+ G ++ L+ W+V Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327 Query: 294 EDASC 298 E+A+C Sbjct: 328 ENAAC 332 >gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] Length = 319 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/304 (48%), Positives = 203/304 (66%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG CA ALE G KV++ID + VL KPDL FN LHG Sbjct: 11 IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 71 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++K+ + P + + + SW G+++++E Y+ G+EL Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190 Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 VMG+A +L VT+I + FY YE KYS S HVLPA IP + R+A LAH Sbjct: 191 VMGEANGPRALAVTDIRA-STGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHT 249 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCR ++RSD +D ++ + LE+N QPGMTP S+ PE AA+ G F +L+LW+VEDA Sbjct: 250 ALGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDA 309 Query: 297 SCLR 300 R Sbjct: 310 YARR 313 >gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] Length = 296 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 1 MAVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + + Sbjct: 61 RWGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRT 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+GI +++ + P L S + + +++E Y G ELT Sbjct: 121 RHVMPPPYVVKPCNEGSSVGIYLVEAGANNPPAL----SDDMPEVVMVEAYAPGRELTTT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH +GC Sbjct: 177 VMGDRALTVTDILT--DGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGC 234 Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + + LE N QPGMTP S+ PE A G +F EL WMVEDASC Sbjct: 235 RGVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASC 294 Query: 299 LR 300 R Sbjct: 295 NR 296 >gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 304 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 195/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLSSGK CA+AL AGF ++D ++ L + PD+AFN LHG Sbjct: 9 IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K S G+PV S+L + ++ Sbjct: 69 RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP+ GSS+G+ ++++ + P L + L++E Y G ELT Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRLAPEMP----EILMVETYAPGRELTTT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY + S HVLPA +P +I+ A AH +GC Sbjct: 185 VIGDRALTVTDILT--DGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302 Query: 299 LR 300 R Sbjct: 303 NR 304 >gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] Length = 306 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 197/302 (65%), Gaps = 9/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ CA AL AG+KVS+IDVDR + L +KPD+ FN LHG Sbjct: 8 VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L +L IPYTHSG+ ASA++MDK +K V + G+ +V D Sbjct: 68 PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++PPYVIKP+ GSS+G+ ++++ D P + W GD +L+E+YV G ELT Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVREGDNYRPT----AEDWPFGDAVLVERYVPGRELTV 183 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V +++VTEI FY Y+ KY+ S H+LPA +P +I ++ +A AH+AIG Sbjct: 184 AVWDGEAMEVTEI-TSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIG 242 Query: 240 CRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF +D + + ++ LEIN QPGMTP S+ PE AA+ G SF EL+ MVEDA Sbjct: 243 CRGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDA 302 Query: 297 SC 298 C Sbjct: 303 RC 304 >gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] Length = 306 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/303 (47%), Positives = 195/303 (64%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSLSSG+ CA+AL GF+V+++D + L L PD+ FN LHG Sbjct: 11 VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV G+PV S+L ++ +++ Sbjct: 71 RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+G+ ++ + P L S + L++E Y G ELT Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRL----SPEMPETLMVETYAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA +P +++ A AH+A+GC Sbjct: 187 VVGDRALTVTDILT--DGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D SR + LE N QPGMTP S+ PE G SF L WMVEDA+ Sbjct: 245 RGVSRTDFRWDE-SRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDAT 303 Query: 298 CLR 300 C R Sbjct: 304 CNR 306 >gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] Length = 292 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 198/298 (66%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ACA+AL D F+V ++D + L +PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V + G+PV S++V+ T+ H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ +++ + + P L + ++++E+++ G ELT VMG+ Sbjct: 121 DPPYVVKPNNEGSSVGVYLVEIENNGPPQLDDAMP----AEVMVEKFIPGRELTTTVMGE 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I + +Y Y+ KY + STHV+PA IP +I++ A AH A+GCRG+S Sbjct: 177 RALTVTDIHT--TGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + +F LE N QPGMTP S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292 >gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] Length = 296 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 1 MAVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + + Sbjct: 61 RWGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +++ + P L S + D +++E Y G ELT Sbjct: 121 GHVMPPPYVVKPYNEGSSVGVYLVEAGANRPPAL----SDDMPDVVMVESYAPGRELTTT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA +P +I+ A AH+ +GC Sbjct: 177 VIGDRALTVTDILT--EGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGC 234 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE A G SF EL WMVEDASC Sbjct: 235 RGVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASC 294 Query: 299 LR 300 R Sbjct: 295 NR 296 >gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] Length = 292 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 138/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+ER+VSLS+G+ CA+AL DA V ++D V L + PD+ FN LHG +GE Sbjct: 1 MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG +Q +LE L+IPYTHSG+LASAL++DK R+K V G+PV SIL + + + H++ Sbjct: 61 DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+GI ++ + + P L + D++++E + G ELT VMGD Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLAD----DMPDEVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KY+ S H LPA IP+DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDIIT--DGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234 Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+ G +F E W+VEDASC R Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292 >gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 306 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+ CA+AL GF+V ++D + L PD+ FN LHG Sbjct: 11 VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+ + G+PV S L +R +++ Sbjct: 71 RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + L++E+YV G EL+ Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVLAP----DLPATLMVEEYVPGRELSTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L+VT+I +Y Y KYS S HV+PA +P +I++ A AH+A+GC Sbjct: 187 VLGDRALNVTDIIT--DGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + +F LE N QPGMTP S+ PE A AG SF +L WMVEDASC Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304 Query: 299 LR 300 R Sbjct: 305 DR 306 >gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 330 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/301 (47%), Positives = 192/301 (63%), Gaps = 10/301 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S+EREVSLS+G+ CA+AL A V ++D + L + PD FN LHG + Sbjct: 37 VLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHGRW 96 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE L IPYTHSGILASAL++DK R+K + + G+PV SIL + + ++H Sbjct: 97 GEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRARH 156 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ PPYV+KP GSS+GI +++ + P L S + ++++E Y G ELT VM Sbjct: 157 VMPPPYVVKPYNEGSSVGIYIVQDAANGPPQL----SADMPARVMVETYAPGRELTTTVM 212 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD +L VT+I +Y Y KY+ S HV+PA+IP I+ A AH+A+GCRG Sbjct: 213 GDRALTVTDIIT--DGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGCRG 270 Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ISR+DF +D SR + LE N QPGMTP S+ PE AA G SF +L W+VEDASC Sbjct: 271 ISRTDFRWDE-SRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASCD 329 Query: 300 R 300 R Sbjct: 330 R 330 >gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++MGG SSER VSLSSG+ C +AL GF+V +D + L L+PD+ FN LHG Sbjct: 13 VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K ++ G+P+ S L R + + Sbjct: 73 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP GSS+G+ ++ + +L + D L++E +V G ELT Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELAD----DLPDTLMVEAFVPGRELTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V GD +L VT+I +Y Y+ KY S HVLPA++P D+Y A AH+ +GC Sbjct: 189 VQGDRALCVTDIVT--EGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +DP + LE N QPGMTP S+ PE A + G F L W+VEDASC Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306 Query: 299 LR 300 R Sbjct: 307 DR 308 >gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 292 Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 138/298 (46%), Positives = 193/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G CA+AL +AG++V ++D + L L+ + PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK ++K + + +PV S+L R + H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ +++ S P DL S + +Q+++E + G ELT VMGD Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDL----SDDMPEQVMVEAFAPGRELTATVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y+ KY+ S HV+PA IP DI+ A AH+ +GCRG+S Sbjct: 177 KALTVTDILT--DGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234 Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292 >gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] Length = 292 Score = 271 bits (693), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 144/299 (48%), Positives = 190/299 (63%), Gaps = 10/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ACA+AL D F V ++D + L + PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE + IPY+HSG+LASAL+MDK RSK V + G+PV SI+ + + H++ Sbjct: 61 DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L N D +++EQ+ G ELT VMG Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDD----NMPDYVMVEQFAAGRELTTTVMGQ 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I + +Y Y+ KY STH++PA IP DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDILT--TGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D SR V LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDE-SRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292 >gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] Length = 311 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/306 (47%), Positives = 193/306 (63%), Gaps = 7/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA----HLKPDLAFN 56 + VL GG SERE+SL SG A AL D G+ V +IDV R + VL L PD FN Sbjct: 7 IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++ G+ V + Sbjct: 67 ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ +H ++ PYV+KP+ GSS G+ ++ +Q + + G + L+E ++ G E Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT V+G +L VTEI VPK+ FY +E KY+ STHVLPA IP ++ V+ + A Q Sbjct: 187 LTVSVLGAVALGVTEI-VPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245 Query: 237 AIGCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GCRG+SR DF +D S +F LE+N QPGMTP S+ PE AA AG F L+ WM+E Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305 Query: 295 DASCLR 300 DASCLR Sbjct: 306 DASCLR 311 >gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 297 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 142/303 (46%), Positives = 189/303 (62%), Gaps = 13/303 (4%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL G++V ++D DR + LA L PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + IPYTHSG+LASAL+MDK R+K V G+P S L R + S+H++ Sbjct: 61 DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P + ++ + L++E++V G ELT VMG Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176 Query: 185 ASLD-----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 D VTEI +Y YE KY+ S HV PAKIP DI A AH A+G Sbjct: 177 GEGDPGPLCVTEILT--DGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALG 234 Query: 240 CRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 CRG+SR+DF +D ++ + LE N QPGMTP S+ PE A G F L W+VEDAS Sbjct: 235 CRGVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDAS 294 Query: 298 CLR 300 C R Sbjct: 295 CNR 297 >gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1] gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Magnetospirillum magneticum AMB-1] Length = 305 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/306 (46%), Positives = 193/306 (63%), Gaps = 14/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+ + +PD+ FN Sbjct: 5 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + +S G+PV ++ R Sbjct: 65 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIE 176 + + P+V+KPL GSS+G+ +++ +Q PL W D++L+E ++ G E Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL-----PDWPFDADEVLVESFIPGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT VMGD +L V EI FY YE KY+ S H++PA IP Y E RLA AH+ Sbjct: 180 LTAAVMGDRALGVLEITS-DHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHK 238 Query: 237 AIGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+GCRG+SR+D +D ++ LE+N QPGMT S+ PEMAAY G +F EL+ WM Sbjct: 239 ALGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWM 298 Query: 293 VEDASC 298 VE+A C Sbjct: 299 VEEARC 304 >gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] Length = 308 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 142/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+ FN LHG Sbjct: 13 VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK G+PV S+L ++ + + Sbjct: 73 RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I+PPYV+KP GSS+GI ++ + + P L S ++++E Y G E+T Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQL----SDEMPARVMVETYAPGREMTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA +P +I A AH +GC Sbjct: 189 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306 Query: 299 LR 300 R Sbjct: 307 ER 308 >gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 332 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 139/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 37 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 97 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L S + ++++E + G ELT Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTT 212 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 213 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330 Query: 299 LR 300 R Sbjct: 331 DR 332 >gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 319 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 139/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 24 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 84 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L S + ++++E + G ELT Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTT 199 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 200 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317 Query: 299 LR 300 R Sbjct: 318 DR 319 >gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083] gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083] Length = 292 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 192/299 (64%), Gaps = 10/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVS SSG+ACA+AL + G++V+++D + L + PD+ FN LHG GE Sbjct: 1 MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V + G+P+ SI+V + ++H++ Sbjct: 61 DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + + P L + + +++E + G ELT VMGD Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGTMP----EMVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH+A+GCRG+S Sbjct: 177 RPLTVTDILT--DGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234 Query: 245 RSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D SR + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDE-SRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292 >gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 292 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L Q + D++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQ----DMPDEVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLTVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA L AG++V++++V + L ++P + FN LHG Sbjct: 5 VAVLMGGTSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV SI+V+ + Sbjct: 65 TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +++ ++ P L ++ D ++ E+YV G ELTC Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEAPP--QLATNEAESAD-VMAERYVPGRELTCA 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G +L + EI +Y + KY S H+ PA +P DI +++ R + +AH+AIGC Sbjct: 182 VLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG++RSDF DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ W+VEDAS R Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVSWIVEDASLRR 301 >gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 293 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/299 (47%), Positives = 192/299 (64%), Gaps = 9/299 (3%) Query: 5 MGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 MGG S+EREVSLSSG+ACA+AL E G+ V +++ DR + VL LKP N LHG +G Sbjct: 1 MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V G+PV SI+ + + + H+ Sbjct: 61 EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++PPYV+KP GSS+G+ ++ ++ + P L S + ++++E + G ELT VMG Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQL----SEDMPAEVMVETFAPGRELTTTVMG 176 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC+G+ Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234 Query: 244 SRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SR+DF +D + + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293 >gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 293 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 189/300 (63%), Gaps = 11/300 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ C AL +AGF +ID + LA KPD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L +PYTHSG+LASAL+MDK R+K + G+PV S L R +++ H++ Sbjct: 61 DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P L +++++E + G ELT VMG+ Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKLGAEMP----ERVMVEAFAPGRELTTMVMGE 176 Query: 185 -ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +L VT+I +Y Y+ KY S H +PA IP +I + A AH+ IGCRG+ Sbjct: 177 RGALGVTDIIT--DGWYDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGV 234 Query: 244 SRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R+DF +D SR + LEIN QPGMTP S+ PE AA+AG F EL W+VEDASC R Sbjct: 235 TRTDFRWDE-SRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293 >gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA L AG++V++++V + L ++P + FN LHG Sbjct: 5 VAVLMGGTSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV SI+V+ + Sbjct: 65 TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +++ ++ P L ++ D ++ E+YV G ELTC Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEAPP--QLAANEAESAD-VMAERYVPGRELTCA 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G +L + EI +Y + KY S H+ PA +P DI +++ R + +AH+AIGC Sbjct: 182 VLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG++RSDF DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F L+ W++EDAS R Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVSWIIEDASLRR 301 >gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] Length = 306 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S+EREVSLSSG CA+ L + G++V ++D + + LA +PD+ FN LHG Sbjct: 11 IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV G+PV S LV++ Sbjct: 71 RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYVIKP GSS+G+ +++ + P L D++++E + G ELT Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDEMP----DEVMVEAFAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA IP +I+ A AH A+GC Sbjct: 187 VLGDRALTVTDIIT--DGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG +R+DF +D + LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304 Query: 299 LR 300 R Sbjct: 305 NR 306 >gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L S+ H ++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQL--SADMPH--EVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLMVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 311 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/299 (45%), Positives = 194/299 (64%), Gaps = 10/299 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S+EREVSLSSG+ CA AL AG++V ++D R + LA PD+ FN LHG + Sbjct: 18 VLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHGRW 77 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE L YTHSG+LASAL+MDK R+K+++ G+PV S++ + + ++H Sbjct: 78 GEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRARH 137 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 +++PPYV+KP GSS+G+ ++ + + P L ++++E Y G ELT V+ Sbjct: 138 VMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSDKMP----ARVMVETYAPGRELTVAVL 193 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD +L VTEI +Y Y+ KY+ S HV+PA IP +I + A AH+A+GCRG Sbjct: 194 GDRALGVTEIVT--EGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGCRG 251 Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 ++RSDF +D SR + LE+N QPGMTP S+ PE AA++G F L W+VE+A C Sbjct: 252 LTRSDFRWDE-SRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309 >gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] Length = 312 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/306 (44%), Positives = 188/306 (61%), Gaps = 10/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + ++ L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D+++ +W G Q L+E ++ G E+ Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVK--NWTFGPQALVEAFIPGREI 184 Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD +L +T+I + DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D P + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASC 298 VE A+C Sbjct: 305 VEQATC 310 >gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 312 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/306 (44%), Positives = 189/306 (61%), Gaps = 10/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + ++ L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D+++ +W +G Q L+E ++ G E+ Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVK--NWTYGPQALVEAFIPGREI 184 Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD +L +T+I + DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D P + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASC 298 VE A+C Sbjct: 305 VEQATC 310 >gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] Length = 296 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVL+GG S+EREVSLSSG+ CA+AL G++V ++D + + L +KPD+ FN LHG Sbjct: 1 MAVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V G+P+ S L ++ + + Sbjct: 61 RWGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+GI ++ + + P L S ++L+E + G EL+ Sbjct: 121 DHVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQL----SPEMPQEVLVEAFAPGRELSVS 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA+IP++I A AH+A+GC Sbjct: 177 VLGDRALAVTDILT--DGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGC 234 Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+D +D + + LE N QPGMTP S+ PE AA+ G SF L W+VE+ASC Sbjct: 235 RGLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASC 294 Query: 299 LR 300 R Sbjct: 295 GR 296 >gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 283 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/289 (46%), Positives = 184/289 (63%), Gaps = 8/289 (2%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SLSSG+ CA+AL G++V ++D + L+ + PD+ FN LHG FGEDG VQ +LE Sbjct: 1 MSLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 L IPYTHSG+L+SAL+MDK RSK+V S G+P+ S L ++ ++ +H++ PPYV+KP Sbjct: 61 WLRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPY 120 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ ++ + + P L + + D L++E+YV G ELT VMGD +L VTEI Sbjct: 121 NEGSSVGVYIVAEGANTPPKL----AVDMPDTLMVEKYVPGRELTVTVMGDRALAVTEIV 176 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +Y Y+ KY S H +PAK+P I A AH A+GCRG+SRSDF +D Sbjct: 177 T--DGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDED 234 Query: 254 S--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMTP S+ PE AA G +F L+ WMVEDASC R Sbjct: 235 KGLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283 >gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] Length = 296 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 190/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVL GG S+EREVSL SG+ CA+AL G++V ++D V L + PD+ FN LHG Sbjct: 1 MAVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHG 60 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K + G+PV S L + + + Sbjct: 61 RWGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMA 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+G+ ++ ++ + P L ++ + +++EQ+V G ELT Sbjct: 121 AHVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDETMP----EVVMVEQFVPGRELTAT 176 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG +L VTEI +Y Y+ KY + S H+ PA++P DI + A AH A+GC Sbjct: 177 VMGGRALGVTEILT--DGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGC 234 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE G SF + WMVEDASC Sbjct: 235 RGVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASC 294 Query: 299 LR 300 R Sbjct: 295 DR 296 >gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] Length = 301 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 133/300 (44%), Positives = 192/300 (64%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L P D FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V +S G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ + +W HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ D +L VTEI FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 >gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Magnetospirillum magnetotacticum MS-1] Length = 306 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 14/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+ + +PD+ FN Sbjct: 6 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + + G+PV +V R Sbjct: 66 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIE 176 + P+V+KPL GSS+G+ +++++Q PL + W D++L+E +V G E Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPL-----ADWPFDADEVLVESFVPGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT VMGD +L V EI + FY YE KY+ S H++PA I Y E RLA AH+ Sbjct: 181 LTVAVMGDKALGVLEI-TSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHK 239 Query: 237 AIGCRGISRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+GCRG+SR+D +D + ++ LE+N QPGMT S+ PE+AA+ G +F L+ WM Sbjct: 240 ALGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWM 299 Query: 293 VEDASC 298 VE+A C Sbjct: 300 VEEARC 305 >gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] Length = 308 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/300 (45%), Positives = 193/300 (64%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SGK A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ YTHSG++ S +++DK +KQ + G+P+ +V+ ++ S Sbjct: 68 VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +++ D + P+ W D+LL E ++ G ELT Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ V KS FY Y+ KY+ + HV PA +P D+ + ++ LA AH+ + Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + EL+ +VE+A Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306 >gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] Length = 312 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 194/300 (64%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 7 IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+ + I+V ++ + Sbjct: 67 TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +IK+ + +P+ W LL E ++ G ELT Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ +L VTE+ VP S FY YE KY+ +TH+ PA +P DI + R+A AH+ + Sbjct: 187 VAVLGNRALGVTEL-VPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D + ++ LE+N QPGMTP+S+ PE A + G ++ +L+ +V++A Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305 >gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 307 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 188/301 (62%), Gaps = 8/301 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHG 60 VL GGIS ER VSL SG+ +AL +AG++V+ I+V + +A L P D+ FN LHG Sbjct: 8 VLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ L IPYTHSG+ ASA++MDK ++ + G+PV LV + Sbjct: 68 RFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEELAE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P+VIKP GS++G+ ++ + + ++ + SW+ G Q L+E+Y+ G ELT G Sbjct: 128 QDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEI--ARSWSFGGQALVEEYIPGRELTVG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ D +L VT+I P+S FY YE KY+ S H+LPA++ D +K +A AH A+GC Sbjct: 186 VLNDRALTVTDIR-PRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHALGC 244 Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG +RSDF +D ++ LE+N QPG+TP S+ PE AA G F L WMVE A+ Sbjct: 245 RGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQAT 304 Query: 298 C 298 C Sbjct: 305 C 305 >gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601] gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601] Length = 271 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 10/274 (3%) Query: 30 GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 G++V+++D R + L L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LASA+ Sbjct: 5 GYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLASAV 64 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +MDK RSK+V + G+PV S+L ++ + ++H+++PPYV+KP GSS+G+ ++++ + Sbjct: 65 AMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQEGAN 124 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 P + + + D L++E Y G ELT VMGD +L VT+I +Y Y+ KY Sbjct: 125 TPPRIAE----DMPDTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKYKEG 178 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQP 266 S H LPA +P +I+ A AH+A+GCRG+SR+DF +D SR + LE N QP Sbjct: 179 GSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDE-SRGLDGLILLETNTQP 237 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GMTP S+ PE A + G SF L+ WMVEDASC R Sbjct: 238 GMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271 >gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] Length = 303 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 188/300 (62%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVL+GG SSER VSL SG+A AL + G V+ IDV + +A LK PD+ FN Sbjct: 3 VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L +PYTHSGI ASA++MDK ++ ++++ G+PV +V Sbjct: 63 LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKP+ GSS+G+ +++ + ++ + +W G + L+E ++ G EL Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEI--ARTWRFGKEALVESFIPGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T GVMGD +L VT+I ++ FY +E KY + S HV+PA++P + A AHQ Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC+G SR+DF +D + + LE+N QPGMTP S+ PE AAY G S+ EL WMV +A Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300 >gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] Length = 303 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/299 (45%), Positives = 197/299 (65%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 +AVL GGIS+EREVSLS+G +AL AGF+V+ ++V + ++A L KPD FN Sbjct: 4 VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK +K V ++ G+P+ +V Sbjct: 64 LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYV+KP+ GSS+G+ ++K+ + ++ + +W G Q++ E+Y+ G EL Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEI--ARNWRFGPQIMAEEYIAGREL 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD L VTEI FY Y+ KY++ S H +PA+IP D+ + + A AHQA Sbjct: 182 TVAVMGDRPLAVTEIGTGHV-FYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG+SRSDF +D + K+ LE+N QPG+TP S+ PE AA+ G SF EL WMV +A Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299 >gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 321 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/298 (43%), Positives = 192/298 (64%), Gaps = 5/298 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG SSERE+SL SG+ ALE+AG++V+ +D+DR + L KPD+ FN LHG Sbjct: 9 VLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHGTP 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q +++L+ I YTHSG+ ASA+++DK +K++++ +P+ LV R ++ ++ Sbjct: 69 GEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYTKD 128 Query: 123 LISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYV+KP+ GSS+G+ +I + + P+ Q W + LL E ++ G ELT Sbjct: 129 PLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELTVA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ P + FY Y+ KY+ +TH+ PAKIP +I ++ L+ AHQ +GC Sbjct: 189 VMGDKALAVTELC-PNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLLGC 247 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG SRSDF +D + +F LE+N QPGMTP+S+ PE A G + L +VE+A Sbjct: 248 RGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305 >gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] Length = 283 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 129/289 (44%), Positives = 179/289 (61%), Gaps = 8/289 (2%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SLSSG+ACA+AL D G+ V +ID + +G L + PD N LHG +GEDG VQ +LE Sbjct: 1 MSLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + +PY+HSG+LASAL+MDK RSK+ + G+PV PS++ + H++ PPYV+KP Sbjct: 61 WMGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPN 120 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ ++ + + P L S + ++++E + G ELT V+GD L VT+I Sbjct: 121 NEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTTVVGDRPLTVTDIV 176 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +Y Y+ KY S HV+PA IP DI+ A AH A+GCRG+SR+DF +D Sbjct: 177 T--DGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDET 234 Query: 254 --SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + LE N QPGMT S+ PE AA G F +L WMVEDASC R Sbjct: 235 KGAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283 >gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] Length = 316 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/310 (42%), Positives = 192/310 (61%), Gaps = 18/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----VDRSVGLVLAHLKPDLAFNV 57 VLMGG S+EREVSLS+G+ CA AL GF V ++D + L ++PD+ FN Sbjct: 13 VLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVFNA 72 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K + + G+PV SI+ + Sbjct: 73 LHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPKEA 132 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + H+++ PYV+KP GSS+G+ ++ + + P L S + D++++E Y G EL Sbjct: 133 VVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHL----SDDMPDEVMVETYAPGREL 188 Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 T V+GDA +L VT+I +Y Y+ KY S HV+PA+IP +I+ +A Sbjct: 189 TVSVLGDAPGDPGALTVTDILT--DGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246 Query: 233 LAHQAIGCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AH +GC+G+SR+D+ +D + LE+N QPGMTP S+ PE G SF +L Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306 Query: 291 WMVEDASCLR 300 W+VEDA+C R Sbjct: 307 WLVEDATCDR 316 >gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] Length = 316 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 132/300 (44%), Positives = 191/300 (63%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W H D+LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306 >gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] Length = 301 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 132/300 (44%), Positives = 192/300 (64%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L P D FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V ++ G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ + +W HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ D +L VTEI FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 >gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] Length = 321 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 190/300 (63%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W H ++LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306 >gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] Length = 304 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 187/303 (61%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SG ASAL G+ VS ID D ++ + PD+ FN LHG Sbjct: 9 VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V + G+PV S+LV++ + + Sbjct: 69 RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PYV+KP GSS+G+ ++ P+ ++ D L++E+++ G ELT Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDK-PISTIKEE---LPDTLMVEEFIPGYELTVT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VT I +Y ++ KY + S H +PA +P +I+ A AH+ + C Sbjct: 185 VLDGNALTVTNIIT--DGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D LS + LE N QPGMTP S+ PE AAY G SF +++ WMVEDAS Sbjct: 243 RGLSRTDFRWDENLGLS-GLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDAS 301 Query: 298 CLR 300 C R Sbjct: 302 CNR 304 >gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 645 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 15/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +W +G L+E+++ G EL Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 514 Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T GVMGD +L VT+I P D FY Y KY + S H+LPA+I D + + LA Sbjct: 515 TVGVMGDRALTVTDI-TPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVA 573 Query: 234 AHQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 AH+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 574 AHRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGAL 633 Query: 289 LLWMVEDASC 298 WMVE A+C Sbjct: 634 CRWMVEHAAC 643 >gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 315 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 15/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 7 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 67 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +W +G L+E+++ G EL Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 184 Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T GVMGD +L VT+I P D FY Y KY + S H+LPA+I D + + LA Sbjct: 185 TVGVMGDRALTVTDI-TPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVA 243 Query: 234 AHQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 AH+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 244 AHRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGAL 303 Query: 289 LLWMVEDASC 298 WMVE A+C Sbjct: 304 CRWMVEHAAC 313 >gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 313 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 185/308 (60%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVLMGG+S+ER+VSL+SG+ A AL G V ID + ++ L+ PD FN Sbjct: 6 IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +L+ + I YTHSG+ ASA +M+K ++ V ++ G+PV +L+ Sbjct: 66 LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + PYV+KP+ GSS+G+ ++ + + + W+HG +L+E+Y+ G EL Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAIAR--GWSHGPHVLVEEYIPGREL 183 Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GV+ D +L VT+I A FY YE KY++ S H LPA+I + LA AH Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243 Query: 236 QAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +A+GCRG SR+DF +D + ++ LE N QPGMTP S+ PE AAY G + L Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303 Query: 291 WMVEDASC 298 WM++ A+C Sbjct: 304 WMIDHATC 311 >gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 301 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 185/297 (62%), Gaps = 7/297 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S ER++S+ +G+ACA+AL+DAG+ IDVDR++ L + PD+ FN LHG + Sbjct: 6 VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K + G+ + L++ T S Sbjct: 66 GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSME 125 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I PYV+KP+ GSS+ + + + L +W + ++E+Y+ G ELT V Sbjct: 126 -IPFPYVLKPVNDGSSIATYIFNTPDA---EKLSEQAWIYNTHAMMERYIKGRELTVTVF 181 Query: 183 GDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + VTEI +P +D FY++ KY + S H LPA IP + A H +GC Sbjct: 182 MNKPVTVTEI-IPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGC 240 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISRSDF+ + + +F+LEIN QPGMTP S+ PE A+AG SF +L+ +V++A+ Sbjct: 241 RGISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEAT 297 >gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 313 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 188/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL SG+ A ALE G +V++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +++++ + YTHSG++ S +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W DQLL E ++ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + H+ PA+IP +I + + +A AH+ + Sbjct: 188 TAVIGDRALLVTELR-PKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + +L+ ++ +A Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306 >gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 302 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 184/299 (61%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +SE VS S C A AG+ +++VDR + LA +KPD FN LHG Sbjct: 8 VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMD 119 GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V ++ LV + Sbjct: 68 QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 +H + +VIKPL GSS G++++K P S WN QLL E ++ G ELT Sbjct: 128 PEHAMQ-AHVIKPLNDGSSFGVVIVKDGDKAP----ARSLWNTDTQLLCEPFIPGRELTV 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ +L VTEI S FY ++ KY+ S H+LPA IP D+ + A A++A G Sbjct: 183 AVLEGTALCVTEITSENS-FYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG+ R+D+ ++ ++ ++F LEIN QPGMT S+ PE A + G + EL+ ++E A C Sbjct: 242 CRGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQC 300 >gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594] gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594] Length = 323 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 5/298 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG ++EREVSL SG+ A ALE G V++ID+DR V +A PD+ FN LHG Sbjct: 11 VLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHGVP 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Q Sbjct: 71 GEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQQD 130 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 ++ PYV+KP+ GSS+G+ ++ + + P+ W +LL E ++ G ELT Sbjct: 131 PLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELTTA 190 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G +L VTE+ PKS FY ++ KY+ + HV PA IP +I ++ A AH+ +GC Sbjct: 191 VVGGQALAVTELK-PKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRILGC 249 Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG SR+D+ +D +F LE N QPGMTP+S+ PE AAYAG S+ +L+ +VE A Sbjct: 250 RGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307 >gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 321 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE G V++ID+DR V +A KPD+ FN LHG Sbjct: 9 VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 69 VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G ELT Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G +L VTE+ V +S FY +E KY+ + HV PA+IP D+ + R A AH+ + Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D +F LE N QPGMTP+S+ PE A Y G S+ +L+ ++ DA Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307 Query: 297 SCLR 300 R Sbjct: 308 LADR 311 >gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] Length = 321 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 188/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G KV++ID+DR+V LA K D+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ + Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP DI + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D ++ LE+N QPGMTP+S+ PE AA G + L+ +VE+A Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306 >gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] Length = 271 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/278 (44%), Positives = 173/278 (62%), Gaps = 10/278 (3%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D GF+V ++D + L +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+L Sbjct: 1 MRDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVL 60 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASAL+MDK +SK V G+PV S+L R + ++H+++PPYV+KP GSS+G+ ++ Sbjct: 61 ASALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVH 120 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + P L S + + +++E Y G ELT V+GD +L VT+I +Y Y K Sbjct: 121 EAANAPPQL----SDDMPETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAK 174 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV---FWLEI 262 YS S H PA +P +I + A AH A+GCRG+SR+DF +D +R V LE Sbjct: 175 YSVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDE-ARGVDGLIVLET 233 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 N QPGMTP S+ PE AA G SF +L W+VEDASC R Sbjct: 234 NTQPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271 >gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 301 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 184/302 (60%), Gaps = 12/302 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG 60 VLMGG S+EREVSL++GK +AL+ AG++V D+ LV L KPD+ FN LHG Sbjct: 7 VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFTM 118 N+GEDG +Q L++L++PYTHSG+ AS L MDK +K++ S G VP + +F Sbjct: 67 NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + L PYV+KP+ GSS+G+ +I+K + ++ + ++LIE+++DG ELT Sbjct: 127 EGTFL-KMPYVVKPVSDGSSVGVYIIRKKEDA-----EAVRYEDDREILIEEFIDGKELT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G + VTE+ +FY Y KY++ + H+LPA+IP + + A H + Sbjct: 181 CMVLGSQAHVVTELRAS-DEFYDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNIL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCR +SR DF ++P V LEIN PGMT +S+ PE A Y G + L ++VE+ASC Sbjct: 240 GCRSVSRCDFRYNP-EDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASC 298 Query: 299 LR 300 + Sbjct: 299 RK 300 >gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] Length = 305 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 129/298 (43%), Positives = 191/298 (64%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA + +LAF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRR--GEE 128 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L +P P V+KP + GSS+G+ +++ + L ++ + ++LIE ++DG E+ Sbjct: 129 LKLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQV 186 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ +L EI +PK +FY YE KY+ + H+LPA++P +Y EV R AH A+G Sbjct: 187 GILNGKALGAIEI-IPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 246 CDCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302 >gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 314 Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 15/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 ++VLMGG+S+EREVSL SG AL G+ V Q+ +G +++ L +PD+ FN Sbjct: 6 ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + I YTHSG+ SA++MDK ++ V ++ G+PV +V Sbjct: 66 LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYVIKPL GSS+G+ +I+ + + + SW G L+E+++ G EL Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASIAR--SWRFGTSALVEEFIPGREL 183 Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T GVMGD +L VT+I P+ D FY Y+ KY S+HVLPA+I D ++ + LA Sbjct: 184 TVGVMGDRALTVTDI-TPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALA 242 Query: 234 AHQAIGCRGISRSDFLFDPL-----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 AH+A+GCRG SR+DF +D + ++ LE N QPGMT S+ PE AA G ++ +L Sbjct: 243 AHRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQL 302 Query: 289 LLWMVEDASC 298 W+VE A+C Sbjct: 303 CQWLVEQATC 312 >gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21] gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21] Length = 305 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 191/298 (64%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA K ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRR--GEE 128 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L +P P V+KP + GSS+G+ +++ + L ++ + ++LIE ++DG E+ Sbjct: 129 FKLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQV 186 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ +L EI VPK +FY YE KY+ + H+LPA++P +Y EV R AH A+G Sbjct: 187 GILDGKALGAIEI-VPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 246 CDCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302 >gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] Length = 314 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 188/301 (62%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE AG +V++ID+ R V L +PDL FN LHG Sbjct: 7 IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +L+L+ I YTHSG+ S +++DK+ +KQ + G+P+ +V + + Sbjct: 67 SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + P+ + W ++LL E Y+ G ELT Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ +L VTE+ PK+ +Y ++ KY+ + HV PA+IP +I + + LA AH+ + Sbjct: 187 TAVLGNRALGVTELK-PKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245 Query: 239 GCRGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG SRSDF +D R V F LE+N QPGMTP+S+ PE + G + L+ +V++ Sbjct: 246 GCRGASRSDFRWDD-ERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDE 304 Query: 296 A 296 A Sbjct: 305 A 305 >gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] Length = 332 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 186/304 (61%), Gaps = 9/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++EREVSL SG + ALE G +V+QID+DR V + KPD+ FN LHG Sbjct: 18 VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + GVP +V + Sbjct: 78 VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ +D ++ P++ W DQLL E ++ G ELT Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G +L VTE+ + + FY YE KY+ + HV PA IP +I + A A Sbjct: 198 TAVIDGADGPRALGVTELII-EHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 H+ +GC G SR+DF +D + + +F LE N QPGMTP+S+ PE A +AG S+ EL+ + Sbjct: 257 HKVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELI 316 Query: 293 VEDA 296 V +A Sbjct: 317 VREA 320 >gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 313 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE G KV++ID+ R + LA PD+ FN LHG Sbjct: 8 VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ AS +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127 Query: 121 QHLISPPYVIKPLKGGSSLG--IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G I+ ++ + P+ W D LL E Y+ G ELT Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD++L VTE+ PKS FY ++ KY+ + H+ PA IP +I + + +A AH+ + Sbjct: 188 TAVLGDSALLVTELR-PKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D +F LE+N QPGMTP+S+ PE A G + L+ +V +A Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306 >gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel] gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel] Length = 354 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S K + AL G+KV+ ID+ + L +KPD+ FN LHG Sbjct: 58 IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKP+ GSS+GI VI ++ + + +GDQ++IE+Y+ G EL Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFN---FANYDFPYGDQVIIEKYIKGRELQVA 234 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA IP ++Y ++ + ++ + C Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +FL + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351 >gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] Length = 270 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 122/278 (43%), Positives = 172/278 (61%), Gaps = 11/278 (3%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + AGF V +ID + L KPD FN LHG + EDG+VQ +LE L IPYTHSG+L Sbjct: 1 MRTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVL 60 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA +MDK ++K + + G+P S+L ++ +++ H++ PPYV+KP GSS+GI ++ Sbjct: 61 ASATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVM 120 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + S P + + + D +++E Y G ELT V+G +L VT+I V +Y Y K Sbjct: 121 EGDSPP-----TLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASK 173 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEI 262 Y S HV+PA +P DI++ A AH A+GCRG+SR+D+ +D SR + LE Sbjct: 174 YEVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDE-SRGLDGLILLET 232 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 N QPGMTP S+ PE AA G SF +L+ WM+EDASC R Sbjct: 233 NTQPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270 >gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] Length = 321 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 191/299 (63%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDGIELT 178 + PYVIKPL GSS+G+ VI ++ D + +N +G Q++IEQY+ G EL Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEE-----DDFNFADYNFPYGYQVIIEQYIKGRELQ 199 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + Sbjct: 200 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTM 259 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 260 NCKGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington] gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str. Wilmington] Length = 321 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 191/298 (64%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ ID+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + PYVIKPLK GSS+G+ ++ ++D +D + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFHFIDY----DFPYGEDIIIEQYIQGQELQV 200 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ +L V EI + K+ FY YE KY+ + HV PA++P ++YK++ + ++ I Sbjct: 201 ALLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTIN 260 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG SF L+ +++ AS Sbjct: 261 CKGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318 >gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] Length = 321 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+++GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] Length = 308 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 185/299 (61%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSL SG A AL G+ IDVDR+V + + AF LHG Sbjct: 9 IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ + G+ V P +V R D Sbjct: 69 RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128 Query: 120 SQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ P P V+KP + GSS+G+ +++++ L+ ++ + ++LIEQ++ G E+ Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESE--LEAAMQDAFKYDREILIEQFIKGAEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L EI VPK +FY +E KYS + H+LPA++P D+Y++V R H+A+ Sbjct: 187 VGILEDKALGAIEI-VPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G SR DFL + LE+N PGMT +S+ PE+A +G F EL+ ++ A+ Sbjct: 246 GCSGYSRVDFLVTT-EGLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303 >gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] Length = 321 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318 >gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] Length = 321 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+ V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E] gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22] Length = 321 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ +D+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ + V + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFN---FTDYDFPYGEDIIIEQYIQGQELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI + K+ FY YE KY+ + HV PA +P ++YK++ + ++ I C Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] Length = 321 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFN---FANYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] Length = 277 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 120/285 (42%), Positives = 173/285 (60%), Gaps = 18/285 (6%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + AGF V +ID + L +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+L Sbjct: 1 MRTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVL 60 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA++MDK ++K++ + G+P S+L + +++ H+++PPYV+KP GSS+GI ++ Sbjct: 61 ASAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVM 120 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSD 198 + P + + D +++E Y G ELT V+G +L VT+I V Sbjct: 121 EGDRPP-----ELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVV--DG 173 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--- 255 +Y Y KY STH +PA +P DI + A AH +GCRG+SR+D+ +D SR Sbjct: 174 WYDYAAKYEIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDE-SRGLD 232 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 233 GLILLETNTQPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277 >gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 317 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSSTIM-EKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 315 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSSTIM-EKMIVEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 183 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A A G +F EL+ ++ED+ Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299 >gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] Length = 317 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSSTIM-EKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] Length = 321 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + I+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 321 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+E EVSL S + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] Length = 321 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFN---FANYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] Length = 329 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE+ G KV++ID+DR V +A +KPD+ FN LHG Sbjct: 13 IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 73 VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G E+T Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G +L VTE+ PKS FY ++ KY+ + HV PA IP I +A A Sbjct: 193 AAVVDFPEGPRALAVTELK-PKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKA 251 Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 H+ +GC+G SR+DF +D + +F LE N QPGMTP+S+ PE A +AG + L+ + Sbjct: 252 HKVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETI 311 Query: 293 VEDASCLR 300 + A+ LR Sbjct: 312 I--AAALR 317 >gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 321 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY++ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM +SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] Length = 313 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 122/301 (40%), Positives = 187/301 (62%), Gaps = 11/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ER+VSL SG A AL G+ + +DV +V L+L K DLAF LHG Sbjct: 11 IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ ++ G+ + P V + + Sbjct: 71 RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ L P V+KP++ GSS+G+ ++KK + + L ++ + +L+E+Y+ G E+ Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAAL--DEAFRYDTLVLVEKYIKGQEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ + + EI VPK++FY +E KYS + H+ PA++ +Y++VQ+ AHQA+ Sbjct: 189 VGILANQPIGAIEI-VPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297 GC G R DFL + + LE+N PGMT +S+ PE+A AG SF L VE + Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEAL----VEQIA 302 Query: 298 C 298 C Sbjct: 303 C 303 >gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] Length = 310 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 118/291 (40%), Positives = 182/291 (62%), Gaps = 6/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ + + V P + R Sbjct: 71 RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ S P V+KP + GSS+G+ ++KK+ + ++ ++ ++L+EQ++ G E+ Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAMKEAFRYDR--EILVEQFIKGSEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L EI VPK++FY ++ KYS + H+LPA++P ++Y++V R AH+A+ Sbjct: 189 VGILEDKALGAIEI-VPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 GC G SR DFL + LE+N PGMT +S+ PE+A +G F +L+ Sbjct: 248 GCSGYSRVDFLVTE-EGACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLV 297 >gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 323 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV--DGIELT 178 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGQGRELQ 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320 >gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18] gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18] Length = 305 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 194/298 (65%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L G++ IDV R + LA + + AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P +++R + Sbjct: 71 RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRG--EE 128 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L +P P V+KP + GSS+G+ ++++ Q + L + ++ + ++LIE ++DG E+ Sbjct: 129 LKLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQV 186 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ ++ EI VPK++FY YE KY+ + H+LPA++P +Y+ V + AH A+G Sbjct: 187 GILDGRAMGAIEI-VPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C SR DFL + + + + LE+N PGMT +S+ PE+A +G F +L+ ++ AS Sbjct: 246 CDCYSRVDFLVNE-AGECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302 >gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] Length = 305 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 187/304 (61%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG S+EREVSL +G A ALE+ G+ V ID D+++ L + D+ F +HG Sbjct: 8 IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LEL++IPYT SG+LASAL++DK +K++V+ GV + LV+ D Sbjct: 68 RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVD-VNSDV 126 Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +++ P V+KP++ GS+LGI + + + Q+ ++ ++L+E Y+DG E Sbjct: 127 DDIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAIAQARDYDR--RVLVEDYIDGRE 184 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T VM +L + EI VP+S FY Y KY+ + +++PA +P YK +Q+ A ++ Sbjct: 185 VTVSVMNGRALSIIEI-VPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYA 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++GCRG +R DF+ ++LE+N PGMT S+ P+ AA G F +L+ +++DA Sbjct: 244 SLGCRGAARVDFMV--TDDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDA 301 Query: 297 SCLR 300 S R Sbjct: 302 SLDR 305 >gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 337 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/318 (38%), Positives = 186/318 (58%), Gaps = 23/318 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SG+A AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVI--------------------KKDQSIPLDLLQSSS 159 ++ I PYV+KP+ GSS+G+ ++ KK S LD + ++ Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 D +++E+Y+ GIEL V+ D ++ EI PK+ FY YE KY+ + H+ PA+I Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEI 243 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P +IYK A HQ +GC+ ISRSDF ++P + + LEIN PG T +S+ PE+A Sbjct: 244 PDNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAK 303 Query: 280 YA-GYSFRELLLWMVEDA 296 A G +F EL+ ++ED+ Sbjct: 304 LAKGINFNELVKIIIEDS 321 >gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] Length = 308 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG+ AL + G +V+ ID L L D+ + LHG Sbjct: 3 VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119 +GEDG VQ++LE+ IPYT SG+LASAL+MDK R+K + ++ G+ V +L+ +R ++D Sbjct: 63 KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122 Query: 120 SQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P V+KP + GSS G + I D+++ + ++ ++ +L+EQY+ G E Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNG-LTIAMDEAMLREGIE-KAFACDSAVLVEQYIKGKE 180 Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LT V+G + +L V EI +PK++FY YE KY+ S HV PA+I D+ EVQ+ A Sbjct: 181 LTVPVIGNFGKEEALPVIEI-IPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAV 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LAH+A+GC G SRSDFL K + LE N PGMTP+S+FP+ A G S+ ELL Sbjct: 240 LAHRALGCSGYSRSDFLVSE-EGKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERF 298 Query: 293 VE 294 +E Sbjct: 299 IE 300 >gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] Length = 320 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 24 IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S + + SI+V++ + Sbjct: 84 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI ++ + +GDQ++IE+Y+ G E Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFN---FADYDFPYGDQVVIERYIKGREFQVA 200 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA + ++Y+++ + ++ + C Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317 >gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 317 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 183/298 (61%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + PYV+KP+ GSS+G+ +I + L+L +SS ++++IE+Y+ GIEL Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSSTI-MEKMIIEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ + ++ EI PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 185 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDS 301 >gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 315 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 183/298 (61%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + PYV+KP+ GSS+G+ +I + L+L +SS ++++IE+Y+ GIEL Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSSTI-MEKMIIEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ + ++ EI PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 183 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDS 299 >gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 310 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 180/296 (60%), Gaps = 7/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SG A AL GF +DV R + LVL+ AF LHG Sbjct: 9 IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ S G+ P R S Sbjct: 69 RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128 Query: 121 -QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 HL P V+KP++ GSS+GI ++K++ + + ++ H D++L+EQ++ G E+ Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVKEESQLAAAV--KLAFRHDDEILVEQFIKGQEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D + EI V +++FY +E KY+ + H PA++ +Y+E R+ AH A+ Sbjct: 187 VGILDDRPMGAIEI-VSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMV 293 GCR SR D L P + + + LE+N PGMT +S+ PE+AA A F EL+ ++ Sbjct: 246 GCRCYSRVDLLVTP-AGECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERII 300 >gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15] gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter metallireducens GS-15] Length = 627 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 125/300 (41%), Positives = 188/300 (62%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ERE+SLSSG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ ++ G+ + P +LV T D Sbjct: 71 RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V+KP + GSS+G+ ++KK + L +++ + +++L+E++V G E+ Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKAEE--LAAALEAAFRYDNEILVEKFVKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ EI VPK +FY +E KY+ + H+ P +P D+Y+++ AH+A+ Sbjct: 189 VGILDDRAMGAIEI-VPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297 GC G SR DFL F LE+N PGMT +S+ PE+A AG +F EL+ ++ AS Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306 >gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] Length = 304 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 183/305 (60%), Gaps = 14/305 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG F Sbjct: 7 ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120 GEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N + ++ Sbjct: 67 GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKLNI 126 Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 LI P V+KP+ GSS+ + + K I +L S+N ++LIE+++ G E Sbjct: 127 IKLIEKILKFPVVVKPINEGSSVHVYICDKTNIIK-NLKALKSYN---EILIEEFIPGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + +M + SL E+ PK FY YE KY SS + H++P + + ++ +A AH Sbjct: 183 IQVAIMNNKSLGAIELE-PKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARAAH 241 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++D Sbjct: 242 KIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKD 299 Query: 296 ASCLR 300 AS R Sbjct: 300 ASINR 304 >gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] Length = 304 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 182/309 (58%), Gaps = 22/309 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +G A L+ G+++ + D+S+ + KP + FN LHG F Sbjct: 7 ILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----------L 112 GEDG +Q ILE +IPYTHSG++AS+++MDK SK++ + I L Sbjct: 67 GEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINLEL 126 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 VN+ + + P V+KP+ GSS+ + + K ++I L + S+ Q++IE+++ Sbjct: 127 VNKINKE----LKFPVVVKPINEGSSVNVFICTK-KNINQILKKMKSY---KQVMIEEFI 178 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLA 231 G E+ +MG+ L E+ PK FY Y+ KY++ T H++P + + EV +A Sbjct: 179 GGREIQVAIMGNKKLGAIELK-PKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIA 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+ IGCRG++RSDF F K + LEIN QPGMT +S+ PE+AAY G SF +L+ W Sbjct: 238 LKAHKKIGCRGVTRSDFKF--YKNKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINW 295 Query: 292 MVEDASCLR 300 +++DAS R Sbjct: 296 ILKDASTKR 304 >gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 339 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 180/312 (57%), Gaps = 17/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S ER++SL SGKA AL+ + +IDV+ + L + PDLAF LHG Sbjct: 19 ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S G+ +++R + Sbjct: 79 PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138 Query: 121 QHL-ISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLL-------------QSSSWNHGDQ 165 ++ I PYV+KP+ GSS+G+ I + + L + + W D Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++IE+Y+ GIEL V+ D + EI PK+ FY Y+ KY++ + H+ PA+IP +IY+ Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIR-PKNKFYDYKAKYTNGFAEHIFPAEIPDNIYE 257 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS 284 A H+ +GC+ ISRSDF ++P + LEIN PG T +S+ PE+A G Sbjct: 258 MTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGID 317 Query: 285 FRELLLWMVEDA 296 F EL+ ++ED+ Sbjct: 318 FNELVKIIIEDS 329 >gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM] Length = 305 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 186/304 (61%), Gaps = 16/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK ALE+ G +V ID L L+ D+ + LHG Sbjct: 3 VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ++LE+ +PYT SG+LASAL+MDK R+K + ++ G+ + +L+ Sbjct: 63 KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122 Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P V+KP + GSS G + I D+++ + + ++ +L+EQY+ G E Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNG-LTIAMDEAMLREGID-KAFACDTAVLVEQYIKGRE 180 Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LT V+G +A+L V EI +PK++FY YE KYS S HV PA++P + +EVQ A Sbjct: 181 LTVPVLGNHGAEAALPVIEI-IPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAI 239 Query: 233 LAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AH+A+GC G SRSDFL D L+ + LE N PGMTP+S+FP+ A G S+ ELL Sbjct: 240 KAHRALGCSGYSRSDFLISEDGLA---YILETNTLPGMTPLSLFPDSARAVGISYGELLE 296 Query: 291 WMVE 294 +E Sbjct: 297 RFIE 300 >gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] Length = 306 Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG+A +ALE G++V IDV+R V + +LAF LHG Sbjct: 5 IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++ G+PV + DS Sbjct: 65 PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124 Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+K GSS+G+ ++++++ + + + ++ G ++L+E+++ G E Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDLEARITDAVAYG-GTRVLVEKFIAGPE 183 Query: 177 LTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 LT V+G+ L + EI V + Y YE KY+ S H++P ++P ++ + V LA Sbjct: 184 LTAAVLGNREPRVLPLIEI-VSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALR 242 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++A+GCRG +R D + + F LEIN PG+T VS+FP+ A AG SF +L+ +V Sbjct: 243 AYRALGCRGFARVDLIVS--GNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLV 300 >gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] Length = 304 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 184/305 (60%), Gaps = 14/305 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG F Sbjct: 7 ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120 GEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N + ++ Sbjct: 67 GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNI 126 Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 LI P V+KP+ GSS+ + + K +I +L S+N ++LIE+++ G E Sbjct: 127 IKLIEKNLKFPVVVKPINEGSSVHVYICDK-TNILKNLKVLKSYN---EILIEEFIPGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + +M + SL E+ P+ FY YE KY SS + H++P + + ++ +A AH Sbjct: 183 IQVAIMNNKSLGAIELE-PRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAH 241 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++D Sbjct: 242 KIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKD 299 Query: 296 ASCLR 300 AS R Sbjct: 300 ASINR 304 >gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 305 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 178/297 (59%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL +GKA + AL G++V+ ID R + L ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++ G+ ++ R Sbjct: 71 RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L P V+KP + GS++GI ++ +Q + L ++ H D +L+EQ++ G E+T G Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQELAAGL--EEAFRHDDLVLVEQFIAGAEVTVG 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L + ++ VPK FY Y+ KY+ + ++LPA +P +Y +Q A +AIGC Sbjct: 189 VLDGQPLPIIQV-VPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G +R DF+ + LE+N PGMT S+ P+ A G SF EL+ ++ AS Sbjct: 248 CGAARVDFMVT--DTGFYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGAS 302 >gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400] Length = 316 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 184/297 (61%), Gaps = 17/297 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A +AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P +V R Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRR----- 125 Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P P V+KP + GSS+G+ ++K + +P L +++ + D +L+E+++ Sbjct: 126 GEAVDPVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIK 183 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+ G++ D ++ EI VP ++FY +E KY++ + H+ P +P ++Y+ + Sbjct: 184 GREIQIGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGET 242 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELL 289 AH+A+GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ Sbjct: 243 AHRALGCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLV 298 >gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] Length = 305 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 186/299 (62%), Gaps = 3/299 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S ER VS+ SGKAC A++ G++V + D +++ + + PD+ FN LHG + Sbjct: 9 ILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHGKY 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++ + ++ + + Sbjct: 69 GEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIKNK 128 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + +++KP+ GSSLG+ + + + L+ E Y++G E+ V+ Sbjct: 129 ISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTAVL 188 Query: 183 GDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 G+ ++ EI +PK +FY Y+ KYS S + H++P KIP + +++R+A +AH+++ CR Sbjct: 189 GNKAIGSVEI-IPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLKCR 247 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++RSDF P + K++ LEIN QPGMT +S+ PE+A G SF EL+ WM++DAS R Sbjct: 248 GVTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASINR 305 >gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 302 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 186/301 (61%), Gaps = 9/301 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61 +L+GG S ER+VSLS+G+A AL G++V + VD +G + DLAFN LHG Sbjct: 8 LLVGGPSKERKVSLSTGRAVYLALRKLGYEV--VKVDPKIGSKNFSQHNCDLAFNALHGQ 65 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 FGEDG +Q++LE +IPYTHSG+ +SA++MDK++SK+ P V + D Sbjct: 66 FGEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKA-KIKTPKFKVIKKLSDLN 124 Query: 122 HLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 ++IS +V+KP+ GSS+G+++ K S+ ++ +G +LL E++++G E+ Sbjct: 125 NIISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAA 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +MG +L EI P +FY Y KYS + + H++PA + IY +V ++A AH+ + Sbjct: 184 IMGSKALGAIEIK-PSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLS 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++RSDF +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S Sbjct: 243 CKGVTRSDFRVTR-DNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTN 301 Query: 300 R 300 R Sbjct: 302 R 302 >gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 182/301 (60%), Gaps = 16/301 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSEREVSL +G A AL G+ V +ID+DR++ L D AF LHG Sbjct: 3 IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P P+ + F + Sbjct: 63 KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIP-TPNYIAFSFDENP 121 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P VIK + GS++GI + Q +P + + + QLL+E++ Sbjct: 122 NFEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVLEIDK--QLLVEEF 179 Query: 172 VDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++G+E+T V+G+++ L + EI V K+ FY YE KY+ S H++P +I ++ ++ Sbjct: 180 IEGVEVTASVLGNSNPVVLPLIEI-VSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAI 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A ++A+GCRG +R DF+ D + + LE+N PGMT S+FP+ A G SF +L Sbjct: 239 EYARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDL 298 Query: 289 L 289 + Sbjct: 299 V 299 >gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] Length = 304 Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/298 (38%), Positives = 189/298 (63%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+A +AL++ G+ V ID + + K D+AF VLHG Sbjct: 3 VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 +GE+G VQ +LE++ IPYT SG+LASAL+MDK SK++ G+PV P ++N+ Sbjct: 63 GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + S S P V+KP + GSS+G+ ++K ++ + + ++ G +++IE++++G E Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + GV+GD +L E+ PK FYSYE KY+ + ++LP +I +Y++++ L AH+ Sbjct: 181 IHIGVLGDKALGGVEVR-PKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ C+G +R D + D + LE+N PGMT S+ P++A+ AGY F+ L+ ++E Sbjct: 240 SLNCKGGTRVDMIVDQQGNP-YVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILE 296 >gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] Length = 316 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 183/292 (62%), Gaps = 7/292 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P +V R T+D Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ ++K + +P L ++ + D +L+E+++ G E+ Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ EI VP ++FY +E KY++ + H+ P +P ++++ + AH+A+ Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELL 289 GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLV 298 >gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] Length = 314 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 183/305 (60%), Gaps = 17/305 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLHGN 61 VL GG S EREVSL SG+A A AL GF+VS +D++ SV ++A +PD+AF LHG Sbjct: 7 VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVAD-RPDVAFIALHGK 65 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +L++LEIPY S +L SA+ ++K +K++++ +P P +++N Sbjct: 66 YGEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKI 125 Query: 122 HL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 L + P V+KP GSS+G ++KK++++ L ++ + +L++E++ Sbjct: 126 GLAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERF 183 Query: 172 VDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +DG E+T V+G+ +V + V +++FY YE KY+ S H++PA+I V+ Sbjct: 184 IDGTEVTASVLGNEDAEVLPLIEIVAENEFYDYEAKYTPGMSHHIIPARISERARVRVEE 243 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A + A CRG SR DF+ D + F LEIN PGMT +S+FP+ A AG SF +L Sbjct: 244 IALKTYHAFKCRGFSRVDFIVDK-NDNPFVLEINTIPGMTSLSLFPDAARAAGMSFEDLC 302 Query: 290 LWMVE 294 +VE Sbjct: 303 ARLVE 307 >gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 317 Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 178/300 (59%), Gaps = 16/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D L +P D+AF LH Sbjct: 12 VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE + IPYT SGI AS+++++K ++K + G+ V S+ ++ + Sbjct: 72 GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++LIS P V+KP GSSLG+ +++ I + + + + + ++EQ++ Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDV--EAMVEQFI 189 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT GV+G+ +L V +I + +FY+Y KY++ S H+ PA + D+ + Q Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH +GCRG+SR+D + D + W LE N PGMT S+ P+ A AG F++L Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVD--ADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQL 307 >gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E] gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E] Length = 307 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 181/302 (59%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + G+ ID L + AFN+LHG Sbjct: 9 IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V R T+D Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172 + + P ++KP + GSS+G+ + + + +DL + H D +LIE+++ Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAVDL----ALTHDDTVLIEEWL 184 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 GIE+T V+ D L +I +P+ +FY Y+ KY S N+ ++ PA + + +E+Q+L Sbjct: 185 SGIEMTVPVLDDQVLPAVQI-IPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVK 243 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ +GCRG SR D + D + +E+N PGMT S+FP+ AA GYSF +L++ + Sbjct: 244 RAYDVVGCRGWSRIDVMTDA-NGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKI 302 Query: 293 VE 294 +E Sbjct: 303 LE 304 >gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] Length = 325 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 180/306 (58%), Gaps = 17/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVL GGIS ERE+SL+SGK A+AL +AG+ ++ VD L+ L+ D+AF Sbjct: 17 VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEM-VDPGERGFLSRLENGNYDVAFIA 75 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG+ Q ILE L IPYT S LAS ++MDK SK + G+PV PS+ R Sbjct: 76 LHGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRAD 135 Query: 118 MDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 M S ++ P +KP+ GSS GI ++K + + ++ HGD++++E V Sbjct: 136 MPSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAI--ELAFEHGDKVMVEHRVF 193 Query: 174 GIELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E + +GD +L V EI +P +S+FY E+KY+ N H +PA++P D+Y +VQ Sbjct: 194 GVECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQ 253 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH+A+G GISR+D + LE N PGMT S+ P+ A +AG +F +L Sbjct: 254 DIACRAHEALGLFGISRTDVIV--TEDGPIILETNNIPGMTSESLVPDEARHAGIAFSDL 311 Query: 289 LLWMVE 294 +VE Sbjct: 312 CAELVE 317 >gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] Length = 315 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 173/302 (57%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK+ +ALE G +V +D + +L+ + A LHG Sbjct: 3 VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+LE+ IPYT SG+LASAL+MDK RSK G+ + +LV R Sbjct: 63 KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q + P V+KP + GSS G+ + +Q + + ++ D +LIEQ++ G E Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180 Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +T V+G + +L V EI +PK++FY YE KY+ S H+ PA+ + +Q A Sbjct: 181 VTVPVLGAKGQEKALPVIEI-IPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAV 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LAHQ +GC G SR+DFL P LE N PGMT S+FP+ A G + EL+ Sbjct: 240 LAHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETF 298 Query: 293 VE 294 +E Sbjct: 299 IE 300 >gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 306 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 170/296 (57%), Gaps = 5/296 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+SSERE+S+ SGKA + + V IDV+RS+ + K D+A+ LHG Sbjct: 15 IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L IPYT SGI ASA S+DK SK++ + ++ +F Sbjct: 75 PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGTVP 134 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P V+KP+ GS++G+ ++K+ + + + +GD+ LIEQ+++G E+T G Sbjct: 135 E-IKKYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKE--VFKYGDEALIEQFIEGKEVTVG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI VPK FY ++ KY S H++PA I + Y+ VQ A ++ C Sbjct: 192 VLNGKALPVVEI-VPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R I R D + D R V+ E N PGMT S+ P+ + GYSF L+L + E A Sbjct: 251 RAICRVDMIVDRKDR-VWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305 >gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] Length = 313 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 179/300 (59%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 12 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+P PS+ + + + Sbjct: 72 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +DS + V+KP GS+LG+ +++ +I + +++ ++L+E+Y+ G Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 189 Query: 176 ELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V+GDA ++ I VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 190 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 249 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+ C G+SRSDF+ + + LE N PGMT S+ P+ A AG SF EL ++ Sbjct: 250 AHRALSCEGVSRSDFILEE-DGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 308 >gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 314 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+SSER+VSL +G A A AL G+ V +IDV + V L K D+A+ LHG Sbjct: 14 VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P P T Sbjct: 74 RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + S P V+KP + GSS+G+ V K ++ L ++ ++ + LL+EQ++ G E Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAY-LAAVEDAA-RYAGTLLVEQFIPGRE 191 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAH 235 + V+ D +L V E+ V + +FY + KY+S + T ++ PA +P D Y+ V + AH Sbjct: 192 VQGAVLDDEALGVIEVVVAR-EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAH 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC+G SRSD + VF LE N PGMT S+ P++AA G F L +++ Sbjct: 251 RALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQG 309 Query: 296 AS 297 AS Sbjct: 310 AS 311 >gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 315 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 184/303 (60%), Gaps = 14/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GGIS EREVSL+SG+ AL +AGF+V+ +D D+ L D+AF LH Sbjct: 12 VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118 G +GEDG +Q +LE++ +PY SG+ +SAL+MDK++SK + G+ PSI + T+ Sbjct: 72 GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131 Query: 119 DSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + ++ V+K GS+LG+ +++ +I + ++ + +++L+E+Y+ G Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAIEKARELD--NEILVERYIKGK 189 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G+ +L + EI VP +DFY YE KY S H+ PA + + +++Q +A Sbjct: 190 ELTVAVIGNDNPRALPIIEI-VPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAV 248 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+ C G+SRSDF+ D +W LE N PGMT S+ P+ A AG SF EL Sbjct: 249 QAHKALECAGVSRSDFILD--DEGDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTM 306 Query: 292 MVE 294 ++E Sbjct: 307 LIE 309 >gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] Length = 305 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/302 (40%), Positives = 175/302 (57%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSLSSGK AL+ G +V ID L L DL F LHG Sbjct: 3 IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+L+LL IPY +G+ SAL+MDK ++K G+ V ++++ FT D+ Sbjct: 63 RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122 Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGI 175 + P V+KP + GS++G+ V + ++ +LLQ ++ H D +LIE+++ G Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEE----ELLQGIEEAFRHDDTILIEEFIAGT 178 Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T V+G+ SL V EI VPK+ Y YE KY+ S H++PA+I + VQ+ A Sbjct: 179 EVTVAVLGNKGEERSLPVVEI-VPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAA 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQA+GC SR DF+ L++N PGMTP S++P+ A G S+ E++ Sbjct: 238 VRAHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQT 297 Query: 292 MV 293 V Sbjct: 298 FV 299 >gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 308 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 175/304 (57%), Gaps = 14/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V+ +DVD + L L+ D+AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 +GEDG VQ +LE + IPYT SG+ ASA+ MDK SK + + G+ V I F Sbjct: 69 RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDV---IEYRAFPPAR 125 Query: 117 --TMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D + L P V+KP GSS+G+ ++ KD + D + ++ GD +++E+YV Sbjct: 126 AAEIDLRDLPFGVPCVVKPAGEGSSVGVQIV-KDAARLADACREAARYKGD-VVVERYVK 183 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+ V+ +L EIA P ++FY Y KY++ + + PA+IP V A Sbjct: 184 GTEVNVAVLEGKALGAIEIA-PANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEA 242 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+ +GC G++R DF+ P F LE+N PGMT S+ P++AA G +F EL ++ Sbjct: 243 AHRGLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERIL 301 Query: 294 EDAS 297 + A+ Sbjct: 302 DGAA 305 >gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] Length = 307 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 178/300 (59%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 6 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+ PS+ + + + Sbjct: 66 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +DS + V+KP GS+LG+ +++ +I + +++ ++L+E+Y+ G Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 183 Query: 176 ELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V+GDA ++ I VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 184 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 243 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+ C G+SRSDF+ + + LE N PGMT S+ P+ A AG SF EL ++ Sbjct: 244 AHRALSCEGVSRSDFILEE-DGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 302 >gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] Length = 325 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 173/306 (56%), Gaps = 16/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 + VL GG S+ER+VS +GKAC ALED G +V ID D + L L + D + Sbjct: 3 IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113 LHG GEDG+VQ +L+ L +PY SG LASAL+MDK+ SKQ+ + G+P P V Sbjct: 63 LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPT-PDWQVWDDQ 121 Query: 114 NRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQ 170 N T D + P VIKP GS++GI +++ ++S L+L +S S ++ +E+ Sbjct: 122 NPLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSVS----SRIFLER 177 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 YV G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 178 YVPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAA 237 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+QA+GC G++R D DP + LE+N PGMTP S+ P+ AA G++F EL+ Sbjct: 238 GLKAYQALGCEGLARVDLRVDP-EENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVE 296 Query: 291 WMVEDA 296 M++DA Sbjct: 297 RMLQDA 302 >gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI] gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Pelotomaculum thermopropionicum SI] Length = 318 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 181/307 (58%), Gaps = 17/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +AL+ + +IDV V + + DLAF LHG Sbjct: 5 VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L+IPYT SG+LASAL+MDK +K+++ G+P P +LV + Sbjct: 65 RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L + P V+K GS++G+ + K++ + L ++++ L+EQ Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G E+T ++G+ +L + EI V + Y Y+ KY++ S H++P +IP + Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEI-VSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAI 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LA +++GCRG++R DF+ D F LE+N PGMT S+FP+ A AG F + Sbjct: 242 KKLAVSTFKSLGCRGLARVDFIVDKQGNP-FILEVNTIPGMTATSLFPDAARAAGIEFPD 300 Query: 288 LLLWMVE 294 L+ +VE Sbjct: 301 LIEKLVE 307 >gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] Length = 308 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 182/298 (61%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A AL++ G++ +IDV + L L+ +KPD+ F LHG Sbjct: 3 VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE++ +PYT GILASAL+M+K+ +K+ + S +P I +++ Sbjct: 63 KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122 Query: 121 QHL-----ISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + L P P V+K GSSLG+ ++++++ + L + ++ + +L+E++++G Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180 Query: 175 IELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +E+T V+G+ L + EI K Y YE KY+ S H++P ++P ++V+ LA Sbjct: 181 VEVTAAVLGNRKPVVLPLIEIVADKG-VYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELA 239 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ + CRG SR DF+ D + LE+N PG+T VS+FP+ A AG SF EL+ Sbjct: 240 LATYRWLDCRGFSRIDFMVDHKGNP-YILEVNTIPGLTEVSLFPDAARAAGISFGELV 296 >gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 185/308 (60%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV+ GG S ER++SL +GKA ALE G V +D + + L + D+AF LH Sbjct: 5 VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117 G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++ GV P I N + Sbjct: 65 GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ L++ P V+KP GSSLG+ +IKK +++ + +++ + +++L+E+ Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAV--DTAFEYDNEVLVEK 182 Query: 171 YVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 Y+ G E+T G++G+ L V I PK+ Y +E KY+ + V+PA++ +IY + Q Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A++ + C G++R+D + K + LE+N PGMT S+ P+ A AG F EL Sbjct: 243 KIANKAYRVLKCSGMARADLIVSK-EGKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301 Query: 289 LLWMVEDA 296 +L ++E A Sbjct: 302 VLEILEYA 309 >gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.] Length = 312 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 178/300 (59%), Gaps = 13/300 (4%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNF 62 + GGIS EREVS SG AL+ + V + D + + LV D A +LHG F Sbjct: 1 MSGGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPF 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----M 118 GEDG +Q +L+LL+IPY SG+L SA++M+K +KQ+ G+PV P I++ + Sbjct: 61 GEDGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYK 120 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P+++KP+ GGSS+G+ ++K D+S + S+++ D +LIE +++GIE+T Sbjct: 121 TCEKRLGSPFIVKPVSGGSSIGVSIVKSDKS--FNEAVESAFSCDDTVLIETFIEGIEIT 178 Query: 179 CGVMGDASLD---VTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 GV+G+ L+ + EI K+ F+ Y KY + + + PA+I + ++ Q A +A Sbjct: 179 GGVIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H+A+ C+G SR+D + ++++ LE N PGMT S+ P+ A AG SF +LL ++E Sbjct: 239 HKALFCKGYSRTDMILS--GKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIE 296 >gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] Length = 311 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 185/303 (61%), Gaps = 19/303 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++L + + +AL+ G+ +I +D +V + K D+A HG Sbjct: 3 VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL IPY SG+LASAL++DKM +K++ + +P +++ +++ Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIE 169 + L + P++IKP GS++G+ ++ +++ +LL+ ++ + + +++E Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEE----ELLKGIELAFQYDENIIVE 178 Query: 170 QYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +Y+ GIE+T G V L + EI +PK+ FY Y+ KY+ S H++PA++P ++Y++ Sbjct: 179 EYIKGIEITAGIYDVNKPICLPLIEI-IPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEK 237 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 Q L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F Sbjct: 238 AQGLGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFP 297 Query: 287 ELL 289 +L+ Sbjct: 298 DLI 300 >gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 306 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P I +NR MD Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + + P +KP + GSS+GI + + + L++ ++ H D++L+E + Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAALVE--AFRHDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-SSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] Length = 308 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 182/303 (60%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R + Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171 ++ Q ++ P ++KP GSS+G+ + +D L+S+ + + + +LIE++ Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNA-----IDDLKSAVEFALQYDETVLIEEW 184 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+G+ L +I VP+ +FY YE KY + N+ + P+ + + +E+++L Sbjct: 185 LSGDELTVPVLGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLV 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ Sbjct: 244 KQAYDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302 Query: 292 MVE 294 ++E Sbjct: 303 ILE 305 >gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] Length = 288 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/296 (40%), Positives = 167/296 (56%), Gaps = 16/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AV MGGISSEREVSL+SGKA +L G+ IDV + LV A + + D A+ Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKE-NLVSAFIDNEYDFAYLAF 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG VQ +L++L PYT SG AS ++MDK+ +K++ S GV V + Sbjct: 62 HGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKVITKKLAESAGVRVAKNY------D 115 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + S P VIKP GSS+GI + +++ G +++IE+ + G ELT Sbjct: 116 KVSDIDSYPVVIKPALEGSSVGIFFCHNREEAE----KAAGELVGKKIVIEEMITGDELT 171 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ + V I +PK++FY YE KY+ S H PAKI Y E A H + Sbjct: 172 VGVINGEGIGVLRI-IPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVL 230 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 231 GLAGISRSDFILK--DDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVE 284 >gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 308 Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 173/301 (57%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G +V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + S Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P+ V+KP GSS+G+ ++ +++ L + +H +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLV--NEAAELGPACRDAASHAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA++P + V + A AH+ Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIVAG-DGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] Length = 308 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 182/303 (60%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R + Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171 ++ Q ++ P ++KP GSS+G+ + +D L+S+ + + + +LIE++ Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNA-----IDDLKSAVEFALQYDETVLIEEW 184 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT ++G+ L +I VP+ +FY YE KY + N+ + P+ + + +E+++L Sbjct: 185 LSGDELTVPILGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLV 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ Sbjct: 244 KQAYDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302 Query: 292 MVE 294 ++E Sbjct: 303 ILE 305 >gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 318 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+S+ER+VSL +G+A + AL G+ V +IDV R + LA K D+A+ +HG Sbjct: 18 VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV + G+P Sbjct: 78 RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137 Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S P+ V+KP + GSS+G+ + K + + ++ + LL+EQ+V G E Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAVTDAAKY--AGTLLVEQFVKGRE 195 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235 + GV+ D +L V E+ + +FY Y+ KY + T L PA +P D Y V + AH Sbjct: 196 VQGGVLDDEALGVIEVRAAR-EFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAH 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GC G SRSD + VF LE N PGMT S+ P++AA G F L ++ Sbjct: 255 QALGCSGGSRSDVIVTD-GGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLG 313 Query: 296 ASCLR 300 A CL+ Sbjct: 314 A-CLK 317 >gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] Length = 320 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 173/300 (57%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ VLA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ T+ Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139 Query: 119 DSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 H+++ P V+KP GSS+GI + D LD + + + QLL+EQ V G Sbjct: 140 ---HVLAAELGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVVG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++GD +L I VPK +Y Y KY + ++ ++ P D E++R+A A Sbjct: 195 DELTVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPGLDGAD-EDEIRRIALAA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A GCRG R D + D S + F LE+N PGMT S+ P+ AA AG F EL+ ++E Sbjct: 253 FRAAGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLE 312 >gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K] Length = 308 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 171/301 (56%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + S Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P+ V+KP GSS+G+ ++ +++ L + +H +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLV--NEAAELGPACRDAASHAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA++P + V A AH+ Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIVAG-DGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+EREVSL +G+A AL G++V +IDV ++ + D+AF LHG Sbjct: 5 IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++ +P L+ R + ++ Sbjct: 65 KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124 Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V+K GS++GI + ++ +P D L+ ++ + LIEQ Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLP-DALE-EAFRYDPIALIEQ 182 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G E+T V+G+ +L + EI V + Y Y+ KY+ S H++P ++ ++ K V Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEI-VSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNV 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q LA + +GC G++R DF+ D S + LEIN PGMT S+ P+ A AG SF + Sbjct: 242 QELAVKVFKTMGCSGLARVDFIVDANSNP-YILEINTIPGMTETSLAPDAARAAGISFTD 300 Query: 288 LLLWMVEDA 296 L M++ A Sbjct: 301 LTDRMIKFA 309 >gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] Length = 288 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 177/297 (59%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + ++++ + DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK+ +K++ S GV + + FT Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKT-----FTTV 117 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + P ++KP K GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 118 AE-ISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGY-----AMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDA 286 >gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 288 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 172/297 (57%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + + + DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK+ +K++ S GV + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTY------SN 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P ++KP K GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGY-----AMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDA 286 >gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] Length = 330 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 174/308 (56%), Gaps = 20/308 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV---DRSVGLVLAHLKPDLAFN 56 +AVL GG S ER++SL SG AC AL +AGF +V +D+ D + L+ D+AF Sbjct: 11 VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRF--DVAFV 68 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 LHG +GEDG +Q +LE+L IPYT SG+LASA+ +K +K + G+PV + + Sbjct: 69 ALHGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEG 128 Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 R T D + P +KP GSS G+ + + + + +++S GD++L+E Sbjct: 129 TRLTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAAS--EGDRVLVE 186 Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 V+G E+T V+G+ +L + EIA S+FY ++KY HV+PA++ Y+ Sbjct: 187 TCVEGTEITVPVIGNDDPVALPIVEIAF-DSEFYDAKVKYEPAALHHVIPARLDQTTYER 245 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 LA AH+A+GCRG+SRSDF+ V LE N PGMT S+ P+ A +AG F Sbjct: 246 ASELAVRAHRALGCRGVSRSDFIVTAEGAPVI-LETNTIPGMTETSLLPDSARHAGIGFP 304 Query: 287 ELLLWMVE 294 +L VE Sbjct: 305 DLCRRFVE 312 >gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] Length = 315 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 177/301 (58%), Gaps = 17/301 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV+ S +V A D+AFNV+HG Sbjct: 17 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPAGT--DVAFNVIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ +KQ VP ++ D Sbjct: 75 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILR----DG 130 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P PYV+K K GSS+G+ +++++ + D ++ +W++G +LL+E +++G ELT Sbjct: 131 ANPTLPLPYVVKAPKEGSSVGVFIVREEAKV-ADTMR-EAWSYGKELLVEDFINGRELTV 188 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLN------STHVLPAKIPLDIYKEVQRLAFL 233 GV+GD +L + EI P DFY+++ KY LN + H PA I ++ + VQ +A Sbjct: 189 GVLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALA 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +AI R D L + LEIN PGMT VS+ PE AA AG S+ EL ++ Sbjct: 248 AARAIHLETYCRVDVLLTGAGEP-YVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVI 306 Query: 294 E 294 E Sbjct: 307 E 307 >gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 311 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 180/303 (59%), Gaps = 19/303 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++ + + +AL+ G+ +I +D +V + ++A HG Sbjct: 3 IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL IPY SG+LASAL++DK +K++ + +P I +++ +++ Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIE 169 + L + P++IKP GS++G+ + ++ +LL+ ++ + + ++IE Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEE----ELLKGIELAFKYDENIIIE 178 Query: 170 QYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +Y+ G E+T G+ L + EI +PK+ FY YE KY+ S H++PA++P ++Y++ Sbjct: 179 EYIKGKEITAGIYDINNPVCLPLIEI-IPKTGFYDYETKYTPGLSDHIIPARLPKEVYEK 237 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 Q L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F Sbjct: 238 AQGLGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFP 297 Query: 287 ELL 289 EL+ Sbjct: 298 ELI 300 >gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 17/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+DAG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 HL P ++KP + GSS+G+ + +P L ++ H D +L+E+ Sbjct: 125 TAANALLAKFTHL-GLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++GD L I P FY YE KY S ++ + P+ +P + + + L Sbjct: 182 WLSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A++A+GC G R DF+ D S F+ LE+N PGMT S+ P A G +F +L+ Sbjct: 241 AMAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLV 298 Query: 290 LWMVEDA 296 + ++E A Sbjct: 299 VKILERA 305 >gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 183/307 (59%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+A AL + G+ V +IDV + + + +LAF LHG Sbjct: 5 VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++ G+P ++ R + + Sbjct: 65 KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124 Query: 121 ---QH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 H L+ P V+K GS++GI + + + + + +S ++ +L+E+ Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQ--DVLVEK 182 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G+E+T V+G+ +L + EI + Y Y+ KY+ S H++P ++P + ++ Sbjct: 183 FISGMEVTASVLGNQDPVALPLIEI-TSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKI 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LA A Q +GCRG+ R DF+ +V+ LE+N PGMT S+FP+ A YAG F + Sbjct: 242 KQLAVKAFQVLGCRGLGRVDFMVQ--GSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQ 299 Query: 288 LLLWMVE 294 L+ +V+ Sbjct: 300 LVDKLVK 306 >gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428] Length = 308 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 17/301 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV+ S +V A D+AFNV+HG Sbjct: 10 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPAGT--DVAFNVIHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ KQ VP ++ D Sbjct: 68 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILR----DG 123 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P PYV+K K GSS+G+ +++++ + + + +W++G +LL+E +++G ELT Sbjct: 124 ANPTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMRE--AWSYGKELLVEDFINGRELTV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLN------STHVLPAKIPLDIYKEVQRLAFL 233 GV+GD +L + EI P DFY+++ KY LN + H PA I ++ + VQ +A Sbjct: 182 GVLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALA 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +AI R D L + LEIN PGMT VS+ PE AA AG S+ EL ++ Sbjct: 241 AARAIHLETYCRVDVLLTGAGEP-YVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVI 299 Query: 294 E 294 E Sbjct: 300 E 300 >gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 306 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 17/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 HL P ++KP + GSS+G+ + +P L ++ H D +LIE+ Sbjct: 125 TAANALLAKFTHL-GLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++GD L I P FY YE KY S ++ + P+ +P D + + L Sbjct: 182 WLSGPEYTVAILGDDVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A++A+GC G R DF+ D S F+ LE+N PGMT S+ P A G +F +L+ Sbjct: 241 AMAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLV 298 Query: 290 LWMVE 294 + ++E Sbjct: 299 VKILE 303 >gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 334 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 169/320 (52%), Gaps = 27/320 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ERE+SL SG A A AL+DAG V IDV L H + D+AF LHG Sbjct: 6 IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG VQ +LE+ IPYT SG+ AS ++MDK+ SK+ G+ L+ + Sbjct: 66 YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125 Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + I P VIKP GGSS+G+ +IK+ + + + GD+ +E+YV G Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHV--GEALKCGDEAFVERYVSGR 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS------------LNSTHVLPAK----- 218 E T G++ SL + EI V DF+ Y KY+S N T++L Sbjct: 184 EFTIGILDSRSLPIIEICVA-DDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVG 242 Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + +Y + Q LA AH AIGCRG SR D L D + LE+N PG T S+ P Sbjct: 243 FLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDN-KNDFYILEVNTIPGFTEKSLLPMA 301 Query: 278 AAYAGYSFRELLLWMVEDAS 297 A A SF L +V+ AS Sbjct: 302 ARAADISFTSLCEKIVDLAS 321 >gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] Length = 305 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 179/301 (59%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS+EREVSLSSGK +AL+ G +V ID L +L+ DL + LHG Sbjct: 3 IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L++L I Y SG+ SAL+MDK +SK G + ++ + + D Sbjct: 63 RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P V+KP + GS++GI + ++ + L+ ++ ++ + +L+E+++ G E+ Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEEL-LNGIE-EAFKLDETVLLEEFIKGREV 180 Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T VMG+ +L V EI VPK+ +Y YE KY++ S H++PA++ + VQ+ A L Sbjct: 181 TVAVMGNKGREKALPVVEI-VPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVL 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AHQA+GC SR DF+ LE+N PGMTP S++P+ A G S+ E++ V Sbjct: 240 AHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFV 299 Query: 294 E 294 + Sbjct: 300 Q 300 >gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] Length = 288 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 117/296 (39%), Positives = 166/296 (56%), Gaps = 16/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AV MGGISSEREVSL+SGKA +L G+ IDV + LV A ++ D A+ Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKE-NLVSAFIENEYDFAYLAF 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG VQ +L++L PYT SG AS ++MDK+ +K++ S GV + + Sbjct: 62 HGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITKKLAESVGVRIAKNY------D 115 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + S P VIKP GSS+ I + ++ + G +++IE+ + G ELT Sbjct: 116 KVADIDSYPVVIKPALEGSSVEIFFCYNREEAE----KAVAELKGKKIVIEEMITGEELT 171 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ + V I +PK++FY YE KY+ S H PAKI Y E A H + Sbjct: 172 VGVINGEGIGVLRI-IPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVL 230 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 231 GLAGISRSDFILK--DDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVE 284 >gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] Length = 307 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 176/301 (58%), Gaps = 12/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG +SEREVSL+SG A AL G+ +D L + FN+LHG Sbjct: 9 IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V + T Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ Q +++ P ++KP + GSS+G+ K D + L + D +LIE+++ G Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGL--TKVDSADKLKSAVDLALKFDDIVLIEEWLSG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+GD L +I VP+ +FY Y KY S N+ ++ P + + + E++ L A Sbjct: 187 DELTVPVLGDEVLPAVQI-VPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A+GCRG SR D + D S F L E+N PGMT S+FP+ AA GYSF +L+ ++ Sbjct: 246 YEAVGCRGWSRIDVMTD--SEGNFRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKIL 303 Query: 294 E 294 E Sbjct: 304 E 304 >gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] Length = 318 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 177/303 (58%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL +AGF ID L D FN+LHG Sbjct: 19 IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE + IPYT G++ASAL+MDKMR+K + + G+PV +V + + Sbjct: 79 RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P ++KP GSS+G+ +K +D +D + + +LIE+++ Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAVDF----ALKFDETVLIEEWL 194 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ +L Sbjct: 195 AGDELTIPVLDNEVLPAVRI-VPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVK 253 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D S+ F L E+N PGMT S+FP+ AA GYSF +L++ Sbjct: 254 RAYDVVGCRGWSRIDVMTD--SKGQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVR 311 Query: 292 MVE 294 ++E Sbjct: 312 ILE 314 >gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] Length = 303 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 172/301 (57%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 +A+L GG SSERE+S+ SGKA +AL+ GF+ S D + + PDLAF L Sbjct: 6 IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +LE L I YT S + SA+ MDK +K ++ + G+ V + Sbjct: 66 HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHGDQLLIEQYVDGI 175 + + P V+KP GSS+G+ +++ + + ++L+ S +++IE+++ G Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDS-----KVIIERFIKGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+T G++ LD+ EI V K FY Y KY S + ++ PA+I +Y+++Q A + Sbjct: 181 EITVGILNGEPLDIIEIKV-KEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC+G++R DF+ D K ++LE+N PG+T S+ P+ AA G +F L+L ++E Sbjct: 240 NILGCKGVARVDFILD--KDKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEG 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda] gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda] Length = 324 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 171/300 (57%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 + +L GG+S+EREVSL S +AL G++V++IDV + + + L+ + +P FN L Sbjct: 27 VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N Sbjct: 87 GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I PYVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203 Query: 180 GVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + + EI + K FY Y+ KYS + H++P +P++ +V +A ++ Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG R + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323 >gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163] Length = 306 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 176/307 (57%), Gaps = 21/307 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL SG+A + L++AG +D + + LK D F Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVD---TRDFPVTKLKEDGFTRVFIA 61 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116 LHG GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 62 LHGRGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRH 121 Query: 117 --TMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + L++ P ++KP + GSS+G+ + +P L ++ H D +L+ Sbjct: 122 YSETAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLV 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T ++GD L I P FY YE KY S ++ + P+ +P D + + Sbjct: 180 EKWLSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALA 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA A++A+ C G R DF+ D S F+ LE+N PGMT S+ P A G +F + Sbjct: 239 VLAMAAYRAVDCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQ 296 Query: 288 LLLWMVE 294 L++ ++E Sbjct: 297 LVVKILE 303 >gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] Length = 312 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 179/308 (58%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--FNVL 58 + V+MGG SSE EVS +G A SALE G+ V +++D A K D A FN L Sbjct: 6 IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELD-PPHFAEAIRKSDCAIVFNAL 64 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG++Q L++L IPYT SG+LA+A++MDK+ SK+V G+ S +RF Sbjct: 65 HGRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEF 124 Query: 119 DSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D++ S P VIK GSS+G+ +++K++ L+ ++ + +++L+E+++ Sbjct: 125 DAELPSRIRKAFSLPVVIKASSQGSSIGVAIVEKEEE--LEAALKDAFRYDEEVLVEEFI 182 Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ELT V GDA + V EI S Y Y KY+ STH++PA+IPLD+ + VQ Sbjct: 183 RGKELTVAVWGDAREAQAFPVIEITT-VSGRYDYASKYTKGASTHIIPARIPLDVTERVQ 241 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +LA A +A GCRG++R+D + + +EIN PGMT S+ P+ G F EL Sbjct: 242 QLAVDAFRACGCRGVARADMMLGE-DMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPEL 300 Query: 289 LLWMVEDA 296 ++E A Sbjct: 301 CERILEMA 308 >gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 306 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M + L++ P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ + + +E+ LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++A+GC G R DF+ D S F+ LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 306 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG ID+ + L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD Sbjct: 65 RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + +Q+ L ++ D++L+E + Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRV--NQASELQAALQEAFRFDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVIGTDILPSIRIQT-ASEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D11S-1] Length = 309 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171 ++ + ++ P ++KP GSS+G+ +K +D L+S+ + + +LIE++ Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVK-----AVDELESAVDFALKFDNTVLIEEW 184 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + + +E++RL Sbjct: 185 LAGDEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLV 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ Sbjct: 244 KQAYDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEK 302 Query: 292 MVE 294 ++E Sbjct: 303 ILE 305 >gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] Length = 317 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 173/305 (56%), Gaps = 14/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S ERE+SL SG ACA AL + GF V ID L L D+AF LH Sbjct: 12 VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG VQ LE + +PYT SGILASAL+++K R+K+ G+ V PS+ V R Sbjct: 72 GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131 Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 F + + P V+KP GSSLG+ +++ + + + S + + +IE ++ Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALSVDV--EAMIEGFI 189 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G ELT GVMG+ +L V +I + +FY++ KY+ S H+ PA + ++ + VQ Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH +GCRGISR+D + D +R + LE N PGMT S+ P+ A AG F + Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAENR-CWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308 Query: 290 LWMVE 294 ++E Sbjct: 309 ERLIE 313 >gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] Length = 288 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 14/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL SG A +L+ G+ +DV ++++ + DLA+ H Sbjct: 3 IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GE+G Q +L++L PYT SG + SA++MDK +K V +S G+ + Sbjct: 63 GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTYNC------ 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P V+KP + GSS+GI + + ++ G + LIE+ + G ELT Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVR----EALRALEGRKPLIEEMIQGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ L V I +PK+ FY YE KY++ S H PAKI Y + A H IG Sbjct: 173 GVLNGEGLGVLRI-IPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GISRSDF+ +V++LE+N PGMT S+ P++ GY+F +L+ MV+ Sbjct: 232 LKGISRSDFMLK--DGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVD 284 >gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 309 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 179/306 (58%), Gaps = 17/306 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S EREVSL SGKA L+DAG++V +D + PD+ F LHG Sbjct: 6 VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ LELL IPYT SG+LASA+ M+K+ +K+++S G+P ++ + + + Sbjct: 66 GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFN-RD 124 Query: 123 LISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 L +P P V+KP GSS+G +++K ++I L + S + +++L+E+++ Sbjct: 125 LFNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPALELALSLD--EEILVEKFIA 182 Query: 174 GIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V+G +L V EI VPK+++Y YE KY S H++PA+I + + V+ + Sbjct: 183 GTELTVTVLGKDNLKTLPVIEI-VPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEI 241 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ A+GCRG R D + D + LEIN PGMT S+ P+ A AG F ELL Sbjct: 242 SCKAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLD 300 Query: 291 WMVEDA 296 V+ A Sbjct: 301 LFVKMA 306 >gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] Length = 284 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 171/296 (57%), Gaps = 16/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG+SSERE+SL +GKA +L G+ +D+ L + DLA+ LH Sbjct: 3 IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QA+L++++ PYT SG+ SA++MDK +K + G+ + S D Sbjct: 63 GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKIIAEKAGIRIPKSY------RD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIELT 178 +IS P V+KP GSS+G+ + ++ ++ + N G LLIE++V G ELT Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNS-----IEEVEKAEKNLMGKSLLIEEFVSGEELT 171 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ L V +I+ PKS Y ++ KY+ + + PAK+ +Y+E + HQ + Sbjct: 172 VGVLNGEPLGVLKIS-PKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQEL 230 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G G+SRSDF+ K+++LE+N PGMT S+ P++A GY+F +L+ +++ Sbjct: 231 GLSGVSRSDFILK--DDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284 >gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] Length = 319 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AV+ GG S E E+++ SGK CA+AL++AGF V +DV ++ + LA D+ + + Sbjct: 11 VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+P I V T+ Sbjct: 71 HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS G+ + + +P L + G+++LIE+ Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAAL--KLAGEQGERILIEEC 188 Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+T V+G+ +L + EI V +FYS + KY + HV+PA++ +Y Q Sbjct: 189 VVGTEITVPVIGNDNPTALPIVEI-VTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH A+GCRG+SRSDF+ V LE N PGMT S+ P+ A G F EL Sbjct: 248 ELAIKAHNALGCRGVSRSDFIVTEDGEPVV-LETNTIPGMTARSLLPDSARTGGIDFPEL 306 Query: 289 LLWMVEDA 296 +E A Sbjct: 307 CTRFIEFA 314 >gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] Length = 317 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A A LEDAGF V ID L K D F LHG Sbjct: 17 IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L+IPYT S +L S+LSMDK+RSKQ+ +CG+P P +VN+ + Sbjct: 77 RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L + ++KP GSS+G+ K + L+++ ++ Q+L+E ++DG Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNALIEAFGFDT--QVLLEAWIDG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD +L + P+ +FY YE KY S ++ + P + E++ L+ A Sbjct: 195 PEYTVTILGDKALPAIHMETPR-EFYDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A G +G R D + + W LE+N PGMT S+ P+ A G +F EL+ + Sbjct: 254 FNATGAQGWGRVDIMRNKTGE---WQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQI 310 Query: 293 VE 294 ++ Sbjct: 311 LQ 312 >gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] Length = 306 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 306 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVS +SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FAELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 320 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 31/314 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++SL SG A + L +AG ID + L AF LHG Sbjct: 5 VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK + G+PV P + +NR Sbjct: 65 RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124 Query: 116 -FTMD-----------SQHLISP------PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQ 156 T + S LI P ++KP + GSS G+ ++ DQ LD Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQ---LDDAL 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVL 215 +W++ +++L+E++ G ELT ++GD L I V SD FY Y+ KY S + + Sbjct: 182 KKAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQV--SDIFYDYQAKYVSDKTQYFC 239 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P+ + + K++ L+ A++A+GC G R D + D + +EIN PGMT S+FP Sbjct: 240 PSGLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDEGH-FYLMEINTAPGMTDHSLFP 298 Query: 276 EMAAYAGYSFRELL 289 A AG+SF EL+ Sbjct: 299 MAARQAGFSFSELV 312 >gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 311 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 178/305 (58%), Gaps = 17/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S+EREVSL SG+ +AL+ + V + D + + A K D+A +LH Sbjct: 8 VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q +LE L IPY SG+L SA++M+K+ SKQ+ G+PV P ++ +R Sbjct: 68 GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127 Query: 118 -MDS-QHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D+ + P V+KP GSS+G+ IV +DQ L + W + + LIE+YV G Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQ---LAAAVETGWQYDRRCLIEKYVHG 184 Query: 175 IELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 IE+T GV+G+ +L + EI +P +F+ Y+ KY+ S + PA++ I + Q Sbjct: 185 IEITGGVLGNDHLQALPLIEI-IPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQE 243 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AHQA+ C+G SR+D + +F LE N PGMT S+FP+ AA AG SF LL Sbjct: 244 YARKAHQALCCKGYSRTDMIVS--GNDIFILETNTIPGMTATSLFPQAAAVAGISFSALL 301 Query: 290 LWMVE 294 ++E Sbjct: 302 DRLIE 306 >gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617] Length = 306 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 169/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + + P +KP + GSS+GI + +Q+ L ++ +++L+E + Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRV--NQASELQAALEEAFRFDNEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-TSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] Length = 306 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GGIS+EREVSL+SG A AL + G+ ID +A+LK D FN+ Sbjct: 8 IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKE---YNVANLKKDGFHRVFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +DG ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L Sbjct: 183 LDGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70] Length = 309 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL AGF ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V + + Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P ++KP GSS+G+ +K+ D +D + + D +LIE+++ Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAVDF----ALKYDDTVLIEEWL 185 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T V+ + L I VP+ +FY YE KY S N+ + P+ + + E+++L Sbjct: 186 SGAEFTVPVLDNEVLPSIRI-VPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVK 244 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D F L E+N PGMT S+FP+ AA GYSF +L++ Sbjct: 245 QAYDVVGCRGWSRIDVMLD--GNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302 Query: 292 MVE 294 ++E Sbjct: 303 ILE 305 >gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810] Length = 306 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] Length = 330 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVS +SGKA AL G+ ID +A+LK D AFN+ Sbjct: 32 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 88 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 89 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 148 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 149 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 206 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 207 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 265 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 266 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 323 Query: 291 WMVE 294 ++E Sbjct: 324 KILE 327 >gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866] Length = 306 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVS +SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20] gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20] gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] Length = 306 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] Length = 309 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + +PYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 70 RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171 ++ + ++ P ++KP GSS+G+ +K +D L+S+ + + +LIE++ Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKS-----VDELESAVDFALKFDNTVLIEEW 184 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + + +E+ RL Sbjct: 185 LAGDEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLV 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ Sbjct: 244 KQAYDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEK 302 Query: 292 MVE 294 ++E Sbjct: 303 ILE 305 >gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] Length = 326 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 167/306 (54%), Gaps = 16/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S ER++S+ SG C AL++AGF+ V DV D S LA + D+ F + Sbjct: 11 VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113 HG FGEDG +Q +LE L IPYT SG+LASALSM K +K V S +P I V Sbjct: 71 HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130 Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + H ++ PYV+KP GSS G+ ++ ++ + + N G +L+E+ Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAIASARGKNSG--VLVEER 188 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T V+G +L V EI ++ Y + K HV+PA + Y Q Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKY-EAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+A+GC G+SRSDF+ D + LE N PGMT S+ P+ A + G SF EL Sbjct: 248 ELAVRAHRALGCTGVSRSDFIVDATGEP-YILETNNIPGMTEHSLIPDAARHDGMSFSEL 306 Query: 289 LLWMVE 294 +++E Sbjct: 307 CTYLIE 312 >gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] Length = 306 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + +++ +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846] Length = 306 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVS +SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDALGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas maltophilia K279a] Length = 320 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 169/297 (56%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D + LA D FN+LHG Sbjct: 20 VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ + Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GSS+GI + D LD + + + QLL+EQ V G EL Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVVGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I VPK +Y Y KY + ++ ++ P D +E++R+A A +A Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPGLDGGD-EEEIRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GCRG R D + D S + F LE+N PGMT S+ P+ A AG SF EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLE 312 >gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] Length = 306 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 166/307 (54%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR Sbjct: 65 RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +HL P ++KP GSS+G+ + +P + ++ D LLIE+ Sbjct: 125 IKKEQLAQQVKHL-GLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T V+GD L I P FY YE KY S + + P+ + D+ ++ + Sbjct: 182 WLSGPEYTVAVLGDEVLPSIRIQ-PPGIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADM 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 241 AMKAYQAVGCRGWGRVDVMQDS-DGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVV 299 Query: 291 WMVEDAS 297 ++E AS Sbjct: 300 RILELAS 306 >gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG] gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG] Length = 306 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVS +SG+A AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum] Length = 323 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 172/302 (56%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S E E+S SGKA A AL AGF+V + + DRS+ L PD+AF HG Sbjct: 14 VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118 GE+G +Q LE ++IPYT SG+LASA+ M KMRS+ + G+ V P +R + Sbjct: 74 GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAV-PLTYAHRTEESF 132 Query: 119 DSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ PPY++KP GSS+G+ + + + + + ++ ++H +L+EQ + G E+ Sbjct: 133 NPGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSH--WVLVEQLIPGREI 190 Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ L EI K++ FY+Y KY S H+ PA + D E+ R+ A + Sbjct: 191 QSAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACR 250 Query: 237 AIGCRGISRSDFLFDPLSRKVF-WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + RG R D + + VF LEIN PG+TP S+ PE+A++ G SF +L++ ++ Sbjct: 251 VLDVRGACRLDTILN--DEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIAT 308 Query: 296 AS 297 AS Sbjct: 309 AS 310 >gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 333 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 172/293 (58%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+SSE+ +SL++G A ++LED G+ V +I VDR V + L D+AF LHG Sbjct: 6 IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++ +P ++NR Sbjct: 66 RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KPL GSS+G+ + + + ++ ++H +++E++V+G+E Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAACERAFVFDH--SVVVERFVEGME 183 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ V+ D +L E+A + + Y KY+S + +++P ++ + Y+ V A AH Sbjct: 184 VSVAVLEDRALGAVEVA-SEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ C G SR D + P + + LE+N P + P S+ P++A AG F +L+ Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLV 294 >gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto Rico] Length = 333 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 174/298 (58%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ +L + Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I +S LDL + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLDL-SAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] Length = 306 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R D Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124 Query: 120 -----SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S I+ P +KP GSS+GI + ++P L ++ H D +L+E + Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAAL--DMAFKHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L EI S+FY YE KY S ++ +V PA + + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D R LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGRFQL-LEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21] Length = 297 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLH 59 +L+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+LH Sbjct: 1 MLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNILH 57 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 58 GRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFS 117 Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D Q +++ P ++KP GSS+G+ +K + + + + +++ +LIE+++ Sbjct: 118 ELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEWLA 175 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 176 GDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKR 234 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ + Sbjct: 235 AYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKI 292 Query: 293 VE 294 +E Sbjct: 293 LE 294 >gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] Length = 324 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 177/309 (57%), Gaps = 22/309 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGL-VLAHLKPDLAFNVLHG 60 VL GG S E E+SL SG+ AL+ AGF KV +D+ + L D+AF +HG Sbjct: 13 VLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAMHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 ++GEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+PV I V+ +FT Sbjct: 73 HYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTKFT 132 Query: 118 MDS-QHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLLQS--SSWNHGDQLLIEQ 170 + + +++ P +KP GSS G+ V KDQ LLQ+ + GD++LIE+ Sbjct: 133 DEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQ-----LLQAIEDAGAQGDRVLIEE 187 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G E+T V+G+ +L + EI V + +FYS E+K + H+ PA++ D+Y Sbjct: 188 CVVGTEITVPVIGNDHPTALPIVEI-VFEDEFYSIEVKAEPASLHHITPARLAPDVYARA 246 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q LA AH+A+GCRG+SRSDF+ V LE N+ PGMT S+ P+ A G F E Sbjct: 247 QELAICAHKALGCRGVSRSDFIVKADGTPVI-LETNMIPGMTERSLIPDSARTDGIPFSE 305 Query: 288 LLLWMVEDA 296 L +E A Sbjct: 306 LCTRFIEYA 314 >gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] Length = 291 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 168/294 (57%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL +G+A AL++ G+ IDVD +V + +PD F LHG Sbjct: 5 IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPY +G+ ASA++ DK +K +V S G+ P + D Sbjct: 65 KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKT-PDYYLCENDKDI 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + L P V+KP + GS++GI ++K ++ ++ ++LIE++++G ELT G Sbjct: 124 RFL---PAVVKPAREGSTIGISIVKSKDEFSKAFSEAKKYDS--RVLIERFIEGKELTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + L I P FY YE KY+ + ++ + +D ++ ++ IGC Sbjct: 179 IINNEVLPTIYIK-PIKGFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R D+++D ++ F LE+N PGMT S+ P+ A AGY F +L+ +++ Sbjct: 238 SSLCRIDYIYD--GKEFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289 >gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] Length = 297 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 180/302 (59%), Gaps = 18/302 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLH 59 +L+GG S+EREVS +SGKA AL G+ ID +A+LK D AFN+LH Sbjct: 1 MLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNILH 57 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 58 GRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFA 117 Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D Q +++ P ++KP GSS+G+ +K + + + + ++ + +LIE+++ Sbjct: 118 ELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEWLA 175 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L Sbjct: 176 GDELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKR 234 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ + Sbjct: 235 AYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKI 292 Query: 293 VE 294 +E Sbjct: 293 LE 294 >gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Virginia] Length = 333 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 174/298 (58%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ +L + Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I +S LDL + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLDL-SAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] Length = 316 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 18/300 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 + VLMGG S+EREVSL++GKA AL + G+ ID+D L L+ + FN Sbjct: 6 IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPP--RFLEQLRENGVTFVFNA 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 +HG FGEDG +Q L+LL IPYT SG+LASAL+MDK SK++ + G+P P + Sbjct: 64 IHGKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIP-TPRAEIYTKA 122 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++L++ P V+K GSS+G+++++++ + +++ ++ + D +++E Sbjct: 123 DAKRNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVE--AFRYSDCIVVEN 180 Query: 171 YVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++ G ELT ++G L+V I VP S Y Y KY+ + +++PA+I + + V+ Sbjct: 181 FIKGKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVR 240 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A +GCRG++R D + D + LE+N PGMT S+ P+ AA AG SF +L Sbjct: 241 QVAVAAFNLLGCRGVARVDIMLDD-DNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADL 299 >gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 303 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 181/302 (59%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 + VL GG SSEREVSL SG SA++ G V Q+D S+ L + +L K D F LH Sbjct: 3 VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLD-PCSIDLSMLNLYKLDKVFIALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE G +QA+L++L+IPY SG+LASA+S++K+++K+V S+ G+ P +LV + T Sbjct: 62 GGLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQ 121 Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S L I+ P VIKPL G S+G+ ++ + LL +++ + D++L+EQ++ G Sbjct: 122 SDILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQALL--AAFEYDDEVLVEQFIVG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E TC V+ D +L V +I F+ + K+ + ++T+ P+ + K +Q++ A Sbjct: 180 REYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAA 237 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GCRG R D L + V+ +E+N PGMT S++P AA AG ++ L+ +++ Sbjct: 238 YKALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLD 296 Query: 295 DA 296 A Sbjct: 297 KA 298 >gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 312 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 25/305 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVSL SG+A AL AG+ V +IDV + L + +AF LH Sbjct: 5 IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++ G+P ++ + ++ Sbjct: 65 GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124 Query: 120 SQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + L + P V+K GS++GI + + + + S+ + +L+E Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKMAEAI--ESALKYDQDVLVE 182 Query: 170 QYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 Q+V G E+T V+G+ S +++T + + Y Y+ KY+ S H++P ++P DI Sbjct: 183 QFVAGTEVTASVLGNNSPEALPLIEITSV----TGVYDYQSKYTPGMSDHIIPPRLPQDI 238 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++++ LA + ++GCRG+ R DF+ + + LE+N PGMT S+FP+ A YAG Sbjct: 239 QEKIKELAIKSFLSLGCRGLGRIDFIIR--DNQPYALEVNTLPGMTATSLFPDAANYAGI 296 Query: 284 SFREL 288 SF EL Sbjct: 297 SFPEL 301 >gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3] gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 320 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/300 (40%), Positives = 170/300 (56%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ LA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P P + T Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLP-TPQY--RKVTA 136 Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + H + P V+KP GSS+GI + D LD + + + QLL+EQ V G Sbjct: 137 EDVHANAAALGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVIG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++GD +L I VPK +Y Y KY + ++ ++ P + D E++R+A A Sbjct: 195 DELTVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LDGDAEDEIRRIALAA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A GCRG R D + D S + F LE+N PGMT S+ P+ A AG F EL+ ++E Sbjct: 253 FRAAGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLE 312 >gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] Length = 307 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+ AG +D L F LHG Sbjct: 6 VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + ++R Sbjct: 66 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 TMD+ I+ P ++KP + GSS+G+ K ++ D + H D++LIE+ Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGM--SKVNEPCEFDPALVEALRHDDEILIEKC 183 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I +FY YE KY S + + P+ + + + + L Sbjct: 184 LVGPEYTVAFIGDEILPSIRIKA-AGEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D S + LE+N PGMT S+ P A AG SF +L++ Sbjct: 243 KRAYQALGCSGWGRVDVMQDE-SGRFCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301 Query: 292 MVE 294 ++E Sbjct: 302 ILE 304 >gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] Length = 287 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 31/303 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + V A L+ D LA+ VL Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDEN-NQVTAFLENDYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114 HG GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ S G+ V S + Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAESIGIRVPKSYRDLDSIE 121 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 RF P +IKP+ GSS G+ + K++ L L+ +IE Y+ Sbjct: 122 RF----------PVIIKPVDEGSSKGLFLCNNKEEAGEALKKLRKP--------IIEDYI 163 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 164 VGEELTVGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIA 222 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 H+ +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ Sbjct: 223 ERIHKEFKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRL 280 Query: 292 MVE 294 VE Sbjct: 281 TVE 283 >gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] Length = 320 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 167/300 (55%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL SG A +AL+ G + D L L +AFNVLHG Sbjct: 22 VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 +GEDG VQA+L+ + IPYT G+ ASAL MDK R K + + G+PV P V D Sbjct: 82 TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPV-PDFAVLHDDTDF 140 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+G++ +K+ +P + + +++ E++VDG E Sbjct: 141 AAVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEY 200 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+G +L I +P ++FY Y+ KY ++ + P+ + E++RLA +A Sbjct: 201 TCAVLGQQALPSIRI-IPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEA 259 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 IG RG R DFL S K++ LEIN PGMT S+ P+ AA G F +L + ++ A+ Sbjct: 260 IGGRGWGRVDFLRSQ-SGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318 >gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 313 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GG S ERE+SL+SG+ A AL+ AGF+V +D + L +P D+AF LH Sbjct: 10 VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TM 118 G GEDG +Q LE + +PY GI +SA +MDK+++K G+P SI ++R ++ Sbjct: 70 GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129 Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ +I+ V+KP GS+LG+ +I+ + LD + ++ + +LIE ++ G Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSA--LDRALTEAFKLDNAVLIETFMAGT 187 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G+ ++L V EI +FY +E KY++ S H+ PA++ + VQ++A Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+GC G+SRSD + + W LE N PGMT S+ P+ AG SF +L Sbjct: 248 QAHKALGCCGVSRSDVIL--AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTR 305 Query: 292 MVE 294 ++E Sbjct: 306 LIE 308 >gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 287 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 170/297 (57%), Gaps = 19/297 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + V A L D LA+ VL Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDET-NQVTAFLDNDYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ + G+ V S Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------A 115 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + + P +IKP+ GSS G+ + + + + +IE Y+ G ELT Sbjct: 116 DLESIERFPVIIKPVDEGSSKGLFLCNNKEE------AGEALKKVKKPIIEDYIVGEELT 169 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 170 VGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKE 228 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 229 FKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVE 283 >gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] Length = 323 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 + +L GG S+ER+VSL +GKAC ALED G + ID + + L L + D + Sbjct: 3 IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG+VQ +LE L +PY SG LASAL+MDK+ SKQ+ + G+P P LV Sbjct: 63 LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPT-PEWLVWD-- 119 Query: 118 MDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++Q L + P V+KP GS++GI + + + S+ L +SS + ++ +E Sbjct: 120 -EAQPLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASSVS--SRVFLE 176 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +Y+ G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 177 RYIPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEA 236 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A++ +GC G++R D D + LE+N PGMTP S+ PE AA G++F EL+ Sbjct: 237 AGLRAYRVLGCEGLARVDLRVD-ADENPWVLEVNTLPGMTPTSLCPEAAAALGWTFTELV 295 Query: 290 LWMVEDA 296 M++DA Sbjct: 296 ERMLQDA 302 >gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031] gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031] Length = 306 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 182/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SGKA AL G+ ID +A+LK D AFN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT ++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124 Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D Q +++ P ++KP GSS+G+ +K + + + + +++ +LIE++ Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+ + L I VP+ +FY Y+ KY S N+ + PA + + +E+ L Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ A+GCRG SR D + D ++ F L E+N PGMT S+FP+ AA G SF +L++ Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] Length = 291 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 166/293 (56%), Gaps = 5/293 (1%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA-FNVLHGNFGEDG 66 +S+EREVSL S +AL G++V++IDV + + + L+ + P FN L G +GEDG Sbjct: 1 MSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDG 60 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N I Sbjct: 61 CIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILR 120 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 PYVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL ++ Sbjct: 121 PYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKV 177 Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + EI + K FY Y+ KYS + H++P ++P++ ++ +A ++ CRG R Sbjct: 178 VGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCR 237 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 238 LECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 290 >gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] Length = 306 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 164/307 (53%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +HL P ++KP GSS+G+ + ++P + ++ D LLIE+ Sbjct: 125 IKKEQLAQQVKHL-GLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T V+GD L I P FY YE KY S + + P+ + E+ + Sbjct: 182 WLSGPEYTVAVLGDNVLPSIRIQ-PPGVFYDYEAKYLSDETQYFCPSGLDSQREAELADI 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+QA+GCRG R D + D K + LE+N PGMT S+ P A AG F +L+ Sbjct: 241 AMQAYQAVGCRGWGRVDVMQDS-DGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVA 299 Query: 291 WMVEDAS 297 ++E AS Sbjct: 300 RILELAS 306 >gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] Length = 316 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG AL AG D L H + AF LHG Sbjct: 7 VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ ++ G+P + Sbjct: 67 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126 Query: 121 QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +H+++ P ++KP + GSS+GI + + D ++ +S D +L E+++DG Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEM-QDAVKLASEYDAD-VLCEEFIDG 184 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+GD +L V I P + Y +E KY S + + P+ +P E+QRL Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAPGGN-YDFEHKYFSEETGYHCPSGLPPAEEAEIQRL 243 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++ +GCRG R+D + RK F LE+N PGMT S+ P A AG S+ +L + Sbjct: 244 TLAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCV 303 Query: 291 WMVEDAS 297 ++E A+ Sbjct: 304 HVLECAA 310 >gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 306 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 113/298 (37%), Positives = 167/298 (56%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR T Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124 Query: 118 MDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + S+ L + P ++KP GSS+G+ K DQ+ L ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGM--SKVDQANQLHSALVEAFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+QA+GC G R D + D R + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQDSDGR-FYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 298 >gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] Length = 319 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 174/306 (56%), Gaps = 17/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL GG S ERE+SL+SGK AL +AG+ ++ +D + L + D AF Sbjct: 11 IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVEL-IDPAAPTFLERMTGDGWDAAFIA 69 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L IPYT S LAS ++MDK SK + G+PV PS+ R Sbjct: 70 LHGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRAD 129 Query: 118 M----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 M + ++ +KP+ GSS G I + KD S + ++ ++ HG+++++E+ V Sbjct: 130 MLPLEEIVAVVGEQSFVKPVVNGSSYG-ISLAKDPSELANAIE-VAFEHGEKVMVEKRVF 187 Query: 174 GIELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E + +GD +L V EI VP +S+FY E+KY+ H +PA +P D+Y +VQ Sbjct: 188 GTECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH+A+G GISR+D + LE N PGMTP S+ P+ A +AG F EL Sbjct: 248 EIACRAHEALGLYGISRTDVIV--TEDGPVILETNNIPGMTPESLVPDEARHAGIPFSEL 305 Query: 289 LLWMVE 294 +V+ Sbjct: 306 CAELVD 311 >gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700] Length = 309 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V NR Sbjct: 70 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ ++ P ++KP GSS+G+ +K + L+ + +LIE+++ G Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEE--LESAVDFALKFDRTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ L +I VP+ +FY Y+ KY S N+ + PA + + +E++RL A Sbjct: 188 DEFTVPVLDGEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305 >gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] Length = 345 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 165/300 (55%), Gaps = 19/300 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAFN 56 + V+MGG S ER+VSL SG A A ALE G+ V +I + G L + D AF Sbjct: 10 VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++ VP P V Sbjct: 70 ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129 Query: 117 T----MDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168 +D+ H P ++KP GSSLG+ ++ L+ L+S+ ++ D ++ Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVT-----KAGSLEELKSALALAFEFDDAAIV 184 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E++V G E+ G++ L EI VPK Y YE KY+ + + +PA++P Y+ V Sbjct: 185 ERFVAGTEVNVGILDGKVLGAIEI-VPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVL 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A QA+GC G R D L + LE+N PGMT S+ P++A AGY F +L Sbjct: 244 NLAERAAQALGCTGAVRVDLLVTG-GENEYVLEVNTLPGMTQTSLLPKIAEAAGYEFGDL 302 >gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 287 Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 173/299 (57%), Gaps = 23/299 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + V A L+ D LA+ VL Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDEN-NQVTAFLENDYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ + G+ V S Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------R 115 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P +IKP+ GSS G+ + K++ L L+ +IE Y+ G E Sbjct: 116 DLDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLRKP--------IIEDYIVGEE 167 Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A H Sbjct: 168 LTVGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIH 226 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 227 KEFKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVE 283 >gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2] gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2] Length = 309 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 176/304 (57%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GGISSEREVSL+ G AL+ + + + D + ++ + D+A +LH Sbjct: 6 LALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L+LL+IPY +G+L SA++M+K+ SK++ G+P + +R Sbjct: 66 GPFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKV 125 Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H + P V+KP+ GSS+G+ ++K+++++ L + + +L+E YV G+ Sbjct: 126 DLHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAAL--EKGFEQDEAVLLEAYVKGL 183 Query: 176 ELTCGVMGDASLD---VTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELTC V+G+ ++ V EI +P +F+ Y+ KY + + + PA+I + K VQ Sbjct: 184 ELTCAVVGNQEIEAMPVIEI-LPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAH 242 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+A+ +G SR+D + R V LE N PGMT S+ P A AGYSF +LL Sbjct: 243 AIEAHKALFLKGYSRTDMILS--DRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLD 300 Query: 291 WMVE 294 ++E Sbjct: 301 RLIE 304 >gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 309 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A A+AL G +V ID++R V L + PD+ FN LHG Sbjct: 3 IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+ G+P P L + Sbjct: 63 KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIP-TPKFLAWTGAEYA 121 Query: 118 MDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P VIK GS++G +++++ L+ + + + + E Sbjct: 122 TGKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGE--LEPAIAGALKYDLSFMAEA 179 Query: 171 YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y+ G E+T V+G+ L + EI V + FY Y+ KY+ S H++P ++P D+ Sbjct: 180 YLAGPEITAAVLGNRKPQVLPLIEI-VSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAA 238 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA + +GCRG +R DF+ R+ +E+N PGMT S+ P+ A AG F + Sbjct: 239 TSLAGRTYALLGCRGFARVDFIVAG-GREPQVIEVNSVPGMTATSLVPDAARAAGLDFPD 297 Query: 288 LLLWMVE 294 L+ +V+ Sbjct: 298 LVQKIVD 304 >gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330] Length = 307 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 169/302 (55%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG SSERE+SL SG+A AL G D ++ LA LK D+AFN+ Sbjct: 7 VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTE---LAKLKKQGFDIAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NR 115 LHG +GEDG VQ LE L +PYT G+LASAL MDK R K + S+ G+P+ P +++ N Sbjct: 64 LHGTYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNS 123 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + + P IKP GSS+G++ +K+ + + + +L EQ++ G Sbjct: 124 HFAEVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGG 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TCGV +L I +P+++FY YE KY ++ ++ P+ + D +Q LA A Sbjct: 184 EYTCGVFNRQALPTIRI-IPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAF 242 Query: 236 QAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +AI G + R DFL D + ++ LE N PGMT S+ P+ A G F +L + ++ Sbjct: 243 EAIGGGNSLGRIDFLKDSVG-CLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILN 301 Query: 295 DA 296 +A Sbjct: 302 NA 303 >gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 306 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + + + L ++ ++H ++L+E + Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQT-ASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + R + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMMGGDGR-FYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] Length = 316 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 181/307 (58%), Gaps = 24/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG A +AL G+ ID +A+LK D FN+ Sbjct: 18 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKE---YNVANLKADGFDRVFNI 74 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V T Sbjct: 75 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIV---T 131 Query: 118 MDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ H ++P P ++KP GSS+G+ +K + + + + ++ + +LI Sbjct: 132 KENAHELNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKFD--NTILI 189 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G ELT V+G L I VP+ +FY Y+ KY S N+ + PA + + +E+ Sbjct: 190 EEWLAGDELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELA 248 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRE 287 +L A+ +GCRG SR D + D ++ F L E+N PGMT S+FP+ A+ G SF + Sbjct: 249 KLVKRAYDVVGCRGWSRIDVMTD--AQGNFRLVEVNTNPGMTSHSLFPKSASTVGISFEQ 306 Query: 288 LLLWMVE 294 L++ ++E Sbjct: 307 LVVKILE 313 >gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] Length = 334 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL+ GK A AL G+ + +D++R SVG +LA + PDL +N LH Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLA-MAPDLVYNALH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTM 118 G GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ +L + Sbjct: 73 GVQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELL 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ ++ P+VIKP++GGS++G+ I +S LD L + + D++++E+YV G E+ Sbjct: 133 SAKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLD-LSAHADTLEDRMIVEEYVSGQEVQ 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ + Sbjct: 191 TAVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 GC+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 GCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355] Length = 305 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R M S Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + IS P +KP GSS+GI + + +P L ++ H D +L+E + Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L +I S+FY YE KY S ++ + PA + + E+Q+L Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L++ Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQGHFQL-LEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299 Query: 292 MVE 294 ++E Sbjct: 300 ILE 302 >gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] Length = 310 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA---FNV 57 +AV+MGG S EREVSL++G A +AL++ G+ ID+D ++ LK A FN Sbjct: 7 VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPE--HIVDQLKASGARVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RF 116 +HG +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K + + VP I ++ + Sbjct: 65 VHGLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKR 124 Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D + I P V+KP GSS+G++++K ++ + D LQ ++ +GD +L E + Sbjct: 125 DQDPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLD-DALQ-EAFQYGDHVLCEAFF 182 Query: 173 DGIELTCGV-MGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+ GV MG+ V V P +FY + KY+ +T+ PA + + +Q Sbjct: 183 TGKEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A++A+GC G++R+D + + LE+N PGMT S+ P+ AA G SF +L Sbjct: 243 KIAVAAYEALGCSGVARTDLMLAD-NGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDL 301 Query: 289 LLWMVEDA 296 +++ A Sbjct: 302 CEKILKTA 309 >gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 301 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 173/299 (57%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG VQ++L+ LEIPY+ G L+S++ MDK SK ++ + + P I + R Sbjct: 63 QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I + ++ W+ +++IE+++ G E+ Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKWDS--EVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P ++++EV+ +A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296 >gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] Length = 311 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL+SG A AL+D GF V ID L FN+LH Sbjct: 11 IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q +LE L IPYT G+++SAL+MDKMR+K + + G+PV +++ + T Sbjct: 71 GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130 Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D+Q +++ P ++KP GSS+G+ +KK + + + ++ H D +LIE+++ Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAV--DTALTHDDTVLIEEWLA 188 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E + V+G L I P +FY Y+ KY ++ + P+ + + E++ L Sbjct: 189 GQEFSVPVLGGKVLPSILIK-PAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ +GCRG SR D + D R +E+N PGMT S+FP A GYSF +L++ ++ Sbjct: 248 AYDIVGCRGWSRIDVMTDAQGR-FRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306 Query: 294 E 294 E Sbjct: 307 E 307 >gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 785 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 175/299 (58%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+V+++ G+P C S + T Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598 Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I S P V+K + GSS+G+ ++ D+ + L +++ +GD++L+E+Y++ Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPAL--DAAFTYGDEVLVEEYIE 656 Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G EL+ V G + + + EI VP S Y YE KY+ TH++PA I + +EV++ Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVP-SGRYDYESKYTPGGVTHLVPAPISAECRREVEQ 715 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A+ A GC G++R D L + + +E+N PGMT S+ P+ A G F EL Sbjct: 716 LARRAYAACGCNGLARVDLLLSA-ENQPYVIELNAVPGMTETSLVPDAARAVGIDFPEL 773 >gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] Length = 315 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 171/295 (57%), Gaps = 15/295 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S EREVSL+ + A+ + V + D + ++A + D+AF +LH Sbjct: 9 VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L+LLEIPY SG+L SAL+MDK +KQ+ G+ V + +D Sbjct: 69 GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128 Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP++ GSSLG+ ++ DQ L +++ DQ+++E+++ G Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLV--DQPAELVPALKLAFDFDDQVMVEEFIAGR 186 Query: 176 ELTCGVMGDASLD---VTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT GV+G+A L V EI +P + F+ Y+ KY + + + PA++P ++ EVQR Sbjct: 187 ELTGGVLGNADLTPLPVVEI-IPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRC 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A LAHQA+ RG SR+D + ++ LE N PGMTP S+ P+ AA G SF Sbjct: 246 ACLAHQALNLRGYSRTDMIL--AEGGLYVLETNTIPGMTPTSLLPQAAATHGLSF 298 >gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 171/299 (57%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GG S+EREVSLS AL + ++V + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPAL--ETAFAHDDQVMVEQFVAGR 186 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T GV+G+ +L V EI +P F+ Y+ KY S V PA++P + +VQ Sbjct: 187 EVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEW 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+ + +G SR+D + + ++ LE N PGMTP S+FP+ AA G F LL Sbjct: 246 ACRAHRVLRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDFGALL 302 >gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 306 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G ID L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +S I+ P +KP GSS+GI + ++P L ++ + + +L+E + Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L EI S+FY YE KY S ++ +V PA++ + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D R LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGRFQL-LEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] Length = 315 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 17/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNV 57 +A++ GG S EREVSL AL+ ++V + D + + A H+ D+AF + Sbjct: 6 LALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHI--DVAFLL 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q L+LL IPY +G+L SAL+MDK +K + G+PV P ++V Sbjct: 64 LHGVHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGD 123 Query: 118 M-DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + D++ +++ P V+KP++ GSS+G+ ++++ + +P L + H +++++E Y+ Sbjct: 124 LADTRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAAL--RLALRHDNEVMVEAYIK 181 Query: 174 GIELTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT GV+G+A L + I + +F+ YE KY S + PA + ++ ++ Q Sbjct: 182 GRELTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQA 241 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+++ RG SR+D + +++ LE N PGMTP S+ P+ AA AG F LL Sbjct: 242 YAMEAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALL 299 Query: 290 LWMV 293 +V Sbjct: 300 DRLV 303 >gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 306 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 181/304 (59%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG A +AL G+ ID +A+LK D FN+ Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKE---YNVANLKADGFDRVFNI 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114 LHG GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V N Sbjct: 65 LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKEN 124 Query: 115 RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ Q ++ P ++KP GSS+G+ +K + + + + ++ + +LIE++ Sbjct: 125 ANELNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKFD--NTILIEEW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G ELT V+G L I VP+ +FY Y+ KY S N+ + PA + ++ +E+ +L Sbjct: 183 LAGDELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +GCRG SR D + D ++ F L E+N PGMT S+FP+ A+ G SF +L++ Sbjct: 242 KRAYDVVGCRGWSRIDVMTD--AQGNFRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 287 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 25/300 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S + R Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSYRTVEEIER 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F P +IKP+ GSS G+ + + + + + + +IE Y+ G Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGE 166 Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKI 225 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVE 283 >gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11] gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] Length = 287 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 170/301 (56%), Gaps = 27/301 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D V A L + DLA+ VL Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNEYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114 HG GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + + Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKVPKAYRTVEKIE 121 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 RF P +IKP+ GSS G+ + + + + +IE Y+ G Sbjct: 122 RF----------PVIIKPVDEGSSKGVFLCNNREE------AEEAVKRLARPIIEDYIVG 165 Query: 175 IELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 166 EELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEK 224 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ V Sbjct: 225 VHSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITV 282 Query: 294 E 294 E Sbjct: 283 E 283 >gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 287 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 25/300 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S + R Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSYRPVEEIER 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F P +IKP+ GSS G+ + + + + + + +IE Y+ G Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGE 166 Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKI 225 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVE 283 >gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Mississippi] Length = 334 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL+ GK A AL G+ + +D++R SVG +LA + PDL +N LH Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLA-MAPDLVYNALH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTM 118 G GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ +L + Sbjct: 73 GVQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELL 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ ++ P+VIKP++GGS++G+ I +S LD L + + D++++E+YV G E+ Sbjct: 133 SAKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLD-LSAHADTLEDRMIVEEYVSGQEVQ 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ + Sbjct: 191 TAVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 GC+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 GCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] Length = 287 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 172/301 (57%), Gaps = 27/301 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D V A L + DLA+ VL Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNEYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114 HG GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + + Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAYRTVEEIE 121 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 RF P +IKP+ GSS G+ + + + + + + +IE Y+ G Sbjct: 122 RF----------PVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVG 165 Query: 175 IELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 166 EELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEK 224 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ V Sbjct: 225 VHSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITV 282 Query: 294 E 294 E Sbjct: 283 E 283 >gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 170/295 (57%), Gaps = 15/295 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T GV+G+ +L V EI +P F+ Y+ KY S V PA++P + +VQ Sbjct: 187 EVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEW 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+A+ +G SR+D + + ++ LE N PGMTP S+FP+ AA G F Sbjct: 246 ACRAHRALRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDF 298 >gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] Length = 311 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG+A AL +G + D +R V ++ + D AF VLH Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSK-DAD 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + +I+ P++IKP+ GSS+G+ ++K + P L +++ H ++ E++++G E Sbjct: 126 ADEVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKATE--HDAVVMAEKWINGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ +L V + PK FY YE KY+ + + +P + K +Q LA A Sbjct: 184 FTIVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+GC+G R D + D + FW LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 244 QAVGCKGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILE 301 >gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 306 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + + + L ++ ++H ++L+E + Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQT-ASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + R + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMMGGDGR-FYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] Length = 287 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 171/300 (57%), Gaps = 25/300 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + + R Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAYRTVEEIER 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F P +IKP+ GSS G+ + + + + + + +IE Y+ G Sbjct: 123 F----------PVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGE 166 Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 167 ELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKV 225 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 226 HSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283 >gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703] Length = 306 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 168/299 (56%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR T Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124 Query: 118 MDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + S+ L + P ++KP GSS+G+ K DQ+ L ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGM--SKVDQANQLHSALVEAFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+QA+GC G R D + D S F+ LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQD--SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 298 >gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont] Length = 306 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +QA+LE L++PYT SG++ASA++MDK+RSK + G+P + + R Sbjct: 65 RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q I+ P +KP GSS+GI + + +++P L + ++ H D +L+E + Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAALQE--AFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L I S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGIVGDEILPSIRIQTA-SEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AGYSF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] Length = 338 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 21/308 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVLMGG+S+ERE+SL SG+ AL G D +R + + LK D F Sbjct: 24 VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDI----SELKKDEFARCFI 79 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ LELL IPYT SG++AS++++DK+ +K+V+ + G+P +L+ R Sbjct: 80 ALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRG 139 Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + S + + P ++KP + GSS+G+ + + + + Q+ + +L EQ Sbjct: 140 SYGSADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDA--DILCEQ 197 Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G E+TC V+G S L V I P + Y Y+ KY + + +++P +P Sbjct: 198 FISGDEVTCPVLGTGSEARALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPCGLPEGEEAV 256 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +Q+L A++ + CRG +R+D + D ++RK + LEIN PGMT S+ P A AG S+ Sbjct: 257 IQQLVLQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYE 316 Query: 287 ELLLWMVE 294 +L + +++ Sbjct: 317 DLCIEVLK 324 >gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] Length = 306 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG +D+ + L D AF LHG Sbjct: 5 VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SG++ASA++MDK+R+K + CG+PV P + + R MD+ Sbjct: 65 RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + ++ L++ ++ H D +L+E + Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAALVE--AFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L I V S+FY YE KY S ++ + P+ + + E+ + Sbjct: 183 LSGPEYTVAVIGDEILPSIRIKV-VSEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P AG SF +L+ Sbjct: 242 IKAWRALGCSGWGRVDVMMGG-DGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829] gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 317 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 173/308 (56%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S E ++SL SG C AL+ AGF V DV D S LA + D+AF + Sbjct: 11 IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117 HG +GEDG +Q +LE+L IPYT SG+LASA+ K +K + G+P + L + Sbjct: 71 HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130 Query: 118 MDS---QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D QH++ P +KP GSS G+ +++ + + D ++ G +LIEQ Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDL-ADAIKEEQKT-GTHVLIEQA 188 Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T V+G+ +L + EI V + FY + K HV+PA++ D+Y Q Sbjct: 189 IVGTEITVPVIGNHHPHALPIVEI-VFNAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH A+GCRG+SR+DF+ D + + LE N+ PGMT S+ P+ AA+ G F EL Sbjct: 248 ELAEQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPEL 306 Query: 289 LLWMVEDA 296 +VE A Sbjct: 307 CKRLVEYA 314 >gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 312 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D L D F LHG Sbjct: 6 VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 FGEDG VQ LELL IPYT SG++AS++SMDK+ +K++ G+ P + T Sbjct: 66 RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GSS+G V+ DQ D + + H +L EQ++ G E+ Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQ---CDAAYALASQHDSHVLCEQFIAGDEV 182 Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V G +S L V I P+ + Y Y+ KY + + +++PA +P + +Q L Sbjct: 183 TCPVWGPSSAPEALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCK 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+Q +GCRG +R+D + D +R + LEIN PGMT S+ P A+ AG S+ EL + ++ Sbjct: 242 AYQVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLL 301 Query: 294 EDAS 297 + + Sbjct: 302 QSTA 305 >gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 299 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 172/302 (56%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57 +A+L GG S ERE+S+ SGKA AL G+ D+ D+ + +L + KPDLAF V Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEILEY-KPDLAFIV 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QAILE L IPYT S + S ++MDK+ +K + + +P I FT Sbjct: 63 LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIF---FT 119 Query: 118 MDSQHL-ISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + L P P V+K GSS+G+ ++ Q + +N D++LIE+++ G Sbjct: 120 EEKEALNYRPDFPAVVKAPTEGSSIGVYIVNNQQE--YENAVKEVFNLDDKVLIEKFIKG 177 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++ D D+ E+ V + FY + KY + + ++ PA++ D+YK VQ L Sbjct: 178 RELTVSILDDEVFDIVEVVVSEG-FYDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKV 236 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + C+G +R D + + + + LE+N PGMT S+ P+ A+ G +F +L+ +++ Sbjct: 237 YKLLNCKGPARVDIILEN-DKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIK 295 Query: 295 DA 296 ++ Sbjct: 296 NS 297 >gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60] Length = 306 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L++AG +D R L + F LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 TMD+ I+ P ++KP + GSS+G+ K + D + H D++LIE++ Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGM--SKVSEPCEFDPALVEALRHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I + FY YE KY S + + P+ + + + + L Sbjct: 183 LAGPEYTVAFIGDEILPSIRIQAAGA-FYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 RRAYKALGCSGWGRVDVMQDA-AGEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] Length = 309 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 173/304 (56%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL +G D + L K D F +LHG Sbjct: 12 VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-------CPSILV 113 +GEDG VQ LEL++IPYT SG++ASA++MDK R+K V + G+P+ PS Sbjct: 72 RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPS--- 128 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYV 172 + + HL P +V KP GSS+G+ +K +P+ +++ + D+++I E ++ Sbjct: 129 -DWNAVADHLDLPLFV-KPSSEGSSVGVTKVKTVDELPIAYAEAAKY---DKVVIAESFM 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ +L V +I P ++FY YE KY ++ ++ P + ++ E+Q LA Sbjct: 184 SGGEYTATILNGRALPVIKIE-PANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLAL 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LA Q IGC+G R DFL K + LEIN PGMT S+ P A AG SF +L++ + Sbjct: 243 LAFQLIGCQGWGRVDFLRGD-DGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQI 301 Query: 293 VEDA 296 +E A Sbjct: 302 LEGA 305 >gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A L +AG +D+ L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+PV P + ++R D Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124 Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP + GSS+G+ + L++ ++ H D +L+E++ Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDALVE--AFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +G+ L I P FY YE KY S + + P+ + D +E+ LA Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAPGV-FYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++++ C G R D + D + + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 RKAYKSLDCSGWGRVDVMMDS-DGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDAS 297 ++E A+ Sbjct: 301 ILELAN 306 >gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] Length = 305 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVL+GG S+ERE+SL SG+A +AL+ + D G L +L D F Sbjct: 9 VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFD---PAGQPLENLLQQGFDRVFIA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114 LHG +GEDG VQ LEL+E+PYT SGILASAL+MDK R+K + + G+ ++++ Sbjct: 66 LHGRYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASS 125 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 RF D + P +IKP + GS+LG+ + +Q ++ ++ +L EQ++ G Sbjct: 126 RFR-DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAYQAAAEYD--SLVLAEQFIQG 182 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 IELT ++ D L + I V + Y Y+ KY S ++ + P+ + + +Q A A Sbjct: 183 IELTAAILDDMPLPLVRIDVAEG-LYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYA 241 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H+ +GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E Sbjct: 242 HRILGCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILE 300 >gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] Length = 291 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 178/294 (60%), Gaps = 15/294 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ + L +KPD F LHG Sbjct: 3 VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 +GEDG VQ +LE+L+IPYT S +ASA+S+DK +K++V S G+ P + + + Sbjct: 63 RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHGDQLLIEQYVDGI 175 +++ P V+KP++ GSS+G+ +++ + + LDLL+ + +++++E++V+G Sbjct: 123 NTEW-NKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKT-----ERVMVEEFVEGR 176 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++T G++ +L V EI +PK Y YE KY+ S + + L K++Q ++ Sbjct: 177 DMTVGILKGEALPVVEI-IPKKGVYDYECKYTKGMSEYRILKDEKLS--KKLQEISLKIS 233 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + + +R DF K+F+LE+N PGMT +S+ P A G F++L+ Sbjct: 234 KFLSLKDFARIDFRVTK-EGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLI 286 >gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103] gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103] Length = 305 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 17/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R M S Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIE 169 + IS P +KP GSS+GI + + D S L+ ++ H D +L+E Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAALE----EAFRHDDNVLVE 179 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T G++GD L +I S+FY YE KY S ++ + PA + + E+Q+ Sbjct: 180 AFLSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQ 238 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L+ Sbjct: 239 LVWSAWRALGCSGWGRVDVMTDDQGHFQL-LEANTSPGMTSHSLVPMAAKQAGLTFSQLV 297 Query: 290 LWMVE 294 + ++E Sbjct: 298 VRILE 302 >gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] Length = 306 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 169/304 (55%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG A + L +AG ID+ D V + H + F LH Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKV-FIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 64 GRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYA 123 Query: 118 -MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q LI+ P ++KP + GSS+G+ + + ++ L + H D +L+E+ Sbjct: 124 GAEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++GD L I P FY Y+ KY S ++ + P+ + + E+ L Sbjct: 182 WLSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAAL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 241 ALRAYRGLDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVA 299 Query: 291 WMVE 294 ++E Sbjct: 300 RILE 303 >gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] Length = 319 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/313 (36%), Positives = 168/313 (53%), Gaps = 25/313 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER++SL SG AL+DAG D + L F LHG Sbjct: 13 VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K+V + G+P + R D Sbjct: 73 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYV---RLAPDE 129 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168 Q + P ++KP + GSS+G+ + + +Q + S H +L Sbjct: 130 QTPERVRGVPDDLGLPLIVKPPREGSSIGVTKV-----LGYSQMQDAVALSARHDPDVLC 184 Query: 169 EQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 E+++DG E+TC V+G+ + L V I VP Y Y+ KY + ++ P+ +P D Sbjct: 185 EEFIDGAEVTCPVLGEGANARALPVIRI-VPPEAGYDYQNKYFTDEVKYLCPSGLPADEE 243 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 E+QR+ A++A+GCRG R+D + RK F LE+N PGMT S+ P A AG Sbjct: 244 AEIQRIVLAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLG 303 Query: 285 FRELLLWMVEDAS 297 + +L L +++ A+ Sbjct: 304 YEQLCLHILQGAA 316 >gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 306 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] Length = 290 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 167/296 (56%), Gaps = 10/296 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSL SG+A +AL ID ++ L D AF LHG GE Sbjct: 1 MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+ G+P S+LV + D +I Sbjct: 61 DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDS-DFNSII 119 Query: 125 SP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P ++KP GSS+GI +K + ++++S H D ++ E Y+ G E T + Sbjct: 120 EKLGLPLMVKPSLEGSSVGITKVKNVDELA-SAVETASQFHCD-IIAEHYISGTEYTAAI 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D +L + + P+ +FY + KY+ ++++ P +P +E+Q +A A ++G + Sbjct: 178 LHDTALPLIRLETPR-EFYDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAK 236 Query: 242 GISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL D S+ WL EIN+ PGMT S+ P A AG SF EL+L ++ A Sbjct: 237 GWGRVDFLCDETSKP--WLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290 >gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] Length = 336 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G + + +D++R L + PDL +N LHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 GEDG +L++L + YTHS + AS++ MDK+ +K V+ S G+ S+L + Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP+ GGS++G+ I +S LDL + G ++L+E+Y+ G E+ Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFS-RSEYLDLSVHADALEG-RMLVEEYIPGQEVHT 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E + + Y Y+ KY HV PA + D+Y A +Q +G Sbjct: 193 AVFLGRAIGTMEF-LFEGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298 CR +SR DF +D ++ + LEIN PGMT S PE + G F +++ ++V+DA C Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311 >gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688] gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688] Length = 320 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 166/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S EREVSL SG A +AL G + + D +R + +LA D F LH Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHELLAF---DRVFISLH 82 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ L++ F Sbjct: 83 GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q L P +V KP GSS+GI +K QS L + ++ E++V G E Sbjct: 143 AAVEQRLGLPMFV-KPANEGSSIGISKVK--QSGALKAAYELAAKSDPLVIAERFVGGGE 199 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T G++GD +L + I VP ++FY +E KY ++ ++ P +P + ++ A A + Sbjct: 200 YTVGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFR 258 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG R DFL D R F LE+N PGMT S+ P A G SF EL++ ++E Sbjct: 259 AIGGRGWGRVDFLMDEAGRHYF-LEVNTSPGMTDHSLVPMAAKANGISFDELVIRILE 315 >gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] Length = 309 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 169/304 (55%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL+SGKA +AL+ G D + LA LK AFN+ Sbjct: 10 IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETN---LAELKTQGFQAAFNI 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113 LHG +GEDG VQ LE L IPYT G+LASAL MDK R K + + G+P+ P+ V Sbjct: 67 LHGTYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPI-PAFAVLHDD 125 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + FT Q L P IKP GSS+G+ + + + Q N ++L EQ++ Sbjct: 126 SDFTAVEQQL-GLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMS 184 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E TCGV+ +L I +P++DFY +E KY ++ ++ P+ + + + +Q LA Sbjct: 185 GGEYTCGVLNQQALPSIRI-IPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQ 243 Query: 234 AHQAIGCRGI-SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A AIG R DFL D + K++ LE+N PGMT S+ P+ A G F +L + + Sbjct: 244 AFAAIGGGNTCGRVDFLKDA-AGKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAI 302 Query: 293 VEDA 296 ++ A Sbjct: 303 LQTA 306 >gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 287 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 25/300 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG A +L+ G+ + +D + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S + R Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTKQIAQSVGIKTPKSYRTVEEIER 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F P +IKP+ GSS G+ + + + + + + +IE Y+ G Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGE 166 Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKI 225 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H G +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283 >gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] Length = 313 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 168/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 14 IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 74 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ + ++ P ++KP GSS+G+ +K L+ + +LIE+++ G Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAE--LESAVDFALKFDRTVLIEEWLAG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + +E++ L A Sbjct: 192 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 251 YDVVGCRGWSRIDVIADA-EGNFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309 >gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 306 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L + G +D L L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +QA+LE +IPYT SG++ASA++MDK+RSK + G+P + + R Sbjct: 65 RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D+Q L + P +KP GSS+GI + ++P L + ++ H D +L+E + Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L +I S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGILGDQILPSIKIQ-SASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-EDNFQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 306 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8] gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8] Length = 301 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/297 (41%), Positives = 165/297 (55%), Gaps = 18/297 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVL+GG S EREVSL SG A +AL+ G D L L+ D A LH Sbjct: 7 VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFD---PATRPLHDLESFDTAMISLH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G FGEDG +Q LELL IPYT SG++ASA+ MDK R+K + S+ GV LV+ F Sbjct: 64 GRFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDF 123 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLI-EQYVD 173 Q L P +V KP GSS+GI +K+ + +L S D L+I EQ+V Sbjct: 124 EAIEQRLGLPLFV-KPANEGSSIGISKVKQTGGLKAAYELAAKS-----DPLVIAEQFVG 177 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T G++GD +L + I VPK++FY +E KY ++ + P + + ++Q+ A L Sbjct: 178 GGEYTVGILGDQALPIVRI-VPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALL 236 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A IGC+G R DFL D + F LE+N PGMT S+ P A AG SF EL++ Sbjct: 237 AFNTIGCQGWGRVDFLMDEAGKHYF-LEVNTSPGMTDHSLVPMAAKAAGISFDELVV 292 >gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4] gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4] Length = 320 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 166/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S EREVSL SG A +AL G + + D +R + +LA D F LH Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHELLAF---DRVFISLH 82 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ L++ F Sbjct: 83 GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q L P +V KP GSS+GI +K QS L + ++ E++V G E Sbjct: 143 AAVEQRLGLPMFV-KPANEGSSIGISKVK--QSGALKAAYELAAKSDPLVIAERFVGGGE 199 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T G++GD +L + I VP ++FY +E KY ++ ++ P +P + ++ A A + Sbjct: 200 YTVGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFR 258 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG R DFL D R F LE+N PGMT S+ P A G SF EL++ ++E Sbjct: 259 AIGGRGWGRVDFLMDESGRHYF-LEVNTSPGMTDHSLVPMAAKANGISFDELVIRILE 315 >gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] Length = 308 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG SSERE+SL SGKA AL+ G D + L+ LK D+AFN+ Sbjct: 7 VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFD---PAEMELSELKTQNFDMAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114 LHG +GEDG VQ LE L IPYT G+LASAL MDK R K + S+ G+PV P +++ Sbjct: 64 LHGTYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDS 123 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 F Q L P IKP GSS+G++ IK+ + Q +L EQ++ G Sbjct: 124 DFAAVEQKL-GLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSG 182 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E TCGV +L I +P+++FY YE KY ++ ++ P+ + + + +Q LA A Sbjct: 183 GEYTCGVFNGKALPSIHI-IPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEA 241 Query: 235 HQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AI G + R DFL D + ++ LE N PGMT S+ P+ A G SF +L + ++ Sbjct: 242 FAAIGGGNTLGRIDFLKDS-AGCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVL 300 Query: 294 EDASCLR 300 ++A R Sbjct: 301 QNAQDER 307 >gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 336 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 165/328 (50%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50 +AVL GG SSEREVS++S +AL D G V ID V+ V +A+ Sbjct: 3 IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62 Query: 51 P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 P D+ F LHG GEDG +QA+L+ IPYT SG+L Sbjct: 63 PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK SK++ GVP I+ + I P ++KP GS++G+ V+K Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +++W+H +++IE++V G EL GV+ +L V EI + + Y+ KY Sbjct: 183 PEQLEEAIATAAAWDH--EVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + PA +P + EVQRLA AH+A+ SR DF D R ++ LE N P Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQGR-LWCLEANTLP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GMT S+ P+ AA G F EL + E Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCE 327 >gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] Length = 306 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 169/308 (54%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + +++F S Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124 Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIE 169 + L++ P ++KP GSS+G+ + D S L L ++ + +LIE Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAALAL----AFRFDETVLIE 180 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E T V+G+ +L I P FY YE KY S + + P+ + ++ + Sbjct: 181 KWLSGPEYTVAVLGEQTLPSIRIQ-PPGVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQ 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L+ Sbjct: 240 LAMRAYQAVGCRGWGRVDVMQDS-DGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLV 298 Query: 290 LWMVEDAS 297 + ++E A+ Sbjct: 299 VRILELAN 306 >gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] Length = 311 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 172/300 (57%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG+A AL +G + D +R V ++ + D AF VLH Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSK-DAD 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + +I+ P++IKP+ GSS+G+ ++K + L +++ H ++ E++++G E Sbjct: 126 ADEVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKATE--HDAVVMAEKWINGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ +L V + PK FY YE KY+ + + +P + K +Q LA A Sbjct: 184 FTIVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+GC+G R D + D FW LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 244 QAVGCKGWGRIDAMQDEQGN--FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILE 301 >gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 319 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKTASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 +R Sbjct: 316 PVR 318 >gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] Length = 305 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 171/301 (56%), Gaps = 14/301 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG 60 VL GG S+EREVSL SG+A +AL+ G V+ I D + G + L L PD F LHG Sbjct: 10 VLYGGDSAEREVSLKSGEAILAALQRGG--VAPIAFDPAEGGLAGLEALAPDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+LL IPYT SG+LASAL MDK R+K V + G+P +++N + D Sbjct: 68 RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAES-DW 126 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ P ++KP+ GS+LGI ++ D + L + + +++ E+++ G E Sbjct: 127 NAVVERLGLPLIVKPVHEGSTLGITIV--DSAETLAAAYRDAARYDARVMAERFIQGEEY 184 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L + VP S FY YE KY S + + LP + K + L A +A Sbjct: 185 TVSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG R D + D R FW LE+N PGMT S+ P+ AA+AG F L+L +++ A Sbjct: 244 VGCRGWGRVDVMRDDQGR--FWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301 Query: 297 S 297 Sbjct: 302 G 302 >gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12] gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] Length = 288 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 172/297 (57%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSE+E+S+ SG+A +L+ G+ + + ++++ + DLA+ LH Sbjct: 3 IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT S + A A+SM+K+ +K++ S G+ + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSQVTACAISMNKLLTKKIASFEGIRMAKTY------AN 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP + GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEISGY-----AMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I ++ Y YE KY+ S H PA+I Y+E A H+A+G Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VE+A Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEA 286 >gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] Length = 313 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 24/309 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV----SQIDVDRSVGLVLAHLKPDLAFN 56 +A++ GG+SSER+VSL+ GK +AL+ A ++V S+ D+ R LV D AF Sbjct: 6 VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLAR---LVQEAPGIDTAFV 62 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--N 114 LHG GEDG +Q +L+LL +PY SG+L SAL+M+K+ +K+V G+PV P +V N Sbjct: 63 NLHGVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSEN 122 Query: 115 R-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 R F + P V+KP GGSS+G+ ++K Q L + HG +L+E Sbjct: 123 RDADGSFLDAHADALGFPLVVKPACGGSSIGMSIVK--QVSELAPAVDKALAHGPDVLLE 180 Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIY 224 Y+ G ELT GV+G+ L V EI +P F+ YE KY+ ++ + PA +P D+ Sbjct: 181 AYIQGRELTGGVIGNDDPEPLPVVEI-IPGDGYGFFDYEAKYTPGATSEICPAPVPEDLS 239 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A AH A+ C+G SR+D + +F LE N PGM P S+ P A AG + Sbjct: 240 ARVRDYACRAHSALFCKGYSRTDMIA--TDTDLFVLETNTIPGMGPTSLLPLAAKAAGMA 297 Query: 285 FRELLLWMV 293 F +LL ++ Sbjct: 298 FGDLLDRLI 306 >gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132] gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132] Length = 303 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 165/295 (55%), Gaps = 8/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61 ++ GG S ER+VSLS + SAL++ G V+ D D L+ D AF LHG Sbjct: 5 LIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLHGT 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDGL+QA+L+ PY +G AS L+++K SK+V + G+ L+ Sbjct: 65 PGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGRET 124 Query: 122 HL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L +S P +KP KGGSSLG+ ++K+ + P L + L+E ++ G+ELTCG Sbjct: 125 PLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAAL--DKVFAMCQSALVETFIPGVELTCG 182 Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ +L + I P+ SDF+ YE KY++ + + PA + + + +Q +AH A+ Sbjct: 183 ILGNEALPLIMI-TPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAAL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G SR DF+ P + + LE+N PGMTP S+ P AA+ GYSF EL+ ++ Sbjct: 242 GLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELI 295 >gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 301 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 172/299 (57%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG VQ++L+ L IPY+ G L+S++ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I +++ W+ +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKWDS--EVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P +++EV+++A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296 >gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1] Length = 324 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 167/293 (56%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG A +AL+ AG IDV + L K D AF +LHG Sbjct: 20 VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE+ IPYT SGILASAL+MDK+R+KQV + G+P P V R D Sbjct: 80 RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPT-PRHAVLRSEADC 138 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ + + +D +++S + Q+L+EQ++ G E Sbjct: 139 ISAATELGFPLIVKPAHEGSSIGMAKVSSASEL-IDAWKAAS-TYDSQVLVEQWIHGPEF 196 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + D L + P + FY Y+ KY + ++ + +P + KE+ L A +A Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +G G R+D + D K ++LE+N PGMT S+ P A AG F++L+L Sbjct: 256 LGIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVL 307 >gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] Length = 303 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 167/302 (55%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+A +AL + G D + L D AFN+LHG Sbjct: 7 VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG VQ LE L I YT G+LASA+ MDK R K + G+PV P V R D Sbjct: 67 IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPV-PDYEVLREDSDF 125 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P +KP GSS+G++ IK+ +++ +L Q + +++ E+++ G Sbjct: 126 DAVERKLGLPLFVKPANEGSSVGVVKIKEKGRLKNVYRELRQ-----YKGEIIAEKFIGG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E TC ++G +L I +P ++FY E KY ++ ++ P+ + K+++ L A Sbjct: 181 GEYTCAILGGEALPSVRI-IPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRA 239 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG R DFL D R ++ LE N PGMT S+ P+ AA AG F +L L +++ Sbjct: 240 FDAIGGRGWGRIDFLKDKNGR-LYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQ 298 Query: 295 DA 296 A Sbjct: 299 TA 300 >gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 306 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 306 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 301 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I + + W+ +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKWDS--EVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P +++EV+ +A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296 >gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 785 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 175/299 (58%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+V+++ +P C S + T Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598 Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D+ I S P V+K + GSS+G+ ++ +D+ + L +++++GD++LIE++++ Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPAL--DAAFSYGDEVLIEEFIE 656 Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G + + V EI S Y Y+ KY+ STH++PA + EV++ Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIR-SVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQ 715 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A+ A GC G++R D L +R + +E+N PGMT S+ P+ A G F EL Sbjct: 716 LARRAYAACGCSGLARVDLLLSAENRP-YVIELNAVPGMTETSLVPDAARALGIEFPEL 773 >gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 306 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 306 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] Length = 306 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 170/303 (56%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S +++ P ++KP + GSS+G+ ++++ ++ L + ++ H +++LIE++ Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + ++ +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 326 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/293 (37%), Positives = 171/293 (58%), Gaps = 9/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG EREVSL +G+A +ALE G V+++ + +L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K++ +P + R Sbjct: 65 RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124 Query: 118 MDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ +H + P V+KP GGSSLG+ ++++ +++ + ++ + G + L+E++V G E Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAVAEACRY--GGEALVERFVRGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L EIA P+ F YE KY + + LP ++ V+ LA A + Sbjct: 183 VTVGILGGEVLGSCEIAAPREGF-DYEAKYKG-GTNYFLPPRLSATRLANVESLALSAWR 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+GCRG R D + + F LE+N PG+TP S+ P++AA G F +L+ Sbjct: 241 ALGCRGYGRVDLICSE-EQNDFVLEVNTLPGLTPTSLLPKIAAQRGIGFAQLV 292 >gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1] gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR NE0994 [Aromatoleum aromaticum EbN1] Length = 309 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A +AL+ AG D + +L D AF LHG Sbjct: 13 VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P P + D Sbjct: 73 RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPT-PRYAILAGDTDW 131 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +++ P +KP+ GSS+G + + +++ ++ D +L E+++ G EL Sbjct: 132 EAVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAAWERAARFD--DLVLAEEFIVGAEL 189 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + + +L V I P Y Y+ KY + + ++ P+ +P + + +Q L + +A Sbjct: 190 TVPFLAERALPVIRIEAPGGK-YDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARA 248 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG R+D + R + LE+N PGMT S+ P A G F L L ++EDA Sbjct: 249 LGCRGWGRADLMLTGDGRP-YLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306 >gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] Length = 307 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/296 (37%), Positives = 167/296 (56%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A SAL G ID L D AF VLHG Sbjct: 8 VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF-- 116 GEDG +Q +L L+IPYT S +L+SA++MDK ++KQ+ S G+P I+ N + Sbjct: 68 RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127 Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D +S ++KP+ GSS+G+ + + + LL + ++ ++L+E +++G Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKALLDAFKFDK--KVLLETWIEG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ A+L ++A +DFY Y+ KY S + + P + + + +LA A Sbjct: 186 EEYTVSMLSGAALPAIKMAT-DNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +IGC+G R DF+ D +++ F LEIN PGMT S+ P+ A AGYSF +L+L Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVL 299 >gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 306 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 170/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL+SG A +AL + G +D L + D F LHG Sbjct: 5 IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + V R +S Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P ++KP + GSS+G+ K D++ L + ++ H +++LIE++ Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGM--SKVDKADDLTSALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + + +E++ L Sbjct: 183 LGGPEFTVAMLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMQDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 306 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 170/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + +PV P + + R + M Sbjct: 65 RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124 Query: 119 ---DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 DS + + P ++KP + GSS+G+ K D+++ L + ++ H +++LIE++ Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGM--SKVDKAVDLADALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + E+Q L Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 306 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] Length = 287 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 166/297 (55%), Gaps = 19/297 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ G+ + +D V A L D LA+ VL Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNDYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ + Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAYRT----- 116 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS G+ + + + + +IE Y+ G ELT Sbjct: 117 -VEEIEKFPVIIKPVDEGSSKGVFLCNNREE------AEKAVKKIVRPIIEDYIVGEELT 169 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A H Sbjct: 170 VGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSE 228 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 229 FGMKGTSRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283 >gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum SCRI1043] Length = 306 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 171/304 (56%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124 Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ L++ P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ + + + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++A+ C G R DF+ D S F+ LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVDCSGWGRVDFMLD--SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 306 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 312 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNV 57 + V+MGG S EREVSL++G A AL++ G+ ID+D S+ + A +K + FN Sbjct: 7 IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVK--VVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114 +HG +GEDG +QA+LE+L +PYT SG+L+SA++M+K +K++ + GV + + + Sbjct: 65 VHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKD 124 Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 R T D + P V+KP + GSS+G+ ++KK++ LD ++++G +L E + Sbjct: 125 RQTAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEED--LDKALEEAFSYGKLVLAEAFF 182 Query: 173 DGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+ GVM D+S + + + P DFY Y KY+ +T+ PA + K +Q Sbjct: 183 TGKEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A A++A+GC G++R D + D LE+N PGMT S+ P+ A G SF +L Sbjct: 243 EEAVKAYKALGCSGVARVDEMVDA-EGNFICLEVNTIPGMTATSLVPKAAKAMGLSFPDL 301 Query: 289 LLWMVEDA 296 ++E A Sbjct: 302 CEKILETA 309 >gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] Length = 313 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 171/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV LA K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPT-PRHAVLTSQADC 133 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ ++ +++ ++ ++ Q+L+EQ++ G E Sbjct: 134 EAAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAAWQDAARYD--SQVLVEQWIAGPEY 191 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P S FY Y+ KY + ++ + +P + + E++ L A +A Sbjct: 192 TVAVLRGEVLPPIGLGTPHS-FYDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEA 250 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 251 VGTQGWARADVMQDASGQ--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADS 308 >gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/296 (37%), Positives = 172/296 (58%), Gaps = 17/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V P+ + R Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRV-PAWEMARPADI 127 Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 128 AEPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAG 185 Query: 175 IELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E+T GV+G+ +L V EI +P F+ Y+ KY S V PA++P + +VQ Sbjct: 186 REVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQE 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+ + +G SR+D + + ++ LE N PGMTP S+FP+ AA G F Sbjct: 245 WACRAHRVLRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDF 298 >gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 306 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 170/304 (55%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG +D L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115 GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV G+ V P + +N R Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124 Query: 116 FTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T DSQ + P ++KP GSS+G+ + + + L +++ + LL+E+ Sbjct: 125 LT-DSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++GD +L I P + FY Y+ KY S + + P+ + + +++ L Sbjct: 182 WLHGPEYTVAILGDTALPSIRIQ-PAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAEL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+Q++GC G R D + D + LE+N PGMT S+ P A AG SF +L++ Sbjct: 241 ALKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] Length = 304 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 176/303 (58%), Gaps = 14/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ +A+E G + ID ++ K D F LHG Sbjct: 3 IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ MD Sbjct: 63 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122 Query: 120 --SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVD 173 L+S P V+KP+ G S+G+ + + DLL++ +++ + D +LIE ++ Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNA----DLLEAVITAFEYDDDILIESFIA 178 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E TC V+ +L + +I + F+ Y+ K+ S ++T+ P+ + + +++Q LA Sbjct: 179 GREYTCAVLNGEALPIVQIRSEQ--FFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALN 236 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ A+GCRG R D + D S VF +E+N PGMT S+FP A AG SF +++ ++ Sbjct: 237 AYNALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLL 295 Query: 294 EDA 296 + A Sbjct: 296 DSA 298 >gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 306 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++L+E++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 319 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ P+ I + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 306 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 16/297 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SGKA AL +G D L A LHG Sbjct: 10 VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LELL IPYT SG+LASAL+MDK R+K + S G+ IL++ F Sbjct: 70 RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD 173 ++ L P ++KP + GS++G+ +++ + +++W+ H +L EQ+++ Sbjct: 130 AVAKEL-GLPLIVKPSREGSTIGLSKVREAGEV------AAAWHLAARHDAMVLAEQFIE 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++GD +L + I V + D Y Y+ KY S + + P+ + + +++ A Sbjct: 183 GTELTASILGDVALPLVRIQV-EGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQ 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AH+ +GC G R D + D S ++LE N PGMT S+ P A AG SF EL+L Sbjct: 242 AHRLLGCEGWGRVDLILDK-SGTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVL 297 >gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 12/294 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S+E EVS +G A A AL G+ VS ++++ R+V + +LK D+ FN +HG Sbjct: 8 VLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q LE+ EIPYT SGI+A ++ M+K SK V +P SI N + Sbjct: 68 YGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQSKE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I S P V+KP GSS+G+ ++K++ + + ++ +++ L++EQY++G Sbjct: 128 DIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAVTEALTYD--PILVVEQYLNG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L + EI P S Y Y KY++ + +++PA I D+ KE+Q + L Sbjct: 186 REFTVSVLDGKALAIIEIR-PHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++ + G R D + D ++ LE N PGMT S+ P+ A G F EL Sbjct: 245 YREVQASGAIRVDVMTDD-KDNMYVLEYNTIPGMTATSLVPKAAKEVGIDFPEL 297 >gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 308 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + Sbjct: 69 RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128 Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P+ V+KP GSS+G+ ++ + + L + + +++E+YV G E Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLV--NAAAELGPACRDAAGYAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA+IP + V A AH+ Sbjct: 187 VDVAVLEGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 302 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 164/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL G S EREVSL SG+A +ALE G +V+ +D + + L PD + LHG Sbjct: 3 ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GE+G +Q +L+ L +PY SG+ ASA++MDK+ SK++ + G+P + S Sbjct: 63 DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122 Query: 121 Q-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P V+KP GGS++G+ + ++ +P + + + Q+LIEQY+ G Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAV--RLALQYSPQVLIEQYIPGQ 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+T ++ L EI DFY YE KY+ S H++P + D+ K A+ A Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G G+ R+D DP R + LE+N PGMT S+ PE A AG F +L+ +++ Sbjct: 241 RAVGSTGLVRADVRVDPEGRP-WVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIID 298 >gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 306 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L +AG +D L + D F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R F M Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 Q ++ P ++KP + GSS+G+ K D++ L + ++ H +++LIE++ Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGM--SKVDKADDLSSALAVAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWHVLGCSGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] Length = 306 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D +L + F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S L++ P ++KP + GSS+G+ +++ ++ L + ++ H +++LIE++ Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVALLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 328 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 28/311 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKPD 52 +AVL GG EREVSL SG A SALE+AGFKV D+ R G + D Sbjct: 17 VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHI------D 70 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 F LHG++GEDG VQ+ L+ L +PY+ SG LA LSMDK +K +++ GVP +L Sbjct: 71 SVFIALHGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVL 130 Query: 113 V---NRFTMD-SQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 V + F+++ ++H + V+KP GGS+LG+ V+ Q + + +W + + Sbjct: 131 VLKGSSFSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRC 188 Query: 167 LIEQYVDGIELTCGVMGDASL--DVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +IE+Y+DG++L V + E+ + P+ FY Y+ KY+ + +++PA I Sbjct: 189 VIEKYIDGVDLAVTVWKQKGYLEALPEVMICPEKGFYDYDSKYTPGKTRYIVPAPFDPSI 248 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAG 282 ++ ++A A +A+ C G +R DF + + W LE+N PGMT S+ P+ AA AG Sbjct: 249 RSDIHQMACRAFEALSCEGYARVDFRVE--EKGTPWVLEVNTAPGMTGTSLTPKAAAAAG 306 Query: 283 YSFRELLLWMV 293 Y F L +V Sbjct: 307 YDFPAFLSHVV 317 >gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 318 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 169/300 (56%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138 Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + I P ++KP GSS+G+ + DQ+ D + ++ G LL+EQ ++ Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GDA+L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDAALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313 >gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] Length = 303 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSER VSL SG A +AL+ G D + LA LK AFN+ Sbjct: 7 VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETP---LADLKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG +GEDG+VQ LEL IPYT SG+ ASA+ MDK R K + + G+PV P V R Sbjct: 64 LHGTYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLRED 122 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + + P +KP GSS+G++ +K+ + D+ G +++ E+++ G Sbjct: 123 TDFEAVEKRLGLPMFVKPANEGSSVGVVKVKEKGRLK-DVYAELKHMKG-EIIAERFIGG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E +C V+G L I VP ++FY YE KY+ ++ + P+ + + ++ LA Sbjct: 181 GEYSCPVLGGRGLPSILI-VPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRG 239 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +AIG G R DFL D L K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 240 AEAIGAEGCVRVDFLKD-LDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILK 298 Query: 295 DA 296 A Sbjct: 299 TA 300 >gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48] gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48] Length = 318 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 166/304 (54%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPT-PRHAVLASEQDC 138 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ + +Q + ++ ++ Q+L+EQ++ G E Sbjct: 139 VAASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAAKYD--SQVLVEQWIHGPEF 196 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P FY Y+ KY + ++ + +P + +E+ L A A Sbjct: 197 TIAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 256 IGIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 313 Query: 297 SCLR 300 R Sbjct: 314 VATR 317 >gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] Length = 303 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/298 (36%), Positives = 170/298 (57%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID+ L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R ++ Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S +I+ P +KP GSS+G+ +K + + + ++ ++ +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAIEEALKYD--SIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E Sbjct: 244 VVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300 >gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 319 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 173/304 (56%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF-T 117 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G P P ++L N Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLG-PATPLHAVLENENDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E Sbjct: 140 ICAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P S FY Y+ KY + ++ + +P + +++++LA A A Sbjct: 198 TVASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G +R+D + D + FW LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 257 IGIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 VQAR 318 >gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] Length = 288 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 164/289 (56%), Gaps = 8/289 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A AL G + +DV + L +KPD F LHG Sbjct: 3 VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L+LL IPY SG+LASAL+MDK +K++++ G+PV I V R Sbjct: 63 PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +L P V+KP GSS+G+ V++K++ + L L W + LIE+++ G ++T G Sbjct: 123 WNLF--PAVVKPADQGSSIGLHVVEKEEDLTLAL--EEVWKVSQKALIEEFIQGKDVTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D L EI PK Y YE KY+ + +V + P + +++Q +A H + Sbjct: 179 ILKDKPLPPIEIR-PKKGVYDYESKYTKGMTEYVF-VEDP-SVVEKLQEIALKVHTLLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +SR DF + LE+N PGMT +S+FP AG F +++ Sbjct: 236 KDMSRIDFRLSD-DGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMV 283 >gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 304 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 171/307 (55%), Gaps = 23/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSEREVSL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++L + Sbjct: 64 LHGTFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170 D+ + + P +KP GSS+G++ +K+ + L LQ +++ E+ Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229 ++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + D ++ Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRE 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA QAIG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLC 294 Query: 290 LWMVEDA 296 + +++ A Sbjct: 295 IEILKTA 301 >gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57 +A+L GG S ERE+S+ SGKA AL G+ D+ D+ + +L + KPDLAF V Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEILEY-KPDLAFIV 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QAILE L IPYT S + S ++MDK+ +K + + G+P I FT Sbjct: 63 LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIF---FT 119 Query: 118 MDSQHL-ISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + L P P V+K GSS+G+ ++ Q + ++ D++L+E+++ G Sbjct: 120 EEKEALNYRPDFPVVVKAPTEGSSIGVYIVNNQQE--YENAVKEVFDLDDKVLVEKFIKG 177 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++ D D+ E+ V + FY + KY + + ++ PA++ D+YK +Q L Sbjct: 178 RELTVSILDDEVFDIVEVVVSEG-FYDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKV 236 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + C+G +R D + + LE+N PGMT S+ P+ A G +F +L+ +++ Sbjct: 237 YKLLNCKGPARVDIILEN-DNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIK 295 Query: 295 DA 296 ++ Sbjct: 296 NS 297 >gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 318 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 166/294 (56%), Gaps = 10/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA AL+ G IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPT-PRHAVLSSEADC 138 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ P ++KP GSS+G+ + + +D +++S + Q+L+EQ++ G E Sbjct: 139 ISAVAELGLPLIVKPAHEGSSIGMAKVTSASEL-IDAWKAAS-TYDSQVLVEQWIQGPEF 196 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + D L + P + FY Y+ KY + ++ + +P + +E+ L A +A Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +G G +R+D + D ++ FW LE+N PGMT S+ P A AG F++L+L Sbjct: 256 LGIAGWARADVMQD--AQGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307 >gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 308 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 162/299 (54%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL SG A L+ G +D+ ++ +A +AFNV H Sbjct: 7 IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+ + G+PV IL++R T Sbjct: 67 GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D P IKP GGSSLG V K LD ++ D++L E V G E+ Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLG--VSKVGGPAELDAALQCAFAIEDEVLCEGAVIGHEV 184 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++ +L I P++ FY Y KY + ++ ++LP+ + + +++Q LA A Sbjct: 185 TVGILDGQALPPIVIETPRA-FYDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR R DF+ R LE+N PGMT S+ P A G F EL ++ A Sbjct: 244 LGCRDWGRVDFMIGGDGRPHL-LEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301 >gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 306 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S S+ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 306 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG A + L +AG ID+ D V + H + F LH Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKV-FIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116 G GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 64 GRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYA 123 Query: 117 TMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + LI+ P ++KP + GSS+G+ + + ++ L + H D +L+E+ Sbjct: 124 GAEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++GD L I P FY Y+ KY S ++ + P+ + E+ L Sbjct: 182 WLSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAAL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 241 ALRAYRGLDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVA 299 Query: 291 WMVE 294 ++E Sbjct: 300 RILE 303 >gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] Length = 306 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVL+GG S+ERE+SL SG A +AL+ + D VG L L D AF Sbjct: 9 VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFD---PVGQPLEDLLKQGFDRAFIA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG +GEDG VQ LEL+++PYT SGILASAL+MDK R+K + + G+ ++++ + Sbjct: 66 LHGRYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADS 125 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P +IKP + GS++G+ K D + + ++ H ++ EQ++ GI Sbjct: 126 NFQEVTDRLGLPLIIKPAREGSTIGL--NKVDYAQDMQSAYQTAAQHDSLVIAEQFIQGI 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT ++ D L + I V + Y Y+ KY S ++ + P+ + + +Q A AH Sbjct: 184 ELTAAILDDVPLPLVRIDVTEG-LYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAH 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E Sbjct: 243 RILGCTGWSRVDLILDK-NGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILE 300 >gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] Length = 292 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 171/296 (57%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG S E E+S S ++ AL+ G +V ++++ + + L LA PD+AF LHG Sbjct: 3 VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE++ IPYT G+ SA+++DK +K+++ S G+ V I V R Sbjct: 63 SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFR----G 118 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + P P ++KP + GSS+G+ ++K + + ++ + + + LIE++++G E+ Sbjct: 119 QEIPEPAELPCIVKPARVGSSVGLSLVKSQEEFERAVNEALTVDA--KALIEEFIEGREI 176 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T GV+ L EI P + Y YE KYS + +V+PA++ + + RLA A++ Sbjct: 177 TVGVLNGRPLPPVEILTP-GELYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKV 235 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + CRG R DF D + V LEIN PG+T S+ P+ A AG F EL+ M+ Sbjct: 236 LECRGAVRVDFRLDKYNSPVL-LEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290 >gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] Length = 323 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 163/297 (54%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V+ T Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GSS+G+ V+ D+ L + + ++L EQ++ G E Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAYELAA---QYDAEVLCEQFIAGDET 192 Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G A+L V I P+ + Y Y+ KY + + + P+ +P E+QR+ Sbjct: 193 TCPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308 >gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] Length = 337 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S+EREVSL SG AL G D +R +G L F LH Sbjct: 16 VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLG-ELRREGFARCFIALH 74 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 G GEDG VQ LELL IPYT G++AS++SMDK+ +K++ + G+P LV T Sbjct: 75 GRHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEET 134 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + P ++KP + GS++G+ + Q+S ++ ++L EQ+++G E Sbjct: 135 VEALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQASRYD--PEVLCEQFIEGDET 192 Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ + L V I P+ + Y Y+ KY + ++ + P+ +P +E+QRL Sbjct: 193 TCPVLGEGAGAHALPVIRIVAPQGN-YDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQ 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + +GCRG +R+D + RK F LEIN PGMT S+ P A G S+ +L + ++ Sbjct: 252 AFRTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLL 311 Query: 294 EDAS 297 A+ Sbjct: 312 ATAT 315 >gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] Length = 304 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 171/302 (56%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSEREVSL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++L + Sbjct: 64 LHGTFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP GSS+G++ +K+ + + + G +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLK-SVYEEFKHLQG-EIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + D ++ LA Sbjct: 182 EYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ Sbjct: 241 AQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 306 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG S +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54] Length = 316 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 167/307 (54%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P L++ D+ Sbjct: 68 RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLD---ADT 124 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P P +IKP GS++GI + + ++ ++ ++L EQ++ G Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYALAAKFDA--EVLAEQFIQGR 182 Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT ++G +L V EIA P + Y YE KY S ++ + PA +P + +EV +A Sbjct: 183 ELTVAILGGGKSARALPVIEIAAPGGN-YDYEHKYFSDDTQYFCPAALPPAVAEEVADIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R+DF+ D +R + LE+N PGMT S+ P A G S+ EL + Sbjct: 242 VRAYRALGCEGWGRADFMLDADNRP-WLLEMNTSPGMTSHSLVPMAARATGMSYAELCVA 300 Query: 292 MVEDASC 298 ++ DASC Sbjct: 301 ILADASC 307 >gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15] Length = 306 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + S G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 319 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ P+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] Length = 306 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L + D+AFN LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 ++GEDG VQ LE L IPYT G+LASA+ MDK RSK + + +PV P +++ + FT Sbjct: 67 SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L P IKP GSS+G+ IK + + + +++ E+++ G E Sbjct: 127 AVEAQL-GLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEY 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236 TCGV+ + +I +P+++FY YE KY+ ++ ++ P+ IP D + ++ LA A + Sbjct: 186 TCGVIYRKAFPSIKI-IPQNEFYDYEAKYNRDDTIYLCPSDLIPAD-EQLMRDLALKAFE 243 Query: 237 AI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 AI G R DFL D K++ LE N PGMT S+ P+ A AG +F +L + +++ Sbjct: 244 AIGGGNNCGRVDFLRDA-DGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKT 302 Query: 296 A 296 A Sbjct: 303 A 303 >gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] Length = 306 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 17/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID L + F LHG Sbjct: 5 VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + + + Sbjct: 65 RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIE 169 + P ++KP GSS+G+ + +++P LDL ++ + LLIE Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAALDL----AFQFDETLLIE 180 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E T V+GD +L I P FY YE KY S + + P+ + + E+ Sbjct: 181 KWLSGPEFTVAVLGDNTLPPIRIQ-PPGIFYDYEAKYLSDETQYFCPSGLDEQLESELAD 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A+Q +GC G R D + D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 240 LALKAYQVVGCEGWGRVDVMQDS-NGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLV 298 Query: 290 LWMV 293 + ++ Sbjct: 299 VQIL 302 >gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] Length = 304 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 23/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSEREVSL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++L + Sbjct: 64 LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170 D+ + + P +KP GSS+G++ +K+ + L LQ +++ E+ Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 ++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRE 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA QAIG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLC 294 Query: 290 LWMVEDA 296 + +++ A Sbjct: 295 IEILKTA 301 >gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 287 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 165/297 (55%), Gaps = 19/297 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV MGG SSE+E+SL SG+A +L+ + + +D V A L D LA+ VL Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEK-NQVTAFLDNDYDLAYLVL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ + Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAYRT----- 116 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS G+ + + + + +IE Y+ G ELT Sbjct: 117 -VEEIEKFPVIIKPVDEGSSKGVFLCNNREE------AEKAVKKIVRPIIEDYIVGEELT 169 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 GV+ +L V +I +P++D Y Y+ KY+ S H PAKI YKE ++A H Sbjct: 170 VGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSE 228 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 229 FGMKGTSRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283 >gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] Length = 303 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 11/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R ++ Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S +I+ P +KP GSS+G+ +K +Q IP + +L+E+ + G Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIP---AIEEALKFDSIVLVEENLAGA 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 185 EYSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E Sbjct: 243 DVVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300 >gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6] Length = 288 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 8/289 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A A+ + G + +D++ ++ L +KPD F LHG Sbjct: 3 VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPYT SG+L S L+MDK +K++++ +PV I V R Sbjct: 63 TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H S P V+KP GSS+G+ ++K + + + S +H ++LIE+Y+ G ++T G Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI PK Y YE KY+ S +V L K++Q +A + H+ + Sbjct: 179 ILKGEALPPVEIK-PKKGIYDYESKYTKGMSDYVFLEDEKL--IKKLQDIALMVHKYLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ISR DF + LE N PGMT +S+FP M G F+E++ Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMI 283 >gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 280 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 9/280 (3%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 A AL G+ V +IDV + V L K D+A+ LHG +GEDG +Q +LE L IPYT S Sbjct: 2 AKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTGS 61 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSS 138 G+LASA+ MDK+ +K + ++ G+P P T + S P V+KP + GSS Sbjct: 62 GVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGSS 121 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ V K ++ L ++ ++ + LL+EQ++ G E+ V+ D +L V E+ V + + Sbjct: 122 VGVHVCKTKEAY-LAAVEDAA-RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAR-E 178 Query: 199 FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY + KY+S + T ++ PA +P D Y+ V + AH+A+GC+G SRSD + V Sbjct: 179 FYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGDV 237 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F LE N PGMT S+ P++AA G F L +++ AS Sbjct: 238 FVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277 >gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966] gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 str. EDL933] gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai] gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC1212] gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125] gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044] Length = 306 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSVRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] Length = 308 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 5/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG ++ERE+SL SG+A AL+ G V ID D ++ L D AF +LHG Sbjct: 15 VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119 GEDG +Q LE + +PYT SG+L SAL MDK R K + CG+P +L+ + + Sbjct: 75 RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS+G+ ++ + + ++ ++ +L E+++ G+ELTC Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERAWRAAAEFD--SLVLAERWIQGMELTC 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++G +L + P + FY YE KYS+ ++ + P+ + ++ ++ LA A +G Sbjct: 193 AILGHEALPTIRLETPHA-FYDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G R D + D + F LEIN PGMT S+ P A AG F +L+ ++E Sbjct: 252 ASGWGRVDMMLDGTGQP-FLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILE 305 >gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] Length = 303 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ERE+SL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R ++ Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S +I+ P +KP GSS+G+ +K + + + ++ ++ +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAIEEALKYD--SIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E Sbjct: 244 VVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300 >gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14] Length = 306 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSYG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 306 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1] gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989] gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9] gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9] gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989] gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1] gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9] Length = 306 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J] gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J] Length = 331 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIPADVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ASAS 319 >gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] Length = 306 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAVLGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 171/307 (55%), Gaps = 23/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSEREVSL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++L + Sbjct: 64 LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170 D+ + + P +KP GSS+G++ +K+ + L LQ +++ E+ Sbjct: 124 DFDAVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 ++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRE 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA QAIG G SR DFL D + K++ LEIN PGMT S+ P+ A + G F +L Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-MDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLC 294 Query: 290 LWMVEDA 296 + +++ A Sbjct: 295 IEILKTA 301 >gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] Length = 312 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 21/310 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK--VSQIDVDRSVGLVLAHLKPDLAFNVL 58 +AV++GG S+E VS +SGK A+AL G+ ++++ V L + D+ FN L Sbjct: 9 IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITEL-VPEEWARTLKEGQFDIVFNAL 67 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG++Q E++ IPYT G++ASA+ M+K+ SK G+ P R+ Sbjct: 68 HGRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPF----RYYF 123 Query: 119 DSQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + Q + S P VIK GSS+G ++++K + L S ++ +G ++ Sbjct: 124 EEQGVDSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSAL--SEAFAYGKSIVA 181 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E ++ G E T VM + + V EI + K+ Y YE KY+ S H+ PA+IP ++ KE+Q Sbjct: 182 EAFLSGREFTVAVMDELAFPVIEI-ISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQ 240 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L+ + C+G++R D + D + K + LEIN PGMT S+ P+ + G F +L Sbjct: 241 DLSLAVFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDL 299 Query: 289 LLWMVEDASC 298 ++E+AS Sbjct: 300 CERILEEAST 309 >gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] Length = 306 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39] gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39] Length = 306 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] Length = 306 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 319 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ P+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 319 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + + ++ LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] Length = 323 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 162/297 (54%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V T Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GSS+G+ V+ D+ L + + ++L EQ++ G E Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA---QYDAEVLCEQFIAGDET 192 Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G A+L V I P+ + Y Y+ KY + + + P+ +P E+QR+ Sbjct: 193 TCPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308 >gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5] gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5] Length = 306 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ Q L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032] gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032] Length = 326 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L+ AG +D L D F LHG Sbjct: 25 IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q LE L +PYT SG++ASA++MDK+R+K + G+PV P + + R + Sbjct: 85 RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144 Query: 120 --SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169 S+ L + P ++KP + GSS+G+ + Q++ L+L ++ H ++L+E Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPALEL----AFEHDSEVLVE 200 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E T ++GD L I P FY YE KY S + + PA I + +Q Sbjct: 201 KWLSGPEFTVAILGDDILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQA 259 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 260 LVLEAWRVLGCRGWGRVDVMQDS-DGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLV 318 Query: 290 LWMVEDAS 297 + ++E A+ Sbjct: 319 VRILELAN 326 >gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a] gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a] gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82] gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2] Length = 306 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] Length = 316 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 165/307 (53%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG +ASAL+MDK +K++ G+P P V D+ Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPT-PEFEV--LDADT 124 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P P +IKP GS++GI + + ++ ++ +L EQ++ G Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARFD--SVVLAEQFIIGR 182 Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V+G +L V EIA P + Y YE KY S ++ PA +P + +EV +A Sbjct: 183 ELTVAVLGSGKGARALPVIEIAAPGGN-YDYEHKYFSDDTQFFCPATLPDGVAEEVAEIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R+DF+ D +R + LE+N PGMT S+ P A G S+ +L + Sbjct: 242 VKAYQALGCEGWGRADFILDRDNRP-WLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVS 300 Query: 292 MVEDASC 298 ++ +ASC Sbjct: 301 ILSEASC 307 >gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197] gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197] Length = 306 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046] gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS] gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11] gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026] gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B] gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412] gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354] gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736] gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine Ligase At 2.3 Angstroms Resolution gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli] gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli] gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr. W3110] gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046] gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS] gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11] gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026] gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042] gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412] gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354] gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407] gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W] gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1] gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431] gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B] gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010] gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G] gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68] gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180] gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357] gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88] Length = 306 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327] Length = 306 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] Length = 313 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 170/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV L K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPT-PRHAVLTSQADC 133 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ ++ +++ ++ ++ Q+L+EQ++ G E Sbjct: 134 KAAATELGFPLIVKPAHEGSSIGMAKVESVEALVAAWQDAARYD--SQVLVEQWIAGPEY 191 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P + FY Y+ KY + ++ + +P + + E++ L A +A Sbjct: 192 TIAVLRGEVLPPIGLGTPHT-FYDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEA 250 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 251 VGTQGWARADVMQDASGQ--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADS 308 >gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] Length = 306 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 165/306 (53%), Gaps = 19/306 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 SQ L P ++KP + GSS+G+ + + ++ D L+ ++ H +++LI Sbjct: 125 GLNDKQLAEISSQGL---PVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLI 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T ++G+ L I P FY YE KY S + + PA + +Q Sbjct: 180 EKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L Sbjct: 239 ALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Query: 289 LLWMVE 294 ++ ++E Sbjct: 298 VVRILE 303 >gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 318 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115 + G EDG+VQ ++E ++PYT S +L SALSMDK+R+KQV S G+ C + L Sbjct: 79 HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGL--CTPRYARLAAG 136 Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + D H I P ++KP GSS+GI + + ++ ++ ++ LL+EQ Sbjct: 137 ASADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQL 194 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ++G ELT V+G+ +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 195 IEGDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLA 252 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A G RG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W Sbjct: 253 LDAFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVW 311 Query: 292 MV 293 V Sbjct: 312 RV 313 >gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_05] gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_10] gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] Length = 306 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89] gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1] gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88] gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89] gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1] gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88] gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034] gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146] gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263] Length = 306 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTIAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v] Length = 306 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 303 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/293 (35%), Positives = 162/293 (55%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG SAL G D L D FN+LHG Sbjct: 7 VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 FGEDG +Q LE L +PYT G++ASA++MDK R+K + G+P+ L++ + D Sbjct: 67 PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGIEL 177 + + + P +KP GSS+G+ +K+ + ++ + D+++I EQ++ G E Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAFEEARKY---DKVVIAEQFIGGGEY 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+G+ + +I P +++Y Y+ KY ++ + P+ + ++ + LA A + Sbjct: 184 TCAVIGETAYPTIKIE-PATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKV 242 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +GCRG SR DFL D + +++ LE N PGMT S+ P A G ++ +L L Sbjct: 243 LGCRGWSRVDFLMDE-AGEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCL 294 >gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227] gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94] gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227] gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94] gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74] Length = 306 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A] gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A] Length = 306 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] Length = 316 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 167/307 (54%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P L++ D+ Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLD---ADT 124 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P P +IKP GS++GI + + ++ ++ ++L EQ++ G Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARFDA--EVLAEQFITGR 182 Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V+G +L V EIA P + Y YE KY S ++ + PA +P ++ EV +A Sbjct: 183 ELTVAVLGGGKTARALPVIEIAAPGGN-YDYEHKYFSDDTQYFCPATLPPEVAAEVAEIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R+DF+ D +R + LE+N PGMT S+ P A G S+ +L + Sbjct: 242 VQAYQALGCEGWGRADFILDRDNRP-WLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVA 300 Query: 292 MVEDASC 298 ++ +A+C Sbjct: 301 ILSEAAC 307 >gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae] Length = 300 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 170/302 (56%), Gaps = 15/302 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L+GG S+EREVSL SG A + L DAG +D+ + L + F LHG Sbjct: 1 MLLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRG 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120 GEDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ + G+P+ P I +++ M S Sbjct: 61 GEDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMS 120 Query: 121 QHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + L ++ + +LIE++++ Sbjct: 121 DEMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELRIAL--EFAFRYDKDVLIEKWLN 178 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++G+ L I P FY Y+ KY S + + P+ + + +++ +LA Sbjct: 179 GPEYTVAIVGEQVLPSIRIQ-PVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALA 237 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++A+GC G R D + D + VF+ LEIN PGMT S+ P A AG +F +L+ + Sbjct: 238 AYKAVGCAGWGRVDVMRD--NDGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKI 295 Query: 293 VE 294 +E Sbjct: 296 LE 297 >gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 288 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 165/289 (57%), Gaps = 8/289 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +G+A + AL+D G +V ++D+ + L +KPD F LHG Sbjct: 3 IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L++L IPYT +G+L SA++MDK +K+++SS G+P P V R + Sbjct: 63 PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRG--EE 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P V+KP GSS+G+ V+ + L + D++L+E +++G ++T Sbjct: 121 PVWRDFPAVVKPADQGSSVGLSVVHSEAE--LGKAVKELFELTDKVLVESFIEGRDMTVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI P Y YE KY+ + + + L + +Q A ++ +G Sbjct: 179 ILKGKALPVIEIK-PIKGIYDYESKYTRGKTEYTFLEEGELS--ERLQDTALRVNELLGL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++R DF D + LE+N PGMT +S+FP AG SF+E+L Sbjct: 236 KDMARVDFRVDGEGNP-YVLEVNTVPGMTELSLFPMACEKAGMSFKEML 283 >gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9] gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum SS9] Length = 308 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 173/303 (57%), Gaps = 14/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ A+E G + ID ++ K D F LHG Sbjct: 7 IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ Sbjct: 67 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126 Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVD 173 D + +S P V+KP+ G S+G+ + + DLL++ +++ + D +LIE ++ Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNA----DLLEAVITAFEYDDDILIESFIA 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E TC V+ L + +I + F+ Y+ K+ S ++T+ P+ + + +++Q LA Sbjct: 183 GREYTCAVLNGKPLPIVQIRSEQ--FFDYDAKFGSQSATYHCPSDLTSEQERDMQALALN 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ A+GCRG R D + D S VF +E+N PGMT S+FP A AG SF +++ ++ Sbjct: 241 AYNALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLL 299 Query: 294 EDA 296 + A Sbjct: 300 DSA 302 >gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74] Length = 306 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 319 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ P+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 306 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+ V P + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L + ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGAL--ALAFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC+G R D + + + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCKGWGRIDVMLNS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 319 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] Length = 332 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 23/310 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG S+EREVSL SG AL G D S L+ LK F Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSD---LSELKAHGYSRCFIA 72 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P LV+ Sbjct: 73 LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSA 132 Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q + P ++KP + GS++G+ + +Q+ L + H ++L EQ+ Sbjct: 133 ETAQAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQF 186 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +DG E TC ++G + L V I P+ + Y Y+ KY + + + P+ +P +E+ Sbjct: 187 IDGDETTCPILGQGTEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREI 245 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 QR+ A++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ + Sbjct: 246 QRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPD 305 Query: 288 LLLWMVEDAS 297 L L ++ AS Sbjct: 306 LCLRILASAS 315 >gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 318 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 165/304 (54%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPT-PRHAVLASEEDC 138 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ + ++ + ++ ++ Q+L+EQ++ G E Sbjct: 139 VVAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAAWQDAAKYD--SQVLVEQWIHGPEF 196 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P FY Y+ KY + ++ + +P + +E+ L A A Sbjct: 197 TIAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 256 IGIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 313 Query: 297 SCLR 300 R Sbjct: 314 VATR 317 >gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 318 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + I P ++KP GSS+G+ + + + ++ ++ LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-ETLVWRV 313 >gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 318 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ ++ LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCPG-LEGDAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDF-ETLVWRV 313 >gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica] Length = 306 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L++AG ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115 GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+ G+ V P + +N + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124 Query: 116 FT--MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 FT +H+ + P ++KP GSS+G+ + + + L ++ + LLIE++ Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EIAFRYDADLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD +L I P + FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LYGPEYTVAILGDTALPSIRIQ-PAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++++GC G R D + D S VF+ LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAYKSVGCCGWGRVDIMMD--SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVV 299 Query: 291 WMVE 294 ++E Sbjct: 300 KILE 303 >gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 319 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 318 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ ++ LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCPG-LEGDAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDF-ETLVWRV 313 >gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 165/286 (57%), Gaps = 14/286 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLV-LAHLKPDLAFNVL 58 +AVL GG S+ERE+SL+SGK AL++AG+ V ID +V +A D+AF + Sbjct: 11 VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117 HG GEDG +Q +E L IPYT SG+LASA DK SK + + G+P+ P + + Sbjct: 71 HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130 Query: 118 MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D H++ +KP GSS GI ++ + +P + + ++ +GD++L+E+ ++G Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAI--AKAFAYGDKVLVEKCIEG 188 Query: 175 IELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T GV G+ +L + EI P+ +FY ++KY H +PA+I + Y Q L Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A AH+A+GC GISRSDF+ LE N PGMT S++P+ Sbjct: 249 ACAAHKALGCLGISRSDFIVS--EDGPVILETNTIPGMTDTSLYPD 292 >gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] Length = 315 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL+ AG IDV + L + D AF VLHG Sbjct: 17 VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV S G+P P V D Sbjct: 77 RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPT-PRHAVPTSESDC 135 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ + + L + S H Q+L+EQ++ G E Sbjct: 136 RAAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAAWLSARS--HDPQVLVEQWIQGPEF 193 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ L + P S FY Y+ KY + ++ + +P + +E++ L A +A Sbjct: 194 TVALLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEA 252 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G +R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 253 VGVQGWARVDVMQDAEGR--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADS 310 >gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] Length = 323 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVS+ SG AL G D + L F VLHG Sbjct: 12 VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P P + F S Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPT-PKYVRLAFDQQS 130 Query: 121 --QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q ++ P P ++KP + GSS+G+ ++ + + S+ ++ +L E++++ Sbjct: 131 REQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSAKYDA--DVLCEEFIE 188 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+TC V+G +L V IA P+ Y Y+ KY + + P+ +P D E+QR Sbjct: 189 GEEVTCAVLGQGLDARALPVVRIAAPEG-AYDYQNKYFTDVVQYKCPSGLPADEEHEIQR 247 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + A+ +GCRG R+D + RK F LE+N PGMT S+ P A AG + EL Sbjct: 248 ITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELC 307 Query: 290 LWMVEDAS 297 L ++ AS Sbjct: 308 LRVLASAS 315 >gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905] Length = 306 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] Length = 304 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + LA LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETP---LAELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV P V Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHED 122 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLI 168 + F Q L P +V KP GSS+G++ +K+ + L LQ +++ Sbjct: 123 SDFDAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIA 174 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + Sbjct: 175 ERFIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLM 233 Query: 229 R-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 R LA QAIG G R DFL D K++ LEIN PGMT S+ P+ AA+ G F + Sbjct: 234 RSLAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFAD 292 Query: 288 LLLWMVEDA 296 L + +++ A Sbjct: 293 LCIEILKTA 301 >gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY] gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY] Length = 332 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 23/310 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG S+EREVSL SG AL G D S L+ LK F Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSD---LSELKAHGYSRCFIA 72 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P LV+ Sbjct: 73 LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSA 132 Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q + P ++KP + GS++G+ + +Q+ L + H ++L EQ+ Sbjct: 133 ETAQAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQF 186 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +DG E TC ++G + L V I P+ + Y Y+ KY + + + P+ +P +E+ Sbjct: 187 IDGDETTCPILGQGAEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREI 245 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 QR+ A++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ + Sbjct: 246 QRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPD 305 Query: 288 LLLWMVEDAS 297 L L ++ AS Sbjct: 306 LCLRILASAS 315 >gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073] gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073] gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972] gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1] Length = 306 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE K+ S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536] gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536] gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1] Length = 306 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 319 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061] gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus nematophila ATCC 19061] Length = 306 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT- 117 GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+ +PV P + +N +F Sbjct: 65 RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D + P ++KP GSS+G+ K + L + ++ + +L+E++ Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGM--TKVNDYAELRGALALAFKYDTDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G +GD +L I P FY Y+ KY S + + P+ + ++ +E+ +A Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDV-FYDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GCRG R D + D + LE N PGMT S+ P A AG+SF +L++ Sbjct: 242 SEAYKALGCRGWGRVDIM-DDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] Length = 306 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] Length = 346 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 17/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVLMGG S+EREVSL SG+ AL G D +R LA LK + F Sbjct: 29 VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERD----LAELKVEGFSHCFI 84 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ LELL IPYT SG++AS++++DK+ +K++ S G+P V+ Sbjct: 85 ALHGRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSA 144 Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S+ + P ++KP + GS++G+ + + + + + H +L EQ+V G Sbjct: 145 AATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQC--GAAYALAARHDAMVLCEQFVKG 202 Query: 175 IELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T ++G + L V I P + Y Y+ KY + + +++PA +P +Q+L Sbjct: 203 DEVTIPLLGSGAGAHALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPANLPAGEEAHIQQL 261 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+Q +GCRG +R D + D +R F LEIN PGMTP S+ P A AG S+ L L Sbjct: 262 ALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCL 321 Query: 291 WMVEDAS 297 ++ A+ Sbjct: 322 EVLRHAT 328 >gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] Length = 323 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 161/297 (54%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V T Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GSS+G+ V+ D+ L + + ++L EQ++ G E Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA---QYDAEVLCEQFIAGDET 192 Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G + L V I P+ + Y Y+ KY + + + P+ +P E+QR+ Sbjct: 193 TCPVLGTGAQAGALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308 >gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 319 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str. 306] Length = 318 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + I P ++KP GSS+G+ + + + ++ ++ LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIADDTQYLCPG-LEGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-ETLVWRV 313 >gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 308 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG SSEREVSL+SG+A AL G D + L LK D AFN+ Sbjct: 12 VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETP---LGELKTQGFDCAFNI 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ LE L I YT G+LAS++ MDK RSK + G+PV P V R Sbjct: 69 LHGVFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPV-PDYAVLRDD 127 Query: 118 MD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + P +KP GSS+G++ +K ++ L + +++ E ++ G Sbjct: 128 SDFDAVERQLGLPMFVKPANEGSSVGVVKVK--EAGRLKEVYHELKQFRGEIIAEAFIGG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E TCG++ +L I +P ++FY E KY ++ ++ P+ + + + ++ L A Sbjct: 186 GEYTCGILNGRALPSVRI-IPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG R DFL D S +++ LE N PGMT S+ P+ AA G+ F +L + +++ Sbjct: 245 FHAIGGRGWGRIDFLKDE-SGRLYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILK 303 Query: 295 DA 296 A Sbjct: 304 TA 305 >gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1] Length = 318 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ ++ Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314 Query: 298 CLR 300 R Sbjct: 315 ATR 317 >gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 306 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R + + L +L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDIDITQLKNLGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R FT Sbjct: 64 GRGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +IKP + GSS+G+ + + +P L + ++ H D++L+E+ Sbjct: 124 AGLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSAL--ALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P ++Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESDIQSL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 319 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6] Length = 306 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] Length = 304 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 25/308 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSEREVSL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV P +V Sbjct: 64 LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPV-PEFVVLHDD 122 Query: 118 MD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIE 169 D + + P +KP GSS+G++ +K+ + L LQ +++ E Sbjct: 123 SDFDAVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAE 175 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R Sbjct: 176 RFIGGGEYSCPVLNGKGLPSIHI-IPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMR 234 Query: 230 -LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA QAIG G SR DFL D K++ LEIN PGMT S+ P+ A + G F +L Sbjct: 235 ELAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADL 293 Query: 289 LLWMVEDA 296 + +++ A Sbjct: 294 CIEILKTA 301 >gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] Length = 319 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 166/306 (54%), Gaps = 21/306 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L + AFN+LHG Sbjct: 22 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV P V + F Sbjct: 82 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHEDSDF 140 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQY 171 Q L P +V KP GSS+G++ +K+ + L LQ +++ E++ Sbjct: 141 DAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERF 192 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-L 230 + G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R L Sbjct: 193 IGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRAL 251 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + Sbjct: 252 AVRGAQAIGAEGCVRVDFLRD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCI 310 Query: 291 WMVEDA 296 +++ A Sbjct: 311 EILKTA 316 >gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227] Length = 309 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 25/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP---DLA 54 +AVL+GG S+EREVSL+SG A + L + G + V DVD +A LK Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVD------VAQLKSMGFQKV 61 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + Sbjct: 62 FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAIT 121 Query: 115 RFTMD---SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R + S ++ P ++KP + GSS+G+ + + S+ L ++ H D+ Sbjct: 122 RTEFEKGLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDE 179 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+E+++ G E T ++G+ L I P FY YE KY S + + P+ + + Sbjct: 180 VLVEKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQES 238 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ L A +GC+G R D + D + + LE N PGMT S+ P A AG SF Sbjct: 239 ILKSLVQKAWTTLGCKGWGRIDVMLDD-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 297 Query: 286 RELLLWMVE 294 +L++ ++E Sbjct: 298 SQLVVRILE 306 >gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 319 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301] gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401] gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301] gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401] gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017] gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T] gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70] gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71] gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671] gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71] gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218] gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272] gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227] gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304] Length = 306 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] Length = 304 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + LA LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETP---LAELKTQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV P V Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHED 122 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLI 168 + F Q L P +V KP GSS+G++ +K+ + L LQ +++ Sbjct: 123 SDFDAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIA 174 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + Sbjct: 175 ERFIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLM 233 Query: 229 R-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 R LA QAIG G R DFL D K++ LEIN PGMT S+ P+ AA+ G F + Sbjct: 234 RALAVRGAQAIGADGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFAD 292 Query: 288 LLLWMVEDA 296 L + +++ A Sbjct: 293 LCIEILKTA 301 >gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 307 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 167/292 (57%), Gaps = 8/292 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SGKA SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307 >gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 306 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 25/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP---DLA 54 +AVL+GG S+EREVSL+SG A + L + G + V DVD +A LK Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVD------VAQLKSMGFQKV 58 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + Sbjct: 59 FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAIT 118 Query: 115 RFTMD---SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R + S ++ P ++KP + GSS+G+ + + S+ L ++ H D+ Sbjct: 119 RTEFEKGLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDE 176 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+E+++ G E T ++G+ L I P FY YE KY S + + P+ + + Sbjct: 177 VLVEKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQES 235 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ L A +GC+G R D + D + + LE N PGMT S+ P A AG SF Sbjct: 236 ILKSLVQKAWTTLGCKGWGRIDVMLDD-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 Query: 286 RELLLWMVE 294 +L++ ++E Sbjct: 295 SQLVVRILE 303 >gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007] Length = 306 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P +++ R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 312 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E E+S +G A AL+ G+ ++++ + + + FN LH Sbjct: 6 IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG++Q L++L IPYT SG+LA+A++MDK SK+V + G+ S R+ M Sbjct: 66 GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + S P V+K GSS+G+ +++ ++ L ++ S+N D++L+E+++ Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYN--DEVLVEEFIR 183 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ + + EI S Y YE KY+ STH++PA++ + KE+Q Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITT-TSGRYDYESKYTKGASTHIIPARVSAEKTKEIQD 242 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A GC+G++R D + + +E+N PGMT +S+ P+ G F EL Sbjct: 243 LAIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELC 301 Query: 290 LWMVEDA 296 ++E A Sbjct: 302 ERILEMA 308 >gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 306 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 163/299 (54%), Gaps = 13/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L +AG +D +L AF LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL IPYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124 Query: 119 -----DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 DSQ + + P ++KP + GSS+G+ K +S LD + ++ H D++LIE++ Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGM--SKVSESRALDAALALAFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L I P FY YE KY S + + P +E++ L Sbjct: 183 LSGPEFTVAVVGEEILPSIRIQ-PAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC G R D + D +++ LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] Length = 310 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 162/296 (54%), Gaps = 12/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57 +AVL GG SSERE+SL G+A +AL AG +D +R L H AF + Sbjct: 10 VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFS--RAFVM 67 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114 LHG GEDG +QAIL+ L IPYT S +LA AL+MDK+ K+V S G+PV +LV + Sbjct: 68 LHGRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPES 127 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 RF + L +VIKP GSS+G+ +K + + + + +++ E ++ G Sbjct: 128 RFETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARA--KIMAEPWIVG 185 Query: 175 IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT G++ D L EI A DFY Y+ KY + N+ ++ PA I + + +AF Sbjct: 186 RELTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFA 245 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A QAIG RG R D + D +R + LEIN+ PGMT S+ P A G F L+ Sbjct: 246 AFQAIGARGWGRVDMIVDAQNRP-YLLEINLVPGMTTHSLVPMAAQQIGMDFSALV 300 >gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 776 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ P S T Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589 Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 I S P V+K + GSS+G+ ++ ++ + L ++++G ++L+E+++ Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSL--DEAFSYGGEVLVEEFIA 647 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ +L V EI S Y YE KY+ S H++PA I + EVQ Sbjct: 648 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 706 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 707 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 765 Query: 290 LWMVEDASCLR 300 ++E A R Sbjct: 766 EKILEMAGYQR 776 >gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440] gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440] Length = 318 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ ++ Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314 Query: 298 CLR 300 R Sbjct: 315 ATR 317 >gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 161/294 (54%), Gaps = 10/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P P V D Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPT-PRHAVLASEADC 138 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GSS+G+ + + +SS++ Q+L+EQ++ G E Sbjct: 139 ISAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAAWKDASSYD--SQVLVEQWITGPEF 196 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + D L + P + FY Y+ KY + ++ + +P + KE+ L A +A Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +G G R+D + D + FW LE+N PGMT S+ P A AG F++L++ Sbjct: 256 LGIAGWGRADVMQDADGQ--FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVV 307 >gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 318 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 168/300 (56%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + + P ++KP GSS+G+ + DQ+ D + ++ G LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313 >gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 318 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 168/300 (56%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + + P ++KP GSS+G+ + DQ+ D + ++ G LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313 >gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] Length = 318 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ ++ Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314 Query: 298 CLR 300 R Sbjct: 315 ATR 317 >gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] Length = 301 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ + ++V I +D+ ++ D A LHG Sbjct: 3 IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK V+ + G+ P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P V+KP GGSS+ ++K+++ I + ++ W+ +++IE+++ G E+ Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIENCVSEAFKWDS--EVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + L V I PK++F+ + KY + ++ ++ +++KEV+++A ++A Sbjct: 181 TCPVYNNKMLPVIAIK-PKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LEIN PGMT S+ P+ AA F EL+ +++D+ Sbjct: 239 LKCEVYSRVDMIVTEEGVP-YILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296 >gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] Length = 298 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 14/292 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG+SSER+VS+ +G +AL GFK S +DVD S+ L KPD + LH Sbjct: 6 IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE + IPY G+ ASA+S DK+ +K+++ S +P + F Sbjct: 66 GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTA-----DYFEYK 120 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ SP P V+KP + GS++G+ ++ +D+ + + +++ ++++E+++ G EL Sbjct: 121 NEQS-SPFYPCVVKPAREGSTIGVTIVYEDKEFIPAIEDAKKYDN--KIIVERFIKGKEL 177 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D L + I PK FY Y KY+ + ++ + + V+++A A++ Sbjct: 178 TISIIDDLVLPIIWIK-PKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEV 236 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC G SR D ++D V LEIN PGMT S+ P AA G ++ EL+ Sbjct: 237 VGCEGASRVDIIYDGDIPNV--LEINTLPGMTETSLLPNAAAKYGIAYDELV 286 >gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 318 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117 + G EDG+VQ ++E IPYT S +L SALSMDK+R+KQV S G+P + L + Sbjct: 79 HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138 Query: 118 MDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D H I P ++KP GSS+GI + + +L ++ ++ LL+EQ ++ Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++G+ +L I VPK +Y Y KY + ++ ++ P + D ++ +LA Sbjct: 197 GDELTVAILGETALPSIRI-VPKGQWYDYNAKYLADDTQYLCPG-LDGDAEAQIGQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A G R R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEE-LVWRV 313 >gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82] Length = 306 Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895] Length = 306 Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + D+ IS P ++KP + GSS+G+ + ++ ++ + ++ H +++LIE++ Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGMSKVVEENAL--QAALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N] gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N] Length = 317 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D L + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LELL IPYT SG+ ASAL+MDK+ +K+V G+P P+ D+ Sbjct: 68 RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPT-PAF--EEIDSDT 124 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQ-LLIEQYVD 173 + P P ++KP GS++GI + + D+ Q+ ++ +H D+ +L EQ+V Sbjct: 125 ELRRVPDRLGLPLILKPPHEGSTVGITKV----AACADMEQAYAAASHFDEVVLAEQFVR 180 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT ++G +L V EI P + Y Y+ KY + + + PA +P+ + +++++ Sbjct: 181 GRELTVALLGSGRNARALPVIEIVAPDGN-YDYQNKYFTDVTQYFCPADLPVGVAEQIEK 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A++A+GC G R+DF+ D ++ + LE+N PGMT S+ P A G S+ EL Sbjct: 240 IAVQAYRALGCEGWGRADFILDGQNQP-WLLEMNTSPGMTSHSLVPMAARAVGMSYAELC 298 Query: 290 LWMVEDASC 298 + ++ DASC Sbjct: 299 VAILADASC 307 >gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T] Length = 306 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R Sbjct: 65 PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans] gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans] Length = 334 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 165/307 (53%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVSL SGK +AL+ G D +RS+ LA K D F LH Sbjct: 15 VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLA-ELAAEKFDRVFIALH 73 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG +Q LE L IPYT G++ASA+SMDK+ +K+V S GVP +++ T Sbjct: 74 GSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTS 133 Query: 120 SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + L S P ++K GS++GI ++ + + + + +L+EQ+V Sbjct: 134 AAQLQSVAAEFGLPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYEA--VVLVEQFVK 191 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V+G +L + EI P+ + Y YE KY S ++ ++ PA K VQ Sbjct: 192 GRELTVPVIGSGRNARALPIVEIRAPQGN-YDYEHKYFSNDTEYLCPAPFDEAFTKRVQA 250 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A+GC G SR DF+ + F LEIN PGMT S+ P A AG + +L Sbjct: 251 LAVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLC 310 Query: 290 LWMVEDA 296 + ++ A Sbjct: 311 IEILRSA 317 >gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945] gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18] gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140] gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19] gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11] gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1] gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1] gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332] gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945] gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 304 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 17/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + D Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173 + + + P +KP GSS+G++ +K+ + L LQ +++ E+++ Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232 G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 180 GGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAV 238 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + + Sbjct: 239 RGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEI 297 Query: 293 VEDA 296 ++ A Sbjct: 298 LKAA 301 >gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 319 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18] gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035] gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2] gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] Length = 304 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + D Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + G +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLK-SIYEELKHLQG-EIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301 >gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] Length = 315 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 18/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+ AL G D R + L + D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 +GEDG +Q LEL+ +PYT SG LAS+L+MDK+ +KQV G+P P + R D Sbjct: 68 RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPT-PRYAILRPDTDL 126 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDG 174 ++ P +IKP GS+LG+ + LD L+ + + + +L EQ++ G Sbjct: 127 ASVAAVLDLPLIIKPPHEGSTLGVTKVDG-----LDSLREAYQLAARYDADVLAEQFIVG 181 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT ++G +L V EI P + Y YE KY S ++ ++ PAK+ + ++++ Sbjct: 182 RELTVALLGGGGSARALPVIEIVAPDGN-YDYEHKYISNDTQYICPAKLDDALSASIRQI 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ A+GC G R+DF+ D + K + LEIN PGMT S+ P A G S+ EL L Sbjct: 241 AEQAYVALGCEGWGRADFMLDE-AGKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCL 299 Query: 291 WMVEDASC 298 ++ ASC Sbjct: 300 EILSTASC 307 >gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] Length = 317 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG+ AL G +D ++ LA K D FN+LHG Sbjct: 20 VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV S +P + ++R + Sbjct: 80 GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139 Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++KP GSS+G+ + + LD + + + ++L+EQ V G Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDG--LDEAIALAARYPGEMLMEQMVVGD 197 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT GV+GD +L I VP+ ++Y Y KY + ++ ++ P D + V+ LA A Sbjct: 198 ELTVGVLGDIALPSIRI-VPRGEWYDYNAKYIAEDTQYLCPGLEGEDELR-VRELALAAF 255 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A GC G R D + + + LE+N PGMT S+ P+ AA G F EL ++E Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILE 314 >gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] Length = 318 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ ++ LL+EQ ++ Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEAETQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313 >gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D] gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D] Length = 331 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++G+ +L + I P+++ Y Y+ KY + ++ + PA I +D+ VQ L Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ASAS 319 >gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] Length = 318 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 166/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + + ++ ++ Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAAWQDAAQYD--SQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A A+ Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G R D + D R FW LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314 Query: 298 CLR 300 R Sbjct: 315 ATR 317 >gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] Length = 343 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 21/306 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV P V + F Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHEDSDF 164 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQY 171 Q L P +V KP GSS+G++ +K+ + L LQ +++ E++ Sbjct: 165 DAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERF 216 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-L 230 + G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R L Sbjct: 217 IGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMREL 275 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + Sbjct: 276 AVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCI 334 Query: 291 WMVEDA 296 +++ A Sbjct: 335 EILKTA 340 >gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606] gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50] gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)] gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489] Length = 306 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] Length = 306 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 165/306 (53%), Gaps = 19/306 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124 Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168 S+ L++ P ++KP + GSS+G+ + + D LQS+ ++ H +++LI Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAE-----YDALQSALALAFQHDEEVLI 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T ++G+ L I P FY YE KY S + + PA + ++ Sbjct: 180 EKWLSGPEFTVAILGEEILPTIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLETAQEALLR 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L A +GC+G R D + D + + LE N PGMT S+ P A G SF +L Sbjct: 239 DLVRKAWSTLGCKGWGRIDAMLDS-DGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQL 297 Query: 289 LLWMVE 294 ++ ++E Sbjct: 298 VVRILE 303 >gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520] Length = 306 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] Length = 306 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R + + L +L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDIDITQLKNLGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R FT Sbjct: 64 GRGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123 Query: 118 MD-----SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + + P +IKP + GSS+G+ K +S L + ++ H D++L+E+ Sbjct: 124 AGLSAAVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLQSALALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P ++Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESDIQSL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] Length = 303 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +K GSS+G+ +K + + + ++ ++ +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKFD--SIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D K +E+N PGMT SIFP+ AA G SF +L+ ++E Sbjct: 244 VVGCRGWSRIDVMEDG-EGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLE 300 >gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] Length = 303 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 163/294 (55%), Gaps = 12/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLV-LAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA AL+ G+ D V+R L + KPDLAF L Sbjct: 5 IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117 HG GEDG +Q++LE L IPYT S S + MDK+ +K + + S +N Sbjct: 65 HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLN--- 121 Query: 118 MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ P P V+K GSS+G+ ++ + + +++L+EQ++ G Sbjct: 122 IEDALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAV--EDVFKLDEKVLVEQFIKGR 179 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT G++ D D+ E+ V + FY Y+ KY + + ++ PA++P ++YK VQ + + + Sbjct: 180 ELTVGILDDEVFDIVEVVVEEG-FYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +++ C+G +R D + D S + LE+N PGMT S+ P+ AA G SF +L+ Sbjct: 239 KSLNCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLV 291 >gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. 8004] gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris] Length = 318 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 166/301 (55%), Gaps = 14/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ P Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLS-TPRYARLAAGA 137 Query: 119 DSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +Q + I P ++KP GSS+G+ + DQ+ LD + + + LL+EQ + Sbjct: 138 SAQQIHAAAEQIGLPVIVKPANEGSSVGVSRV-FDQA-QLDEAVTLAARYDGALLMEQLI 195 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++ +LA Sbjct: 196 EGDELTVAVLGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LDGDAEAQIGQLAL 253 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +A GC G R D + D + +++ LE+N PGMT S+ P+ A G F E L+W Sbjct: 254 DAFRAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-EALVWR 312 Query: 293 V 293 V Sbjct: 313 V 313 >gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 323 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 32/317 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V++ DVD S+ L +PD +LHG Sbjct: 13 VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----------- 111 GEDG ++ ILELL +PY + A ++ DK +K VV+ GV S+ Sbjct: 73 GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132 Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 LV+R + P ++KP + GS+LG V++ + +P ++ S++ +GD Sbjct: 133 AGAVMAALVDRLGL--------PLMVKPTRSGSALGCTVVRTAEQLPAAMV--SAFAYGD 182 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPL 221 L+E++V G+E+ V+ D S AV P Y Y +Y++ + V PA + Sbjct: 183 VALLERFVPGMEVAVPVVDDGSGARALPAVAIQPDGGVYDYTARYTAGATEFVTPAPLSE 242 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ EV R+A LAH+ +G R +SRSD + D R V++LE+NV PG T S P A Sbjct: 243 ELAAEVARVALLAHEVLGLRDVSRSDLIIDHEGR-VWFLEVNVAPGFTETSTVPLAIQAA 301 Query: 282 GYSFRELLLWMVEDASC 298 G ++ MV+ A+ Sbjct: 302 GLDLGKVCASMVQAAAA 318 >gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +K GSS+G+ +K + + + ++ ++ +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKFD--SIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D K +E+N PGMT SIFP+ AA G SF +L+ ++E Sbjct: 244 VVGCRGWSRIDVMEDG-EGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLE 300 >gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 303 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 171/302 (56%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 + VL GG SSEREVSL SG +A+E G + +D R + L +L K D F LH Sbjct: 3 IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLD-PRYIDLSMLGFYKLDKVFIALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 G GE G VQ++L++L+IPY SG+LASA+S++K+++K++ + G+ P +LV + Sbjct: 62 GGMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQ 121 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D L S P V+KPL G S+G V K D + L +++ + ++L+EQ++ G Sbjct: 122 VDIMALCSELTFPVVVKPLNQGCSIG--VAKADNEVQLWDALLAAFEYDTEVLVEQFIVG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E TC V+ +L V +I +F+ + K+ + ++T+ P+ + + +Q A Sbjct: 180 REYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAA 237 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +QA+GCRG R D L V+ +E+N PGMT S+FP AA G S+ L+ +++ Sbjct: 238 YQALGCRGWGRIDVLLTE-HNDVYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLD 296 Query: 295 DA 296 A Sbjct: 297 HA 298 >gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] Length = 311 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV L +LA+N++H Sbjct: 10 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPE-GTELAYNIIH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + ++ N Sbjct: 68 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 M S L P+VIKP GSS+G+ ++++ + + L ++ + HG +L+E+++ G E Sbjct: 128 VMPSLPL---PFVIKPPCEGSSVGVHIVRRQEDV-LPAMEEAV-THGTTVLVEEFIQGKE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAF 232 LT G++ +L V I P+S FY KY +N + ++ PA +P + VQ A Sbjct: 183 LTVGILDGKALPVIHIC-PRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAAL 241 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + Sbjct: 242 KAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKI 301 Query: 293 VE 294 E Sbjct: 302 AE 303 >gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP] gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP] Length = 303 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 168/299 (56%), Gaps = 11/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127 Query: 120 SQHLI---SPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +I S P +KP GSS+G+ +K K++ +P +++ +L+E+++ G Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLP---AITAALEFDTIVLVEEFLTGA 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E + V+ L +I +P +FY Y KY S + +++PA + + EV ++ A+ Sbjct: 185 EYSVPVLDGEVLPAVQI-IPDGEFYDYHAKYLSDKTQYIVPA-LTNERQAEVAKIVKAAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D ++ +E+N PGMT SIFP+ AA G SF +L+ ++E Sbjct: 243 DVVGCRGWSRIDVMEDQ-NQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLE 300 >gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila] Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV L +LA+N++H Sbjct: 15 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPE-GTELAYNIIH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + ++ N Sbjct: 73 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 M S L P+VIKP GSS+G+ ++++ + + L ++ + HG +L+E+++ G E Sbjct: 133 VMPSLPL---PFVIKPPCEGSSVGVHIVRRQEDV-LPAMEEAV-THGTTVLVEEFIQGKE 187 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAF 232 LT G++ +L V I P+S FY KY +N + ++ PA +P + VQ A Sbjct: 188 LTVGILDGKALPVIHIC-PRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAAL 246 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + Sbjct: 247 KAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKI 306 Query: 293 VE 294 E Sbjct: 307 AE 308 >gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] Length = 302 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL G D LA D F LHG Sbjct: 8 VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELAGF--DRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LEL+ IPYT SG++AS++ MDK R+K + + GV V P + T DS Sbjct: 66 RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGV-VTPDFEL--VTADS 122 Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDG 174 + + P +KP GSS+GI +K + ++ D L+I EQ+V G Sbjct: 123 NFDAIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALAAK---SDPLVIAEQFVGG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T G++G A+L V I VP ++FY YE KY ++ ++ P + + ++++ A A Sbjct: 180 GEYTVGILGGAALPVIRI-VPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +G RG R DFL D R F LE+N PGMT S+ P A G F EL+L ++E Sbjct: 239 FRIVGGRGWGRVDFLMDEAGRHYF-LEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILE 297 >gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804] gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii] Length = 326 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 165/309 (53%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ER+VSL SGK AL AG D LA D F LHG Sbjct: 18 VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL +PYT SG +AS+LSMDK+ +K+V G+ P+ V +D+ Sbjct: 78 RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRT-PAFEV----LDA 132 Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q + P ++KP GS++GI + + Q++ ++ D++L EQ++ Sbjct: 133 QAELRTVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKEGYAQAAKFD--DEVLAEQFIA 190 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V+G +L V EI P + Y YE KY S + + PA +P + EV Sbjct: 191 GRELTVAVLGTGAAAHALPVIEIVAPGGN-YDYEHKYFSDETQYFCPADLPDAVAAEVAD 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A++A+GC G R DF+ D +R + LE N PGMT S+ P A G S+ EL Sbjct: 250 LAVRAYRALGCAGWGRIDFMLDADNRP-WLLEANTSPGMTSHSLVPMAAKAIGMSYAELC 308 Query: 290 LWMVEDASC 298 + +V +A+C Sbjct: 309 VSIVSEAAC 317 >gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36] gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36] Length = 312 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 157/295 (53%), Gaps = 10/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG +D L AF LHG Sbjct: 14 VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VCPSILVN 114 GEDG++Q LE L IPYT S +L +AL+MDK+R+KQ+ S G+P V P Sbjct: 74 RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P +IKP K GSS+G+ K L+ ++++ + +++L+EQ+++G Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGM--AKVHNVAELETAVTAAFAYDNEILVEQWIEG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD L V ++ P + FY Y+ KY S + ++ PA I + +++Q A A Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNT-FYDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ G R D + D + LE+N PGMT S+ P A AGY+F L+ Sbjct: 251 FHAVAAEGWGRVDAMLDAQGQFQL-LEVNTVPGMTEKSLVPMAANAAGYNFDSLV 304 >gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 326 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/292 (36%), Positives = 165/292 (56%), Gaps = 9/292 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG ERE+SL +G+A +ALE G +V++I + L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K+ + V R Sbjct: 65 RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V+KP GGSS+G+ ++++ +++ + Q+S + G + L+E+YV G E Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEALAFAVAQASRF--GGEALVERYVAGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L E+A P+ F ++ KY + + P ++ V+ LA A++ Sbjct: 183 VTVGILGGQVLGSCEVATPREGF-DFDAKYKG-GAAYFCPPRLSPTRVANVEALALAAYR 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+GCRG +R D + V LE+N PG TP S+ P++AA AG F L Sbjct: 241 ALGCRGQARVDLMCSDTENDVV-LEVNTLPGFTPTSLLPKIAARAGLDFAAL 291 >gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii] gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 332 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +L +G+ IDV + L ++ F LHG Sbjct: 17 IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L IPYT SG+ ASA+ M K+ +K +++ G+PV +V R S Sbjct: 77 PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136 Query: 121 QHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P V+KP GS++G+ +++K L + ++ ++ ++E ++ G Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEALRTAHRYD--EEAMVEAFIPG 194 Query: 175 IELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E+T ++G L EI P FY + KY + ++ PA + + +++++ Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAP-DGFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQ 253 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +QA+GC G +R DF P K F LEIN PGMT S+ P A AG S+ L Sbjct: 254 FAIRTYQALGCSGAARVDFRVTPKG-KPFVLEINTVPGMTETSLLPMAAGKAGLSYDALT 312 Query: 290 LWMVEDA 296 +++ A Sbjct: 313 ERILQSA 319 >gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R V + L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 64 GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D + I+ P +IKP + GSS+G+ K +S L + ++ H D++L+E+ Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P +Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFKDPARESAIQNL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] Length = 309 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 176/303 (58%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 +A+L GG SSEREVSL SG AL+ A + + + D + L+ D+A ++H Sbjct: 6 LALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TM 118 G +GEDG +Q +L+LL +PY SG++ASAL+M+K SK + G+ V ++ +R + Sbjct: 66 GRWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAI 125 Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + L + P VIKP+ GSS+G+ V + + + ++ +++ ++L+E+++ G+ Sbjct: 126 DPRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEALAYDR--RVLVEEFISGM 183 Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ + L + EI KS F++YE KY + ++PA++ ++ VQ Sbjct: 184 EVTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECG 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+GC G SR+D + +++ LE N PGMT S+FP+ A G F LL Sbjct: 244 LTAHRALGCWGYSRTDTIVR--DGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDR 301 Query: 292 MVE 294 +VE Sbjct: 302 LVE 304 >gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 322 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 165/293 (56%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P S+L + + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +D +++S + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAEL-IDAWKAAS-TYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L Sbjct: 257 GIAGWARADVMQD--DQGNFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307 >gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710] gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304] Length = 304 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 169/307 (55%), Gaps = 23/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170 D+ + + P +KP GSS+G++ +K+ + L LQ +++ E+ Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 ++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R Sbjct: 177 FIGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRE 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L Sbjct: 236 LAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLC 294 Query: 290 LWMVEDA 296 + +++ A Sbjct: 295 IEILKTA 301 >gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20] gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 303 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 11/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S+ +I+ P +KP GSS+G+ +K +Q +P + +L+E ++ G Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLP---AVEEALKFDSIVLVEAFLAGK 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E + V+ L +I +P+ +FY Y KY S N+ +++PA + D EV L A+ Sbjct: 185 EYSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E Sbjct: 243 EVVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300 >gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86] gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVTILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A A SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC 35316] gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 166/306 (54%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL+SG A + L + G +D L + D F LHG Sbjct: 5 IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + M Sbjct: 65 RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P ++KP + GSS+G+ + K +P L + ++ H +++LIE++ Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + +++ L Sbjct: 183 LSGPEYTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDAS 297 +++ A Sbjct: 301 ILDQAG 306 >gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R V + L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 64 GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D + I+ P +IKP + GSS+G+ K +S L + ++ H D++L+E+ Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P +Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D LA K D F LHG Sbjct: 30 VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNR-FT 117 FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+ S G+ P + + Sbjct: 90 RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +HL P ++KP GSSLG+ +K + +P ++ + +++ E + G EL Sbjct: 150 AVVKHL-GLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAAGLDK--KVIAETCIVGDEL 206 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++G +L V +I P+++ Y + KY S + ++ P + +I VQ LA Sbjct: 207 TCPLVGQGNSAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLTAEINAAVQDLALA 265 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+Q +GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW++ Sbjct: 266 AYQTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325 >gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 318 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ ++ Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYDS--QVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G R D + D + FW LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGQ--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314 Query: 298 CLR 300 R Sbjct: 315 ATR 317 >gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 306 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R V + L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 64 GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D + I+ P +IKP + GSS+G+ K +S L + ++ H D++L+E+ Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P +Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] Length = 331 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++G+ +L + I P+++ Y Y+ KY + ++ + PA I D+ VQ L Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAADVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ASAS 319 >gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 313 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 22/303 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+++ER+VSL SG AL+ G DV LV K D AF LHG Sbjct: 18 VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VCPSILVN 114 +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K + G+P V PS ++ Sbjct: 78 RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171 T D ++ P ++KP GSS+G+ + LD LQ + + + ++LIEQ+ Sbjct: 138 VETFD----LTFPVIVKPSHEGSSIGMRKVDT-----LDALQEAVDFAQQYDSEILIEQW 188 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E TC V+ +L + ++ DFY ++ KY S + ++ P + + K +Q L Sbjct: 189 ITGREFTCAVLDGEALPMIQLKT-DHDFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALV 247 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G R R D + D ++ WL EIN PGMT S+ P A SF +L+L Sbjct: 248 LQAFDAVGARHWGRVDLMLDDQNQP--WLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVL 305 Query: 291 WMV 293 ++ Sbjct: 306 KLI 308 >gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/296 (36%), Positives = 165/296 (55%), Gaps = 9/296 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG S ER+VSLS + +ALE G +V+ D R++ GL+ A D AF LHG Sbjct: 5 LIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLHGQ 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120 GEDGLVQA+LE +PY SG S L+++K +K+V G+P + + D Sbjct: 65 PGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELT 178 + + P IK GGSSL + + S P +L ++ + G + +IE V+G+E+T Sbjct: 125 EPPFAFPAFIKSNNGGSSLALHRV----SCPGELARALDELFTRGGEAIIEPAVEGVEVT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+GD +L I + F+ Y KY+ + + PA +P ++ +V+ A AH+A+ Sbjct: 181 CGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G RG SRSDF+ P + + LE+N PGMT S+ P+ AA G SF L+ ++E Sbjct: 241 GLRGYSRSDFILTP-AGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIE 295 >gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] Length = 779 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ P S T Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592 Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 I S P V+K + GSS+G+ ++ ++ + L ++++G ++L+E+++ Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSL--DEAFSYGGEVLVEEFIA 650 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ +L V EI S Y YE KY+ S H++PA I + EVQ Sbjct: 651 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 709 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 710 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 768 Query: 290 LWMVEDASCLR 300 ++E A R Sbjct: 769 EKILEMAGYQR 779 >gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia solanacearum CFBP2957] gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CFBP2957] Length = 331 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L Sbjct: 197 TCAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 256 AYRGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ATAS 319 >gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 306 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 158/296 (53%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA +AL G ID L L L D F LHG Sbjct: 8 VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q L L+IPYT S +L+SA++MDK ++KQ+ S +P ++ + D Sbjct: 68 RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S ++KP+ GSSLG+ + + + L ++ ++ +L+E ++ G Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKALTEAFKFDQ--TVLLETWITG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L + + FY Y+ KY S ++ + P + + E+ +LA A Sbjct: 186 QEYTVSILNGKALPAIRMHTNNT-FYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AIGCRG R DF+ D S + + LE+N PGMT S+ P+ A AGY F +L + Sbjct: 245 FAAIGCRGWGRVDFMLDK-SGQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTI 299 >gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 318 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + DQ+ D + ++ G LL+EQ ++ Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313 >gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] Length = 331 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L Sbjct: 197 TCAVIGEGESATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 256 AYRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ATAS 319 >gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] Length = 334 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 11/302 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61 VLMGG SSER VSL SG+ AL+ G D +RS+G L D AF LHG Sbjct: 24 VLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLG-DLEKAGYDRAFIALHGR 82 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120 +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+ + +P P +L+ + Sbjct: 83 YGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLAG 142 Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +IKP GS+LG+ + +P +++ + +L E++V G ELT Sbjct: 143 LAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAADIDF--PVLAERFVQGRELTV 200 Query: 180 GVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+G +L + EI P + Y Y KY + ++ ++ PA + + ++ LA A+ Sbjct: 201 AVIGSGAAARALPIVEIRAPNGN-YDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAAY 259 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC G R D + D +++ + LE+N PGMT S+ P A AG S+ +L+L + Sbjct: 260 RAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTAQ 319 Query: 296 AS 297 AS Sbjct: 320 AS 321 >gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25] gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25] Length = 318 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 164/293 (55%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P S+L + + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +D +++S + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAEL-IDAWKAAS-TYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G G +R+D + D + FW LE+N PGMT S+ P A AG F++L+L Sbjct: 257 GIAGWARADVMQD--DQGNFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307 >gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] Length = 318 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 165/303 (54%), Gaps = 14/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQID-VDRSVGLVLAHLKPDLAFNVL 58 +AVL GG S ERE+S +SG++ AL+ AG+ +V +D D + D F L Sbjct: 11 IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117 HG GEDG +Q +L+ L IPYT SG+ ASA + DK SK + G+PV + + R Sbjct: 71 HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130 Query: 118 MDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ L++ +KP GSSLG+ +I+ +P + ++ D++LIEQ + G Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAV--ERAFESSDKVLIEQRLIG 188 Query: 175 IELTCGVMG--DA-SLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E++ GV+G DA +L V EI +DFY+ E+KY H +PA++P I + L Sbjct: 189 TEISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGAL 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+A+GC G SRSDF+ LE N PGMT S+FP+ + G +F E Sbjct: 249 ALGAHRALGCYGFSRSDFIV--TEEGPVILETNTIPGMTEASLFPDEIRHCGRTFAEACD 306 Query: 291 WMV 293 M+ Sbjct: 307 EMI 309 >gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 289 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 156/285 (54%), Gaps = 13/285 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG +D S L D F LHG GEDG +Q +LE Sbjct: 1 MSLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124 L++PYT SG++ASAL+MDK+R+K V + +P+ P + +NR T+ S+ L + Sbjct: 61 FLQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P ++KP GSS+G+ K DQ+ L ++ H +LIE+++ G E T ++GD Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDQASELQAALVEAFRHDTDVLIEKWLSGPEFTVAILGD 178 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L I P FY YE KY S + + P+ + ++ +++ LA A+QA+GC G Sbjct: 179 EVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWG 237 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D + D R + LE+N PGMT S+ P A +G SF +L+ Sbjct: 238 RVDVMQDSDGR-FYLLEVNTSPGMTSHSLVPMAARESGLSFSQLV 281 >gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4] gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G IDV V L+ + + AF LHG Sbjct: 13 VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ G+P ++N T D Sbjct: 73 RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGT-DL 131 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ P ++KP + GSSLG+ + +++ ++ +++ ++ EQ++ G E Sbjct: 132 ALVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAYREAMAFD--GTVIAEQWLPGAEY 189 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ +L + + P+ FY +E KY + + ++ P + + + +Q LA A QA Sbjct: 190 TAAILTGRALPLIGLETPRI-FYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQA 248 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R DF D +R LE+N PGMT S+ P A AG F +L+L ++E Sbjct: 249 LGASGWGRVDFRCDAQARPCL-LEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILE 304 >gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 306 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 21/307 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + V P I + + Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168 + + + P VIKP GSS+GI ++ DLL S ++N+ + ++I Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHP-----DLLIDSINLAFNYSNNIII 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T ++ L +I + K++FY Y KY ++ ++ P+ + +E++ Sbjct: 180 EKFLKGTEYTVSILNKKVLPPIKI-ITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELK 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++ +A ++GC+G R D + D ++ FW LEIN PGMT S+ P A G SF E Sbjct: 239 KIVEIAWNSLGCKGCGRIDAILD--NKDKFWLLEINTIPGMTHRSLVPMAAKSIGISFDE 296 Query: 288 LLLWMVE 294 L+L +++ Sbjct: 297 LILKILK 303 >gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 304 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 17/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + D Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173 + + + P +KP GSS+G++ +K+ + L LQ +++ E+++ Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232 G E +C V+ L I +P ++FY YE KY+ ++ + PA+ + + + R LA Sbjct: 180 GGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAV 238 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + + Sbjct: 239 RGAQAIGAAGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEI 297 Query: 293 VEDA 296 ++ A Sbjct: 298 LKTA 301 >gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] Length = 307 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 156/296 (52%), Gaps = 14/296 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S+EREVSL SG A AL AG ID+ ++ +A D AF LHG Sbjct: 16 VLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGTL 75 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +LE++ IPYT S ++ASAL M+K KQV+ G+ P + T ++ Sbjct: 76 GEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLST-PMDIRIEVTGPERY 134 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP+ GSS+G+ I Q L++ ++W + E V+G+E+ V Sbjct: 135 ----PVFVKPVAEGSSVGLHRISSQQEWQALNIQSPAAW------MAEMPVNGVEIAVSV 184 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L E+A PKS Y Y KY+ + + PA++P++ + A A A GC Sbjct: 185 LAGVALMPVEVA-PKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G R D + V LEIN PGMT S+ P+ AA AG F+ L L ++E AS Sbjct: 244 GAPRVDMIVGSGGEAVI-LEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298 >gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] Length = 334 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 163/306 (53%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG S+EREVSL SG AL G D +S L+ LK F Sbjct: 18 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSD---LSELKSHGYARCFIA 74 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG VQ LELL IPYT G++ASA++MDK+ +K++ G+P LV+ Sbjct: 75 LHGRHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAA 134 Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +Q L + P ++KP + GS++G+ + +S ++ ++L EQ+++G Sbjct: 135 ETAQALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLASRYD--PEVLCEQFIEGE 192 Query: 176 ELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E TC V+G + L V I P+ + Y Y+ KY + + + P +P +E+QRL Sbjct: 193 ETTCPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPCGLPEQEEREIQRLV 251 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L Sbjct: 252 VEAFRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLR 311 Query: 292 MVEDAS 297 ++ AS Sbjct: 312 ILAGAS 317 >gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 316 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 169/310 (54%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60 VL GG+S EREVSL SG+ A L AG V D D GLV A L P+ AF LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTD--AGLVPAVLADPPEAAFVALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++++LELL +PY + A ++ DK +K VV S G+ S+ + + T Sbjct: 67 GVGEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHD 126 Query: 121 -------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ P +KP +GGS+LG +++ + +P ++ + +GD LIE+ Sbjct: 127 LGASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAMV--GCFAYGDTALIEK 184 Query: 171 YVDGIELTCGV--MGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y+DG+E++ V +GD + +T + VP Y Y +Y++ + PA++ + + Sbjct: 185 YIDGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEAC 244 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + +A AH A+G R +SR+D + D S + ++LE+NV PGMT S+FP AG Sbjct: 245 KAMAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGT 303 Query: 288 LLLWMVEDAS 297 + ++E A+ Sbjct: 304 VFRVLLERAA 313 >gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640] gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06] Length = 304 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 17/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + D Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173 + + + P +KP GSS+G++ +K+ + L LQ +++ E+++ Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232 G E +C V+ L I +P ++FY YE KY+ ++ + PA+ + + + R LA Sbjct: 180 GGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAV 238 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + + Sbjct: 239 RGAQAIGAAGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEI 297 Query: 293 VEDA 296 ++ A Sbjct: 298 LKTA 301 >gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 153/291 (52%), Gaps = 8/291 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61 ++ GG S EREVSLS K +ALE+ G +V+ D + LV + D AF LHG Sbjct: 5 LIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLHGT 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDGL+QA+L+ PY +G AS L++DK SK+V + G+ P + Sbjct: 65 PGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGADT 124 Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L P P +KP KGGSSLG+ +++ P L S + L+E ++ G+ELTC Sbjct: 125 PLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSAL--SKVFAMCQSALVEIFIPGVELTCA 182 Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD L + I PK+ F+ YE KY++ + V PA + + + VQ AH A+ Sbjct: 183 VLGDRPLPLIMI-TPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNAL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G G SR DF+ + LEIN PGMTP S+ P A G SF L+ Sbjct: 242 GLTGYSRGDFILA-ADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALI 291 >gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] Length = 306 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 155/297 (52%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 121 QHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 H I + ++KP GSS+G+ Q + L+ + ++ Q+L+EQ++ G E Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDALINAFKFD--SQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P FY Y+ KY S + + PA + +++Q ++ A Sbjct: 189 TVTVLGDEVQPVIEMTTPNG-FYDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILE 303 >gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1] Length = 306 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + L + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I + FY YE KY S + + P + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQSAGT-FYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] Length = 333 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 166/309 (53%), Gaps = 21/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVLMGG S+EREVSL SG AL+ G D R +G LK D F Sbjct: 11 VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELG----ELKRDGYARCFI 66 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ LELL IPYT SG+LAS+++MDK+ +K++ + G+P N Sbjct: 67 ALHGRFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPT--PRWKNVT 124 Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++D + P ++KP + GS++G+ + D + Q ++ H +L EQ++ Sbjct: 125 SVDETRAALAELGAPMIVKPAREGSTIGLTKVN-DATQCAQAYQLAA-QHDPLVLCEQFI 182 Query: 173 DGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+T V+G + L I P + Y YE KY S + +++P+ +P +Q Sbjct: 183 AGDEVTVPVIGSGADARALPAIRIVAPGGN-YDYEHKYFSDGTQYIIPSGLPEGEEARIQ 241 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L + A+GCRG +R+D + D +R + LEIN PGMT S+ P A AG S+ +L Sbjct: 242 DLVLRSFHALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDL 301 Query: 289 LLWMVEDAS 297 L ++ A+ Sbjct: 302 CLRLLATAT 310 >gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] Length = 309 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 160/296 (54%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ERE+SL SGKA AL G IDV R + L + D FNV+HG Sbjct: 14 VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG++Q L L +P T SG+LASALSMDK+R+K + G+P P + ++ Sbjct: 74 RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G+ + + ++S +G + E+++DG+E T Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQAWERAS--GYGCAVFAERWIDGVEYT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ L + + P + FY ++ KY + + + P + E+Q L A Q + Sbjct: 192 GGMLKGVPLPLIRLETPHA-FYDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G G R D L D S + + +E+N PGMT S+ P A AG F+EL+ ++E Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILE 305 >gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 314 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/293 (37%), Positives = 163/293 (55%), Gaps = 10/293 (3%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 GG S+EREVSL SG A ++L +G D L L PD F +HG GED Sbjct: 23 GGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGED 82 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 G +Q LELL IPYT SG+LASAL MDK R+KQ+ + G+P S+++ D +I Sbjct: 83 GSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEG-EPDWDAVIE 141 Query: 126 P---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P ++KP+ GS++GI +++ ++ ++S ++ ++ E++V G E T ++ Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAAHAEASRFD--SAIMAERFVQGEEYTVSLL 199 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD L + VP S FY YE KY S + ++LP + + + + + A +AIG RG Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258 Query: 243 ISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R D + D R FW LE+N PGMT S+ P+ AA+AG F L+L +++ Sbjct: 259 WGRVDVMRDAQGR--FWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILD 309 >gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 315 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 167/296 (56%), Gaps = 13/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+ER+VSL SG +AL + G V VD GL L D F VLH Sbjct: 20 VAVLFGGASAERDVSLKSGGQVLAALRNVG--VDCFHVDPRDGLQPLLDGDFDRVFIVLH 77 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L LL PYT S +LASAL+MDK+R+KQ+ + G+P P V D Sbjct: 78 GRGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPT-PKYAVLDAGSD 136 Query: 120 SQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + +++ P ++KP+ GSS+G+ + + + L+++ ++ ++ EQ++ G Sbjct: 137 WEAIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAAKFDS--VVIAEQWITG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++G+ +L ++ + FY YE KY ++ ++LP +P D E++ LA A Sbjct: 195 AEYTVSILGEDALPAIKLETDRQ-FYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++AIGC G R D + D + + LE+N PGMT S+ P A +G SF +L+L Sbjct: 254 YRAIGCSGWGRVDIMCDAAGQP-WLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVL 308 >gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] Length = 303 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S+ +I+ P +KP GSS+G+ K + + + ++ ++ +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAIEEALKFD--SIVLVEAFLTGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L +A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LTDERQAEVAKLVKVAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300 >gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxidans DMS010] gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxydans DMS010] Length = 312 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 169/300 (56%), Gaps = 9/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SGKA + L+ G IDV + LA + D AF VLHG Sbjct: 14 VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ + +P+T SG+ AS LSM+K SKQ G+P V++ T D+ Sbjct: 74 RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQAT-DT 132 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + LI P +IKP+ GSS+G+ + +++ + + + + D ++ EQ++ G E Sbjct: 133 EQLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAI--ALALKYDDDVIAEQWIQGEEY 190 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ +L + P+ +FY +E KY S ++ ++ P + L+ +++Q+LA A + Sbjct: 191 TVAILDGQALPGIRLKTPR-EFYDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEG 249 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G G R DF+ D + + + LE N PGMT S+ P A AG F + L+W + + S Sbjct: 250 LGMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDF-DALVWRILETS 307 >gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] Length = 320 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +LASALSMDK+R+KQV + G+P VC + Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ +LA A +GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 249 EIAQLALAAFHGVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 309 DDLVWRILE 317 >gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 306 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG A + L + G +D R V + L AF LH Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 64 GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D + I+ P +IKP + GSS+G+ + + + L + ++ H D++L+E+ Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASAL--ALAFQHDDEVLVEK 181 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T ++G+ L I + FY YE KY S + + P +Q L Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 >gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] Length = 304 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 154/294 (52%), Gaps = 6/294 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG SSER VSLS AL G +V D+ G V D F LHG Sbjct: 5 LVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDGL QA+L+ +PY SG S L+++K SKQ+ +P V R S Sbjct: 65 PGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGTSA 124 Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P P+ +KP GGSS+ + ++++ + +P L + HGD LIE+ + G ELTC Sbjct: 125 RPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAAL--EKVFAHGDDALIEEGLSGPELTCA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I +F+ Y KY + + PA + + +E+ RL+ AH+ +G Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G SR+DF+ P ++ LE+N PGMTP S+ P AA AG SF +L+ ++E Sbjct: 243 CGYSRADFILAPEGLRL--LEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIE 294 >gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] Length = 331 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 163/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARLDR--DVMAEQFIEGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP ++ VQ L Sbjct: 197 TCAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 256 AYRSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ATAS 319 >gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] Length = 299 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 170/297 (57%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ER++S+ SG A AL++ ++VS ID + L + D AF LHG Sbjct: 6 IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSLVNY--DAAFICLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++LELL++P+T S AS L+M+K SK V ++ + +++N+ +D Sbjct: 64 KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123 Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +I S P+++KP GSS GI ++K + L +S ++ ++ E++++G E Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYD--PTVIAEEFIEGREF 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++G+ SL V EI K++FY Y KY S + P + ++ ++++ +A A + Sbjct: 182 TVSILGNKSLGVLEITT-KNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 IGC G R DF+ D + +E+N PGMT S+FP A AG +F + + +V+ Sbjct: 241 IGCSGWGRVDFMMDK-KFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVD 296 >gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 164/297 (55%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I VN Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ ++ ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGLKYD--EEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294 >gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] Length = 299 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 161/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSEREVSL+SG + + ++V + +D+ ++ D A LHG Sbjct: 3 VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQA+LE L IPY+ L+S+L MDK +K ++ + G+ + V +D Sbjct: 63 KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P IKP GGSS+ I K + + + + W+ ++++IE+++ G E+ Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKWD--NEVMIEEFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + V I K+DFY YE KYS+ + H + DI+ EV+++A ++A Sbjct: 181 TCPVFENEMFPVLAIKA-KTDFYDYEQKYSANGAEH-YAINLEKDIHSEVEKMALDTYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ E + ++E Sbjct: 239 LKCSVYARIDMIITEEGVP-YVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIE 294 >gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7] Length = 319 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 169/303 (55%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++L N + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G G +R+D + D + FW LE+N PGMT S P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSV 315 Query: 298 CLR 300 R Sbjct: 316 QAR 318 >gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] Length = 313 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 166/301 (55%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P D E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLDAQG-NAYFLEVNTAPGMTDHSLPPKAARAIGIGYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] Length = 311 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVL GG S ER VS+ SG A AL + + D + L+ + DL NVLH Sbjct: 7 IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q +LE+ +P+ S +L+SA++M+K SK+V + G+ V I++ R Sbjct: 67 GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126 Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S + ++ P VIKP+ GSS+GI +++ D I + ++ +++L+E+YV+G Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGI--EKAFEFAEEILVEEYVEGR 184 Query: 176 ELTCGVMGDASLDVTEI--AVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T V+G ++L+ + VPK F+ ++ KY + S + PA + DI ++ + Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+++ CR SR+D + +++ LE N PGMT S+ P A G+S LL Sbjct: 245 KKAHRSLRCRDWSRTDMMIK--KDQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302 Query: 292 MVEDASCL 299 M+E +CL Sbjct: 303 MIE--TCL 308 >gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU] gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900] gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU] gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978] gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2] gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715] gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] Length = 308 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 165/300 (55%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K++Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301 >gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 337 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 162/301 (53%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D L K D F LHG Sbjct: 30 VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV S G+ P T D Sbjct: 90 RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGL-ATPEYEELTATSDW 148 Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 QHL P ++KP GSSLG+ +K + +P ++ + +++ E + G E Sbjct: 149 NAVVQHL-GLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAAGLDK--KVIAETCIIGDE 205 Query: 177 LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LTC ++G +L V +I P+++ Y + KY S + ++ P + ++ VQ LA Sbjct: 206 LTCPLVGQGKTAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLAPEVNAAVQTLAL 264 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++A+GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW+ Sbjct: 265 AAYKALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWL 324 Query: 293 V 293 + Sbjct: 325 L 325 >gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 335 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/306 (36%), Positives = 164/306 (53%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG S+EREVSL SG AL G D +S L+ LK F Sbjct: 19 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSD---LSELKSHGYARCFIA 75 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV+ Sbjct: 76 LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAA 135 Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +Q L + P ++KP + GS++G+ + +S ++ ++L EQ++DG Sbjct: 136 ETAQALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLASRYD--PEVLCEQFIDGE 193 Query: 176 ELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E TC V+G + L V I P+ + Y Y+ KY + + + P+ +P +E++RL Sbjct: 194 ETTCPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEQEEREIRRLV 252 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L Sbjct: 253 VEAFRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLR 312 Query: 292 MVEDAS 297 ++ AS Sbjct: 313 ILAGAS 318 >gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] Length = 342 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 9/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + P + Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ ++ ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARFD--SRVLVEQFIEGDEVT 192 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L + I P + Y YE KY S ++ ++ P+++P D +Q L + Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGN-YDYEHKYFSDDTRYICPSELPADEEARIQDLVLHS 251 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCL 307 >gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] Length = 303 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ GL+ A D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMD 119 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ + P + L R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGI-LTPDWAFLAARPAAD 123 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +KP GGSSL + + + + + L + + H + ++E + G+E+TC Sbjct: 124 WEPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTC 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 182 GVLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 242 LRGYSRADYILRD-DGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295 >gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] Length = 313 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 168/301 (55%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] Length = 306 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 17/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG++ + L++AG +D L AF LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+ +PV P +N + Sbjct: 65 RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124 Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169 Q + P ++KP GSS+G+ + + L+L ++ H +L+E Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGALEL----AFQHDTDVLVE 180 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E T +GD L I P+ FY Y+ KY S + + P+ + + E+ Sbjct: 181 KWLLGPEYTVAFLGDEVLPSIRIQAPEV-FYDYDAKYLSNETKYFCPSGLSAEKELELAE 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A++A+GC G R D + D + + LE+N PGMT S+ P A +G SF +L+ Sbjct: 240 IASKAYKALGCSGWGRVDIM-DDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 298 Query: 290 LWMVE 294 + ++E Sbjct: 299 VKILE 303 >gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille] gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille] Length = 320 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 166/307 (54%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVSL SGK +AL G D +RS+ LA K D F LH Sbjct: 8 VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLA-ELAAEKFDRVFIALH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117 G FGEDG +Q LE L IPYT G++ASA++MDK+ +K+V S GVP ++ V T Sbjct: 67 GRFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATT 126 Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I+ P ++K GS++GI ++ + + + ++ D +L+EQ+V Sbjct: 127 AEQLQAIAAEFGMPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYD--DVVLVEQFVK 184 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V+G +L + EI P+ + Y YE KY S ++ ++ PA K VQ Sbjct: 185 GRELTVPVLGSGRNARALPIVEIIAPQGN-YDYEHKYFSDDTQYLCPAPFDAAFTKRVQA 243 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A+GC G +R DFL + F LEIN PGMT S+ P A AG ++ +L Sbjct: 244 LAVSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLC 303 Query: 290 LWMVEDA 296 + ++ A Sbjct: 304 VEILRMA 310 >gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana) tropicalis] Length = 334 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 164/308 (53%), Gaps = 19/308 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG SSEREVSL SG AL G D + LA LK F Sbjct: 20 VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHAS---LADLKTHGYTRCFIA 76 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NR 115 LHG GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ G+P LV Sbjct: 77 LHGRHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAA 136 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVD 173 T + + P ++KP + GS++G+ + P Q+ + H ++L EQ++D Sbjct: 137 ETAQALAALGAPMIVKPAREGSTIGLTKVTS----PGQCQQAYRLAAQHDPEVLCEQFID 192 Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E TC V+G + L V I P+ + Y Y+ KY + + + P+ +P + +QR Sbjct: 193 GDETTCPVLGQGASATALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEERAIQR 251 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L A++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG S+ L Sbjct: 252 LVERAYRTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALC 311 Query: 290 LWMVEDAS 297 L ++ AS Sbjct: 312 LRILASAS 319 >gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] Length = 320 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P VC + Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ +LA A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 249 EIAQLALAAFHSVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 309 DDLVWRILE 317 >gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1] Length = 351 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++K L + W + +L+IE++V G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] Length = 309 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG A AL +G D +RSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE L +PYT +G+ SA+ MDK+++KQV +P P +V + + D Sbjct: 67 GRGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDS-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + +++ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 ATEIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T V+ +L V + P+ FY YE KY + + +P + ++++ L+ A Sbjct: 184 YTIVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D FW LE+N PGMT S+ P+ AA GYSF EL + ++E Sbjct: 244 QAVGASGWGRIDAMQDEQGN--FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILE 301 >gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894] Length = 306 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 169/308 (54%), Gaps = 17/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L++AG +D L D F LHG Sbjct: 5 IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L +PYT SG++ASA++MDK+R+K + G+PV + + R + Sbjct: 65 RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124 Query: 120 --SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169 S+ L + P ++KP + GSS+G+ + +++ L+L ++ H ++L+E Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPALEL----AFEHDSEVLVE 180 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E T ++GD L I P FY YE KY S + + PA I + +Q Sbjct: 181 KWLSGPEFTVAILGDEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQA 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 240 LVMDAWRVLGCRGWGRVDVMQDS-DGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLV 298 Query: 290 LWMVEDAS 297 + ++E A+ Sbjct: 299 VRILELAN 306 >gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273] gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273] Length = 361 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 57/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 +A+L GG S E E+S+ S +A A+ ++ ++V + + R G Sbjct: 6 VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65 Query: 44 ----------------LVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIP 78 +V A +P D+AF VLHG++GEDG VQ +LE L++P Sbjct: 66 LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLI-----SPPYV 129 T G+LASAL+MDK +K + G+ V S+ V R ++ H + S P Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP+ GSS+GI + + + + + S + ++LIEQ V G E+ V+G+ +L+ Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHACSLD--SKVLIEQAVKGREVEVAVIGNDTLEA 243 Query: 190 T---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + EI P S+FY YE KY + +PA+IP D+ ++V+ A A++A+GCRG+SR Sbjct: 244 SPCGEIE-PGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 DF D + + + EIN PG TPVS++P + A AG F EL Sbjct: 303 DFFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMEL 344 >gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 170/304 (55%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGKA AL+ G D + L + D F LHG Sbjct: 13 VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++ + G+P P + + DS Sbjct: 73 RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPT-PRYVELKADSDS 131 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ P ++KP GS+LG+ +K+ + +S ++ +L E+++ G+EL Sbjct: 132 GKVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAYALASKYDR--SVLAEEFIKGMEL 189 Query: 178 TCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++ +L + I P ++ Y Y KY + + ++ P + + +++++ A Sbjct: 190 TCAILELDGKPQTLPLIRIIAPDAN-YDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALK 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++QA+GCRG R D + + F LE+N PGMT S+ P A AG S+ +L L ++ Sbjct: 249 SYQALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLL 308 Query: 294 EDAS 297 + A+ Sbjct: 309 QSAT 312 >gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa] Length = 326 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG AL G D +R +G L D F LH Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLG-ELKKEGFDRCFIALH 74 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 G +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV T Sbjct: 75 GRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGET 134 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GS++G+ + + + +S ++ ++L E++++G E Sbjct: 135 RAALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLASRYD--PEVLCEEFIEGDET 192 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G +L V I P+ + Y Y+ KY + ++ + P+ +P + E++R+ Sbjct: 193 TCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVR 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 252 AFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGIL 311 Query: 294 EDAS 297 A+ Sbjct: 312 ASAA 315 >gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1] gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1] Length = 304 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P VC + Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 125 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 176 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 232 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ +LA A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 233 EIAQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 292 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 293 DDLVWRILE 301 >gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC] gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC] gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] Length = 322 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 164/307 (53%), Gaps = 17/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D + L F LHG Sbjct: 16 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV+ + Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 Q + P ++KP + GS++G+ + +Q+ L + H ++L EQ++DG Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQFIDG 189 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E TC V+G +L V I P+ + Y Y+ KY + + + P+ +P +E++R+ Sbjct: 190 DETTCPVLGQGDAAQALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIRRI 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L Sbjct: 249 VVQAYRTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCL 308 Query: 291 WMVEDAS 297 ++ AS Sbjct: 309 RILASAS 315 >gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 305 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 171/301 (56%), Gaps = 17/301 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +G +D + L D A+ LHG Sbjct: 4 IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SGI++SA+S+DK R+K + S +PV P + + + + S Sbjct: 64 KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDI-S 122 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q+ + P VIKP GSS+GI ++ Q + +D + ++++N+ ++IE+ Sbjct: 123 QYTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHY-QDLLIDSI-NAAFNYSSDIIIEK 180 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++G E T ++ L +I + K+ FY Y KY ++ ++ P+++ KE++ + Sbjct: 181 FIEGREYTVSILNKKILPPVKI-ITKNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNI 239 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A + +GC+G R D + D ++ FW LE+N PGMT S+ P A G SF EL+ Sbjct: 240 AETAWRTLGCKGCGRIDVILD--NKNKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELV 297 Query: 290 L 290 L Sbjct: 298 L 298 >gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] Length = 326 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG AL G D +R +G L D F LH Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLG-ELKKEGFDRCFIALH 74 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 G +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV T Sbjct: 75 GRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGET 134 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GS++G+ + + + +S ++ ++L E++++G E Sbjct: 135 RAALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLASRYD--PEVLCEEFIEGDET 192 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G +L V I P+ + Y Y+ KY + ++ + P+ +P + E++R+ Sbjct: 193 TCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVR 251 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 252 AFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGIL 311 Query: 294 EDAS 297 A+ Sbjct: 312 ASAA 315 >gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] Length = 307 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 16/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG A L + G +D D+SV + D AF LH Sbjct: 16 VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLKGF---DAAFIALH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R D Sbjct: 73 GRGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRDEAD 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P ++KP GSS+G+ + + L+ + ++ +L+E +V+G E T Sbjct: 133 ----LGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAEKFDQ--DVLVEAWVNGPEYTV 186 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L + P + FY +E KY S ++ ++ PA + + +++LA A + G Sbjct: 187 AVLGDEALPAIRLQTPHA-FYDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAG 245 Query: 240 CRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG R D + D + W LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 246 CRGWGRVDVMRDAQGQ---WQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 303 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 166/299 (55%), Gaps = 11/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 GE+G++Q LE + IPYT G++ASA+++DK R+K + + +P ++V R +D Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S+ +I+ P +KP GSS+G+ +K +Q +P + +L+E ++ G Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLP---AVEEALKFDSIVLVEAFLAGK 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E + V+ L +I +P+ +FY Y KY S N+ +++PA + D EV L A+ Sbjct: 185 EYSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E Sbjct: 243 EVVGCRGWSRIDVMEDA-NGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300 >gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] Length = 312 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 165/310 (53%), Gaps = 31/310 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------DL 53 +AVL+GG S EREVSL SG A +AL+ G D KP D Sbjct: 13 VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFD---------PRDKPLHDLEVFDR 63 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 F LHG +GEDG +Q LE+L IPYT SG++ASA+ MDK R+K + + V + P + Sbjct: 64 VFINLHGRYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNV-ITPDFEL 122 Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-E 169 T D + + P +KP GSSLGI +K+ + ++ D L+I E Sbjct: 123 VTATSDFAAIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA---EADPLVIAE 179 Query: 170 QYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++++G E T G++GD +L + I VPK++FY +E KY ++ ++ P + + Sbjct: 180 KFINGGEYTVGIIGDGKGGYQALPIIRI-VPKNEFYDFEAKYLRDDTEYLCPCGLSAEKE 238 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++Q+ A A + IGCRG R DFL D F LE+N PGMT S+ P A AG S Sbjct: 239 AQIQQEALQAFRTIGCRGWGRVDFLMDDAGNHYF-LEVNTSPGMTDHSLVPMAAKAAGIS 297 Query: 285 FRELLLWMVE 294 F +L++ ++E Sbjct: 298 FEQLVVRILE 307 >gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] Length = 322 Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 15/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A++ GG S EREVSL+ L+ + VS+ D + + A D AF +LH Sbjct: 11 IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFT 117 G GEDG +Q L+LL IPY SG+L SAL+MDK +K+ + +PV +I F Sbjct: 71 GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S+ LI P V+KP GSS+GI + ++ + + + + G +++EQ++ G Sbjct: 131 Y-SEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAG-AIMVEQFIKG 188 Query: 175 IELTCGVMGD---ASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ELTC V+G+ +L V EI VP K F+ YE KY S + PA I + ++VQ Sbjct: 189 RELTCAVLGNDDLQALPVLEI-VPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQD 247 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AHQA+ RG SR+DF++ K++ LE N PGMT SI P+ AA G F LL Sbjct: 248 HAIRAHQALRLRGYSRTDFIYGE-DGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLL 306 Query: 290 LWMVE 294 ++E Sbjct: 307 DTLIE 311 >gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355] Length = 304 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 168/307 (54%), Gaps = 23/307 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL I YT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170 D+ + + P +KP GSS+G++ +K+ + L LQ +++ E+ Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 ++ G E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R Sbjct: 177 FIGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRE 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L Sbjct: 236 LAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLC 294 Query: 290 LWMVEDA 296 + +++ A Sbjct: 295 IEILKTA 301 >gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As] Length = 378 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 9/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + P + Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ ++ ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARFD--SRVLVEQFIEGDEVT 192 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L + I P + Y YE KY S ++ ++ P+++P D +Q L + Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGN-YDYEHKYFSDDTRYICPSELPADEEARIQDLVLRS 251 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCL 307 >gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] Length = 312 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 174/307 (56%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+ +AL+ G+ + D+ L L + DLAF LHG Sbjct: 7 IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIANRDLLELKNF--DLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q LELL+IPYT G+++S++ M+K+ SK++ G+P +V + Sbjct: 65 KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P ++KP + GS++G+ + + +S ++ +++L+E+ ++G ELT Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESIKFD--EEMLVEKCIEGRELT 182 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G + +L + EI P + Y YE KY+ ++ ++ PAK+ ++ + ++ + A Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGN-YDYEQKYTRDDTQYICPAKLDENLARNIENICIKA 241 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++ C+G SR D + D W LEIN PGMT S+ P A G S+ ++ ++ Sbjct: 242 YDSLECQGWSRVDVMLD--KNNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEIL 299 Query: 294 EDASCLR 300 + A CL+ Sbjct: 300 KTA-CLK 305 >gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2] Length = 319 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 166/303 (54%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++L N Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSR 315 Query: 298 CLR 300 R Sbjct: 316 EAR 318 >gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 320 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P VC + Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ +LA A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 249 EIAQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 309 DDLVWRILE 317 >gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 311 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/293 (36%), Positives = 162/293 (55%), Gaps = 14/293 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVLMGG S+ERE+SL SG+A AL G +D + + LA L D AF LH Sbjct: 12 VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVD---TAQVALAELTGFDRAFIALH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG++Q LE L +PYT SG+L A+ MDK R+K + +PV P L+ R + Sbjct: 69 GRGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALL-RPETN 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q LI P +IKP GSS+G+ +++ + + +++ ++ D +L E++++G E Sbjct: 128 RQALIGSVGLPLMIKPAHEGSSIGMAKVERPEELEAARAEAARYD--DLVLAERWIEGGE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++G+ +L + P+ FY +E KY S ++ + PA + +++++LA A + Sbjct: 186 YTVAILGEEALPAIRLETPRG-FYDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFR 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G G R DF+ D R FW LEIN PGMT S+ P A G F EL Sbjct: 245 VAGASGWGRVDFMRDRQGR--FWLLEINTIPGMTDHSLVPMAARAVGIDFDEL 295 >gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] Length = 319 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D+ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 RDAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + +E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 306 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L ++G ID +L F LHG Sbjct: 5 VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V + G+PV P + ++R ++ Sbjct: 65 RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124 Query: 120 -SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 Q ++ P ++KP + GSS+G+ + ++ + L LQ + H D +LIE++ Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKEL-LPALQ-EGFRHDDNVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G + I P FY Y+ KY S + + P+ + +++ LA Sbjct: 183 LSGPEYTVAIVGSQVMPSIRIQ-PAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+ C G R D + D LE+N PGMT S+ P A +AG SF +L+ Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300 Query: 292 MVE 294 ++E Sbjct: 301 ILE 303 >gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] Length = 369 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W + +L+IE++V G E + GV+ +L + Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 258 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 318 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361 >gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] Length = 360 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 163/290 (56%), Gaps = 31/290 (10%) Query: 17 SSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72 SS +A A AL E+A K +D R++G+ ++AF LHG +GEDG +Q L Sbjct: 70 SSPEAAAMALDRMVEEAEQKPFNLDF-RAIGI-------EVAFLTLHGTYGEDGRIQGFL 121 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISP---- 126 + IPYT G+LASAL+MDK +K V+ G+ V PSI L + D++ + S Sbjct: 122 DTCNIPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEK 181 Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P+ +KP GSS+GI + + +P L + S + ++++E+ + G E+ V+G Sbjct: 182 FIYPFFVKPANLGSSIGISKVHHREQLPAALKSACSLD--SKIVVEKAITGREIEVAVLG 239 Query: 184 DASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D E++V P SDFY Y KY ++ +PA+IP ++ EV+ +A A++A+ Sbjct: 240 N---DEPEVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKAL 296 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 GCRG+SR DF D + E+N PG T +S+FP + A +G+SF EL Sbjct: 297 GCRGMSRIDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPEL 346 >gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 383 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W + +L+IE++V G E + GV+ +L + Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 258 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 318 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361 >gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] Length = 304 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 158/294 (53%), Gaps = 5/294 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 ++ GG SSEREVSL+ + AL G V+ D+ + +L + D A LHG+ Sbjct: 5 LIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120 GEDGLVQA+LE + PY SG S L+++K +KQ+ G+P L R Sbjct: 65 PGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAEGW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +K GGSSL + Q LD + + G+ +LIE + G E+TCG Sbjct: 125 EPRLPWPLFVKTTTGGSSLRLGRATNRQE--LDAIMDEIFAAGEGVLIEPQLPGKEITCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ ++ I D++ YE KY++ + + PA + + EVQRLA AH+A+G Sbjct: 183 ILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G SR+DF+ P + LE+N PGMTP S+ P+ AA G F +LL ++E Sbjct: 243 KGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIE 295 >gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629] Length = 351 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W + +L+IE++V G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 176/311 (56%), Gaps = 19/311 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVL----AHLKPD 52 +AV+ GG + E EVS+ S K+ + L+ ++ + +D+ S G +L AH D Sbjct: 5 VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG VQ +LEL ++PY +G+L SA+SMDK K+V +P+ + Sbjct: 65 VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124 Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 V R T +D+ + P +KP GSS+GI +Q L+ S + + ++++E Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQE--LEAAFSLAKQYDRKIIVE 182 Query: 170 QYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 + ++G EL C V+G+ ASL EI +P +FY YE KY + +PA +P + Sbjct: 183 RGIEGRELECSVLGNEAPMASLPC-EI-LPSREFYDYEDKYLLDMARTQVPADLPGERTD 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E++RLA ++A+ C G++R DF + + +++ EIN PG T +S++P+M ++G F Sbjct: 241 EIRRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPF 300 Query: 286 RELLLWMVEDA 296 LL ++E A Sbjct: 301 CTLLDQLIEFA 311 >gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110] gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110] Length = 323 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL SG AL G D + L F LHG Sbjct: 12 VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P P + F S Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPT-PRYVRLAFDQQS 130 Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP + GSS+G+ ++ + + S+ ++ +L E++++ Sbjct: 131 REQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSARYDA--DVLCEEFIE 188 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+TC V+G +L V IA P+ Y Y+ KY + + + P+ +P E+QR Sbjct: 189 GEEVTCAVLGQGLDARALPVVRIAAPEG-AYDYQNKYFTDDVKYHCPSGLPEAEEHEIQR 247 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + A+ +GCRG R+D + RK F LE+N PGMT S+ P A +G ++ +L Sbjct: 248 ITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLC 307 Query: 290 LWMVEDAS 297 L ++ AS Sbjct: 308 LRVLASAS 315 >gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] Length = 313 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G + EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1] Length = 303 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ GL+ A D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMD 119 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ + P + L R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGI-LTPDWAFLAARPAAD 123 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +KP GGSSL + + + + + L + + H + ++E + G+E+TC Sbjct: 124 WEPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTC 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 182 GVLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 242 LRGYSRADYILRD-DGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295 >gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 325 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 21/310 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVLMGG S+ERE+SL SG AL G D +R +G LK F Sbjct: 11 VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLG----ELKTGGFARCFI 66 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ LELL IPYT SG++AS++++DK+ +K+++ S +P +L+ R Sbjct: 67 ALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRG 126 Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P ++KP + GSSLG+ + + ++ + + + +L EQ Sbjct: 127 GYSPAQVDAIVDTLGLPLIVKPAREGSSLGLSKVTERAAMAAAVALAEKMDA--DILCEQ 184 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G E+TC V+G +L V I P+ + Y Y+ KY + + +++P +P Sbjct: 185 FISGDEVTCPVLGTGEQARALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPCGLPAGEEAA 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +Q+L A + + CRG +R+D + D +RK + LEIN PGMT S+ P A AG S+ Sbjct: 244 IQQLVLQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYE 303 Query: 287 ELLLWMVEDA 296 L + +++ A Sbjct: 304 ALCVEVLKTA 313 >gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 302 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 163/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVME--GLKYYEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294 >gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] Length = 310 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 12/291 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +HG Sbjct: 8 VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N ++ Sbjct: 68 YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLESAE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I + P V+K GSS+G+ +++ + L+ + + + L++EQ++DG Sbjct: 128 AIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ L Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + G+ R D + D + K++ LE N PGMT S+ P+ A G F Sbjct: 245 YREVQGSGVVRVDVMTDH-ADKMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294 >gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF] gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii] Length = 308 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K++Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ GYSF EL + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILE 301 >gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] Length = 304 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 157/302 (51%), Gaps = 16/302 (5%) Query: 1 MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNV 57 M VL+ GG SSEREVSLS AL G KV D+ G V A D AF Sbjct: 1 MKVLLVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLN 60 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSIL 112 LHG GEDGL QA+L+ +PY SG S L+++K SKQ+ G+ P+ Sbjct: 61 LHGAPGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPP 120 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + F D PP+ +KP GGSS+ + +++ +P L + ++ GD L+E+ + Sbjct: 121 GDGFVPD----FGPPWFVKPTSGGSSVSMTLVRDPADLPEAL--ARAFASGDTALVEEGL 174 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G ELTC V+GD +L I +F+ Y KY + + PA +P + E+ R++ Sbjct: 175 AGPELTCAVLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISL 234 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+G G SR+DF+ LE+N PGMT S+ P+ A AG SF +L+ + Sbjct: 235 AAHKALGLSGYSRADFIHT--ESGPMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARL 292 Query: 293 VE 294 +E Sbjct: 293 ME 294 >gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct] Length = 320 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG VQ +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + +E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] Length = 313 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L S + H +++E+ Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G + EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] Length = 298 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 160/295 (54%), Gaps = 16/295 (5%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72 +SL+S A ALE AG +V ID++ + + LA + FNV HG FGEDG++QA L Sbjct: 1 MSLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACL 60 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQ 121 E +PYT SG+LASAL+MDK RSK++ + G+P + R + D Sbjct: 61 EASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADEL 120 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+ P +KP + GSSLGI ++ + + ++ + + ++L+E+ VDG+E T G+ Sbjct: 121 HIARWPVFVKPNRAGSSLGISRVENAAGLAEAMAKAFAVD--SEILVEEAVDGLEATVGI 178 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L I P FY YE KY + ++ ++LP+ +P + +Q LA A + +G R Sbjct: 179 VAGRTLPPIVIR-PHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGR 237 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D + LE+N PGMT S+ P A G++ +L L +V A Sbjct: 238 DWGRVDFLVDAEG-GIHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291 >gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 313 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 165/305 (54%), Gaps = 15/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV++GG S+E +S +G A A+AL++ G+K ++ V + L K D+ FN LH Sbjct: 10 IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q E+ IPYT G++ASA+ M+K+ SK + G+P P F Sbjct: 70 GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAP--FAYYFAAQ 127 Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S I S P VIK GSS+G +++++ ++P + ++ S++ + ++ EQ+ Sbjct: 128 SPAAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKEAFSYS--NSIIAEQF 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +DG E T VM D + V +I V + Y Y KY+ + H+ PA + +++Q LA Sbjct: 186 IDGDEFTVAVMDDMAFPVIQI-VSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLA 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G++R D + D R F LEIN PGMT S+ P+ A G SF +L Sbjct: 245 LQVFHLCHASGVARVDMMTDAAGRP-FVLEINTVPGMTETSLVPDAARAMGMSFADLCEK 303 Query: 292 MVEDA 296 ++++A Sbjct: 304 ILQEA 308 >gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] Length = 312 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 166/298 (55%), Gaps = 9/298 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S+E+E+SL SGKA +AL + G ID + + D +N LHG Sbjct: 11 VLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHGRG 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG++QA L+LL +PYT SG++ASA++MDK+R+K + + PV ++N + + Sbjct: 71 GEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTIEQ 130 Query: 123 L------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ ++KP++ GSS+G+ K D + L ++ + ++++EQ++DG E Sbjct: 131 AEDVLADMNDCVMVKPIREGSSVGM--AKADNAKALVEAVENAKQYDREVMLEQWIDGEE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ +L + P + FY ++ KY S ++ +V P+ + + E+ L+ A Sbjct: 189 YTVSILNGKALPSIRVKTPNT-FYDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAAFY 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G R D + + + LE+N PGMT S+ P+ A +G SF EL++ ++E Sbjct: 248 ALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305 >gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1] Length = 291 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 155/291 (53%), Gaps = 13/291 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A +GC+G R D + D + + LE N PGMT S+ P A AG Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAG 291 >gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] Length = 310 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG ++EREVSL SG A AL+ G IDV S LA K D FN++HG Sbjct: 15 VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K G+ V P +L++ + Sbjct: 75 RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGL-VTPKWCLLIDESDL 133 Query: 119 DSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P ++KP + GSS+G+ + L ++ + + E +V G E Sbjct: 134 DGCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRC--DVYAEAWVTGKEY 191 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ +L V + P + FY YE KY + + + P + D ++ LA A + Sbjct: 192 TVAVLDGEALPVIRLETPNT-FYDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKV 250 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +G R D D L + +E+N PGMT S+ P A AG F E L+W + + S Sbjct: 251 VGVKGWGRVDVFIDDLGQYQL-IEVNTVPGMTDHSLVPMAARQAGMDFEE-LVWRILETS 308 Query: 298 C 298 C Sbjct: 309 C 309 >gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 302 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 167/297 (56%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V +D Sbjct: 63 KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + I P +KP GGSS+ + K + I +++ ++ ++++IE +V G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGLKYD--EEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIE 294 >gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 157/297 (52%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ ++KP GSS+G+ Q + L S+++ Q+L+EQ++ G E Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD L V E+ P FY Y+ KY + + + PA + + +Q +A A Sbjct: 189 TITVLGDEVLPVIEMTTPNG-FYDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDQ-QGNFYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILE 303 >gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] Length = 303 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/301 (34%), Positives = 161/301 (53%), Gaps = 12/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S+EREVSL SG AL+ G D L + F LHG Sbjct: 7 VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116 FGEDG +Q LE + +PYT G++ASA+ MDK R+K + G+P+ +L+ N Sbjct: 67 PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI 175 +++Q + P +KP GSS+G+ +K + ++ + D+L+I E +V G Sbjct: 127 AVEAQ--LGLPLFVKPATEGSSIGVTKVKHPGELRAAYEEARRY---DKLVIAEAFVGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC ++GD +L +I P ++FY Y+ KY ++ + P+ + ++ + LA A Sbjct: 182 EYTCAIIGDKALPTIKIE-PATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAF 240 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +G RG R DFL D + ++ LE+N PGMT S+ P A G S+ EL L +++ Sbjct: 241 KVLGGRGWGRVDFLMDE-AGGIYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDM 299 Query: 296 A 296 A Sbjct: 300 A 300 >gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 161/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A AL +ID R++ LA K D AF LHG Sbjct: 7 VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE IPYT SG+ ASA+ MDK RSK + +P LV + Sbjct: 67 VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P ++KP GSS+GI + + + + + G +L EQ+V+G+E T Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAK--QTGSSVLAEQFVEGLEFT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ +L ++ +DFY Y KY ++ +++P + + +Q LA A+Q++ Sbjct: 185 VGILDGKALPAIQLKAA-NDFYDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G R D + D ++ FWL E+N PGMT S+ P A G SF L+L ++E Sbjct: 244 DCHGWGRVDVMQD--AKGDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILE 298 >gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] Length = 313 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L S + H +++E+ Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166] Length = 314 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P P V +D Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPT-PRHAVLASEVDC 134 Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q ++ P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E Sbjct: 135 QAAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASAYDA--QVLVEQWIHGPEF 192 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P + FY Y+ KY + ++ + +P + +E++ L+ A +A Sbjct: 193 TVAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEA 251 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G RG +R D + D + FW LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 252 VGIRGWARVDVMQD--AEGNFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] Length = 308 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILE 301 >gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2] gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2] Length = 307 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 16/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG A + L + G +D D+SV + D AF LH Sbjct: 16 VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLRGF---DAAFIALH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R Sbjct: 73 GRGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGR---- 128 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP GSS+G+ + + L+ + ++ +L+E +V+G E T Sbjct: 129 EEAELGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAEKFDQ--DVLVEAWVNGPEYTV 186 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L + P FY +E KY S ++ ++ PA + + ++ LA A + G Sbjct: 187 AVLGDEALPAIRLQTPHV-FYDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAG 245 Query: 240 CRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG R D + D + W LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 246 CRGWGRVDVMRDEQGQ---WQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15] Length = 323 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL AG +DV + + + D F LHG Sbjct: 22 VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P P + Sbjct: 82 RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPT-PKFRTMSGADQA 140 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIE 176 + +I P +KP + GSS+G I+K + + D L L+E++++G E Sbjct: 141 EQIIDELRAPLSVKPSREGSSIG---IRKVHTAAELAHAYEAAAALDNLVLVEEWIEGPE 197 Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ D +L ++ FY YE KY + ++ + +P + + +Q LA A Sbjct: 198 FTVSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAF 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCR R D + D S FW LE+N PGMT S+ P A AG SF EL++ +++ Sbjct: 258 RVVGCRTWGRVDIMQD--SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILK 315 Query: 295 DA 296 D+ Sbjct: 316 DS 317 >gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 308 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301 >gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 301 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 171/299 (57%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL+SGK+ + ++V I +D+ +V D A LHG Sbjct: 3 IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA+L+ L IPY+ G L+SA+ MDK +K ++ + + P I + ++ Sbjct: 63 QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D+ + P V+KP GGSS+ ++K+++ I + + W+ +++IE+++ G E+ Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKWDS--EVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY + V+ ++ ++++EV+++A ++A Sbjct: 181 TCPVYGDRMLPVIAIK-PKAEFFDFASKYQDGGAEEVV-VELDKNLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LE+N PGMT S+ P+ AA F +L+ ++ED+ Sbjct: 239 LKCEVYSRVDMIV-TTDGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296 >gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] Length = 301 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVL GG S+EREVSL+SG +AL+ G D L LK D AF LH Sbjct: 7 VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQP---LDALKGYDRAFIALH 63 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFT 117 G GEDG +Q LE++ IPYT SG+LASAL+MDK R+K + + G +P + + Sbjct: 64 GRHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDF 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + + P +KP + GSS+G+ +K+ ++ +++ H ++ E+ V G E Sbjct: 124 ADIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEY 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++GD ++ + +I P +++Y YE KY+ ++ ++ P +P E+++ A A + Sbjct: 182 TVGIIGDEAMPIIKIE-PATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRI 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G RG R DFL D K ++LE+N PGMT S+ P A G + L+ ++E A+ Sbjct: 241 LGGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299 >gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 295 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 164/298 (55%), Gaps = 15/298 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA +AL+ G+ D + + + + PDLAF L Sbjct: 8 IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q++LE L I YT S SA+ MDK+ +K+++SS +PV + F+ Sbjct: 68 HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQT-----FSK 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P V+KP + GSS+G+ + + + L + + ++IEQ++ G E+T Sbjct: 123 DN---IKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDYKN---IIIEQFIKGREIT 176 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + EI V FY Y+ KY S + ++ PA+I + +++ ++A + Sbjct: 177 VSILNGKILPIVEIVVDDG-FYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D + D + + LEIN PGMT S+ P+ A G SF EL+ ++E A Sbjct: 236 NCKGAVRIDMIIDK-NNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292 >gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE] gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056] gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE] gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] Length = 308 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 161/294 (54%), Gaps = 14/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D +RSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K++Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDEL 295 >gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] Length = 319 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + +E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAKGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] Length = 325 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 162/299 (54%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL+ AG D+ + + D F LHG Sbjct: 25 VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P P+ ++ Sbjct: 85 RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPT-PAFRAMTSVGEA 143 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +++ P +KP GSS+GI + + ++ + D +L+EQ+++G E Sbjct: 144 EGIVAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLD--DLVLVEQWIEGPEF 201 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D +L ++ + FY Y+ KY + ++ + +P + D +Q LA A + Sbjct: 202 TVSLLQDKALPAIGLSTDHA-FYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRV 260 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GCR R D + D FW LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 261 LGCRTWGRVDIMQDRAGE--FWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317 >gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] Length = 307 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 165/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AV+ GG S+EREVSL+SG+A AL G D + ++ L+ D FNVLH Sbjct: 13 VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETD---ISKLRDYDRVFNVLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116 G FGEDG +Q +L+ IPYT G+LASA++MDK R++ V + +P P ++++ F Sbjct: 70 GTFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDF 129 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 T Q L P +V KP GSS+G+ IK+ + Q + HG +L E+ + G E Sbjct: 130 TAIEQQLGLPLFV-KPAAEGSSVGVFKIKEVGELAKTYPQLKQY-HG-AILAEKAITGGE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 C ++GD L I +P ++FY YE KY+ ++ + P+ + + +Q++A A Sbjct: 187 YACSILGDEVLPSIRI-IPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFA 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG +G SR DFL D ++ LE+N PGMT S+ P A G F L + ++E Sbjct: 246 AIGGKGWSRVDFLRDD-EGTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILE 302 >gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] Length = 369 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/259 (37%), Positives = 148/259 (57%), Gaps = 23/259 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG++GEDG +Q L+ IPYT G+LASA++MDK +K V+ G+ V P I Sbjct: 101 DVAFLVLHGSYGEDGRIQGFLDTCAIPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGI 160 Query: 112 LVNRFTMDSQHLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + + S +L P P IKP GSS+GI + +PL L + Sbjct: 161 TL----LSSDYLADPDSFHTRIDREFEYPLFIKPANLGSSVGISKVHNPAELPLALKTAC 216 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 + + ++L+E+ + G E+ V+G+A +V+ EI P SDFY YE KY ++ + Sbjct: 217 TLD--TKILVEKAIKGREIEVAVLGNAQPEVSVCGEIE-PGSDFYDYEDKYIHNSAKTFI 273 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP + ++V+ LA A +A+GCRG+SR DF D S+ + E+N PG T +S++P Sbjct: 274 PARIPSVLQEKVRELALRAFKALGCRGMSRIDFFVDEESKSIILNEVNTIPGFTDISMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ +G F EL ++E Sbjct: 334 KLMEASGIPFPELATRLLE 352 >gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] Length = 308 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D ++SV ++A+ D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVAY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + + D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDS-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LNSVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL L ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILE 301 >gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 302 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 163/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ ++ ++++IE ++ G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGLKYD--EEVIIESFIKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGEFFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294 >gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2] Length = 308 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301 >gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] Length = 351 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 171/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G + AL + G V +DV D+ L Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62 Query: 46 -----LAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + PDLA F LHG GE+G +QA Sbjct: 63 VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129 +L I YT +G L+SAL+MDK +KQ+ + G+P I + NR + + P V Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D L+IE+YV+G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVIDYKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++P +I +++Q A + +G SRSDFL Sbjct: 241 IEIA-PIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +++ LE N PGMTP S+ P+ A G +F +L ++E Sbjct: 300 LNK-NNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343 >gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1] gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1] Length = 319 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + +E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 319 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 163/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D+ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 RDAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + +E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] Length = 316 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 161/292 (55%), Gaps = 10/292 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S+ERE+SL SG A +L G + IDVD+ V L+ + AF LHG Sbjct: 15 VLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHGRG 74 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++ +P ++ R T + Sbjct: 75 GEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDT--NPA 132 Query: 123 LISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 LI+ P ++KP + GSSLG++ ++ +++ ++ ++ + E+++ G E T Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVIFDTA--VFAERWLPGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + + P+ FY +E KY + + + P + +++Q LA A QA+ Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G G R D D + + LEIN PGMT S+ P A AG F E++L Sbjct: 250 GASGWGRVDLRCDEKAHP-YLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVL 300 >gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 306 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL+++G D L L + F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ ++ ++KP GSS+G+ Q + L ++++ +Q+L+EQ++ G E Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDAL--ANAFKFDNQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P FY Y+ KY S + + PA + K +Q ++ A Sbjct: 189 TITVLGDDVQPVIEMTTPNG-FYDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R D + D + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILE 303 >gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 12/291 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +HG Sbjct: 8 VLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N ++ Sbjct: 68 YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLESAE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I + P V+K GSS+G+ +++++ L+ + + + L++EQ++DG Sbjct: 128 AIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQ--LEAAVTEALKYDPILVVEQFLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ L Sbjct: 186 REFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + G+ R D + D + K++ LE N PGMT S+ P+ A G F Sbjct: 245 YREVQGSGVIRVDIMTDH-ADKMYVLEYNTVPGMTATSLVPKAANEMGIDF 294 >gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] Length = 310 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 12/291 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +HG Sbjct: 8 VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N ++ Sbjct: 68 YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLESAE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I + P V+K GSS+G+ +++ + L+ + + + L++EQ++DG Sbjct: 128 AIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L V EI P S Y Y KY+ + +++PA I ++ E+QR+ L Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + G+ R D + D + ++ LE N PGMT S+ P+ A G F Sbjct: 245 YREVQGSGVIRVDIMTDH-ADNMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294 >gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 302 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 163/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ ++ ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGLKYD--EEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294 >gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] Length = 315 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 156/285 (54%), Gaps = 10/285 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 MAVL GG S EREVSLSS K +AL D G++ +D LK D+AFN+ H Sbjct: 12 MAVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWT--GLKGVDIAFNIQH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG+ Q +L L + T S +L SAL+MDK+RSKQ+ + G+P LVN T D Sbjct: 70 GVGGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHT-D 128 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +Q L++ +KP GSSLG+ + +S L +S++ GDQ+L E+++DG E Sbjct: 129 AQALLADWGAAFVKPCSEGSSLGMTRVDSPESF-LQACESAA-VFGDQILAERFIDGPEY 186 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I + +FY YE KY + + + +P + D + LA A A Sbjct: 187 TVAILGDRALPPIHIESAR-EFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +GC R D + D S K LE+N PGMT S+ P A AG Sbjct: 246 LGCSVWGRVDLMRDS-SGKFQLLEVNTVPGMTDHSLVPMAATAAG 289 >gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] Length = 309 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL SG A AL +G D +RSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTELVGY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P ++++ + D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQES-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +++ P +IKP+ GSS+G+ ++K + + + +++ H ++ E+++ G E Sbjct: 126 LAEVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + + +++Q L A Sbjct: 184 FTISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 244 QAVGASGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILE 301 >gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10] gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1] gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92] gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10] gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str. 91001] gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia pseudotuberculosis IP 32953] gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92] gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004] gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038] gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 306 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 163/298 (54%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR T Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124 Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + L++ P ++KP GSS+G+ K D + L ++ H +LIE++ Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGM--SKVDHASELQKALVEAFQHDSDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LSGPEFTVAILGDEVLPSIRIQ-PPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ A+ C G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 298 >gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] Length = 310 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 12/291 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +HG Sbjct: 8 VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N ++ Sbjct: 68 YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLESAE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I + P V+K GSS+G+ +++ + L+ + + + L++EQ++DG Sbjct: 128 AIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L V EI P S Y Y KY+ + +++PA I ++ E+QR+ L Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + G+ R D + D + ++ LE N PGMT S+ P+ A G F Sbjct: 245 YREVQGSGVIRVDIMTDH-ADNMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294 >gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] Length = 331 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 11/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG AL D + L F LHG Sbjct: 16 VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL I YT SG++AS++++DK SK++ S G+P LV Sbjct: 76 RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q L + P ++KP + GS++G+ + + Q L ++ ++ ++L EQ++ G ELT Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAARYD--PEVLCEQFIAGDELT 193 Query: 179 CGVMGDA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 C V+ +L + I P + Y Y+ KY S + + P+ +P + + RLA Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGN-YDYQHKYFSDATRYHCPSGLPEAQERAIGRLAE 252 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A A+GCRG +R+D + ++ F LEIN PGMT S+ P A AG S+ +L L + Sbjct: 253 QAFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRL 312 Query: 293 VEDAS 297 + A+ Sbjct: 313 LAMAT 317 >gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 316 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 170/297 (57%), Gaps = 12/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 + V+MGGISSEREVSL +G+ + L+ + ++ I + + L+ + D A L Sbjct: 3 IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + G+ P+ L + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQT-PAGLYWKDVY 121 Query: 119 DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D Q + + P ++KP GGSS+G+ +++ ++ + + ++S + G +LIE Y+ G E Sbjct: 122 DPQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYLDQG--ILIEPYLKGTE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LTC ++ L + I S+++ Y KY + + ++P DI + V+ A ++Q Sbjct: 180 LTCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEEKV-IELPPDIQQRVREAALASYQ 238 Query: 237 AIGCRGISRSDFLF---DPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C+ +R D + PL + + + LE+N PGMT S+FP+ AA AG +F ++L Sbjct: 239 LLQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVL 295 >gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] Length = 313 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ER++SL SG A +AL G +D+ R +A D F LHG Sbjct: 12 VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 GEDG +Q L++ +PYT +G+L SAL MDK+ K++ + +P P +L F + Sbjct: 72 ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP +GGSSLGI + + +P +++ G Q+ EQ++ G E T Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPA-AFEAARVQPG-QVFAEQWITGREFT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK----EVQRLAFLA 234 V+G+ L V EI S FY Y KY + ++ ++ P P D+ + E+Q LA A Sbjct: 190 VAVLGNEPLPVIEIRA-ASGFYDYHAKYEADDTGYLCP---PPDLSRSAQLELQSLAIAA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R D L D F +E+N PGMT S+ P+ AA AG F EL L +++ Sbjct: 246 FAALEGCGWGRVDILQDEHGEN-FLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILD 304 >gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] Length = 305 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 167/297 (56%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL + D L D AF LHG Sbjct: 9 VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K + + G+P +L++ + Sbjct: 69 RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128 Query: 119 DSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + L+ P ++KP + GS++G+ V K+ +P L + + +L E+++ G EL Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAYELAA---QYDALVLAEEFIVGKEL 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++G+ L + I + + Y Y+ KY S ++ + P+ + ++ E+Q A A++ Sbjct: 186 TVAILGETPLPIVRIEI-TGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKV 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GC G R D + + + ++LE+N PGMT S+ P A AG SF +L++ +++ Sbjct: 245 LGCHGWGRVDLILTQ-TGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILD 300 >gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 289 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 155/285 (54%), Gaps = 13/285 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 1 MSLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISP---- 126 L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR T+ S L++ Sbjct: 61 FLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKL 120 Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P ++KP GSS+G+ K DQ+ L ++ H +LIE+++ G E T ++GD Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDQADQLHGALEEAFRHDSDVLIEKWLSGPEYTVAILGD 178 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L I P FY YE KY S + + P+ + ++ +++ L+ A+QA+GC G Sbjct: 179 NVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWG 237 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 238 RVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 281 >gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999] Length = 321 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 8/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L+GG S+EREVSL+SG+A A++ G + D + L + A +LHG Sbjct: 6 LAILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119 GEDG +Q LE L IPYT SG+L SA++MDK+ +K V +CG+P + ++D Sbjct: 66 RGGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVD 125 Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P ++KP GSS+G+ K + L +++ + +++LIEQY+ G Sbjct: 126 EAQTIMLNIGPDLMVKPSHEGSSIGM--SKTGTAEELISAVNTALTYDERVLIEQYIVGT 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++G+ +L + P FY YE KY + + + P+ + + + +L+ A Sbjct: 184 EYTVSILGENALPSISMVTPNI-FYDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAF 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A+ C G R D + D + + LE+N PGMT S+ P+ A AGY F EL+ Sbjct: 243 KAVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELV 296 >gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 310 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 12/291 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +HG Sbjct: 8 VLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIHGR 67 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N ++ Sbjct: 68 YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLESAE 127 Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +I + P V+K GSS+G+ +++++ L+ + + + L++EQ++DG Sbjct: 128 AIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQ--LEAAVTEALKYDPILVVEQFLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ L Sbjct: 186 REFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGELV 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + G+ R D + D + K++ LE N PGMT S+ P+ A G F Sbjct: 245 YREVQGSGVIRVDIMTDH-ADKMYVLEYNTVPGMTVTSLVPKAANEMGIDF 294 >gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 379 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L D FNVLHG Sbjct: 85 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQY--DRVFNVLHG 142 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P L+ T Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +++ P +IKP+ GSS+G+ + +P +++ GD ++ E+++ G E T Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELP--AAYATAVQCGDVVMAERWITGREFT 260 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A +A Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D FW LEIN PGMT S+ P A G F E L W + Sbjct: 321 VDAKGWGRIDAMQDEAGN--FWLLEINTVPGMTSHSLVPMAAKARGMDF-ESLCWHI 374 >gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] Length = 310 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV++GG S+ER VSL+SG A +AL G D RS+G +++ + D F LH Sbjct: 13 VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSG-EFDRVFIALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG +Q LELL IPYT SG++ASA+ MDK R+K + + G+P +++ + Sbjct: 72 GRYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDF 131 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P +KP + GSS+G+ K ++ L + H +L E+++DG E Sbjct: 132 AATEARLGLPIFVKPAREGSSIGM--SKVTEAGTLQAAYEKAAEHDALVLAEKFIDGAEF 189 Query: 178 TCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T G++GD++L + + + FY +E KY ++ + PA +P +++LA A + Sbjct: 190 TVGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFR 249 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G RG R D + D L + LE+N PGMT S+ P A AG F L + ++E Sbjct: 250 LLGGRGWGRVDLMTDRLGNP-YLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILE 306 >gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] Length = 314 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 171/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P P V +D Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPT-PRHAVLASEVDC 134 Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q ++ P ++KP GSS+G+ + + +S+++ Q+L+EQ++ G E Sbjct: 135 QAAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASAYDA--QVLVEQWIQGPEF 192 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ L + P + FY Y+ KY + ++ + +P + + ++ L+ A +A Sbjct: 193 TVAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEA 251 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G RG +R D + D + FW LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 252 VGIRGWARVDVMQD--AEGNFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424] gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus taiwanensis LMG 19424] Length = 327 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 169/304 (55%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + G+ P + D Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGL-ATPRFAMLHADTDF 135 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ P ++KP + GSS+G+ + + ++++ + + ++ E +VDG EL Sbjct: 136 DAVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFDKAAALD--NDVIAETFVDGAEL 193 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L V I P+++ Y Y+ KY + ++ ++ P+ + ++ ++VQ LA Sbjct: 194 TCPVVGEGDTAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQ 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GCRG +R+D + F LE+N PGMT S+ P A G S+ + +L ++ Sbjct: 253 AYRVLGCRGWARADVMLRA-DGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVL 311 Query: 294 EDAS 297 A+ Sbjct: 312 AAAT 315 >gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] Length = 321 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 165/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SGKA AL+ G D L K D F LHG Sbjct: 13 VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++ + G+P P + D Sbjct: 73 IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPT-PRYTELKANTDF 131 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ P ++KP GS+LG+ + D S + + ++ H +L E++++G+EL Sbjct: 132 NEVVAKLGLPLIVKPACEGSTLGLTRV-TDASQMKEAYELAA-THDQSVLAEEFIEGMEL 189 Query: 178 TCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+ +L + I P ++ Y Y+ KY S + ++ P + ++ K +Q+ Sbjct: 190 TCAVLERDGKPEALPMIRIIAPGAN-YDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQ 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++A+GCRG R D + K F LE+N PGMT S+ P A AG + +L + ++ Sbjct: 249 SYRALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLL 308 Query: 294 EDAS 297 A+ Sbjct: 309 AAAT 312 >gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN] gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN] Length = 313 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 167/304 (54%), Gaps = 19/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LAALKEEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + S+ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDK--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 V+ G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ Sbjct: 186 SVEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D F LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 LWMV 293 + ++ Sbjct: 304 VGVL 307 >gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 309 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 159/294 (54%), Gaps = 10/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG AL+ AG ID R V VL D FN+LHG Sbjct: 9 VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LEL+ +P T SG+L SA+SMDK+ +K++ G+P P V D Sbjct: 69 RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLP-TPDYQVLDGDTDW 127 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + S P ++KP GSS+G+ ++ +P ++++ G + E++V G E Sbjct: 128 VVVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAA--CGGPVFAERWVTGTEY 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ L + + P++ FY YE KY + + + +P + + + Q LA A +A Sbjct: 186 TAAILEGEPLPLIRLETPRA-FYDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEA 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +G RG R D + D + V WL E+N PGMT S+ P A AG F+ L+L Sbjct: 245 VGARGWGRVDLMVDRVG--VPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVL 296 >gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 165/303 (54%), Gaps = 21/303 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GGI SER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + V P I + + Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168 + + + P VIKP GSS+GI ++ DLL S ++N+ + ++I Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHP-----DLLIDSINLAFNYSNNIII 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T ++ L +I + K++FY Y KY ++ ++ P+ + +E++ Sbjct: 180 EKFLKGTEYTVSILNKKVLPPIKI-ITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELK 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++ +A ++GC+G R D + D ++ FW LEIN PGMT S+ P + SF Sbjct: 239 KIVEIAWNSLGCKGCGRIDAILD--NKDKFWLLEINTIPGMTHRSLVPMASKKYRISFVN 296 Query: 288 LLL 290 L+L Sbjct: 297 LIL 299 >gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] Length = 289 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 153/285 (53%), Gaps = 13/285 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 1 MSLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124 L +PYT SG++ASAL+MDK+R+K V + +P+ P + +NR T+ S+ L + Sbjct: 61 FLGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P ++KP GSS+G+ K D + L ++ H +LIE+++ G E T G++GD Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDHANELQGALVEAFRHDTDVLIEKWLSGPEFTVGILGD 178 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L I VP FY YE KY S + + P+ + ++ +++ LA A+QA+GC G Sbjct: 179 DVLPSIRIQVPGV-FYDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWG 237 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 238 RVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 281 >gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 310 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 170/307 (55%), Gaps = 29/307 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER++S+SSG A +L +G K D + L K D A+ LHG Sbjct: 5 VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K + S G+PV P + + + Sbjct: 65 KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124 Query: 116 ----------FTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGD 164 F +D P ++KP GSS+GI +V K+Q L ++N+ + Sbjct: 125 NLSSLLKKRFFKLDF------PLLVKPNNQGSSIGITLVYLKNQ---LKNAIEVAFNYSN 175 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 +L+EQ++ G E T ++ + L +I + K++FY + KY ++ ++ P+ + L Sbjct: 176 TILVEQFIKGTEYTVSILDEKILPSIQI-ITKNNFYDFASKYQLSSTQYLCPSGLNLKQE 234 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGY 283 K+++++A A +GC G R D + D S FW LEIN PGMT S+ P A G Sbjct: 235 KKLKKIAKKAWDTLGCNGCGRIDVILD--SNNKFWLLEINTIPGMTNRSLLPISANAIGM 292 Query: 284 SFRELLL 290 SF EL+L Sbjct: 293 SFDELVL 299 >gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 302 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V +D Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + I P +KP GGSS+ + K + I +++ ++ ++++IE +V G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGLKYD--EEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIE 294 >gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 318 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL SG+A SAL AG D S L K D +LHG Sbjct: 20 VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P + ++ ++ Sbjct: 80 RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + ++KP + GSS+G+ K + L ++ + D++L+EQ++ G Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGM--AKVSNAQQLAAAIQQAFEYDDKVLLEQFIQG 197 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ ++ ++ P+ DFY YE KY S + + P+ +P + + RLA A Sbjct: 198 SEYTVSLLNGEAMPSISMSTPR-DFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R DF+ D L + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 257 FDAVAGSGWGRVDFMQDMLG-QFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315 Query: 295 DA 296 A Sbjct: 316 TA 317 >gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] Length = 317 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 17/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG+ L DAG D LA LK + AFN Sbjct: 16 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERP---LAALKEEGFVRAFNA 72 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 73 LHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGD 132 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 133 DYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAVKYDR--IVVVEKS 190 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + GD L V I VP +FY Y KY + ++ +++P + D ++ L Sbjct: 191 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVL 249 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G S++EL++ Sbjct: 250 ARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELVV 308 Query: 291 WMV 293 ++ Sbjct: 309 GVL 311 >gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] Length = 1029 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSER +SL S +A A AL D G +V++ID+ D S+ + + DL F VLH Sbjct: 732 IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISKDI--DLVFPVLH 789 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ ++E PY I +S L +DK + + + G+PVC S+++ + Sbjct: 790 GEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEE 849 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I+ P V+KP + GSS+ + +++K+ + +DL ++ + D +L+E + GIE Sbjct: 850 ISQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDL----AFENDDTVLVESFFKGIEC 905 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T G++ +L V EI +P F+ Y+ KY+ + P +IP D+ + +++ + Sbjct: 906 TVGLIDGKALSVVEI-IPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEES 964 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + R + R D +++P S K LE N PG T S+ P+ A G SF EL + + Sbjct: 965 FKVLKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAK 1024 Query: 295 DA 296 A Sbjct: 1025 KA 1026 >gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] Length = 308 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ + D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 126 LDAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G R D + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 244 QAVGAESWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301 >gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] Length = 306 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/299 (37%), Positives = 155/299 (51%), Gaps = 8/299 (2%) Query: 1 MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNV 57 M VL+ GG SSEREVSLS AL+ G +V D+ D G V A D AF Sbjct: 1 MKVLLVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLN 60 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG GEDGL QA+L+ +PY +G S L+++K SKQ+ S G+P L Sbjct: 61 LHGAPGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPP 120 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGI 175 PP+ +KP GGSS+ + +++ +P L + GD LIE+ + G+ Sbjct: 121 PAGYAPAFPPPWFVKPNSGGSSVYMSLVRDPAELPAAL--EKIFATGDAALIEEGLCGGM 178 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELTC V+GD +L I +F+ Y KY + + PA IP + E+ RL+ AH Sbjct: 179 ELTCAVLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAH 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G G SR+DF+ + LE+N PGMTP S+ P A AG F +L+ ++E Sbjct: 239 AALGLTGYSRADFIHTD-KHGLMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLME 296 >gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 308 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 163/297 (54%), Gaps = 13/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+EREVSL+SG +AL G D +R + + + AF LH Sbjct: 9 VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLAGFAR---AFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG +Q LEL+ IPYT SG++ASAL MDK R+K + + G+PV P ++++ T Sbjct: 66 GRYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDL 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+GI +K+ L ++ + H ++ E+ + G E Sbjct: 126 AAVEAALGLPLFVKPACEGSSIGITKVKRPGE--LAAARAEAARHDSLVIAERAILGGEY 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++G+A+L + +I P ++FY YE KY ++ + P + E+++ A A + Sbjct: 184 TVAILGNAALPIIKIE-PSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRV 242 Query: 238 IGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +G RG R DFL D ++LE+N PGMT S+ P A AG S+ +L++ Sbjct: 243 LGGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVV 299 >gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] Length = 329 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/295 (33%), Positives = 161/295 (54%), Gaps = 13/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG AL G D L H F LHG Sbjct: 12 VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ + G+P + + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P ++KP + GSS+G+ + + + + S+ ++ +L E +++G Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSAGYDA--DVLCEAFIEG 189 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELTC V+G+ +L V I VP + Y Y+ KY + ++ P+ + ++ +E+QR+ Sbjct: 190 EELTCPVLGEGAHAVALPVIRI-VPPAAGYDYQNKYFTDEVQYLCPSGLSAELEREIQRI 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +++A+GCRG R+D + ++ F LE+N PGMT S+ P A +G S+ Sbjct: 249 TLASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISY 303 >gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO] gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 296 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 22/305 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVL+GGIS ER +SL SG+ AL+ G V IDVD + + LK ++ FN LH Sbjct: 3 IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G+FGEDG VQAIL+ + + YT S +LASA+ DK+ + +V+ + +T+ Sbjct: 63 GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDG-------YVNFPEYTIV 115 Query: 120 SQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + PY VIKP K GSS+G+ + + DL S ++++I++Y++G Sbjct: 116 KKPVKESPYGFPCVIKPRKEGSSIGVHICDNSNQLYNDL--SEELKKYNEMMIQRYIEGR 173 Query: 176 ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT ++ L V E+ PK FY Y KY S + +LPA + ++ Y++V + Sbjct: 174 ELTVSILEIGKPQILPVLELK-PKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSL 232 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + GC G +R D + L VF+ LE+N PG+T +S P A AG SF EL+ Sbjct: 233 RAFELCGCEGFARVDGI---LKDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDA 289 Query: 292 MVEDA 296 +++ A Sbjct: 290 IIQTA 294 >gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] Length = 306 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 159/297 (53%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A +AL D G D L L D F LHG Sbjct: 11 VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +++ ++KP GSS+G+ + + L ++++ Q+L+EQ++ G E Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E++ P FY Y+ KY S ++ + PA + +++Q +A A Sbjct: 189 TITVLGDEVQPVIEMSTPNG-FYDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGH-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILE 303 >gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] Length = 344 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 180/343 (52%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID---------VDRSV--------- 42 + VL+GG+S+ER+VSLSSG A AL + G +V +D +RS+ Sbjct: 7 ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66 Query: 43 -------GLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 GL L P D F LHG GEDG +QA+L+++ +PYT SG Sbjct: 67 PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHL---ISPPYVIKPLKGGS 137 LASAL+MDK SK V+ S GV I+ + T+D+ + + P V+KP K GS Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 ++G+ +++ + + + + ++ + D+++IE++V G ELT G++GDA L EI P Sbjct: 187 TVGLSIVRAPEELAAAVRE--AFRYDDEVMIERFVPGRELTVGILGDAVLPTIEIQ-PVK 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + Y YE KY+ + + P + K + A A QA+ RG +R DF DP + Sbjct: 244 ELYDYECKYTPGMAKEFVAELSPEEASKLADQ-AKRAFQALKLRGYARIDFRLDPQGQP- 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N PGMTP S+ P+ AA AG F +L +V+ A R Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 298 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG+A +L G+K ID+DR V ++ D+ F LHG Sbjct: 6 VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L+++ +PYT S A+ ++ DK+ SK+ GV I +N Sbjct: 66 TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELN---APK 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + VIKP + GSS+GI +++ ++ L ++ + ++++E+ + G+ELT Sbjct: 123 KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V I PK Y YE KY+ + +V + + V+ A A +GC Sbjct: 181 ILDGETLPVICIR-PKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G R+D ++D R + LE+N PGMT S+ P+ A AG SF ++ M+ Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKML 290 >gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 289 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 13/285 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 1 MSLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124 L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR T+ S+ L + Sbjct: 61 FLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P ++KP GSS+G+ + + + L++ ++ H +LIE+++ G E T ++G+ Sbjct: 121 GLPLIVKPSHEGSSVGMSKVDRASELHAALVE--AFRHDTDVLIEKWLSGPEFTVAILGE 178 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L I P FY YE KY S + + P+ + ++ +++ LA A+QA+GC G Sbjct: 179 DVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWG 237 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 238 RVDVMQDS-DGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 281 >gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88] gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 301 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 171/297 (57%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+S+E+E+S +GK L+ + +++ I ++ L+ + AF LHG Sbjct: 3 IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 NFGEDG VQA+LE + +PY+ SG+LAS+L MDK SK+++ G+ I++ + Sbjct: 63 NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +S I P V+KP GGSS+GI ++KK+Q + + ++ +++LIE+Y+ G E+ Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I K +F++Y+ KY + + A + L++ +V++++ ++ Sbjct: 181 TCCMLDGKPLPILSIKT-KEEFFNYKAKYFEGVAEEKV-ADLSLELKDQVEKISNKCWKS 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R D + +V+ +EIN PGMT S+FP+ A G +F ELL ++E Sbjct: 239 FKLKVYGRIDMIIK--GNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIE 293 >gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] Length = 343 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 173/335 (51%), Gaps = 39/335 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVGLVLAHLK 50 +L GG S E EVSLSS + +AL F+V+ + D R++ +A Sbjct: 11 LLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAETG 70 Query: 51 PDL-------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 DL F +LHG GEDG VQ +L L IP+ SG+L SA SMDK +K Sbjct: 71 GDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAMTK 130 Query: 98 QVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 QV+++ G+P P L+ R + + + P +KP GSS+GI ++ + Sbjct: 131 QVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGEDE 190 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGDASLDVTEIAVPK--SDFYSYELK 205 LD ++ H ++++E G EL G++G+ + + + + +DFY YE K Sbjct: 191 --LDGALREAFAHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYETK 248 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y+ +T +PA +P + ++V+ A A +A+ C G++R DF ++ + +V+ E+N Sbjct: 249 YTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVNTM 308 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG TP S++P + A AG S+ +L+ +VE A+ R Sbjct: 309 PGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343 >gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] Length = 313 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 163/304 (53%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA + D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLAGI--DRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV P +V R D Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPV-PRGMVLRNETDC 128 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + VIKP K GSSLG+ +K + + S G +L E+YV G EL Sbjct: 129 EEAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGREL 188 Query: 178 TCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T V MG+ + + EI P D Y +E KY S + +V PA++P ++ ++++ + Sbjct: 189 TVAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEK 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+G SR D + V LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 248 AALAVGADAWSRIDVILRDDGSFVL-LEINTAPGMTPHSLVPLAARTCGISYEELVKQVA 306 Query: 294 EDAS 297 AS Sbjct: 307 ARAS 310 >gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 313 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG SSEREVSL+SGK L DAG D +R LA LK + AFN Sbjct: 12 VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERP----LAALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDPIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L V +I VP +FY Y KY + ++ +++P +P D E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 VARRAFDVLGCTDWGRADFMLD-ADGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] Length = 327 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 22/309 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + + RF M Sbjct: 77 RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLW------MTHDLSTPRFAMLY 130 Query: 119 ---DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D +++ P ++KP + GSS+G+ + + ++++ + + ++ E ++ Sbjct: 131 ADTDFDAVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAFEKAAALD--NDVIAETFI 188 Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ELTC ++G+ +L V I P S+ Y Y+ KY + ++ ++ P+ + ++ +EVQ Sbjct: 189 DGAELTCPLVGEGATAEALPVIRIVAPDSN-YDYQNKYFTDDTQYLCPSGLSAEVEREVQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +LA A++ +GCRG +R+D + K F LE+N PGMT S+ P A AG S+ + Sbjct: 248 QLAVQAYRVLGCRGWARADVMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDF 306 Query: 289 LLWMVEDAS 297 ++ +V A+ Sbjct: 307 VMQVVAAAT 315 >gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] Length = 303 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 17/300 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 ++ GG SSEREVSL+ + A AL G V+ D+ +L + D A LHG Sbjct: 5 LIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-------CPSILVN 114 GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P CP Sbjct: 65 PGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPP---- 120 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D Q + P +K GGSSL + + LD++ + + GD+ LIE + G Sbjct: 121 --PADWQPRLPYPLFVKSNTGGSSLRLGRARDRAE--LDMVLAEIFAAGDEALIEPELKG 176 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TCG++G+ +L I DF+ YE KY++ + + PA I ++ V+ LA A Sbjct: 177 REVTCGILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAA 236 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H+A+G RG SR+DF+ D + + LE+N PGMT S+ P+ A G F LL ++E Sbjct: 237 HRALGLRGYSRADFILD-ADQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLME 295 >gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] Length = 321 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S EREVS +S K + +L G+ V ID Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 38 VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 V+ G++ K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +++V+R + P VIKP++ GSS GI +++ + D+ Sbjct: 127 IVASSVGIKCASNLMVDRIQAN-----DFPIVIKPIRSGSSKGIKILQNKKQ--FDIYYK 179 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 G +E+Y+ G E + G++G+ L V EI V K+ FY Y KY+ + V+PA Sbjct: 180 EHPELG-SFFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKG-DVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] Length = 319 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG ++ AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPT-PDYAVLGSEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P ++KP GSS+G+ + + +++ ++ Q+L+EQ++ G E Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] Length = 316 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G + IDV + V L+ + AF VLHG Sbjct: 13 VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ +P + T D+ Sbjct: 73 RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTAD---FSALTEDT 129 Query: 121 QHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++KP + GSSLG++ ++ ++ +++ ++ + E+++ G Sbjct: 130 DPAVIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAIFDTA--VFAERWLSGA 187 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234 E T ++ D L + + P+ FY +E KY + N+TH P + +Q LA A Sbjct: 188 EYTAAILADRVLPLIRLETPRV-FYDFEAKYHA-NTTHYFCPCGLSERQEHVLQALALEA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q +G G R D D + + LEIN PGMT S+ P A AG F E++L ++E Sbjct: 246 FQVLGASGWGRVDLRCDEKAHP-YLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILE 304 >gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 330 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58 + VL GG SSEREVSL SG +AL++ G++ +D S+ +L + ++ +N L Sbjct: 26 VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ + + +P T + I ASA++MDK+ SK++ S GVP ++ Sbjct: 86 HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145 Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P VIKP GSS+G+ ++++ I L ++ + +L+E+Y++G+ Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 EL+ G++ D L EI P S Y YE KY ++ ++P ++ + L A+ Sbjct: 204 ELSVGILADRVLGAVEIR-PTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G +R+D F LE+N PGMT S+ P++AA+AG + L ++E Sbjct: 263 HALGCTGYARADLRVQ-ADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 319 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 18/301 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A AL D D ++ L PD F VLHG+ Sbjct: 14 VLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHGSM 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL+ +PY + A ++ DK +K VV + G+ PS+ + + Sbjct: 74 GEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHDLG 133 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG V+++ +P ++ + +GD LIE+++ Sbjct: 134 AAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAMV--GCFAYGDAALIERHI 191 Query: 173 DGIELTCGVM---GD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ V+ G+ +L EI VP + Y Y +Y + ++ V PA++P ++ + Sbjct: 192 EGTEVAVSVIERDGEPVALPAVEI-VPAGELYDYTARYDAGDTEFVTPARLPEEVARRAA 250 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+A+G R +SR+D + D + +V +LE+NV PGMT S+FP A AG + + Sbjct: 251 EAAVTAHRALGLRDLSRTDLIVDE-AGQVHFLEVNVAPGMTETSLFPRAVAAAGLNLGRI 309 Query: 289 L 289 L Sbjct: 310 L 310 >gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp. novicida U112] gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112] gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1] Length = 296 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 287 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 13/281 (4%) Query: 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 SG+A + L +AG ID L D F LHG GEDG +Q +LE L++ Sbjct: 3 SGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQL 62 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------ISPPY 128 PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR T+ S+ L + P Sbjct: 63 PYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLPL 122 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 ++KP GSS+G+ + K + L++ ++ H +LIE+++ G E T ++GD L Sbjct: 123 IVKPSHEGSSVGMSKVDKISELQGALVE--AFRHDTDVLIEKWLSGPEFTVAILGDEVLP 180 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 I P FY YE KY S + + P+ + ++ +++ L+ A+QA+GC G R D Sbjct: 181 SIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVDV 239 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 240 MQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 279 >gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] Length = 313 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 163/304 (53%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA + D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLAGI--DRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV P +V R D Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPV-PRGMVLRNETDC 128 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + VIKP K GSSLG+ +K + + S G +L E+YV G EL Sbjct: 129 EEAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGREL 188 Query: 178 TCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T V MG+ + + EI P D Y +E KY S + +V PA++P ++ ++++ + Sbjct: 189 TVAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEK 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+G SR D + V LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 248 AALAVGADAWSRIDVILRGDGSFVL-LEINTAPGMTPHSLVPLAARTCGISYEELVKQVA 306 Query: 294 EDAS 297 AS Sbjct: 307 ARAS 310 >gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] Length = 304 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S+ER++SL SG A +AL+ G+ D DR++ + + D+ F LH Sbjct: 13 VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLRGY---DVVFIALH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT 117 G GEDG VQ +L+LL IPYT SG+L SAL MDK R K++ G+P L+ +R Sbjct: 70 GRGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPV 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P ++KP + GSSLG+ ++ + + +++++ D +L E +V+G E Sbjct: 130 LDEG--VGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAAYD--DTVLAEAWVEGEEY 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L + P + F+ Y KY + ++ H P+ + + E+ L A A Sbjct: 186 TVALLGDQALPSIRLETPHA-FFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIA 244 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R D + D R +W LE+N PGMT S+ P AA AG F EL+ ++ +A Sbjct: 245 SGGNGWGRVDVMRDTGGR--WWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302 >gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 296 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPMAKFLTDKLVA 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis NE061598] Length = 296 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 306 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 156/289 (53%), Gaps = 6/289 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61 ++ GG S+EREVSLS AL G KV+++D +R ++ D AF +HG Sbjct: 5 LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120 GEDGLVQA+LE ++ PY SG AS L+++K +KQV + G+P L R Sbjct: 65 PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSSL + + D + L + G+ +L+E+ V+G E+T Sbjct: 125 STKLRFPLFVKPNMGGSSLDLC--RADNAEELTPAIERIFCRGETVLLEEGVNGQEVTSA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ +L + I F+ Y KY+ + + PA IP I + VQ L+ AH+A+ Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 RG SRSDF+ + + + LE+N PGMTP S+ P+ A AG F L+ Sbjct: 243 RGYSRSDFMLE--GDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALI 289 >gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141] Length = 321 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S EREVS +S K + +L G+ V ID Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 38 VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 V+ G++ K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +++V+R + P VIKP++ GSS GI + + + D+ Sbjct: 127 IVASSVGIKCASNLMVDRIQAN-----DFPIVIKPIRSGSSKGIKIFQNKKQ--FDIYYK 179 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 G + +E+Y+ G E + G++G+ L V EI V K+ FY Y KY+ + V+PA Sbjct: 180 EHPELG-SVFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKG-DVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] Length = 313 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKEEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D F LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica LVS] gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. holarctica LVS] Length = 296 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 126 EDE--ISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16] gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16] Length = 327 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 169/304 (55%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASA++MDK +K++ + G+ P + D Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGL-ATPRFAMLHADTDF 135 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP + GSS+G+ + + ++++ + + ++ E ++DG EL Sbjct: 136 DAVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFEKAAALD--NDVIAETFIDGAEL 193 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC ++G+ +L V I P+++ Y Y+ KY + ++ ++ P+ + ++ +EV+ LA Sbjct: 194 TCPIVGEGDSAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQ 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ +GCRG +R+D + K F LE+N PGMT S+ P A G S+ + ++ +V Sbjct: 253 SYRVLGCRGWARADLMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVV 311 Query: 294 EDAS 297 A+ Sbjct: 312 AAAT 315 >gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct] Length = 296 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72] gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72] Length = 304 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 161/303 (53%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG A +AL+ AG D +L D F LHG Sbjct: 8 VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG VQ LEL+ IPYT SG++ASAL+MDK R+K V SCG+P +++ F Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLI-EQYVD 173 ++ L P +V KP+ GSS+G + + + ++W D L+I E+++ Sbjct: 128 AIARDLGLPIFV-KPVHEGSSMGATKVTEAGQL------RAAWELAARYDSLVIAEEFIS 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT + D +L + I P + Y Y+ KY + ++ + P +P + +Q L Sbjct: 181 GQELTAPFLDDRALPLVRIVAPDGN-YDYQHKYFTDDTRYDCPCGLPQAEEEALQALILK 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + +GCRG R+D + P R + LE+N PGMT S+ P A AG SF L L ++ Sbjct: 240 SARVLGCRGWGRADLILTPEGRP-YLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAIL 298 Query: 294 EDA 296 A Sbjct: 299 AGA 301 >gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium] Length = 292 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 158/295 (53%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+A AL+ K + D + L K D AF VLHG Sbjct: 2 IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S +S M+K +K + +P+ PS++ N Sbjct: 62 RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GSS+GI + DQS L+ + +W + LIE++++G E T Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKV-TDQS-QLNEALALAWKYDQNALIERWIEGDEYTVS 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + +L +I V + FY Y+ KY S ++ ++ P +P K +Q +A A +A+ Sbjct: 180 ILNNKALPAIKIIVNRG-FYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R DF+ D ++K++ LEIN PGMT S+ P A G SF EL+L ++ D Sbjct: 239 SNWGRVDFIIDK-NQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292 >gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] Length = 779 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 162/299 (54%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SGKA AL G+ + ++ + ++ + L+P + FN LH Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114 G +GEDG++Q L++L +PYT SG+ A+AL+MDK +K++ + G+ L++ Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P V+K + GSS+G+ ++ + + L+ + +G + L+E+++ Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEE--LNAALDDVFTYGREALVEEFIR 650 Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G +L V EI S Y YE KY+ STH++PA + + + VQ Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITT-ASGRYDYESKYTPGASTHIVPAALSKECTEAVQA 709 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A A A GC G +R D + + + +E+N PGMT S+ P+ A G F EL Sbjct: 710 IAVRAFTACGCSGAARVDIMLSE-EEQPYVIEVNAVPGMTETSLVPDAARAVGMEFPEL 767 >gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] Length = 312 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 164/300 (54%), Gaps = 18/300 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDLAARATDIVTKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+ Sbjct: 186 SIEGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRI 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G + EL++ Sbjct: 245 ARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVV 303 >gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] Length = 304 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 165/297 (55%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG+A +AL G D L L+ D AF LHG Sbjct: 9 VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119 GEDG +Q LE L +PYT SG+L SAL+MDK+R K++ + G+ ++V + D Sbjct: 69 RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 SQ +I+ ++KP GSS+G+ K + L+ S+++ D +++E+++ G E Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGM--AKAATASELNEAISNAFRFDDTVMLEKWITGREF 186 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ + + E+ P+ FY YE KY + ++ + PA++ + +Q LA A + Sbjct: 187 TVTMISGVAQPIVEMVTPRG-FYDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R D + D + + + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 246 VGASGWGRVDAMRDQ-AGQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILE 301 >gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] Length = 313 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKEEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D F LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] Length = 306 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG A + L + G ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LELLE+PYT SG++ASAL MDK RSK + S +PV P + +NR Sbjct: 65 RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + P ++KP GSS+G+ K +S L++ ++ + D++L+E++ Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGM--SKVSESSTLEVALEEAFRYDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I FY Y+ KY S N+ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-SAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A++A+ CRG R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LRAYRALDCRGWGRIDLMQDS-DGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLV 298 >gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 308 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 14/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 ++VL GG S ER VSL SGK A L+ G V +D+ L LA +P+L F L Sbjct: 3 ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG +QA+L++ +PYT SG A++MDK SK ++ G+ V + V+ Sbjct: 63 HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122 Query: 119 DSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S + V+KP GGS++ ++ ++ + L SS+W ++ L+E YV G Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKAL--SSAWELENRALVEAYVAGR 180 Query: 176 ELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V+ D + + EI +P +FY Y KY S +V PA + + + V R A Sbjct: 181 ELTVTVVEDRGIPRAFPIVEI-LPDGEFYDYRAKYGG-GSRYVSPADLEPSVVEVVSRSA 238 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +AH+ GC SR D D +R F LEIN PGMT S+ P+ A G+SF +LL Sbjct: 239 EIAHRVSGCSIYSRVDIRLDGKNRP-FVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDH 297 Query: 292 MVEDA 296 +VE++ Sbjct: 298 IVEES 302 >gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] Length = 296 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 164/292 (56%), Gaps = 9/292 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK + L+ ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG +Q++LE ++IPY+ G L SA+ MDK SK+V+ S + I V Sbjct: 63 KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P V+KP GGSS+ ++KK + I ++ + ++ +++IE+Y+ G E+ Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNV--KLALDYDTEVVIEKYIQGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ +L V I P ++F+ Y KY+ S ++ ++ + ++V+++ + Sbjct: 181 TCCMLKGKTLPVIAIK-PNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C+ +R D + + + + LE+N PG+T S+FP+ A SF +LL Sbjct: 239 LKCKSYARVDIIVE--NGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLL 288 >gi|20136383|gb|AAM11649.1|AF492457_1 D-alanine:D-alanine ligase [Azospirillum brasilense] Length = 209 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 123/187 (65%), Gaps = 17/187 (9%) Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H + PY++KP+ GS++G+ ++++ Q+ P+ +W G++ L+E+++ G ELT GV Sbjct: 27 HPMPAPYIVKPVDEGSTVGVTLVREGQNSPV----GDAWTFGERALVEEFIPGRELTVGV 82 Query: 182 MGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 MG L VTEI ++ Y Y KYS+ ++ H +PA+IP + +E +RLA LAH+ Sbjct: 83 MGGLDGECRPLTVTEIRF-EAQVYDYTAKYSAGHAVHTVPAQIPEHVAEEAKRLAVLAHR 141 Query: 237 AIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +GCRG+SRSDF +D RK +F+LEIN QPGMTP+S+ PE AA G ++ L+ W Sbjct: 142 TLGCRGVSRSDFRWD--DRKSGTDGLFFLEINNQPGMTPLSLVPEQAASVGLTYGALVAW 199 Query: 292 MVEDASC 298 MVE+A+C Sbjct: 200 MVENAAC 206 >gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 305 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W+ ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDR--FVMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I P S+F+ Y KY + + ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADEQV-IELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E Sbjct: 239 MKCSVYARIDIILK--GKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIE 293 >gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct] Length = 331 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 32 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P L ++ Sbjct: 92 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 151 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 152 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 206 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D I P+++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 207 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 264 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 265 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321 >gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D +RSV ++A+ D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVAY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T D Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDT-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +I+ P +IKP+ GSS+G+ ++K + + ++++ H ++ E+++ G E Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAAAIAKATA--HDAVVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T + L V + P FY YE KY + + +P + K +Q L A Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+G G R D + D + FW LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILE 301 >gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] Length = 313 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 169/304 (55%), Gaps = 19/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LSALKEEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDR--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + G+ L V I VP +FY Y KY + ++ +++P + + ++ Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDG-EGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 LWMV 293 + ++ Sbjct: 304 VGVL 307 >gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 305 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W+ ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDR--FVMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I P S+F+ Y KY + + ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADEQV-IELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E Sbjct: 239 MKCSVYARIDIILK--GKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIE 293 >gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] Length = 348 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAG-FKVSQIDVDR--------SVGLVLAH 48 + +L GG+S E EVS+SS +A A+AL E+A ++V + + + ++ VL Sbjct: 6 VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 P D+ F +LHG GEDG VQ +L+L+ +P+ SG+L SA+ Sbjct: 66 GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137 MDK+ K V + G+P + V R + S + ++ PY +KP GS Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA 193 S+GI ++ + L +++S++ +L++E+ V G E+ C V+G+ AS+ V EI Sbjct: 186 SVGIAKVRSRSELEAALDKAASYDR--RLIVEEGVVGREVECAVLGNDHPKASV-VGEIT 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +SDFY YE KY+ + ++PA +P D+ ++Q +A A A+ G+ R DF + Sbjct: 243 Y-ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEA 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +R++F EIN PG T S++P++ A G SF EL+ +++ Sbjct: 302 TREIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQ 342 >gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] Length = 320 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 28/311 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKP--DLA 54 +A+L GG S+EREVS+ SG +AL+ F V +ID+ R L H P D+A Sbjct: 6 LALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPR-----LVHDAPNIDVA 60 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 +LHG +GEDG +Q +L++L+IPY SG+L SA+SM K+ SKQ+ G+ P +V Sbjct: 61 VVMLHGEYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVV- 119 Query: 115 RFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 + D++H + P +KP GGSS+G+ ++K LD + + LL Sbjct: 120 --SPDNRHEAANLADQVGYPLFVKPCMGGSSIGMSLVKGPAD--LDKALDAGFAEDPVLL 175 Query: 168 IEQYVDGIELTCGVMGDASLDVTEI--AVPKSD--FYSYELKYSSLNSTHVLPAKIPLDI 223 +E V G+E+T V+G+ L+ + VP + F+ Y KY + S + PA+I + Sbjct: 176 LEACVTGVEITGAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEG 235 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ L+ AH+A+ C+G SR+D + D + LE N PGMT S+ P+ A AG Sbjct: 236 AQKAMDLSKQAHKALFCKGYSRTDMILDK-DGALHVLETNTIPGMTANSLLPKAAKVAGM 294 Query: 284 SFRELLLWMVE 294 F L+ +V+ Sbjct: 295 DFTALMSRLVD 305 >gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1] gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1] Length = 316 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 173/316 (54%), Gaps = 26/316 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 + VL+GGIS ERE+S+ SGK A AL + G V +IDVD + L+ LK D FN+LH Sbjct: 3 LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDK----------MRSKQVVSSCGVPVCP 109 G FGEDG +QAIL+ + IPYT SG+ S ++ DK + + +S +P Sbjct: 63 GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122 Query: 110 SILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 I F ++I P V+KP K GSS+G + + + LD L++ N+ D+ Sbjct: 123 LISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEEL-LDALKNEFKNY-DE 180 Query: 166 LLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +++++Y+ G E+T V+ L + E+ PK FY YE KY+ + ++PA++ Sbjct: 181 MIVQEYIKGKEITVSVIDINGTPTVLPILELR-PKKLFYDYEAKYTDGMTEFIIPAELDG 239 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAY 280 + +++ ++++GC+ SR D + + VF+ LE+N PGMT +S P A Sbjct: 240 ETTEKINHAVLKIYKSLGCKHFSRIDGI---VKDGVFYFLEVNTLPGMTELSDLPMSANA 296 Query: 281 AGYSFRELLLWMVEDA 296 G SF EL+ ++++A Sbjct: 297 FGISFDELVDLIIKEA 312 >gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] Length = 302 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 154/294 (52%), Gaps = 5/294 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG S EREV+LS + L G +V+ D R + GL A + AF LHG+ Sbjct: 5 LIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDS 120 GEDGLVQ +LE + +PY S AS L+++K SKQ+ + G+P V + Sbjct: 65 PGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVAEW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + L+ P V+KP GGSSLG+ ++ + + L Q G LL E + G ELTCG Sbjct: 125 RPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEI--AGQDLLAEALIRGQELTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L I +F+ YE KY + + + PA IP ++ + +Q +A AH A+G Sbjct: 183 VLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 SR+DF+ + LE+N PGMT S+ P+ A G SF +LL ++E Sbjct: 243 SDYSRADFMVT-ADGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIE 295 >gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] Length = 366 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L D FNVLHG Sbjct: 72 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQY--DRVFNVLHG 129 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P ++ T D Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAET-DW 188 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q +++ P +IKP+ GSS+G+ + +P +++ GD ++ E+++ G E Sbjct: 189 QQIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELP--AAYATAIQCGDVVMAERWITGREF 246 Query: 178 TCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A + Sbjct: 247 TIVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFR 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ +G R D + D FW LEIN PGMT S+ P A G F E L W + Sbjct: 307 AVEAKGWGRIDAMQDEAGN--FWLLEINTVPGMTSHSLVPMAAKARGIDF-ESLCWHI 361 >gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] Length = 317 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKPDLAF 55 +AV+ GG S+EREVSL SG A L G++V ++D+ S + L ++ DLAF Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--V 113 LHG GEDG VQA+LE+ PYT S LA L+MDK+ +K+ + G+P P+ L V Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIP-TPAYLSFV 128 Query: 114 NRFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + D + +S P ++KP + GS++GI K LD + + +L+E+++ Sbjct: 129 DHANADLIEEQMSYPVIVKPSREGSTIGI--NKAMNRAELDDALIKALEYDSDILVEEFI 186 Query: 173 DGIELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 DG E T V+ D + + P Y YE KY + ++ ++LP + D E+Q LA Sbjct: 187 DGPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++++GC G R D + D VFW LE+N PGMT S+ P A Y G + L+ Sbjct: 247 LDAYRSLGCFGWGRVDVMRD--QAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVE 304 Query: 291 WMVEDA 296 + ++A Sbjct: 305 KIAQNA 310 >gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] Length = 324 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 19/298 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--GLVLAH-LKP-DLAFNVL 58 +L+GG SSER +SL SG+ AL+ AG V+ +DV R L+ AH KP D AF +L Sbjct: 12 LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113 HG GEDG +QA+LELL IPYT + + SA+ MDK+ K++ G+P P +V Sbjct: 72 HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +DS L P ++KP+ GSS+G+ + + + +++ + Q+++E+Y+ Sbjct: 132 AHRALDSLGL---PVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARYG---QVMMERYIR 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++G +L V ++ P DFY ++ KY + ++ + +P+ + + +Q +A Sbjct: 186 GGEYTVSLLGGRALPVIRLSTPH-DFYDFDAKYLANDTEYTIPSGLSAEEESAMQAIALK 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + IG G R DF+ D + WL E+N PGMT S+ P A G EL L Sbjct: 245 AFEQIGGSGWGRVDFMRDEHGQN--WLIEVNTVPGMTDHSLVPMAARAVGIEIEELCL 300 >gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] Length = 314 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 159/295 (53%), Gaps = 16/295 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG SSEREVSL SG A AL+ G +DV + PD F LHG Sbjct: 21 VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVN---RFT 117 GEDG +QA+L+ L IPYT S ASAL+MDK+++KQV S G+ P S++ N + Sbjct: 81 GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +DS + +KP GSS+G+ V+ Q + +++ ++ ++L+E+ + G E Sbjct: 141 LDS---LGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAAHYDA--KVLVERRIVGREF 195 Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T V+ +L + K+D FY Y+ KY S + ++ P + + E+Q +A A Sbjct: 196 TVAVLNGVALPAIGL---KTDHVFYDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAF 252 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+GC+G R DF+ D + + LE+N PGMT S+ P A +G F EL+L Sbjct: 253 AAVGCKGWGRVDFMQDE-AGNFYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVL 306 >gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1] gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1] gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8] gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1] Length = 307 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AV+ GG S+EREVSL+SG A +AL G D D + +HL+ D FNVL Sbjct: 15 VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 71 HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130 Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A + Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG SR DFL K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304 >gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169] gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1] gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72] gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E] Length = 333 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AV+ GG S+EREVSL+SG A +AL G D D + +HL+ D FNVL Sbjct: 41 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 96 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 97 HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 156 Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 157 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 214 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A + Sbjct: 215 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 273 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG SR DFL K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 274 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 330 >gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] Length = 306 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 164/306 (53%), Gaps = 19/306 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG S+EREVSL SG A + L +AG ID + LA LK F Sbjct: 5 VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGID---TRDFPLAQLKAQGFSKVFIA 61 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V S G+P+ P + ++R Sbjct: 62 LHGRGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAE 121 Query: 118 M----DSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 SQ L S P ++KP + GSS+G+ + + + L ++ H D +L+ Sbjct: 122 FVGEAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAAL--DEAFRHDDDVLV 179 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+++ G E T +GD + I P FY Y+ KY S ++ + P+ + + E+ Sbjct: 180 EKWLSGPEYTVAFLGDQLMPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLSAEQESELA 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ + C G R D + D + LE+N PGMT S+ P A G F +L Sbjct: 239 ALAARAYRGLDCSGWGRVDVMQDN-DGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQL 297 Query: 289 LLWMVE 294 + ++E Sbjct: 298 VARILE 303 >gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)] Length = 330 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 161/298 (54%), Gaps = 13/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A AL+ G + + D L + D FNVLHG Sbjct: 36 VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKNY--DRVFNVLHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+ CG+ P ++ + T D Sbjct: 94 RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDT-DW 152 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q ++S P ++KP+ GSS+G+ + +P +S GD ++ E+++ G E Sbjct: 153 QQVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELASG--CGDVVMAEKWIAGREF 210 Query: 178 TCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ D + V + S+FY YE KY+ ++ + +P + + +Q L+ A + Sbjct: 211 TIVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFK 270 Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ G R D + D FW LEIN PGMT S+ P A G F E L W + Sbjct: 271 AVDAEGWGRIDAMQD--ENGNFWLLEINTVPGMTSHSLVPMAAKARGMDF-EQLCWHI 325 >gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL] gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL] Length = 364 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 178/338 (52%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35 +AVL GG+S+E E+SL S K+ +ED K +Q Sbjct: 6 VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 36 IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + DR+ ++ + D+ F VLHG GEDG VQ +LEL +IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ E+N PG T +S++P++ ++G S+ +L+ Sbjct: 304 KDTNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLI 341 >gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1] Length = 307 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AV+ GG S+EREVSL+SG A +AL G D D + +HL+ D FNVL Sbjct: 15 VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 71 HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130 Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A + Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG SR DFL K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304 >gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] Length = 313 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 168/301 (55%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRD 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P D +++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAIGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7] Length = 307 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AV+ GG S+EREVSL+SG A +AL G D D + +HL+ D FNVL Sbjct: 15 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 71 HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130 Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A + Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG SR DFL K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304 >gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 315 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 164/302 (54%), Gaps = 18/302 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 +AV++GG SSE E+S +G A A+AL + G+ +++++ S L+ L + + FN + Sbjct: 9 VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPS-NLINELRDMNAKVVFNAV 67 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117 HG +GEDG +Q+ILE IPYT G+LASA+SMDK +K+ + S G+P P +++N R Sbjct: 68 HGMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDA 127 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D Q L P VIK GSS+G+++ K Q + L + ++ + + +L E+ Sbjct: 128 GDLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPALEE--AFKYSENVLAEK 185 Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + G ELT +M + L V IA P S Y + KY+ + + PA Sbjct: 186 CIKGKELTISIMEENGEPKPLPVIWIA-PHSGAYDFHSKYTKGATDYHCPAPFDEKTTAY 244 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +Q++A ++ +G G++R D + + LE N PGMT S+ P+ AA G SF Sbjct: 245 IQKIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFP 304 Query: 287 EL 288 EL Sbjct: 305 EL 306 >gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] Length = 342 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 18/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+ER+VSL SG+A SAL AG +DV + + + D F LHG Sbjct: 34 VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IP+T S ++ASAL+MDK+R+K V + CG+ P D+ Sbjct: 94 RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGL-ATPKFRTMASAEDA 152 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL----LIEQYVD 173 + + P +KP + GSS+GI + +L+Q +W L L+E++++ Sbjct: 153 NSIAAELRMPLSVKPSREGSSIGICKVTSAG----ELVQ--AWQAAAALDTSVLVEEWIE 206 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++ D +L ++ FY Y+ KY + ++ + +P + D +Q+LA Sbjct: 207 GPEFTVSLLQDRALPAIGLSTDHV-FYDYDAKYLADDTRYCIPCGLSADEELRLQQLALE 265 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A + +GCR R D + D + FW LE+N PGMT S+ P A AG SF EL++ + Sbjct: 266 AFRVVGCRTWGRVDIMQDADGK--FWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRI 323 Query: 293 VED 295 + D Sbjct: 324 LAD 326 >gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR] gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR] Length = 309 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 10/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+ER+VSL SG A L G D L K D F LHG Sbjct: 9 VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L++LE+PYT S +L AL MDK+R KQ+ S G+P +V + ++ Sbjct: 69 RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ + ++KP + GSS+G+ + +S+ L L ++ ++ D LL+EQ+V+G Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALALQHAAEFD--DDLLVEQWVEG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T G++ +L V + P +FY +E KY + ++ + PA + D ++ LA A Sbjct: 187 AEYTIGILEGKALPVIRLQTPH-EFYDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AIG G R D + + + + F LE N PGMT S+ P A AG F +L+ Sbjct: 246 FAAIGGSGWGRIDVMRNN-AGEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLV 299 >gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] Length = 313 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERP----LAALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q +++ P +KP GSS+ +I +K ++ L ++ ++ +++E+ Sbjct: 128 DDYAARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPALEEAVKFDK--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + I VP +FY Y KY + ++ +++P I + +++ Sbjct: 186 SIEGGGEYTACIAGDLDLPIIRI-VPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKK 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARQAFDVLGCTDWGRADFMLDG-EGNAYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] Length = 331 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/324 (31%), Positives = 172/324 (53%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSERE++L S ASAL+ A + ++ ID+ D Sbjct: 6 IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H D A ++HG GE+G +Q L+++ IPY+ + +S ++ DK+ +K+ V Sbjct: 66 SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125 Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+P+ R + +D + ++ P +KP GSS G+ +K + I + + Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAVAE 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + D++LIE+ + G E+ CG++ + +TEI V K +F+ YE KY++ S Sbjct: 186 A--FTESDEILIEECIQGREMGCGMLIAKGREYIFPITEI-VSKKEFFDYEAKYTAGCSD 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA I +I E+ RL LA++A CRG+ R DF+ P K + +EIN PGM+ S Sbjct: 243 EITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTP-EGKPYLIEINSIPGMSGGS 301 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AG + EL ++ED Sbjct: 302 IVPKQVREAGMTLGELYDLIIEDT 325 >gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 361 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 172/342 (50%), Gaps = 57/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG S+E E+S+ S ++ A + ++V I + R+ Sbjct: 6 VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65 Query: 42 ----VGLVLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 G A LK D+AF +LHG++GEDG +Q L+ + IP Sbjct: 66 LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYV 129 YT G+ ASAL+MDK SK VS G+ V P ++L + + ++S P Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186 +KP GSS+GI + +P L + + N ++LIEQ + G E+ V+G+ + Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEAL--AHACNLDTKVLIEQAMHGKEIEVAVLGNNDPIA 243 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI P SDFY Y+ KY + +PA++P ++ + VQ A A++A+GCRG++R Sbjct: 244 SACGEIE-PGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 DF D S +V + EIN PG T +S++P++ AG +F EL Sbjct: 303 DFFVDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPEL 344 >gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 302 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 168/297 (56%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ + ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V +D Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + I P +KP GGSS+ + K + I +++ ++ ++++IE ++ G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGLKYD--EEVIIESFIKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294 >gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] Length = 303 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 13/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ERE+SL + KA AL G+++S IDV + ++ F +HG Sbjct: 9 IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDA--EICFLCIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q +L IP+T S +S + DK SK + G+P P +V D Sbjct: 67 SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVG----DG 122 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + PPYVIKP + GSS+GI + + + + +S+ ++H +L E + G ELT Sbjct: 123 KKIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDH--VVLAEALITGKELTV 180 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ +L V EI PK FY Y KY+ ST+ PA + +D VQ+ A A +G Sbjct: 181 GILDGKALPVVEIK-PKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLG 239 Query: 240 CRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C R D + + W LEIN PGMT S+FP A +G +F +L ++E Sbjct: 240 CSVYGRVDIILS--DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293 >gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu] Length = 313 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG+S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +KP GSS+ ++ +K ++ + + H +++E+ Sbjct: 128 DDLAARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTADAL--PAALAEAAKHDPIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L V +I VP +FY Y KY + ++ +++P + D E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-ANGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 326 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 164/303 (54%), Gaps = 12/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV+ GG S+EREVSL SG+A +AL AG D DR + L K D +LH Sbjct: 28 VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQL-HELVEQKFDRVLIMLH 86 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P + ++ + Sbjct: 87 GRGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFN 146 Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + + ++KP + GSS+G+ + + + Q ++ + D++L+EQ++ Sbjct: 147 AANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAIQQ--AFEYDDKVLLEQFIQ 204 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++ +L ++ P+ DFY YE KY S ++ + P+ + + ++ +LA Sbjct: 205 GSEYTVSLLNGIALPSISMSTPR-DFYDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALN 263 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ G R DF+ D + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 264 AFDAVAGTGWGRIDFMQDAQG-QFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVL 322 Query: 294 EDA 296 A Sbjct: 323 ATA 325 >gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 289 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 153/285 (53%), Gaps = 13/285 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG ID L D AF LHG GEDG +Q +L+ Sbjct: 1 MSLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLD 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---- 126 L++PYT SG++ASAL+MDK+RSK V + G+PV P I ++R T+ S + Sbjct: 61 FLQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKL 120 Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P ++KP + GSS+G+ K + + L+ ++ H + +LIE+++ G E T ++GD Sbjct: 121 GLPLIVKPSREGSSVGM--SKVNHASELNAALQEAFRHDNDILIEKWLSGPEFTVAMLGD 178 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L I P FY YE KY S + P+ + +++ LA A+QA+GC G Sbjct: 179 EVLPSIRIQ-PTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWG 237 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D + D + LE+N PGMT S+ P A AG SF +L+ Sbjct: 238 RVDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLV 281 >gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] Length = 303 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 166/308 (53%), Gaps = 28/308 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------VDRSVGLVLAHLKPDLA 54 + +LMGG S EREVS+ SG ALE+ G+ V +D ++ +G+ D+ Sbjct: 5 VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDPQEPRWQEKLIGV-------DMV 57 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV- 113 +N LHG GEDG VQ L++ IPYT +G+L SA+SMDK+ +K++ +CG+P P+ LV Sbjct: 58 YNTLHGPVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIP-TPAYLVV 116 Query: 114 ------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 M ++ S P V+K + GSS+G+ ++ L + + Q++ Sbjct: 117 TADMAHGAVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQLDS--QVM 174 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +E+Y+ G ELT G + D +L + I V + FY Y KY+ + + +P K+ V Sbjct: 175 VEEYIQGYELTSGFLDDLALPLVGI-VAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRV 233 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + +A+G RG R D++ L V ++LE+N PGMT S+ P+ A AG SF Sbjct: 234 VDYSRRLCRALGLRGAFRVDYM---LKDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFA 290 Query: 287 ELLLWMVE 294 +++ ++E Sbjct: 291 DVVAKVLE 298 >gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 306 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 5/294 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLHGN 61 ++ GG S ER+VSL+ +A ALE G +V+ D+ + GL+ A + D A LHG Sbjct: 5 LIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120 GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P V F D Sbjct: 65 PGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGKDW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P +K GGSSL + + LD + + G+++++E + G E+TCG Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARNRAE--LDDIMGQIFAAGEEVIMEPVLPGREVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ L I DF++YE KY + + PA I ++ VQ L AH+A+G Sbjct: 183 ILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SR+DF+ P + LE+N PGMT S+ P A G F +LL ++E Sbjct: 243 RGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLME 295 >gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34] gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34] Length = 327 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 173/307 (56%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASAL+MDK +K++ + G+ P + D Sbjct: 77 RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGL-ATPRFAMLYANTDF 135 Query: 121 QHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +++ P ++KP + GSS+G+ VI DQ + ++ D ++ E ++DG E Sbjct: 136 DAVVADLGLPLIVKPAREGSSIGLTKVIAADQM--RAAFEKAAGLDAD-VIAETFIDGAE 192 Query: 177 LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LTC ++G+ +L V +I P+S+ Y Y+ KY + ++ ++ P+ +P + +EV+ LA Sbjct: 193 LTCPIVGEGPTAEALPVIKIVAPESN-YDYQNKYFTDDTQYLCPSTLPDALEREVRALAV 251 Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +GCRG +R+D + L+R K + LE+N PGMT S+ P A G S+ + ++ Sbjct: 252 EAFRVLGCRGWARADVM---LTRDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVM 308 Query: 291 WMVEDAS 297 ++ A+ Sbjct: 309 QVLAAAT 315 >gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] Length = 313 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 166/304 (54%), Gaps = 19/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R LA LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LAALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAVKYDR--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L V I VP +FY Y KY + ++ +++P + ++ Sbjct: 186 SIEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D F LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 LWMV 293 + ++ Sbjct: 304 VGVL 307 >gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] Length = 307 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AV+ GG S+EREVSL+SG A +AL G D D + +HL+ D FNVL Sbjct: 15 VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 71 HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130 Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A + Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIG RG SR DFL K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304 >gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 319 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 169/299 (56%), Gaps = 24/299 (8%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S ER+VSL SG+ A AL G VS +DVD + L +PDL + +LHG Sbjct: 9 ILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHGAS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GEDG ++ +LELL++PY + S ++ +K +K V+++ GV + PS + + F + Sbjct: 69 GEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGV-LTPSYVTLPQSLFREL 127 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ ++ P P V+KP +GGS+LG+ ++ + +P L+ + +GD LIE+ Sbjct: 128 GARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQALVD--CFAYGDLALIEEA 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDF-----YSYELKYSSLNSTHVLPAKIPLDIYKE 226 + G E++ V+ S DVT A+P + Y Y+ +Y+ + + PA++ +I Sbjct: 186 ITGTEVSVSVV--ESPDVT--ALPAVEIITDGPYDYDARYNPGRTQYFTPARLDPEIADA 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 R+A AH +G R +SRSD + D +V++LE+NV PGMT S+ P+ +G S Sbjct: 242 AARVALTAHTTLGLRHVSRSDLIIDG-KGQVWFLEVNVAPGMTETSLLPQAVVASGQSL 299 >gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] Length = 319 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L A IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P P V Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P ++KP GSS+G+ K + L + + Q+L+EQ++ G E Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGM--AKVGGLVELIAAWREAARYDSQVLVEQWISGPEF 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + L + P + FY Y+ KY + ++ + +P + E++ L A A Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDA 256 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G +G R+D + D R FW LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314 Query: 297 SCLR 300 R Sbjct: 315 REAR 318 >gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 304 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P VC + Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 125 AVEVRQAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 176 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 232 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ RLA A +A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 233 EIARLALAAFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 292 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 293 DDLVWRILE 301 >gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 313 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 169/304 (55%), Gaps = 19/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ +++ P +KP GSS+ +I +K ++P L+++ ++ +++E+ Sbjct: 128 DDYEARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDR--IVVVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + G+ L V I VP +FY Y KY + ++ +++P + + ++ Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKV 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 245 LARRAFDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 Query: 290 LWMV 293 + ++ Sbjct: 304 VGVL 307 >gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] Length = 306 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 20/299 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58 +AVL GG S+EREVSL SG A + L+ G D +RS L LK D AF VL Sbjct: 10 VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERS----LDELKGFDRAFIVL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--F 116 HG GEDG VQ LEL++IPYT S +L A++MDK+R+K + + G+P +V++ F Sbjct: 66 HGRGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESF 125 Query: 117 TMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S I P ++KP GSS+G+ K + + L ++ + D +L+E +V Sbjct: 126 SPNSAEDIMARLGSPVMVKPACEGSSIGM--AKAEDAASLQKAIDTALQYDDTVLVEAWV 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++G+ +L + P FY YE KY S + + PA + D + ++ LA Sbjct: 184 HGPEFTVSILGEEALPAIRMETPNV-FYDYEAKYQSQTTQYHCPAGLSDDDEQALRALAL 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +A+G G R D + D W LE+N PGMT S+ P+ A G F L+ Sbjct: 243 RAFKAVGASGWGRVDVMRDADGS---WRLLEVNTVPGMTETSLVPKAANAVGVDFDTLV 298 >gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] Length = 323 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 159/307 (51%), Gaps = 24/307 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S+EREVSL SG +AL+ G D + LA + D A LHG F Sbjct: 15 VLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHGRF 74 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG------VPVCPSILVNRF 116 GEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K S G V + P V+ Sbjct: 75 GEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVSEV 134 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVD 173 + P ++KP + GS+LG+ +K +D LQ++ ++ + +L E++V Sbjct: 135 V----QRLGLPLIVKPAQEGSTLGLTKVKT-----VDQLQAAFDLAYKYDPNVLAEKFVS 185 Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT VMG+ +L V I P + Y Y KY + + P+ + D EVQ Sbjct: 186 GQELTVPVMGEGAGAHALPVIRIQAPDGN-YDYHNKYIGNETKYFCPSGLNSDFEAEVQA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L A+Q +GC G R+D L D S K + LE+N PGMT S+ P A +G + +L+ Sbjct: 245 LCVKAYQVLGCAGWGRADVLVDE-SGKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLV 303 Query: 290 LWMVEDA 296 L + A Sbjct: 304 LQIAASA 310 >gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] Length = 325 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV +GG S+EREVSL SG+A SAL AG +DV + + + D F LHG Sbjct: 26 VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IP+T S +LASAL+MDK+RSK V CG+P P ++ Sbjct: 86 RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPT-PKFRAMASAEEA 144 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +S P +KP + GSS+GI + +Q + Q+++ + +L+E++++G E Sbjct: 145 GSLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAYTQAAALDP--LVLVEEWIEGPEF 202 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D +L + FY Y+ KY + ++ + +P + D ++Q LA A + Sbjct: 203 TVSLLQDQALPAIGLCTDHV-FYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRV 261 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GCR R D + D + FW LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 262 LGCRTWGRVDIMQD--RQGEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRILMD 318 >gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 302 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L+ ++V I +D + ++ D+A LHG Sbjct: 3 VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ GV P I Sbjct: 63 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGV-ATPDWVHLIKGEEL 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + L+ P V+KP GGSS+G+ ++ ++ + + W+ ++ +IEQY+ G E Sbjct: 122 PLQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKWD--NESIIEQYLIGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ + L V I + F+ Y+ KY ST P ++PL I+ V + A ++++ Sbjct: 180 ITCPILNEQLLPVLSIK-HTAVFFDYQAKYDD-ASTVEEPVELPLAIHDRVAKAAMISYK 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C +R D L + LE+N PGMT S+ P+ A AG S+ LL ++E Sbjct: 238 ALRCTVYARVDMLIK--DGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIE 293 >gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c] gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 27/309 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P VC + Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167 + R ++ ++ P +IKP K GSS+G+ + L+ L+ + + + +LL Sbjct: 141 AVEVRQAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225 +EQ ++G ELT ++ + +L I VP+ +Y Y KY + ++ +V P LD Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+ RLA A +A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F Sbjct: 249 EIARLALAAFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308 Query: 286 RELLLWMVE 294 +L+ ++E Sbjct: 309 DDLVWRILE 317 >gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 12/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL+SG A +AL G D +R + +L+ L D A +LH Sbjct: 17 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLS-LDVDRALIMLH 75 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P + ++ + Sbjct: 76 GRGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFE 135 Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + ++KP + GSS+G+ + + L+ ++ + +Q+L+EQY+D Sbjct: 136 AGKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQ--LETAIQDAFKYDNQVLLEQYID 193 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T V+ +L ++ P + FY Y KY + + P+ + + ++ +LA Sbjct: 194 GPEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASR 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L Sbjct: 253 AFDAISGSGWGRIDVMQDN-QRQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVL 308 >gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] Length = 631 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/292 (37%), Positives = 155/292 (53%), Gaps = 6/292 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A ++L +G D L D F LHG Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LELL IPYT SG++AS+L MDK RSK V + G+PV +++ + + Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P +KP GSS+GI +K + +++ H ++ E+++ G E T Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAA--RHDPLVIAERFIGGGEYT 512 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD L V +I P ++FY +E KY ++ + P+ + ++Q LA A I Sbjct: 513 VAILGDQVLPVIKIE-PANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G +G R DFL + + LE N PGMT S+ P A AG SF EL+L Sbjct: 572 GGQGWGRVDFLMSEAGQP-YVLEANTSPGMTDHSLVPMAARQAGISFDELVL 622 >gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 310 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 161/304 (52%), Gaps = 13/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL S A ALE ++V +ID L + F LH Sbjct: 8 IALLCGGASGEREVSLLSAAAVEEALEKR-YEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G GE+G +Q E + +PYT G+L+SA++MDK +K +V S +P I V R Sbjct: 67 GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126 Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + + V+KP GS+LG+ ++ D L ++ +L+EQ++ G Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIV--DNGDDLACAIDTALELAPSVLVEQFISGR 184 Query: 176 ELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G V EI +P ++FY YE KY + H+ PA + ++ + +A Sbjct: 185 ELTVAVLGGEKPRVLPPIEI-IPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMAL 243 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH A+GC G+SR+D + D +R +++LE N PGMT S+ P+ A G +F EL + Sbjct: 244 GAHDALGCYGVSRTDCILDERNR-LWYLETNTIPGMTGTSLLPDAAKAVGITFDELCWNI 302 Query: 293 VEDA 296 +EDA Sbjct: 303 MEDA 306 >gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] Length = 313 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG+S+EREVSL SG L +AG D LA LK + AFN Sbjct: 12 VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERP---LAALKDEGYVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114 LHG +GE+G +Q L+ I YT +G+L SAL +DK R+K V G+P P +V + Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGD 128 Query: 115 RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + +++ P +KP GSS+ +I +K + L + H +L+E+ Sbjct: 129 DYAARAPEIVAKLGLPLFVKPASEGSSVAVIKVKDAAA--LPAALDEAARHDKIVLVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + GD L V I VP +FY Y KY + ++ +++P I EV+RL Sbjct: 187 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRL 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304 >gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] Length = 324 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 145/241 (60%), Gaps = 6/241 (2%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF +LHG +GEDG +Q LE+L +PY +G+ A+AL MDK +K+ ++ G+PV P + Sbjct: 78 DVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKRTLAHAGIPVVPWV 137 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + R + SPPY +KP GSS+GI ++ +++ L ++ W+ D++L+EQ Sbjct: 138 SLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAFRWD--DRVLVEQG 195 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++G+ EL ++G+ + + + + + S+FY Y KY+ + ++PA + D+ + +Q Sbjct: 196 LEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLIPAPVDADVARRLQ 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A A++ +G RG++R DF P ++ E+N PG TP S++P++ +G + L Sbjct: 256 EVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYPKLWQASGLEYEAL 314 Query: 289 L 289 L Sbjct: 315 L 315 >gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514] gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514] Length = 304 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+EREVSL +G A A AL G +V ++D + A ++ F LHG Sbjct: 12 ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 PP V+KP++ GSS+G+ + + D S L + + + Q+L+E+ + G E T Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKL----AEALRYDTQVLMEERILGRETT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++G+ L + E+ PK+ Y Y+ KY++ + ++ PA + +Q A A +AI Sbjct: 186 VGILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G R SR D + P V LE+N PGMT S+ P+ A AG + EL MV+ Sbjct: 245 GGRDYSRVDVMVRPNGEPVV-LEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVD 299 >gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 291 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 163/294 (55%), Gaps = 6/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S E E+S S K+ AL+ G +V ++++D ++ L KPD F LHG Sbjct: 3 VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE+ YT SA+ MDK +K+V+ + +PV F D Sbjct: 63 SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETF--FQGDK 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GS++GI V+K + S + ++ + +++IE+Y++G E+T Sbjct: 121 IEPVEIPCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI V ++ FY ++ KY + + +PA + L + +++++++ + + C Sbjct: 179 VLNGFALPPVEI-VTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G R DF D + + LE+N PGMT S+ P+ A AG F +L+ ++E Sbjct: 238 KGAIRIDFRIDKWNNP-YVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILE 290 >gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126] Length = 327 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 157/296 (53%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G D L L D A +LHG Sbjct: 22 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P + ++ ++ Sbjct: 82 RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + L+ ++ + +Q+L+EQY+DG Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQ--LETAIQDAFKYDNQVLLEQYIDG 199 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + FY Y KY + + P+ + + ++ +LA A Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L Sbjct: 259 FDAISGSGWGRIDVMQDN-QRQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVL 313 >gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] Length = 346 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 45/326 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S ER+VS++SG AL AG +V + VD + GL+ A + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F LHG GEDG +QA+L+ YT SG Sbjct: 66 VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 LASA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIV 185 Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + ++L + +GD++++E++V G E+T GV+ D +L V EI + + + Y Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+ Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288 N PGMT S+ P+ AA AG F EL Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326 >gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 52/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+SSER+VS SG A AL + G + +DV Sbjct: 3 IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62 Query: 39 ---------------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAIL 72 D+S ++ K D+ F LHG GE G VQA Sbjct: 63 VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 +L I YT + L+SA++MDK +K V+ GVPV + + P ++KP Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G+ ++ + + + L + W D++++EQ++ G E + GV+ +L + EI Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFSDGVIEGKALPIIEI 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A PK FY Y+ KY++ ++ PA+I ++++ A +A++A+G +R DF+ D Sbjct: 241 A-PKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMDK 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++ LE N PGMTP S+ P+ A G F +L Sbjct: 300 -DENIYCLEANTLPGMTPTSLLPQEAKVTGMDFEDL 334 >gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] Length = 310 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 24/302 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S EREVSL SG+A AL+ G++V IDVDR + VL ++A LHG Sbjct: 8 IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111 GEDG +Q +LE + IPYT + ASA+ MDK SK++ S G+P I Sbjct: 68 PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLI 168 LV+ F D +KPL GSS+GI + KD+ I + ++ S +H + ++ Sbjct: 128 DELVDHFLGD----FHGAAFVKPLDSGSSVGISRAVGKDELI-RGVAKALSVSH--RCMV 180 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-V 227 E+ ++G ELT ++ + + EI VP FY Y+ KY++ + +++PA D E V Sbjct: 181 ERAIEGRELTLSILDGEAFPLIEI-VPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAV 239 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ A+ GCRG+ R+DF+ D W LE+N PGMT +S+ P+ A G Sbjct: 240 VKIGLAAYHITGCRGLVRADFILD--GEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMP 297 Query: 287 EL 288 +L Sbjct: 298 QL 299 >gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] Length = 326 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 104/323 (32%), Positives = 169/323 (52%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VS+ S + S ++ +KV S+ VD++ Sbjct: 5 IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64 Query: 44 LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + +KPD A+ +HG GE+G++Q ELL IPY+ +L SAL+ +K + Q + Sbjct: 65 SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124 Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV + S+LV+ R + + +I P IKP GSS G+ +K + I L Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D +IE Y+DGIEL G + L +TE+ V K++F+ + KY+ T Sbjct: 183 QAAFAESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEV-VSKNEFFDFNAKYNG-QVT 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ VQ+L + +GCRGI R D++ K+ LEIN PGMT S Sbjct: 241 EITPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG +E++ ++ED Sbjct: 300 FIPQQARAAGIDMKEIMTDIIED 322 >gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315] gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315] Length = 313 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALEEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] Length = 300 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 159/298 (53%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG++QA+LE ++IPY+ G L S + MDK +K+++ S G+ + V Sbjct: 63 KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+ +IKK Q I + + ++ +++IE+Y+ G E+ Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAV--RLALDYDTEVMIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC +M L + I PK++F+ Y KY+ S ++ + + +++ +A + Sbjct: 181 TCCIMNGKVLPIIAIK-PKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238 Query: 238 IGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + V + LE+N PGMT S+FP+ A S+ +LL + E Sbjct: 239 LKCSVYVRVDMI---IKEGVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293 >gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis 108] gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis 108] Length = 364 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35 +AVL GG+S+E E+S+ S K+ +ED K +Q Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 36 IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + DR+ ++ + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLALAIHEA--FLYDTKILIEQAINAREIECAVLGNDDVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ E+N PG T +S++P++ ++G + +L+ Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341 >gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 342 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 104/323 (32%), Positives = 162/323 (50%), Gaps = 39/323 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------GLVLA---HLKP 51 +AVL GG S ER+VS+SS AL AG V ID R L+L H P Sbjct: 8 IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67 Query: 52 -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+AF LHG GEDG +QA+L+L +PYT SG + Sbjct: 68 PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++M+K +K++ SS G+ +++ D + P ++KP + GS++G+ ++ Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + ++ Q+++EQY+ G ELT GV+G +L V EI + + Y KY Sbjct: 188 PDELESAVRLARRFD--TQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQ 265 + + PA +P + QR+A AH + G SR+D D ++ + W LE+N Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLD--AQGILWCLEVNTL 303 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 PGMT S+ P+ AA +G +F +L Sbjct: 304 PGMTATSLLPQSAAASGIAFPQL 326 >gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 318 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 157/297 (52%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVS++SG+ L+D G D L AFNVLHG Sbjct: 12 VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 ++ +++ P +KP GSS+ +I +K + + ++ ++ +L+E+ ++ Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAIAHAAKFD--TIVLVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y+ KY S + +++P + +Q LA Sbjct: 190 GGEYTACIAGDLDLPVILI-VPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +GCR R+DF+ D F LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 249 AFEVLGCRDWGRADFMLDGEGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYEELIM 304 >gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2] gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2] Length = 305 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 169/296 (57%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 + V+MGG S+EREVSL +G+ + L+ + ++V I +D+ L+ + H D A L Sbjct: 3 IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ S GV + P+ L + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGV-LTPAGLCWQGMG 121 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P ++KP GGSS+GI ++ ++ + + ++ + + +L+E ++ G Sbjct: 122 DYDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKACALDQ--TILVEPFIQG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELTC ++ L + I S+++ Y+ KY + + + ++P I + V+ A + Sbjct: 180 TELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEEKV-IQLPPVIEQRVRETALAS 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ + C+ +R D + L + V + LE+N PGMT S+ P+ AA AG +F +LL Sbjct: 239 YRLLQCKVYARIDMI---LCQDVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLL 291 >gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct] Length = 347 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 45/326 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S ER+VS +SG AL AG +V + VD + GL+ A + Sbjct: 8 VAVLFGGSSEERDVSTASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F LHG GEDG +QA+L+ YT SG Sbjct: 66 VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 LASA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIV 185 Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + ++L + +GD++++E++V G E+T GV+ D +L V EI + + + Y Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+ Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288 N PGMT S+ P+ AA AG F EL Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326 >gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] Length = 303 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 25/307 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + + P + R M+ Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKD--IVEIPDFIEIREFME 120 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + L P V+KP + GSS+G+ + + D+ +I DL Q S +++++Y+ G Sbjct: 121 TSPL-GYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLPQYGS------VIVQEYIPGR 173 Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQR 229 E+T ++ G L + E+ PK FY Y KY+ + +LPA PL+ +E V+ Sbjct: 174 EMTVSILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKE 230 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A GCRG R D +F + + ++LEIN PG+T S P A G F EL+ Sbjct: 231 TALKAFVEAGCRGFGRVDGIFS--NGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELV 288 Query: 290 LWMVEDA 296 +++ A Sbjct: 289 EIILKSA 295 >gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421] gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421] Length = 368 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 34/308 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL ++E +VS+ G AL KV Q L+ D+ F VLHG+ Sbjct: 62 AVLQIHTAAENQVSIIPGGGTKGAL-----KVGQ-----------RFLETDVIFPVLHGS 105 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 FGEDG +Q + E+ E+PY G+LAS+LSMDK ++K + + G+P+ P V + T D Q Sbjct: 106 FGEDGTIQGLFEMAELPYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQ 165 Query: 122 -----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP + GSS+G + K + ++ SW++ ++L+E Sbjct: 166 SERDLLIQEIEKELDYPLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDY--KILVEA 223 Query: 171 YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKE 226 + E+ C V G+ + EI +P FY YE KY+ + + +PA+I D K Sbjct: 224 CIPAREIECSVTGNETCIAYTPGEI-IPSHSFYDYEAKYTDPDGAILKIPAEITDDERKT 282 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +A A++ + G +R DF D ++K++ EIN PG T +S+FP+M A +G + Sbjct: 283 IREIAMKAYKTLDLSGFARVDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYP 342 Query: 287 ELLLWMVE 294 +L+ +++ Sbjct: 343 DLITLLLQ 350 >gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2] gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1] gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] Length = 346 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 45/326 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S ER+VS++SG AL AG +V + VD + GL+ A + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F LHG GEDG +QA+L+ YT SG Sbjct: 66 VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 LASA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIV 185 Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + ++L + +GD++++E++V G E+T GV+ D +L V EI + + + Y Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+ Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288 N PGMT S+ P+ AA AG F EL Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326 >gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] Length = 313 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G + EL+ Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43] Length = 312 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG SSEREVSL+SG+ L DAG D + LA LK + AFN Sbjct: 12 VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +Q +++ P +KP GSS+ + +K + L + H +++E+ Sbjct: 129 DYAARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P + E +R+ Sbjct: 187 IEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRV 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 246 ARRAFDVLGCADWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304 >gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] Length = 313 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G + EL+ Sbjct: 245 IARRAFAVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELV 303 Query: 290 L 290 + Sbjct: 304 V 304 >gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 316 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 23/312 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVLHG 60 VL GG S EREVSL+SGKA A GF V ++ + V ++ D+ F LHG Sbjct: 5 VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 ++GEDG +QA L+ +IPYT SG A L+M+K+ SK G+P + N F Sbjct: 65 SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124 Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 L VIKP + GS+LG+ VI + + +SS+ D L+I Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLASSY---DSLII 181 Query: 169 -EQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 E+Y+ G E+T V D + + EI VPK+ YSY+ KY+ NS + +PA++ I Sbjct: 182 AERYISGKEITVAVWDDGKPQAFPIIEI-VPKNSLYSYKAKYTPGNSAYFVPAQLEDSIA 240 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 K+ Q A +AH ++GC SR D D + LE+N PG+T S+ P+ A G+ Sbjct: 241 KKAQEAALMAHISLGCELYSRVDMRLDTQGNP-YVLEVNTVPGLTSTSLVPKAAKAIGWD 299 Query: 285 FRELLLWMVEDA 296 F + ++++ Sbjct: 300 FDRFVKELIQNT 311 >gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] Length = 302 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 11/297 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG S EREVSLS K AL + G V +D + ++L D AF LHG+ Sbjct: 5 LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119 GEDGL+QA+L + PY + +S L+++K +K V G+ P + Sbjct: 65 PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 Q L PP IKP GGSSLG+ + + + + + ++ GD L+E+Y GIE+TC Sbjct: 125 LQDL-EPPVFIKPNSGGSSLGMTFARTAEELEKGI--ETVFSLGDSALVEEYTKGIEVTC 181 Query: 180 GVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ + + I P ++F+ Y KY+ + + PA I + +++Q++ AH+ + Sbjct: 182 GILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLL 241 Query: 239 GCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G SR+DF+ +S V + LE+N PGMTP S+ P+ A AGYSF EL+ ++E Sbjct: 242 GLTDYSRADFI---ISEGVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIE 295 >gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 315 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 167/306 (54%), Gaps = 24/306 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V Q DVD S+ L + PD F VLHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119 GEDG ++ +L+L +PY + A + DK + +V S G+ S+++ T + Sbjct: 69 GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + L+ P V+KP +GGS+LG +++ +P ++ + + +G LIE+YV Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAMV--NCYAYGPVALIERYV 186 Query: 173 DGIELTCGVM--GDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ V+ GD +L EI P S FY YE +Y++ + V+PA++ + Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQ-PDSGFYDYEARYTAGATQFVVPARLDAAVAAACA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSF-- 285 + A AH+A+G R +SRSD + D ++ V W LE+NV PGMT S+ P A AG Sbjct: 246 QAAVTAHRALGLRDLSRSDLVVD--AQGVPWFLEVNVAPGMTETSLVPLAAEAAGIELGV 303 Query: 286 --RELL 289 R+LL Sbjct: 304 LCRDLL 309 >gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] Length = 364 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35 +AVL GG+S+E E+S+ S K+ +ED K +Q Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 36 IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + DR+ ++ + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKVLIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ E+N PG T +S++P++ ++G + +L+ Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341 >gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] Length = 311 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 161/297 (54%), Gaps = 15/297 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVLMGG+S E ++S +G A AL G+ +++ + S VL LK ++ F Sbjct: 8 VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSC--VLKQLKAVGAEVVFIA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PSILVN 114 LHG +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V GV + P L N Sbjct: 66 LHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKN 125 Query: 115 RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + P V+KP GS++G+ ++ + + + L + + ++L E Y Sbjct: 126 GIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIE--SRILAEAY 183 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +DG E T V+ +L + +I P S Y + KY+S + +++PA +P E+ R+A Sbjct: 184 LDGKEFTIAVLNGKALPIIQIC-PHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMA 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L ++A C G+ R DF D F LE N PGMT S+ P+ AA G F L Sbjct: 243 ILGYEAAECSGVVRFDFRTDKRGTP-FLLEANSIPGMTETSLVPKAAAAIGMDFPSL 298 >gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136] Length = 307 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 162/298 (54%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SER VSL S ++ AL+ G +V +IDV + V + +A N++HG Sbjct: 8 IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTVPGDVV--VAVNMIHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QA+LE + YT +G+ S ++ DK SK+ + GVP P V + Sbjct: 66 TFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVP-TPQSQVLKLDGVD 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q ++ P V+KP + GSS+G+ ++ ++ + L + + +G L+E++VDG ELT G Sbjct: 125 QLRLTLPVVVKPPREGSSVGVHIVHTEEELATAL--ADAKQYGQDTLVEEFVDGKELTVG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G +L V I P S FY KY ++ T + PA + ++ + VQ A A + Sbjct: 183 VIGGEALPVIHIE-PVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAMK 241 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G R D + + F LEIN PGMT S+ P+ A AG F +L+ ++E Sbjct: 242 AVGVEVYGRVDVMLRKDGQP-FVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIE 298 >gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3] gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 360 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 154/289 (53%), Gaps = 17/289 (5%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 SS + A+AL+ +Q +R+ LA L D+AF LHG+FGEDG +Q LE Sbjct: 70 SSREETAAALQQMVRNAAQAPCNRN----LAALGVDVAFLALHGSFGEDGRMQGFLETCG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127 IPYT G+LASAL+MDK +K V+ G+ V + N + +S P Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186 +KP GSS+GI + + + L + + + ++++E V G E+ V+G+A Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAACALDW--KVVVESTVKGREIEVAVLGNADP 243 Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V P +FY ++ KY ++ +PA+IP + +EV+R A A++A+GC G++R Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF D + V E+N PG T +S++P+M +G S+R L+ ++E Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLE 352 >gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] Length = 328 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 163/302 (53%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ERE+SL SG A +ALEDAG IDV +V + D AF +LHG Sbjct: 19 VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK------QVVSSCGVPVCPSILVN 114 GEDG +QA+LE L IPYT S + +SAL+MDK+R+K S+ +P ++ Sbjct: 79 PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138 Query: 115 R---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 R F + + L ++KP GSS+G+ +K + + ++++ + +L E+ Sbjct: 139 RESDFVAELKRL-GGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQ--GSVLAERL 195 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ +L + S FY + KY + ++ ++ P + + +E+++LA Sbjct: 196 IVGAEYTVAILDGEALPPIRLETDHS-FYDFNAKYIAEDTRYICPCGLSAEKEQELKQLA 254 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE+N PGMT S+ P A G SF EL++ Sbjct: 255 LTAFNVLGCRGWGRVDVMADA-QQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVT 313 Query: 292 MV 293 ++ Sbjct: 314 IL 315 >gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555] gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016] gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555] gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 297 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 164/294 (55%), Gaps = 12/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SGK+ + ++ +++ I +D+ + D AF LHG Sbjct: 3 VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG++Q++ + ++IPY+ L S + MDK SK+++ S + I + +D Sbjct: 63 KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +L + P V+KP GGSS+ +I+K + I + ++N+ ++++IE+Y++G E+ Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDI--EEAARLAFNYDEEVMIEKYIEGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQ 236 TC ++ +L + I K F+ Y KY+ S V+ + PL +++ ++ + Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIVVEFEKPLQ--SKIEEISLKCWE 238 Query: 237 AIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 C+G R D + L KV + LE+N PG+T S+FP+ A SF ELL Sbjct: 239 LFKCKGYVRVDMI---LKDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELL 289 >gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1] Length = 311 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 18/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 MAVL GG+S EREVSL SG+ A AL G V + DVD ++ L +PD+ LHG Sbjct: 1 MAVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHG 60 Query: 61 NFGEDGLVQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117 GE+G VQ ILELL+IP+ T SG A ++++ V + P ++ + F Sbjct: 61 GEGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFRE 120 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q ++ P V+KP +GGS+LG+ V++ +P ++ SS+ + D +L EQ Sbjct: 121 LGAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAMV--SSFAYADTVLAEQ 178 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +V G E+ V+ D +L E+ VP S FY Y +Y+ +T PA++ D+ + Sbjct: 179 FVAGTEVAVSVVHDGDEARALPPVEVEVP-SGFYDYTSRYTPGAATFHCPARLSSDVQQT 237 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A AH+ +G R +SR D + D R V LE+NV PG+T S+ P A G Sbjct: 238 LAETALTAHRLLGMRDVSRMDAIVDGDGR-VHVLEMNVSPGLTDTSLLPTAVAADGSDLA 296 Query: 287 ELLLWMVEDASC 298 + +V+ A+ Sbjct: 297 TVYQALVDRAAT 308 >gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] Length = 313 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 156/300 (52%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL GG+S+EREVSL+SG+ L +AG D L+ LK + AFN Sbjct: 12 VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERP---LSALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT G+L SAL +DK R+K V G+P P V R Sbjct: 69 LHGGYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +++ P +KP GSS+ +I +K + L + H +++E+ Sbjct: 129 DHAARAAEIVAKLGLPLFVKPASEGSSVAVIKVKDAAA--LPAALDEAGRHDRIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + GD L V I VP +FY Y KY + ++ +++P I E +RL Sbjct: 187 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRL 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A + +GC G R+DF+ D F LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 246 ARRAFEVLGCSGWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304 >gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM 6725] gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725] Length = 364 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 174/338 (51%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG+S+E E+S+ S K+ ++ ++V I + + +L Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ E+N PG T +S++P++ ++G + +L+ Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341 >gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 332 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV+ GG S+ER VSL SG A AL+ G + D D+ V + + D FNVLH Sbjct: 38 VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKNY---DRVFNVLH 94 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+ CG+ P ++ T D Sbjct: 95 GRGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADT-D 153 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q +++ P ++KP+ GSS+G+ + +P ++ GD ++ E+++ G E Sbjct: 154 WQQIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAG--CGDVVMAEKWITGRE 211 Query: 177 LTCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ D + V + S+FY YE KY+ ++ + +P + + +Q L+ A Sbjct: 212 FTIVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAF 271 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A+ +G R D + D FW LEIN PGMT S+ P A G +F E L W + Sbjct: 272 KAVDAKGWGRIDAMQD--EEGNFWLLEINTVPGMTSHSLVPMAAKARGMNF-EQLCWHI 327 >gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] Length = 346 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 163/324 (50%), Gaps = 41/324 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S ER+VS++SG AL AG +V + VD + GL+ A + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHEV--LAVDTASGLLGAEEERRLLASKVKE 65 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F LHG GEDG +QA+L+ YT SG Sbjct: 66 VPPDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 LASA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE Sbjct: 186 HSQAELQPAI--ELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEH 243 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + V PA +P + E QRLA H+A+ G SR+DF D R ++ LE+N Sbjct: 244 KYQAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNT 302 Query: 265 QPGMTPVSIFPEMAAYAGYSFREL 288 PGMT S+ P+ AA AG F EL Sbjct: 303 LPGMTATSLLPQAAAAAGIGFAEL 326 >gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] Length = 308 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S+EREVSL SG A +AL D +R + +L+ L D AF VLH Sbjct: 9 VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLS-LGVDRAFIVLH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT 117 G GEDG +Q L+ L +PYT S +L AL+MDK+R+KQ+ S +PV PSI+ V Sbjct: 68 GRGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQ 127 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D+ ++ ++KP GSS+G+ V ++ LD + + +L+E++++G Sbjct: 128 WDAAQILKQLGDKVIVKPALEGSSIGMSVAS--EAGELDAAIREALRYQSDVLVERWING 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ D +L V + P FY + KY + ++ + PA + + + ++ LA LA Sbjct: 186 KEYTVALLNDEALPVIRLQTPHQ-FYDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AI RG R D + D + F LE N PGMT S+ P A G SF E L+W + Sbjct: 245 FSAIDGRGWGRIDAMRDD-EGQWFLLEANAVPGMTEKSLVPMAAKQYGLSF-EQLVWNI 301 >gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] Length = 294 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 15/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVL 58 +AV+ GG SSERE+S+ +G A + L F+ I D + + +K P + F L Sbjct: 3 VAVVCGGNSSEREISIITGNAVYNGLLK-NFEAECIVCDNARDCLDKIIKSSPSVVFIAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGE+G +QA LE L I +T S ++M+K +K ++ +P L+ + Sbjct: 62 HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLIKKVE- 120 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGI 175 + +++ P IKP GSS+ + + I +LL+ ++L+IE+ + G Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANNENQAKYISQNLLKKH-----NELIIEKRLSGK 175 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT GV+ +L + EI PKS FY Y+ KY+ + +++PA + +I K ++ +A A Sbjct: 176 ELTVGVLFGKALPIIEIR-PKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAF 234 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AIGC+ +R DF+ D + LEIN PGMTP S+ P+ A AG SF EL +VE Sbjct: 235 EAIGCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEG 292 Query: 296 A 296 A Sbjct: 293 A 293 >gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1] gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1] Length = 303 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 163/303 (53%), Gaps = 17/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + + P + R M+ Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKD--IVEIPDFIEIREFME 120 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + L P V+KP + GSS+G+ + + D+ L+ +G +++++Y+ G E+T Sbjct: 121 TSPL-GYPCVVKPRREGSSIGVFICESDEEFQ-HALKEDLPRYG-SVIVQKYIPGREMTV 177 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQRLAFL 233 ++ G L + E+ PK FY Y KY+ + +LPA PL+ +E V+ A Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKETALK 234 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A GCRG R D +F + + ++LEIN PG+T S P A G F EL+ ++ Sbjct: 235 AFVEAGCRGFGRVDGIFS--NGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIIL 292 Query: 294 EDA 296 + A Sbjct: 293 KSA 295 >gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523] Length = 296 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFT 117 G GE+G V A+LE+L I +T S + +S ++MDKM SK++ P+ + F Sbjct: 66 GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPMAKFLTAKLFA 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+ Sbjct: 126 EDE---ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEI 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D I P+++FY YE KYS + H P+ + EV++LA A+ Sbjct: 180 TVAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDL 237 Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G +R DF++D R F+ +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 238 LGCSGHARVDFIYD--DRGNFYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] Length = 332 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 162/298 (54%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL++G+ S L+ ++V I++D L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 +GEDG VQ L+ L IPYT S +L+S++ MDK SK+++ G+ ++V Sbjct: 63 KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + L P V+KP GGSS+G +++ + + ++ W+ ++IEQ++DG E Sbjct: 123 AADVEGL-GFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQWDRA--VMIEQFIDGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I P S+F+ Y KY + + ++P ++ K V A ++ Sbjct: 180 ITCPILNGEMLPIVSIK-PNSEFFDYTSKYVEGEADEQV-IELPPELRKAVNAAAIQCYK 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C +R D + + LE+N PG+T S+ P A AG+SF LL ++E Sbjct: 238 ALKCSVYARIDIILK--DNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIE 293 >gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] Length = 302 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 6/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG SSEREVSL SG+A AL + G V ID D ++ L + DL F LHG Sbjct: 8 VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L++PYT SG+LASAL+MDK+R KQ+ G+P L+ + S Sbjct: 68 PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + ++KP GSS+G+ + + +S +N ++ E + G E T Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAAWADASQYNTA--VIAEPLLPGPEYT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L I ++FY Y+ KY S + ++ P+++ +E+Q L A ++ Sbjct: 186 VAILDGQVLPSIRIE-SNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 GCRG R D + D + LE+N PGMT S+ P A AG SF +L+ Sbjct: 245 GCRGWGRVDVMVDHQGQFQL-LEVNTVPGMTSHSLVPMAAKAAGLSFDQLV 294 >gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 364 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 105/346 (30%), Positives = 175/346 (50%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF------------------KVSQIDVDRSV 42 +AVL GG+S+E EVS+ S K+ L+ + K+ +D ++ Sbjct: 6 VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65 Query: 43 GLVLAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + PD + F VLHG GEDG VQ +LEL IPY Sbjct: 66 YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPL 133 G+L+SAL MDK +K++ G+P +++ + F + S P +KP Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI K KD+ I L ++ + ++LIEQ ++ E+ C V+G++ + V+ + Sbjct: 186 NSGSSVGISKAKDKDELI---LAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSAL 242 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FYSYE KY +S ++PAK+ + E++ LA ++ C G++R DF Sbjct: 243 GEIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + KV++ E+N PG T +S++P++ Y+G + +LL +++ A Sbjct: 303 DKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 308 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 9/292 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ + + R Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + LI P V+KP GGSS+G+ ++ ++ + + W+ ++++IEQY+ G E+ Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKWD--NEIIIEQYMIGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ D L V I + F+ Y+ KY ST P ++PL I+ V + A ++++ Sbjct: 188 TCPILNDKLLPVLSIK-HTAVFFDYQAKYDD-ASTIEEPVELPLAIHDRVAKAAMTSYKS 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL Sbjct: 246 LKCSVYARVDMLIK--EGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALL 295 >gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 168/335 (50%), Gaps = 46/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDV------------- 38 + VL GG S+EREVS++SG AL D F + ID+ Sbjct: 7 IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66 Query: 39 -------------DRSV----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 DR ++ K D+ F LHG GEDG QA +L I YT Sbjct: 67 KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSL 139 SG LASA+ MDK +KQ+ S GVP S+ + + T + + P V+K GGSS+ Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G++++ ++ D ++ + + +Q+L+E ++ G E + GV+ +L V EI +P+ + Sbjct: 187 GVVLVHQESEYE-DAVK-TCFELDNQILVEDFIKGREFSIGVINKKALPVVEI-IPRDGW 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY+ + V PA + ++ K++Q++A A AIGC +R+D + D +F Sbjct: 244 YDYKNKYNGA-TEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 LE+N PGMT S+ P+ A G F L ++VE Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVE 336 >gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] Length = 364 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 166/339 (48%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39 +A+L GG S E EVS S A L+ F+V ++V Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68 Query: 40 RSVGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 G V+ L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V N + + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196 GI + ++ L ++ + +++IEQ ++ E+ CGV G+ S EI + Sbjct: 189 GISKVHDERG--LKKACELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245 Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +FY YE KY + +PA++ + + V+ LA A++A+ C G +R DFL D + Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETE 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344 >gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121] gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121] Length = 320 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 166/299 (55%), Gaps = 17/299 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLV--LAHLKPDLAFNV 57 V+ GG +EREVSL SG +AL+++G++ + +D+ D S+ V L DLAF Sbjct: 10 VIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAFIA 69 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QA+LEL+ PYT S LA +MDK+ SK+ GVP P+ L R Sbjct: 70 LHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPT-PTYLAFRAP 128 Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 S + ++ P ++KP + GS++GI K + L+ + + + +L+EQ++ Sbjct: 129 DASDIDAIEDELAYPVIVKPSREGSTIGI--NKANDRTQLESALAKAREYDSDVLVEQFI 186 Query: 173 DGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G E T ++ D + V + A + + Y Y+ KY + ++ ++LP+ + D VQ++A Sbjct: 187 AGPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKIA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+Q++GC G R D + D VFW LE+N PGMT S+ P AAY S+ L+ Sbjct: 247 LDAYQSLGCSGWGRVDVMQD--QAGVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALV 303 >gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588] gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588] Length = 329 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/330 (31%), Positives = 170/330 (51%), Gaps = 36/330 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDL 53 +A++ GG S E +S+ S L+ + + V +I V R S G ++A + D Sbjct: 5 IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64 Query: 54 AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + +HG GEDG +Q E+L IP+T G++ SAL+ +K +VV Sbjct: 65 TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124 Query: 101 SSCGVPVCPSILVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 +S GV V S V+ F D Q ++ P +KP +GGSS+G+ + + + + Sbjct: 125 ASLGV-VNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAI 183 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 ++N Q+LIE++V G E+TCG+ L VTEI + +F+ YE KY+ Sbjct: 184 --EKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEI-ISSKEFFDYEAKYTPGV 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S V PA+ P +I ++Q A + + CRGI R DF+++ S ++F+LE+N PG + Sbjct: 241 SREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSE 300 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SI P+ AG + +E ++E+ CLR Sbjct: 301 NSIVPQQVRAAGKTLQEFYGTLIEE--CLR 328 >gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1] gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1] Length = 309 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 162/294 (55%), Gaps = 14/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER+VSL SG+A AL +G + D +RSV ++ + D AF VLH Sbjct: 10 VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTELVGY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L+IPYT +G+ SA+ MDK+++KQ+ +P P +V++ + D Sbjct: 67 GRGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDS-D 125 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +++ P +IKP+ GSS+G+ ++K + + ++++ H ++ E+++ G E Sbjct: 126 LNEIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKATA--HDAIVMAEKWITGRE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T V+ +L V + P+ FY Y+ KY + + +P+ + K++Q L A Sbjct: 184 YTIVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAF 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G R D + D FW LEIN PGMT S+ P+ A G F L Sbjct: 244 HTVGASGWGRVDAMQDEHGN--FWLLEINTVPGMTSHSLVPKAAQAIGIDFDAL 295 >gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] Length = 300 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 19/303 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L+ AG D R L + F L+G Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 G +Q +LE L++PYT S ++ASAL+MDK+RSKQV + G+PV P + ++R Sbjct: 65 R----GSLQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 TMD+ H I+ P ++KP + GSS+G+ K + D + H D++LIE++ Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGM--SKVSEPCEFDPALVEALRHDDEILIEKW 178 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD I + + FY YE+KY S + + P+ + + + + L Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADA-FYDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D S + LE N PG S+ P A AG SF L++ Sbjct: 238 RRAYKALGCSGWGRVDVIQD-TSGEFCLLEANTAPGSH--SLTPMAACQAGMSFSPLVVR 294 Query: 292 MVE 294 ++E Sbjct: 295 ILE 297 >gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] Length = 314 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 20/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAF 55 + VL GG S EREVSL SG ASAL + G+ V +ID L + + +P L F Sbjct: 4 IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG GE+G +QA L L I +T SG AS SMDK SK + + G+PV IL+ Sbjct: 64 NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123 Query: 116 FTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 ++ + P ++KP GSS+GI ++ + + + ++ ++H Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSH--S 181 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+E+Y+ G ELT ++ + V EI P +Y Y KY+ + + PA+I + K Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIK-PLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +Q A +A G G +R DF +D L K ++LE+N PGMT +S+ P A AG SF Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298 Query: 286 RELL 289 +ELL Sbjct: 299 QELL 302 >gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 297 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P L +R Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + IS P +KP GGSS+ +K + + Q+S HG +++IEQ+V G E+T Sbjct: 126 ADE--ISFPVAVKPSSGGSSIATFKVKSFEELENAYQQAS--KHG-EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + I P ++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNNDVYSSVWIE-PLNEFYDYESKYSGKSIYHA-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 239 GCKGHARVDFIYDD-KGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] Length = 388 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 175/353 (49%), Gaps = 62/353 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------AHL---- 49 + VL GG S+E EVS +S A AL G++V + V R L L AH+ Sbjct: 20 IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79 Query: 50 ----------------------KP------------------DLAFNVLHGNFGEDGLVQ 69 +P D+ F VLHG +GEDG+VQ Sbjct: 80 AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124 +LE L +PY GILASA+ MDK+ K+ + + GVP+ P + + R T D + L+ Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199 Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP + GSS+GI + +D + + + H + +++EQ V G EL CGV+ Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAV--EEALRHDNLVVVEQGVTGRELECGVL 257 Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + + + + ++ Y+ KY V+PA +P ++ + ++ L+ A AIG Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G++R DFL+D + +++ E+N PG T S++P++ A AG +++++ +V Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLV 370 >gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578] Length = 364 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 166/339 (48%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39 +A+L GG S E EVS S A L+ F+V ++V Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68 Query: 40 RSVGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 G V+ L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V N + + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196 GI + ++ L ++ + +++IEQ ++ E+ CGV G+ S EI + Sbjct: 189 GISKVHDERG--LKKACELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245 Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +FY YE KY + +PA++ + + V+ +A A++A+ C G +R DFL D + Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETE 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344 >gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] Length = 322 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 102/312 (32%), Positives = 166/312 (53%), Gaps = 29/312 (9%) Query: 3 VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDR-SVGLVLAHLKP 51 +L GG E EVSLSS + +A+ +D + + + + G+ P Sbjct: 5 LLAGGPPGEHEVSLSSARGVLAAMPHPTELVVIAKDGRWLLGEDAYEALRAGVAEQGTHP 64 Query: 52 ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D+ F +LHG GEDG++Q L+LL PY +G+ +SAL MDK K+V+ Sbjct: 65 FPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKRVLR 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 G+PV P + + + Q PPY +KP GSS+GI +K DQ L ++ +W+ Sbjct: 125 QAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAFAWD 184 Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D++L+EQ ++G+ EL ++G+ + V EI +S+FY YE KY+ + LPA Sbjct: 185 --DKVLVEQGIEGVRELEVALLGNIHAEASVVGEITY-QSEFYDYETKYTEGKAQLHLPA 241 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 IP ++ E++ A A++ +G RG++R DF P +++ E N PG TP S++P++ Sbjct: 242 PIPPELSDEIRATALEAYRILGVRGMARVDFFLSPQG-ELYLNEFNTIPGFTPTSMYPKL 300 Query: 278 AAYAGYSFRELL 289 G ++ +LL Sbjct: 301 WQATGLAYPDLL 312 >gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 297 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P L +R Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + IS P +KP GGSS+ +K + + Q+S HG +++IEQ+V G E+T Sbjct: 126 ADE--ISFPVAVKPSSGGSSIATFKVKSLEELENAYQQAS--KHG-EVMIEQWVTGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + I P ++FY YE KYS + H P+ + EV++LA A+ + Sbjct: 181 VAIVNNDVYSSVWIE-PLNEFYDYESKYSGKSIYHA-PSGLCEQKELEVRQLAKKAYDLL 238 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 239 GCKGHARVDFIYDD-KGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2] gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 303 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 161/298 (54%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL +G+ + L+ ++V I+++ L+ D A LHG Sbjct: 4 IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 +GEDG VQ LE L IPY+ G+L+S++SMDK +K+++ G+ I V Sbjct: 64 KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ ++K + + ++ W+ D ++IEQ+V G E+ Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKWD--DSVMIEQFVGGEEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I S+F+ ++ KY +T + ++P D+ V+ A ++A Sbjct: 182 TCAVLSGKLLPIVSIKA-NSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C SR D + D + + LE N PG+T S+ P+ A AG F ELL ++++ Sbjct: 240 LKCSVYSRIDMIIKDGVP---YVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIID 294 >gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 363 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 SVG + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +LASA MDK +K+++ G+ V P +++NR F + L S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ A + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 V +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F +R++ E+N PG T +S++P++ G S+ EL+ ++ Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLI 344 >gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 299 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 20/301 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPDLAFNVL 58 +L GG S EREVSL G+ A+AL++ G V+ D +R + + H D AF L Sbjct: 5 LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREH---DAAFINL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 HG GEDGLVQAIL+ + PY +G S L++ K ++Q+ G+ + + + R Sbjct: 62 HGAPGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPG 121 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + D Q+ P +K GGSSL + + ++ + L +S ++ G++ ++E V Sbjct: 122 PNWKPDLQY----PMFVKSNTGGSSLHLSRVTNEEELYTAL--NSLFSMGEEAIVETAVV 175 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+TCGV+G+ +L + V K +++ Y KY+ + + PA I + +VQ A Sbjct: 176 GREVTCGVLGEEAL-APILVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALR 234 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH A+G +G SR+DF+ ++ LE+N PGMT S+ P AA G SF +L+ ++ Sbjct: 235 AHHALGLKGYSRADFILQD-DGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLL 293 Query: 294 E 294 E Sbjct: 294 E 294 >gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8] gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8] gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] Length = 303 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 17/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + + + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKT 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S + P V+KP + GSS+G+ V + D+ L+ +G +++++Y+ G E+T Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFVCESDEEFQ-HALKEDLPRYG-SVIVQKYIPGREMTV 177 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQRLAFL 233 ++ G L V E+ PK FY Y KY+ + +LPA PL+ +E V+ +A Sbjct: 178 SILETEKGFEILPVLELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKEMALK 234 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A GCRG R D +F + ++LEIN PG+T S P A G F EL+ ++ Sbjct: 235 AFVEAGCRGFGRVDGIFS--DGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIIL 292 Query: 294 EDA 296 + A Sbjct: 293 KSA 295 >gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 364 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 175/338 (51%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35 +AVL GG+S+E E+S+ S K+ +ED K +Q Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65 Query: 36 IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + DR+ ++ + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ E+N PG T +S++P++ ++ + +L+ Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLI 341 >gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49] Length = 313 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 161/297 (54%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L + AF LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ ++ Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDRIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 249 AFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSVGISYSELVV 304 >gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4] Length = 351 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 168/345 (48%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG+S+ER+VS +G A AL + G +V +DV DRS + Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 46 LA-----HLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + + PDLA F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-ISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + + D L I P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W + L++E+YV G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDE-NENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] Length = 307 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 160/285 (56%), Gaps = 10/285 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +AVL+GG S+ER+VSL SG+ + AL G S DVD + +A L+ D AFN LH Sbjct: 11 IAVLLGGTSAERDVSLLSGRTVSDALR--GLDYSVRDVDPADADWVAQLQGVDYAFNALH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE L I YT SG+L SAL+MDK RSKQ+ G+ +++ T D Sbjct: 69 GPGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADT-D 127 Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q +I +KP GSS+G+ +S+ +++++ G ++ E++++G E Sbjct: 128 WQAVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEY 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L + V +++FY Y+ KY S ++++ P+ + +V +A A ++ Sbjct: 186 TVAILGDEALPSIRM-VTENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRS 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +GC G R D + D R F LE+N PGMT S+ P A AG Sbjct: 245 LGCAGWGRVDTMRDSDGR-FFVLEVNTIPGMTSHSLVPMAARQAG 288 >gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491] gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis WUE 2594] Length = 304 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHFQGEIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] Length = 343 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 102 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 103 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 162 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 163 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 220 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 221 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 279 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 280 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 338 Query: 295 DA 296 A Sbjct: 339 TA 340 >gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] Length = 302 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 157/295 (53%), Gaps = 7/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61 ++ GG S+ER+VS+S GKA A+AL G +V D + L + D F LHG Sbjct: 5 LIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS- 120 GEDGL+QA+L+ L PY SG S L++DK +K + + G+ LV ++ Sbjct: 65 PGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREENW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P IKP +GGSSLG+ + + + L Q ++ +L+E+ V G E+TC Sbjct: 125 QPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQLSQQLQFSSA--VLLEEAVTGKEVTCA 182 Query: 181 VMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ +L + I ++ F+ Y KY+ + + PA + + +Q+ A AH+ +G Sbjct: 183 VVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRILG 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G SR+DF+ + F LE N PGMTP S+ P+ AA G F LL +++ Sbjct: 243 LTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQ 295 >gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275] gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis 8013] gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579] gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385] gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945] gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013] gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136] gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149] gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196] gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33] Length = 304 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 364 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 175/338 (51%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35 +AVL GG+S+E E+S+ S K+ +ED K +Q Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 36 IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + DR+ ++ + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V N ++ + I S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ + + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + KV++ EIN PG T +S++P++ ++ + +L+ Sbjct: 304 KDTNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLI 341 >gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 349 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 162/331 (48%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG SSE EVSL S A + + I + R+ Sbjct: 6 IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65 Query: 42 ---VGLVLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + V L+P D VLHG GEDG VQ ++EL +IP Sbjct: 66 QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G+LASAL MDK R+ Q+V + G+ V S+LV+ + ++ P +KPLK GSS G Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + K + + L ++N+ +++++E+ V+G E+ C ++G+ L V E+ + Sbjct: 186 ISKVVKMEELTKAL--EYAFNYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ Y+ KY+ ST +PA+I +++Q A + +Q + C+ +R D P + VF Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTPNNEIVF 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S FP+M G+ F EL+ Sbjct: 304 N-EVNTIPGFTDHSRFPQMMKGVGFEFSELI 333 >gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153] Length = 304 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] Length = 473 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/260 (35%), Positives = 151/260 (58%), Gaps = 18/260 (6%) Query: 49 LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 L+P D+ F VLHG FGEDG VQ +LEL IPY +G+L SA+ MDK K++ + G+PV Sbjct: 163 LEPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPV 222 Query: 108 CPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 P ++V R+ + +I P KP GSS+ I + + + L ++ Sbjct: 223 VPFLVVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAF 282 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 +++ ++++E+ VD EL V+G+ ASL EI P+++FY+YE KY+ + + Sbjct: 283 AYDR--KVVVERGVDARELEISVLGNDEPVASLP-GEIR-PRAEFYTYEAKYTEGGAELI 338 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA +P + E+QRLA A QAI G++R DF + + ++ EIN PG T +S++ Sbjct: 339 VPASLPPRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMY 398 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P++ AG S+R+L+ ++E Sbjct: 399 PKLWEAAGLSYRDLITRLIE 418 >gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] Length = 351 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 168/345 (48%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG+S+ER+VS +G A AL + G +V +DV DRS + Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 46 LA-----HLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + + PDLA F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL-ISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + + D L + P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W + L++E+YV G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDE-NENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 351 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 163/345 (47%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV GG S+E +S+ +G L G V I + + G V+ Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L D+AF LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ G V P +++ + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189 S+ + I + + L + + +++ + ++ GIE++CGV+ +L Sbjct: 184 SVSVYKITNREQLKEKL--ALIFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514] Length = 304 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ REVSL +G A A AL G +V ++D + A ++ F LHG Sbjct: 12 ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 PP V+KP++ GSS+G+ + + D S L + + + Q+L+E+ + G E T Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKL----AEALRYDTQVLMEERILGRETT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++G+ L + E+ PK+ Y Y+ KY++ + ++ PA + +Q A A +AI Sbjct: 186 VGILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAI 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G R S D + P V LE+N PGMT S+ P+ A AG + EL MV+ Sbjct: 245 GGRDYSXVDVMVRPNGEPVV-LEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVD 299 >gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 295 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 166/298 (55%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E+ Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294 >gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CMR15] Length = 331 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 161/304 (52%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ++DG EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIDGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D VQ L Sbjct: 197 TCAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADAAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 256 AYRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ATAS 319 >gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000] gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum GMI1000] Length = 331 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 161/304 (52%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P P ++ D Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPT-PDFVMLHAGADW 138 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP + GSS+G+ + +P +++ + ++ EQ++DG EL Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIDGDEL 196 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 TC V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP + VQ L Sbjct: 197 TCAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQ 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 256 AYRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315 Query: 294 EDAS 297 AS Sbjct: 316 ATAS 319 >gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 252 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 13/251 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + Sbjct: 5 FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 64 Query: 115 R------FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D+ Sbjct: 65 RAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDE 122 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +LIE+++ G E T ++G+ L I P FY YE KY S + + PA + Sbjct: 123 ILIEKWLCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEA 181 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +Q L A +A+GC G R D + D + + LE N PGMT S+ P A AG SF Sbjct: 182 ALQSLVLQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 240 Query: 286 RELLLWMVEDA 296 +L++ ++E A Sbjct: 241 SQLVVRILELA 251 >gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454] gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica HKI 454] Length = 315 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 151/297 (50%), Gaps = 11/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSER+VSL SG+ L DAG D L AF LHG Sbjct: 14 VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GE+G +Q L+ I YT G+L SAL MDK R+K + G+P P V R + Sbjct: 74 GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133 Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 M +Q +++ P +KP GSS+ + +K ++P L Q++ H +L+E+ +D Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHALAQAA--RHDPVVLVEKSIDG 191 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G L + I VP +FY Y KY + ++ +++P + + + LA Sbjct: 192 GGEYTACIAGSLPLPLIRI-VPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARR 250 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + C R+DF+ D F LE+N PGMT S+ P+ A G S+ ELL+ Sbjct: 251 AFEVLACTAWGRADFMLDSDGNPYF-LEVNTSPGMTDHSLPPKAARAVGISYSELLV 306 >gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] Length = 317 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 12/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER+VSL SG+A A+ L + G + ++D+ ++ V +LA D AF LH Sbjct: 19 VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAA-TFDRAFIALH 77 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NR 115 G GEDG VQA+L+LL IP+T S ASA++MDK+++KQ+ S +P P V + Sbjct: 78 GEGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPT-PDYRVLQSSDD 136 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F Q L +V KP+ GSS+G+ + + + ++ ++ E V G Sbjct: 137 FAACLQALGGSVFV-KPVHEGSSIGMTCANNKEELKAAFEAAEKFD--SEVFAESTVVGR 193 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++G+ L E+ +P + FY Y+ KY S + ++ P + D KE+ LA + Sbjct: 194 EFTVAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSF 252 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + IGC G R D L D + LE+N PGMT S+ P A G +F EL+ Sbjct: 253 KMIGCSGWGRVDALQDE-AGNFHLLEVNTVPGMTDHSLVPMAARAVGLNFSELV 305 >gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] Length = 365 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 53/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S+E E+SL S A L+ F + I +D+ + L+ Sbjct: 11 VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F VLHG GEDG +Q +L+L++I Y + +L SA+ Sbjct: 71 ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLG 140 MDK+ SK++ + +PV P + N ++ + I P IKP+ GGSSLG Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190 Query: 141 IIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA- 193 I IKKD + ++L+ + + ++L+E+ ++ E+ V+ + A V++I Sbjct: 191 ITKIKKDTDLENAIELV----FTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGE 246 Query: 194 -VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P+ +FYSYE KY ++PA + ++++RLA + C G++R DF + Sbjct: 247 IIPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIE 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S+K+++ E+N PG T +S++P + +G ++ LL ++E A Sbjct: 307 KRSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELA 351 >gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 308 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 11/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ P + Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGI-ATPDWMHLVKGEEL 128 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + L+ P V+KP GGSS+G+ ++ ++ + + W+ ++++IEQY+ G E Sbjct: 129 PLQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKWD--NEIIIEQYMIGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ D L V I + F+ Y+ KY ST P ++PL I+ V + A ++ Sbjct: 187 ITCPILNDRLLPVLSIK-HTAVFFDYQAKYDD-ASTIEEPVELPLAIHDRVAKAAMTSYT 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ C +R D L + LE+N PGMT S+ P+ A AG S+ LL Sbjct: 245 SLKCSVYARVDMLIK--EGVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALL 295 >gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] Length = 308 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 35/315 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG SSE+EVS+ S + +L + + V +D+ A L P Sbjct: 5 ILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDI--------ATLSPYELCQKILCEN 56 Query: 52 -DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 DL F VLHG GEDG +Q L+ L I Y SG+ + A++MDK R K + S P P Sbjct: 57 FDLVFPVLHGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQ-PD 115 Query: 111 ILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + R T DS ++ P V+KP GSS+G+ ++ + + D L+ + + Sbjct: 116 FIAIR-TKDSTEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELK-DALE-LGFKYDP 172 Query: 165 QLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +L+E+++ G E+TCGV+G+++ L + EI +PK+ F+ YE KY+ ++PA++ Sbjct: 173 IVLVEEFIHGKEITCGVIGNSNVIALPLVEI-LPKTKFFDYESKYNPQLCDEIVPARLND 231 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ +Q LA A++A C+ R D D ++ EIN PG+T S+F + A Sbjct: 232 NLKDRLQELAIKAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAA 290 Query: 282 GYSFRELLLWMVEDA 296 GYSF+E++ +V+ A Sbjct: 291 GYSFQEIVKLLVKLA 305 >gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 363 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 S G + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +LASA MDK +K+++ G+ V P +++NR F + L S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ A + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNNEAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F +R++ E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] Length = 378 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 145/266 (54%), Gaps = 18/266 (6%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D+ F +LHG +GEDG +Q + E+ + Y G+ +SA+SMDK +K V+++ G+ Sbjct: 110 LGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGI 167 Query: 106 PVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V LV + MD + P +KP + GSS+GI + + +P+ + ++ Sbjct: 168 DVGQWELVTARQWDADSTACMDRIERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEA 227 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYELKYSSLNS 211 + NH ++++E + G E+ CGV+G S + EI VP+ +FY YE KY Sbjct: 228 A--NHDPRIIVEASISGREVECGVLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVV 285 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA + + ++ A+ A A+ C G++R DF D S V E+N PG TP+ Sbjct: 286 GLSCPADVAPEYADRIRETAWRAFDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPI 345 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297 S++P+M A AG S+ +LL ++ +A+ Sbjct: 346 SMYPQMWAAAGLSYPDLLTELLTEAA 371 >gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I] gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50] gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I] gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50] gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS] Length = 316 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 164/308 (53%), Gaps = 18/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P P+ V Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPT-PAFEVLGGSTEL 126 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 R D L P ++KP GS++GI + + ++ ++ ++L EQ++ G Sbjct: 127 RLVPDRLGL---PLILKPPHEGSTVGITKVAGYSDMKAAYELAARFDA--EVLAEQFITG 181 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V+G +L V EI P + Y YE KY S ++ + PA +P D+ +V + Sbjct: 182 RELTVAVLGSGAAARALPVIEIVAPGGN-YDYEHKYFSDDTQYFCPADLPADVAADVAAV 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ A+GC G R DF+ D +R + LE+N PGMT S+ P A G S+ +L + Sbjct: 241 AERAYAALGCEGWGRVDFILDRENRP-WLLEMNTSPGMTGHSLVPMAARAVGMSYADLCV 299 Query: 291 WMVEDASC 298 ++ +A+C Sbjct: 300 AILAEAAC 307 >gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 318 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 24/313 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ER+VSL++G+ ALE G +V +DV+ + L L+P F LHG Sbjct: 4 LAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+LE L IPYT SG L+S MDK +K+ +++ G+P R M+ Sbjct: 64 PGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNE 123 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLI 168 + P V+KP + GSS G+ +++ P +LL + ++ + ++L+ Sbjct: 124 MGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVER----PEELLDAVYEAFGYDAKILL 179 Query: 169 EQYVDGIELTCGVM---GDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 E++V+G E++ ++ G+A +L + EI P+ Y+++ KY+ + +PA++P Sbjct: 180 ERWVEGREVSVPILEPAGEAPRALGLVEIR-PREGAYNFQAKYTPGMTDFAIPAELPPGT 238 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ A ++ +GC G +R D + + + +V L++ PG T S FP A AG Sbjct: 239 ASRLEETALAVYRTLGCSGFARVDTIVEGETPQV--LDVKTIPGFTETSTFPLAAEAAGL 296 Query: 284 SFRELLLWMVEDA 296 SF L+ +++ A Sbjct: 297 SFERLVEIILDSA 309 >gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii] Length = 307 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 155/300 (51%), Gaps = 14/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG SER+VSL + ++ A AL G V ++DV V + +A N++HG Sbjct: 9 IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEVPGDVF--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG +Q+ILE I YT +G+ +S ++ DK+ SK+ + GVP S + +D Sbjct: 67 TFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRS---QTYPLDG 123 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 SQ L I P V+KP + GSS+G+ + + L + + H LIE YV G ELT Sbjct: 124 SQPLAIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGH--DTLIEDYVAGKELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234 GV+GD L + I P FY KY + T + PA + ++ K VQ A A Sbjct: 182 VGVLGDQVLPIIHIE-PVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q+ G R D + + F LE+N PGMT S+ P+ A G F +L ++E Sbjct: 241 FQSCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIE 300 >gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51] gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 52/341 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42 +L GG S E EVSL+S + A++ +++ I + ++ + Sbjct: 8 ILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALEGI 67 Query: 43 GLVLAH--------------LKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++LAH L D L F VLHG FGEDG +Q + E+ IPY SG+ Sbjct: 68 PVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGSGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 L SAL MDK R K V + G+P P I V R + +H + P +KP Sbjct: 128 LGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193 GSS+GI + + + L ++ ++ +L++EQ + G E+ V+G DA + Sbjct: 188 GSSVGISKARNKEELIQALQLAAEYDR--KLVVEQNIVGREIELSVLGNEDAQASIPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF Sbjct: 246 LPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVTEG 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 306 S-QIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345 >gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 377 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 63/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S + +AL AG+ V I + R VL P Sbjct: 17 VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+AF VLHG FGEDG +Q + E+ Sbjct: 77 LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL------ISP 126 IPY SG+ ASA +MDK K + G+P P ++V + + D + + Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP +GGSS+ + + K + D + ++L+E+ +DG E+ GV+ D Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADV--DEAIERAREVDPKVLVERAIDGREIEVGVLDDVH 254 Query: 187 LDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +++VP +FY +E KY + +PA +P + + V R A +A++A+GC Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DF F + +VF E+N PG TP S+FP + G + L+ ++V+ Sbjct: 315 EGLARVDF-FVTATGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQ 367 >gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] Length = 309 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 164/294 (55%), Gaps = 10/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 + V+MGGISSERE+SL +G+ + L+ + ++V + +++ L+ + D+A L Sbjct: 3 IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + GV + ++ Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P ++KP GGSS+GI +++ ++ + + ++ S + +LIE Y G Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEACSLDQA--ILIEPYYKGT 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+TC ++ L + I+ S ++ Y+ KY + + ++P I + V+ A ++ Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEEKV-VELPPVIEQRVREAALASY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + C+ +R D + + + LE+N PGMT S+ P+ AA AG +F +LL Sbjct: 240 RLLQCKVYARVDMIL--CQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLL 291 >gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 359 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 174/340 (51%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 + +L+SAL MDK+ +K++ G+P ++V R + +HL P +V KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFV-KPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + ++ +P L ++ ++ +LLIE+ ++ E+ C V+G+ + + + Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIEKGIEAREIECSVLGNENPEASVAG 242 Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP ++FY Y KY S ++PA +P + +E+++LA A++A+ RG++R DFL Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFL 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 D + V+ E+N PG T +S++P++ +G S+ LL Sbjct: 302 MDRNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALL 341 >gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato Max13] gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40] gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] Length = 363 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 SVG + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +LASA MDK +K+++ G+ V P +++NR F + L S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 V +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F +R++ E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTGAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 152/266 (57%), Gaps = 16/266 (6%) Query: 38 VDRSVGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D G+VL + K D+ F VLHG +GEDG +Q + E+++IPY G++ASA++MDK+ Sbjct: 87 TDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFEMIDIPYVGCGVMASAVAMDKV 146 Query: 95 RSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIK 145 +K+V+ + + P ++ RF +D ++ P +KP GSS+GI K Sbjct: 147 ITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATFEYPVFVKPANMGSSVGISKAK 206 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYE 203 +++ + + ++ ++ ++++IE +V+G E+ C V+G+ + V A +P +FY Y Sbjct: 207 NREALKIAIKEAGKYD--NKIVIEAFVEGREIECAVLGNEAPRVALPAEIIPSHEFYDYH 264 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY S +V+P + ++ +E+Q LA ++ + CRG+SR DF + + +V E+N Sbjct: 265 DKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRGLSRIDFFVENETNRVLVNEVN 324 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289 PG T +S++P+M G + +L+ Sbjct: 325 TMPGFTKISMYPKMWEATGLPYDKLI 350 >gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] Length = 373 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 153/268 (57%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK +K++ S+ Sbjct: 104 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSA 161 Query: 103 CGVPVCPSILV--NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+P+ P ++ +R ++D + L + P +KP +GGSS+G+ + +P + ++ Sbjct: 162 AGLPIGPHAVLRPSRQSLDREELQRLGLPAYVKPARGGSSIGVSRVSSFDELPAAI--AA 219 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYSYELKYSS 208 + H ++++E ++G EL CGV+ D L+ + EI V + FY +E KY Sbjct: 220 ARRHDPKVIVEAAINGRELECGVLEFPDGRLEASTLGEIRVAGVRGREDGFYDFETKYLD 279 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + +PAK+ D+ V++LA A +AI C+G++R DF + EIN PG Sbjct: 280 DAAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVDFFLTDDGPVIN--EINTMPGF 337 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P M A +G + LL MVE A Sbjct: 338 TTISMYPRMWAASGVDYPTLLATMVETA 365 >gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] Length = 326 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VS+ S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRN-D 63 Query: 44 LVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 +H +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q Sbjct: 64 FSFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQY 123 Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + GV V S+LVN+ D I P IKP GSS G+ +K + I L Sbjct: 124 LKGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL- 182 Query: 156 QSSSWNHGDQLLIEQYVDGIELT--CGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNS 211 ++ D ++IE ++DGIEL C D S+ +TE+ V K++F+ Y KY+ Sbjct: 183 -EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYNG-EV 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT Sbjct: 240 TEITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTAT 298 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG +E++ ++ED+ Sbjct: 299 SFIPQQVRAAGIDIKEVMTDIIEDS 323 >gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] Length = 359 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL IPY Sbjct: 66 KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 + +L+SAL MDK+ +K++ G+P ++V R + +HL P +V KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFV-KPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + ++ +P L ++ ++ +LLIE+ ++ E+ C V+G+ + + + Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIEKGIEAREIECSVLGNENPEASVAG 242 Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP ++FY Y KY S ++PA +P + +E+++LA A++A+ RG++R DFL Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFL 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 D + V+ E+N PG T +S++P++ +G S+ LL Sbjct: 302 MDRNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALL 341 >gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] Length = 301 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--RDNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] Length = 343 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 166/336 (49%), Gaps = 48/336 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV------------------SQIDVDRSVGL 44 VL GG S+EREVS++SG+ AL + K ++ DVD++ Sbjct: 5 VLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAADA 64 Query: 45 ----------------------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 VL K D+ F LHG GEDG VQ++L+L+ I YT Sbjct: 65 MREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKYTG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSS 138 SG L+S ++MDK +K V + GVP I + + SQ + + P ++KP GGSS Sbjct: 125 SGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + LL++ S+ + ++++EQ++ G E + V+ + V EIA P Sbjct: 185 VGVCIANNQTEYQAALLEAFSYEN--EVVVEQFITGREFSVAVVDGKAYPVIEIA-PLQG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY + + PA + + KE+Q+ A + ++A+ + +R DFL D ++ Sbjct: 242 FYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDD-EGNMY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 LE N PGMTP S+ P+ A G + +L ++E Sbjct: 301 CLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336 >gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 301 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 2250] gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 363 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +R + E+N PG T +S++P++ +G ++ EL+ Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340 >gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822] gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis] Length = 316 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 163/308 (52%), Gaps = 18/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P P+ V Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPT-PAFEVLGGSTEL 126 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 R D L P ++KP GS++GI + + ++ ++ ++L EQ++ G Sbjct: 127 RLVPDRLGL---PLILKPPHEGSTVGITKVAGYSDMKAAYELAARFDA--EVLAEQFITG 181 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V+G +L V EI P + Y YE KY S ++ + PA +P D+ +V + Sbjct: 182 RELTVAVLGSGAAARALPVIEIVAPGGN-YDYEHKYFSDDTQYFCPADLPADVAADVAAV 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ A+GC G R DF+ D +R + LE+N PGMT S+ P A G S+ +L + Sbjct: 241 AERAYAALGCEGWGRVDFILDRENRP-WLLEMNTSPGMTGHSLVPMAARAVGMSYADLCV 299 Query: 291 WMVEDASC 298 ++ A+C Sbjct: 300 AILAKAAC 307 >gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 304 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P++I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ ELL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 363 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +R + E+N PG T +S++P++ +G ++ EL+ Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340 >gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] Length = 351 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 104/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV GG S+E +S+ +G L G V I + + G V+ Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L D+ F LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ G V P +++ + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189 S+ + I + + L + + +++ + ++ GIE++CGV+ +L Sbjct: 184 SVSVYKITNREQLKEKL--ALIFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 23/304 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVS+ SG AL G D +RS+G + A + D F LH Sbjct: 13 VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAE-QFDRVFIALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT 117 G +GEDG +Q LE + +PYT G+++S+++MDK+ +K++ S G+P P L + T Sbjct: 72 GRYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPT-PRFLTLDAQAT 130 Query: 118 MDSQHLISP-----PYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P P ++K GS++GI + D DL + +L E+ Sbjct: 131 TREQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCA----RYDKVVLAEE 186 Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G ELT V+G S L V EI P+ + Y Y+ KY + ++ ++ PA + ++ + Sbjct: 187 FIRGRELTVPVLGTGSAARALPVIEIRAPEGN-YDYQNKYFTDDTKYLCPAPLDEELTRH 245 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYS 284 +Q LA A A+GCRG SR DF+ + K + LEIN PGMT S+ P A G S Sbjct: 246 LQNLAVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMS 305 Query: 285 FREL 288 + +L Sbjct: 306 YEDL 309 >gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] Length = 320 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 143/263 (54%), Gaps = 22/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG +GEDG +Q + EL ++PY + AS+ MDK+ +K+V S G+P S+ Sbjct: 55 DVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSV 114 Query: 112 LVNRFT----------MDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 V + M+ + P IK + GSS+G K++ + Sbjct: 115 YVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAK 174 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNS 211 L +++ ++ +++E+ VD IEL V+G+ + V+ + +P +FY++E KY S Sbjct: 175 LEEAAKYDT--HIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAES 232 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 +PAK+ +I +++++ A A +AI G+SR DF D + V+ EIN PG T + Sbjct: 233 KTCIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSI 292 Query: 272 SIFPEMAAYAGYSFRELLLWMVE 294 S++P++ GYS+ ELL ++E Sbjct: 293 SMYPQLMEDYGYSYSELLDKLIE 315 >gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2] gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 52/341 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42 +L GG S E EVSL+S + A++ +++ I + ++ + Sbjct: 8 ILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALEGI 67 Query: 43 GLVLAH--------------LKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++LAH L D L F VLHG FGEDG +Q + E+ IPY SG+ Sbjct: 68 PVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGSGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 L SAL MDK R K V + G+P P I V R + +H + P +KP Sbjct: 128 LGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193 GSS+GI + + + L ++ ++ +L++EQ + G E+ V+G DA + Sbjct: 188 GSSVGISKARNREELIQALQLAAEYDR--KLVVEQNIVGREIELSVLGNEDAQASIPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF F Sbjct: 246 LPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDF-FVTE 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 305 GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345 >gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 14/287 (4%) Query: 14 VSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72 +SL SG+A AL +G + D DRSV ++ + D AF VLHG GEDG +Q +L Sbjct: 1 MSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLHGRGGEDGQIQGVL 57 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYV 129 E L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T D +I+ P + Sbjct: 58 EWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-DLDSVIAELGLPVI 116 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T + L V Sbjct: 117 IKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPV 174 Query: 190 TEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + P FY YE KY + + +P + K++Q L A QA+G G R D Sbjct: 175 IRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDA 234 Query: 249 LFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + D + FW LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 235 MQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 279 >gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18] gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18] gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190] gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399] gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902] Length = 304 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 241 AQAIGAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] Length = 306 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 8/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSEREVSLSSG A AL +G +D D L AF VLH Sbjct: 8 VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG VQAIL+ IPYT SG+LA AL+MDK+ +K+V + G+PV P ++++ T Sbjct: 68 GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127 Query: 120 SQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ L + IKP GSS+G+ + + ++ ++++ E +V G E Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAGGIR--EKIMAEPWVTGRE 185 Query: 177 LTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT V+G L E+ A + FY Y+ KY + ++ + P I + +++ L A Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AIG +G +R DF+ D +R + LEIN+ PGMT S+ P A G F L+ Sbjct: 246 DAIGAKGWARVDFILDGDNRP-WILEINMVPGMTSHSLVPLAAREDGMDFVALV 298 >gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 301 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 363 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +R + E+N PG T +S++P++ +G ++ EL+ Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340 >gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str. 301020] Length = 363 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +R + E+N PG T +S++P++ +G ++ EL+ Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340 >gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum] Length = 303 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 10/297 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + R T D + Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPD-K 119 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P+++KP GSS+G+ + +P LL++ H ++L+E ++ G E+ + Sbjct: 120 IPFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAE--KHSSRILVEPFLPGREVQSAI 177 Query: 182 MGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + L EI VP S FY+Y KY S H+ PA + D+ ++ A + Sbjct: 178 LDGRYLGAIEI-VPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLE 236 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG++R D L P R V LE+N PG+T S+ PE+A G SF +L+ ++ A Sbjct: 237 LRGVARMDTLVLPDGR-VVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS] gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS] gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS] gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS] Length = 371 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 22/299 (7%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 EVS SG A A D G + + + + G VLA + D+ F VLHG +GEDG +Q + Sbjct: 72 EVSAESGTALALP-ADPGRRGELVSLSPAAAGEVLAAV--DVVFPVLHGPYGEDGTIQGL 128 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP 127 LEL +PY +G+LASA MDK +K+++ + G+PV +++ T+D + + P Sbjct: 129 LELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLP 188 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DA 185 +KP +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ D Sbjct: 189 VFVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDG 246 Query: 186 SLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 +D + EI V + FY + KY + +PAK+ D+ E++RLA A +A Sbjct: 247 RVDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRA 306 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 I C+G++R DF V EIN PG T +S++P M A +G + LL MV+ A Sbjct: 307 IDCQGLARVDFFLTDDGPVVN--EINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTA 363 >gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 309 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 164/303 (54%), Gaps = 17/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+ER+VSL++G+ L ++V I + + V L L D + L Sbjct: 7 VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 HG FGEDG +QAILE L I Y G+++S++ MDK +K++V++ GV V + V R Sbjct: 67 HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQY 171 F S+ L ++KP GGSS+G+ ++ ++ + L L+ + + L+E+ Sbjct: 127 ADFKTISEKL-GKRIIVKPNSGGSSIGVSFVESEEQLQEALKLV----FTMDKEALVEEV 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E++ V+ +I D++ Y+ KYS + + + +I +E+ + A Sbjct: 182 LSGTEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFA 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + ++ A+ C G SR DF+ + K +++E+N PGMT S+ P+ A GYS+ E L Sbjct: 241 YDSYYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDL 298 Query: 292 MVE 294 ++E Sbjct: 299 LIE 301 >gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] Length = 314 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 154/302 (50%), Gaps = 30/302 (9%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--HLKPDLAFNVLHG 60 V GG S ER VSL SGKA A AL AG +V D+ +G+V A DL F LHG Sbjct: 5 VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 +GEDG +QA+LE IPYT SG + +MDK ++ V G+PV P + R Sbjct: 65 GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124 Query: 116 ------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLL 167 + HL +KP GS++G+ ++ + P DL ++ + + D+L+ Sbjct: 125 PDLESLMAREGGHL-----ALKPCCCGSTVGVSLVHR----PEDLREARDLALKYDDRLV 175 Query: 168 IEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 E+++ G ELT V + +L EI P FY Y KY+S + ++ PA + + Sbjct: 176 AERFIPGRELTVAVFEEGGRPRALPAIEIR-PHEGFYDYRNKYTSGATEYLCPAPLEEAL 234 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 V LA AH+A+GCR SR DF + F LE+N PGMT S+ P+ A G+ Sbjct: 235 AARVGSLAEAAHRALGCRVYSRVDFRLSEEG-EPFLLEVNTAPGMTGTSLVPKAGAAVGW 293 Query: 284 SF 285 SF Sbjct: 294 SF 295 >gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] Length = 322 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 24/311 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + VL+GG S+EREVSL SG +AL G D +RS+ LA + D F LH Sbjct: 11 VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLA-ELATEQFDRVFIALH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q LELL IPYT SG++ASA+ +DK+ +K++ S +P P LV +D Sbjct: 70 GRFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPT-PRFLV----LD 124 Query: 120 SQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +Q + P ++K GS++GI + D + + ++ +L E Sbjct: 125 AQTPADVLDEVPEELGLPLMLKAPHEGSTIGIAKVIVDADMHTGFALCAQYD--SVVLAE 182 Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +++ G E+T V+G +L + EI P+ + Y YE KY S ++ ++ PA + ++ Sbjct: 183 EFISGREITIPVLGSGHGARALPIVEIRAPEGN-YDYEHKYFSDDTVYLCPAPLADEVTA 241 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +Q +A A A+GC G R D + F LE+N PGMT S+ P A AG S+ Sbjct: 242 TLQDIAVRAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISY 301 Query: 286 RELLLWMVEDA 296 +L + ++ A Sbjct: 302 EDLCVEILSTA 312 >gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 318 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 157/310 (50%), Gaps = 18/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ + L AG V D D S+ + PD F LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++++LELL +PY +G A ++ DK +K VV S G+ S+ + + T Sbjct: 69 GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG +++ + +P ++ + +GD LIE+ + Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAMV--GCFAYGDTALIERCI 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G+E+ V+ G +L EI VP Y Y +Y++ ++ PA++ + Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEI-VPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G R ISR+D + D F LE+NV PGMT S+ P AG L Sbjct: 246 EMAVTAHTALGLRDISRTDLIVDGDGLPHF-LEVNVAPGMTETSLLPMAVEAAGDDLGTL 304 Query: 289 LLWMVEDASC 298 ++E A+ Sbjct: 305 CRVLLEQAAA 314 >gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568] Length = 304 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVLMGG SSERE+SL SG A +AL+ G D + L+ LK AFN+ Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116 LHG +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + Sbjct: 64 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123 Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P +KP + V+K L + + +++ E+++ G Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234 E +C V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QAIG R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ Sbjct: 241 AQAIGAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299 Query: 295 DA 296 A Sbjct: 300 TA 301 >gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] Length = 371 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 104/355 (29%), Positives = 169/355 (47%), Gaps = 63/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 + VL GG S E EVSL S +A L+ + V+ I + + + LA P Sbjct: 7 VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG GEDG VQ Sbjct: 67 AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121 +LEL+EIPY G++ASA+ MDK +K S G+PV P +L+ R + + Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 ++ P +KP GSS+GI + ++ + ++++++ ++++EQ + E+ + Sbjct: 187 QRLTYPMFVKPANLGSSVGISKVTGRAALARGIAEAAAYDR--RIVVEQGIPAREIEVSI 244 Query: 182 MGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + V VP ++Y YE KY S S ++PA I L++ V+RLA A +AI Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DFL + + ++ EIN PG TPVS++ M +G + +LL ++E Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIE 359 >gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 300 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 162/300 (54%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGGISSERE+SL SG+A +A++ + ++ I +D ++ D AF LHG Sbjct: 3 VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ++L+ L IPY+ G + SA+ MDK +K+V+ S G+ V R D Sbjct: 63 QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTV-RAIQDI 121 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P+ +KP GGSS+ + K + + ++++ ++ +++IE+YV G E Sbjct: 122 DYALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAVVEALKYDT--EVMIEEYVKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ + + I P +F+ + KY N + ++ ++ K V+ +A Sbjct: 180 ITCSIINRKTYPIVAIK-PTGEFFDFTSKYQD-NGAEEIVVQLEENLSKTVEAMAIACWD 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ R D + + + LE+N PGMT S+ P+ A AG S+ +L+ ++E++ Sbjct: 238 ALKFSAYVRVDMIIK--NNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295 >gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] Length = 316 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 157/299 (52%), Gaps = 18/299 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G VQ +LE+L++P+ + + DK +K V G I++ T Sbjct: 66 GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q ++ P ++KP +GGS+LG V+++ +P ++ + +GD +L E+ Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +VDG+E+ V+ G +L EI VP+S Y Y +Y++ + PA+I + K Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARISDEAAKA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V LA AH+ +G R ISR+D + P V +LE+N+ PG+T S P AG + Sbjct: 243 VSELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTL 300 >gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 341 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 163/341 (47%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41 + VL GG S+ER+VS+ SG AL G + DV+R Sbjct: 3 IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62 Query: 42 V-----------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 G++ D F LHG GEDG +QA +LL I Sbjct: 63 AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133 YT SG L SAL+MDK +KQ+ GVP ++V + DS + P V+K Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRK--TDSPKSAAELGMELPCVVKTA 180 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G+ ++ ++ + + +++ D+L++EQY+ G E T GV+ + + EI+ Sbjct: 181 CGGSSVGVYIVHTEEEFSEAV--KNGFSYEDKLIVEQYIRGQEYTVGVIDGKAYPIVEIS 238 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P + FY Y+ KY + ++ PA + ++ +++Q +A A+ + +R DF+ D Sbjct: 239 -PIAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE- 296 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G +F +L ++E Sbjct: 297 DGGIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337 >gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] Length = 362 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 180/337 (53%), Gaps = 57/337 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-------------FKVSQ-------------- 35 +L GG S+E +VS++S + AL+D+ +KV + Sbjct: 8 LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67 Query: 36 -------IDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + VD RSV L+ + D+ F +LHG +GEDG VQ LEL+ +PY SG+L Sbjct: 68 DSDVRDIVPVDSQPRSVPEALSAV--DVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGG 136 S+LSMDK+ K++ S G+P+ IL + + D + +IS P +KP G Sbjct: 126 GSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI 192 SS+G I KD+S L L+ +S + +L++EQ V+ EL C V+G+ AS+ V EI Sbjct: 186 SSIG-ITKAKDRSSLLQALELAS-KYDRRLIVEQGVEARELECAVLGNDYPRASV-VGEI 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P +FY++E KY S +S ++PA IP + E++ A A +A+ G++R DF Sbjct: 243 -LPGDEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLTS 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV EIN PG TP+S++P++ +G S+ +L+ Sbjct: 302 -ENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLV 337 >gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 305 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 15/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER+VS+ SG + +LE G +V D+ R L LK DL F LHG Sbjct: 5 IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFTMD 119 FGEDG VQ ++EL +PYT S SA+ DK + ++V + +P+ ++ + D Sbjct: 65 KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLWKKVISEK---D 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKP + GSS+G+ + D + L + D LL+E+Y+DG E+T Sbjct: 122 LEGWKIFPCVIKPTREGSSIGVFIC--DDASTLINRTRLLLDVYDSLLLEEYIDGREITV 179 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ G L V EI PK FY YE KY+ + V+PA I + + + + Sbjct: 180 SIIDSREGIKVLPVLEIK-PKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCR +R D + L VF+ LE+N PGMT +S P A AG +F +++L ++E Sbjct: 239 KLLGCRDFARVDGI---LKGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIE 295 Query: 295 DA 296 A Sbjct: 296 AA 297 >gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS] gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS] Length = 371 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 22/299 (7%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 EVS SG A A D G + + + + G VLA + D+ F VLHG +GEDG +Q + Sbjct: 72 EVSAESGTALALP-ADPGRRGELVSLSPAPAGEVLAAV--DVVFPVLHGPYGEDGTIQGL 128 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP 127 LEL +PY +G+LASA MDK +K+++ + G+PV +++ T+D + + P Sbjct: 129 LELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLP 188 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DA 185 +KP +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ D Sbjct: 189 VFVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDG 246 Query: 186 SLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 +D + EI V + FY + KY + +PAK+ D+ E++RLA A +A Sbjct: 247 RVDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRA 306 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 I C+G++R DF V EIN PG T +S++P M A +G + LL MV+ A Sbjct: 307 IDCQGLARVDFFLTDDGPVVN--EINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTA 363 >gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243] gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344] gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b] gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1] gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247] gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98] gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14] gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91] gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9] gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210] gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894] gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112] gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215] gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243] gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344] gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b] gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1] gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229] gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247] gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] Length = 312 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG+ L DAG D + LA LK + AFN Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +Q +++ P +KP GSS+ + +K + L + H +++E+ Sbjct: 129 DYAARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + D L + I VP +FY Y KY + ++ +++P + E +R+ Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G + EL++ Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304 >gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 317 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 171/308 (55%), Gaps = 19/308 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL A +V+ DVD + LA +PD+ + +LHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG ++ +L+LL++PY +G AS ++ K +K VV+ G+ + + + + Sbjct: 69 GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +Q ++S P V+KP +GGS+LG+ +++ +P ++ S + +G+ LIE+ V Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAMV--SCFAYGEVALIERAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG+EL V+ G ++L EI Y Y+ +Y+ + + PA++P + V Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVTEGP--YDYDARYNPGRTEYFSPARLPSSHAEAVA 244 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+A+G R ISR+D + + +LE+NV PGMT S+ P+ A G+S L Sbjct: 245 ATAIAAHEALGLRHISRTDLILQ-ADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTL 303 Query: 289 LLWMVEDA 296 +V+ A Sbjct: 304 YRSVVDHA 311 >gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 363 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +LASA MDK +K+++ G+ V P +++NR F + L S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V Sbjct: 184 ANQGSSVGVSKVSDEADFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F +R++ E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] Length = 304 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ ELL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] Length = 351 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 172/348 (49%), Gaps = 61/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGL 44 + VL GG+S+ER+VSL+SG L + G + +DV D+ + GL Sbjct: 3 IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62 Query: 45 VLAH----LKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 +A +PDLA F LHG+ GE+G +QA Sbjct: 63 EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISP 126 ++L I YT L SAL+MDK +KQ+ + GV P+ L T D + ++ Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGV---PTPLGTNLTKDRKDTALSDLGLTL 179 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P V+KP GGSS+G+ ++ D +S+ + D+++IE Y+ G E G++ + Sbjct: 180 PVVVKPCSGGSSIGVYIV--DTMDAYKEAVENSFRYEDEIVIEPYIKGREFAVGIIDGKA 237 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 L V EI +PK+ F+ Y KY + + PA I ++ + +QR A LA +A+ SR+ Sbjct: 238 LPVIEI-IPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRA 296 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL D + ++ LE+N PGMT S+ P+ A AG ++ +L +++ Sbjct: 297 DFLLDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQ 343 >gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 329 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG++ EREVSLSSG A L AG + D D + LA D F LHG Sbjct: 21 VLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGAT 80 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG ++A+L+L +PY S + L+ DK +K VV S GV + + T Sbjct: 81 GEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFRELG 140 Query: 123 L----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP GGS+LG+ + + + +P ++ S + +GD +++E++V Sbjct: 141 AGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAMV--SCFAYGDTVMVERFV 198 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG+EL V+ G +L EIA P+S + Y +Y+ + + PA++ ++ + Sbjct: 199 DGVELALSVVDLGEGPQALPAVEIA-PESGVFDYTSRYTPGLTEYHAPARVSDEVAGKAA 257 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA H+A+G +SR+D + P +V +LE+NV PG+T S+FP +G S ++ Sbjct: 258 ELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGDV 316 Query: 289 L 289 L Sbjct: 317 L 317 >gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] Length = 324 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 31/313 (9%) Query: 3 VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDRSVGLVLA----H 48 ++ GG S E EVSLSS + +A+ +D + + Q R++ A H Sbjct: 8 LIAGGRSGEHEVSLSSARGVLAAMPHPTDLAVIAKDGKWLLGQA-AQRALHTGSAEEGEH 66 Query: 49 LKPD--------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P +AF +LHG GEDG +Q E+L +PY +G+ ASAL MDK K+V+ Sbjct: 67 AFPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKRVL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + G+PV P + R PY +KP GSS+G+ +K DQ L ++ W Sbjct: 127 AQAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAFRW 186 Query: 161 NHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + +++IEQ ++G+ EL ++G+ + + EI+ +S+FY Y+ KY+ + +P Sbjct: 187 DR--KVVIEQGLEGVRELEIALLGNIYAEPSVIGEISY-QSEFYDYQTKYTEGLAHMRIP 243 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+IP ++ K ++ LA A++ +G RG++R DF F ++ E+N PG TP S++P+ Sbjct: 244 ARIPAELEKRIRELAVAAYRVLGVRGMARVDF-FLSQDGTLYLNELNTIPGFTPTSMYPK 302 Query: 277 MAAYAGYSFRELL 289 + +G + ELL Sbjct: 303 LWQASGMRYPELL 315 >gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 328 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 13/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A L +AG +D L F LHG Sbjct: 27 IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q L L++PYT S +SALSMDK+++K S G+P+ P + + +F Sbjct: 87 RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S ++ P ++KP GSSLG+ + +P L ++ + +++LIE++ Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ +L I P FY Y+ KY S + + P+ + +++ LA Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+QA+GC G R D + D + LE+N PGMT S+ P A G +F +L++ Sbjct: 264 KQAYQALGCSGWGRVDVMQDS-DANFYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVV 321 >gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 359 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ I + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 --------------------------LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 P D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 + +L+SAL MDK+ +K++ G+P ++V R ++ +HL P +V KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFV-KPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + ++ +P L ++ ++ +LLIE+ +D E+ C V+G+ + + Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPQASIAG 242 Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFL 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 D + ++ E+N PG T +S++P++ +G + LL Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILL 341 >gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC 13177] gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] Length = 312 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG+ L DAG D + LA LK + AFN Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +Q +++ P +KP GSS+ + +K + L + H +++E+ Sbjct: 129 DYAARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + D L + I VP +FY Y KY + ++ +++P + E +R+ Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G + EL++ Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304 >gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] Length = 359 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/340 (31%), Positives = 179/340 (52%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR------- 40 +AVL GG S E EVSL S K+ + L+ +++ I DV++ Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65 Query: 41 ------SVGLVLAH------------LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 ++G + P D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 + +L+SAL MDK+ +K++ G+P ++V R ++ +HL P +V KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFV-KPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + ++ +P L ++ ++ +LLIE+ +D E+ C V+G+ + + Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPQASIAG 242 Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFL 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 D + ++ E+N PG T +S++P++ +G + LL Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILL 341 >gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] Length = 353 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 170/332 (51%), Gaps = 41/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRS-----VGLVLAHLKP--- 51 +AVL GG S E EVSL S + L D G ++V + + R G+ +A L Sbjct: 6 IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F VLHG +GEDG VQ +LEL IPY +G+ SA+ MDK+ Sbjct: 66 GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125 Query: 95 RSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIK 145 K + + G+PV P + V + + + L+ P +KP GSS+GI K Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGIS--K 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202 S L+ + + + ++L+E+ + G E+ C V+G+ + + EI +P +DFY Y Sbjct: 184 AYDSAQLEKAINEALQYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEI-IPCNDFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY NS +PAK+ + K+V+ +A A+ C G+ R DF D + +++ +EI Sbjct: 243 SAKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEI 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T +S++P++ +G SF ELL +V+ Sbjct: 303 NTLPGFTSISMYPKLWEASGISFNELLQKLVK 334 >gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9] gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9] Length = 308 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 151/302 (50%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ERE+SL SG+ +AL G D L D F LHG Sbjct: 12 VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LE + IPYT G++ASA+ MDK RSK V + G+PV P R D Sbjct: 72 AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPV-PDF---RLLADD 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSSLG+ ++K + ++ ++ +L EQ+V G Sbjct: 128 SDFAAIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKFD--PLVLAEQFVGG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L +I P ++FY Y+ KY ++ + PA + + ++RLA Sbjct: 186 GEYTVALLEGRALPAIKIE-PATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQG 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G R DFL D + + LEIN PGMT S+ P A AG ++ L L ++E Sbjct: 245 FAVLGGSGWGRIDFLVDEAGQP-YLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLE 303 Query: 295 DA 296 A Sbjct: 304 AA 305 >gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 249 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 13/244 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +N Sbjct: 2 FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61 Query: 115 R---FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R T+ + L + P ++KP + GSS+G+ + K + L++ ++ H Sbjct: 62 RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVE--AFRHDSD 119 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +LIE+++ G E T ++GD L I P FY YE KY S + + P+ + ++ + Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAPGV-FYDYEAKYLSDKTQYFCPSGLSSELEQ 178 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ LA A+QA+ C G R D + D + LE+N PGMT S+ P A +G SF Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237 Query: 286 RELL 289 +L+ Sbjct: 238 SQLV 241 >gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 301 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 321 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 158/308 (51%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A AL AG + S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S ++ L+ DK +K + S G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ ++ +++P ++ ++ +GD LIEQ V Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAMVD--AYTYGDVALIEQLV 188 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ G++ G +L TEI VP S Y YE +Y++ + PA+I D Sbjct: 189 EGTEVAIGILDTGDGPEALPATEI-VPTSGVYGYEARYNAGLTRFFTPARISPDANAAAS 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+A+G +SR D + D F +E+NV PG+T S+ P+ A AG +L Sbjct: 248 AAAIGIHRALGIGQMSRVDIIIDAAGEPWF-IEVNVIPGLTETSLLPQGLAAAGVEVGDL 306 Query: 289 LLWMVEDA 296 + E A Sbjct: 307 YRRLAEAA 314 >gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 378 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 144/266 (54%), Gaps = 18/266 (6%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D+ F +LHG +GEDG +Q + E+ + Y G+ +SA+SMDK +K V+++ G+ Sbjct: 110 LGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGI 167 Query: 106 PVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V LV +S + P +KP + GSS+GI + + +P + ++ Sbjct: 168 DVGRWELVTARQWESDPGACVERIERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEA 227 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNS 211 + NH ++++E V G E+ CGV+G + + EI VP+ +FY Y+ KY Sbjct: 228 A--NHDPRVIVEASVSGREIECGVLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVV 285 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA++ + ++ A+ A A+ C G++R DF D + V E+N PG TP+ Sbjct: 286 GLSCPAEVSAAYAQRIRETAWRAFDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPI 345 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297 S++P+M A AG ++ +LL ++ +AS Sbjct: 346 SMYPQMWAAAGLNYSDLLSELLTEAS 371 >gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 309 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S ER +SL SG ++L +G ID L H K AF LHG Sbjct: 8 IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++L+ L IP+T S L SA+S++K ++K + S +PV P + +N+ + Sbjct: 68 RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127 Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L+ P ++KP + GSS+GI ++ ++ L +++ + +LIE++ Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYET--LYKACKTAFIFDNSILIEKF 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G L + I P++ FY+Y KY S +T+ P+ + E++++ Sbjct: 186 IYGEEYTISILGKKILPIIRIC-PENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A I G R D + D + FW LE N PGMT S+FP A AG S++ L+ Sbjct: 245 LTAWNIIDGTGWGRVDVIMD--YKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQ 302 Query: 291 WMVEDAS 297 ++E A+ Sbjct: 303 KILELAN 309 >gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T] gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T] Length = 304 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 159/303 (52%), Gaps = 16/303 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG D VL + AF LHG Sbjct: 8 VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LEL+ IPYT SG++ASALSMDK R+K V S G+P P + D Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPT-PRYAILEHDSDW 126 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLI-EQYVD 173 +++ P +KP+ GSS+G + + + ++W D+L+I E+++ Sbjct: 127 DAVVAELGLPIFVKPVHEGSSMGATKVVEAGQL------RAAWELAARYDRLVIAEEFIC 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT + D +L + I P + Y Y+ KY + ++ + P+ +P E+Q + Sbjct: 181 GAELTAPFLEDRALPLVRIVAPGGN-YDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMK 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GCRG R+D + R + LE+N PGMT S+ P A AG F L L ++ Sbjct: 240 CARVLGCRGWGRADLILTEDGRP-YLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEIL 298 Query: 294 EDA 296 + A Sbjct: 299 QGA 301 >gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] Length = 346 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 155/339 (45%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL G S+ER VS+ SG AL G + +DV D V + Sbjct: 3 IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62 Query: 46 LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 A+++ D+ F LHG+ GEDG VQA +L+ I Sbjct: 63 AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKG 135 YT + ++SA+SMDK R+KQV + GV V R + + P +IKP G Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ + ++ + L + S +IE+++ G E TC V+ + + EI P Sbjct: 183 GSSVGVTICHTEKDVEAGLALAFSLEQ--SAVIEEFIQGREFTCAVIDGKAYPIVEIH-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K +Y + KY + + PA+I + E+Q LA A+G + R DFL Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ LE+N PGMTP S+ P+ AA G + L M+E Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338 >gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 163/339 (48%), Gaps = 55/339 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41 + VL GG+S+ER+VS SG A AL G +V +DV DR+ Sbjct: 20 IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79 Query: 42 ------------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72 + + A K D+ F LHG GE+G VQA Sbjct: 80 VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129 +L I YT + L A++MDK +K ++ G+P I + R + I P V Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D+++IE+Y+ G E + GVM D L V Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY ++ KY++ ++ PA +P + + +Q+ A +A+G SR DFL Sbjct: 258 IEIA-PIRGFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 D S ++F LE N PGMTP S+ P+ A G S+ +L Sbjct: 317 LDE-SGRIFCLEANTLPGMTPTSLLPQEEAVLGMSYDDL 354 >gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis] Length = 352 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/334 (30%), Positives = 172/334 (51%), Gaps = 49/334 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DR-- 40 +A++ GG+SSE EVSL S A +E + V +I + DR Sbjct: 4 VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63 Query: 41 -------------SVGLVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 VL + +KPD+ F VLHG +GE+G +Q + ELL+IPY G Sbjct: 64 LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGS 137 I A+A+SM+K+ Q + GV PS+++ + D Q + + P IKP + GS Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEK-GQDLQKVDAFAKIHGFPLYIKPNEAGS 182 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPK 196 S GI +++ + + ++S ++ ++LI++ V G+E+ CG++G+ L V E + Sbjct: 183 SKGISKVERKSDLYKAIDEASKYD--SRILIQKEVKGVEIGCGILGNEQLVVGECDQISL 240 Query: 197 SD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 D F+ YE KY+ + + +LPAK+ +D +++Q A ++ +GC+G++R DF Sbjct: 241 VDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLTD-DG 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ EIN PG T S FP M G ++E++ Sbjct: 300 EILLNEINTMPGFTEHSRFPMMMNEIGMDYKEII 333 >gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] Length = 426 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 14/259 (5%) Query: 48 HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 L+P D+ F VLHG FGEDG VQ +LEL IPY +G++ASA+ MDK K++ + G+P Sbjct: 150 RLEPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLP 209 Query: 107 VCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V P ++V R+ + ++ P KP GSS+GI ++ L ++ Sbjct: 210 VVPFLVVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEA 269 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 +++ ++++E+ VD EL V+G D V P+ FY+Y KY+ S ++ Sbjct: 270 FAYDR--KVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIV 327 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA +P + +E+QRLA A QAI G++R DF + + ++ EIN PG T +S++P Sbjct: 328 PAPLPPRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYP 387 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ AG +R+L+ ++E Sbjct: 388 KLWEAAGLPYRDLITRLIE 406 >gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 301 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 164/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V +V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 301 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] Length = 326 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/326 (30%), Positives = 168/326 (51%), Gaps = 39/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF---------KVSQIDVDRSV--------- 42 ++++ GG SSE VSL S + S ++ + + KV ++ +D V Sbjct: 6 VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65 Query: 43 -----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 G V+ D A+ +HG GEDGL+Q ELL IPY+ G+LASAL+ DK Sbjct: 66 SFEWNGEVITF---DFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCN 122 Query: 98 QVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 Q + G+ V S+++ + +D I P IKP GGSS G+ + K++ I Sbjct: 123 QYLKGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPA 182 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209 +L+ +++ ++LIE ++DG E+TCG ++ +TE+ V ++F+ Y+ KY+ Sbjct: 183 ILK--AFHESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEV-VTHNEFFDYDAKYNG- 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + PA++ ++ K VQ L + IGC GI R DF+ + + LE+N PGMT Sbjct: 239 QVEEITPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITD-KKVINLLEVNTTPGMT 297 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 P S P+ AG ++++ ++E+ Sbjct: 298 PTSFIPQQVRAAGLEIQDVMTDIIEN 323 >gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile 630] gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile] Length = 366 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159 V SIL+ ++F + + ++ P IKP++ GSS GI I K++ + +DL + Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + H ++++IE+ +DG E+ C V+G+ L V EI + K F+ Y KY+ +S +P Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I LD K +Q A + ++ +GC G +R D P S ++ + E+N PG T S +P Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344 Query: 277 MAAYAGYSFRELLLWMVE 294 M G SF E+L ++E Sbjct: 345 MMKGIGLSFEEILDKIIE 362 >gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii] Length = 306 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG +EREVS + ++ +AL+ G +V ++DV +V + +A N++HG Sbjct: 9 IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVHGPDFVVPEGVF--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QAILE IPYT +G+ +S ++ DK SK+ + GVP S + +D Sbjct: 67 TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRS---QNYKLDG 123 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 I+ P V KP + GSS+G+ + + + + + +G L+E+++DG ELT Sbjct: 124 SEPLSITIPLVSKPPREGSSVGVNICRTGEEWAKGI--EEALKYGTTTLVEEFIDGKELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234 GV+GD L + I P FY KY + T + PA++ K VQ A A Sbjct: 182 VGVLGDQVLPIIHIE-PVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q+ G R D + + F LEIN PGMT S+ P+ AA G F +L + ++E Sbjct: 241 FQSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIE 299 >gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH] gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4] gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264] Length = 312 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 157/300 (52%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+ER+VSL+SG+ L DAG D + LA LK + AFN Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ +++ P +KP GSS+ + +K + L + H +++E+ Sbjct: 129 DYAARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + D L + +I VP +FY Y KY + ++ +++P + E +R+ Sbjct: 187 IEGGGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G S+ EL++ Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304 >gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] Length = 378 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 147/272 (54%), Gaps = 19/272 (6%) Query: 40 RSVGLV-LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 R VG+ L H+ D+ F +LHG +GEDG +Q + E+ + Y G+ +SA+SMDK +K Sbjct: 103 RVVGVEDLGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKT 160 Query: 99 VVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 V+++ G+ V LV MD + P +KP + GSS+GI + + + Sbjct: 161 VLAAAGIDVGRWELVTARQWDTDATACMDRIEGLGFPVFVKPCRAGSSVGISRVTCREDL 220 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYEL 204 P+ + +++ NH ++++E G E+ CGV+G S + EI +P+ +FY YE Sbjct: 221 PVAIKEAA--NHDPRIIVEASTSGREVECGVLGSRSDWRSGTAPLGEIVIPEGEFYDYEH 278 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY PA + + ++ A+ A A+ C G++R DF FD + V E+N Sbjct: 279 KYVDDIVGLSCPADVAPEYADRIRATAWRAFDALECEGLARVDFFFDEATDSVIINEVNT 338 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP+S++P+M A +G S+ +LL ++ +A Sbjct: 339 MPGFTPISMYPQMWAASGLSYSDLLNELLTEA 370 >gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405] gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405] Length = 368 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 154/303 (50%), Gaps = 21/303 (6%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66 ERE + + KA +D +V+ I + + L D F VLHG FGEDG Sbjct: 51 EERERIIKNEKAVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDG 110 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------- 119 +Q + E+ ++PY ++++++SMDK ++K + G+P+ P I + R D Sbjct: 111 TIQGLFEMADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKA 170 Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ + P IKP + GSS+G ++K + +S W+ +++L+E ++ Sbjct: 171 ILARAEKDLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWD--NKILVEACIEAR 228 Query: 176 ELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLA 231 E+ C V G+ V I +P FY YE KY+ N + +PA + K ++ A Sbjct: 229 EVECSVTGNTKT-VAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETA 287 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ G+SR DF D + K++ E+N PG T +S+FP+M +G + EL++ Sbjct: 288 IKAYEALDLSGLSRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMH 347 Query: 292 MVE 294 ++E Sbjct: 348 LIE 350 >gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] Length = 311 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 19/304 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58 +AV GG SSEREVSL SG+ACA+ALE + F+V + +D + A L P + F+ L Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADA--LPAGLDPQRHVVFSTL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + Y ++SAL+MDK +K+ ++ G+ V P + Sbjct: 63 HGTFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKK 122 Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172 + + V+KP GSS+G+ ++ + + LD++Q+ W +IE+ + Sbjct: 123 PRPEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQNGRW------IIERRI 176 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G EL GV+ ++ V EI PKS Y Y KY+ + ++ PA + + +++Q A Sbjct: 177 FGRELAVGVLNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQ 235 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A A GCR +R DF+ +++ LEIN PGM S+ P A G F L+ M Sbjct: 236 TAFAACGCRDYARVDFILGD-DHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAM 294 Query: 293 VEDA 296 V A Sbjct: 295 VTPA 298 >gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] Length = 324 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 34/317 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG SSE ++S+ SG L+ + V ++ + + +VL Sbjct: 5 IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 H+K D FN +HGN GE+G++ + LELL IP+T + AL+ +K + VV Sbjct: 65 SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ T + + + P IKP GSS GI ++ I +L+ Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++N +LIE +++G E++ GV+ + L +TEI V ++DF+ YE KY S Sbjct: 185 --AYNEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEI-VSENDFFDYEAKYEG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I K V+ +A ++ + G SR++++F ++ + ++LEIN PG+T S Sbjct: 241 EITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELL 289 I P+ A AG S +L Sbjct: 299 ILPQQAKEAGISLAQLF 315 >gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] Length = 310 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 11/301 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG ++EREVSL SG AC +ALE + + + +D L L+ D A NV+HG Sbjct: 16 LLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHGRG 75 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120 GEDG +QA L L IP + S +L SAL+MDK+R+K + + G+ P+ I + Sbjct: 76 GEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEALSV 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP GSS+G+ + + + ++ + ++ EQ++ G E T Sbjct: 136 AEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQYG---EVFAEQWIVGKEYTAA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L + + + DFY Y KY ++ + P + + +Q LA A +G Sbjct: 193 ILGDETLPLVRLETDQ-DFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTVGA 251 Query: 241 RGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL--WMVEDAS 297 G R D + D + WL E+N PGMT S+ P A AG SF EL+L M + + Sbjct: 252 SGWGRVDLMVDEAGQP--WLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTAEEA 309 Query: 298 C 298 C Sbjct: 310 C 310 >gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 351 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/337 (30%), Positives = 165/337 (48%), Gaps = 54/337 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG +AL G+ + ID+ Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62 Query: 39 --------------------DRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73 D +VGL ++ P D F LHG GE+G VQA+L+ Sbjct: 63 TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAADFVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKP 132 L I YT SG LAS ++MDK SK+++ + ++L + + Q P V+KP Sbjct: 123 LNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G ++ + + L ++ D++++E+++ G E + GV+ ++ EI Sbjct: 183 NSGGSSIGTRIVHDEAELAESL--KDAYRFDDEIIVEEFITGREFSLGVVNGQAMPAIEI 240 Query: 193 AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +Y YE K+ + ++T V P +I D++ E++R+A A+G R DFL + Sbjct: 241 VVNDG-WYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLTN 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 V+ +E N PGMTP+S+ P+ A AG S+ +L Sbjct: 300 DTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 334 >gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 323 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 166/297 (55%), Gaps = 17/297 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L AGF V DV+ ++ +A +P++ + ++HG+ Sbjct: 9 IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILVNRFT 117 GEDG +Q +LE L IP+ S + S L+ +K +K +++S G+P P L + Sbjct: 69 GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128 Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +H +S P VIKP GGS+LG+ + + ++ ++ +G +L++EQ + Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAMVD--AFAYGQKLMVEQRI 186 Query: 173 DGIELTCGV--MGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG ++ V +GD + + + + Y Y+ +Y++ + + +PA++ + +++ Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEISTDGGRYDYDARYTTDETEYFVPARLESNALADLRA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSF 285 A AH A+G R +SR DF+ D ++++ NV PGMT S+ P+ A A YSF Sbjct: 247 AAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSF 302 >gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] Length = 349 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 167/352 (47%), Gaps = 63/352 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSV----------- 42 + VL GG+S ER VSLSSG AL G KV+ +D+ DR+V Sbjct: 3 IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62 Query: 43 ---------------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 G++ + D+ + LHG GEDG +QA L+LL Sbjct: 63 KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVV-------SSCGVPVCPSILVNRFTMDSQHLISPPY 128 +PYT SG L SA++MDK +K++V S C V V L M+ L P Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLVAHKVRTPSWCTVTVTEENLEQ--LMEETKL---PV 177 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 V+KP+ GSS+G+ + + L S G + ++EQYV G E+ V+ +L Sbjct: 178 VVKPIASGSSIGVTIAHTKDDLRRGL--EESIRLGGRTVLEQYVKGREIQVAVLNGKALP 235 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI +P++DFY Y KY + V PA+IP + K+V A + +G SR+DF Sbjct: 236 SIEI-IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADF 294 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + ++LEIN PGMTP S+ P+ AA G + L +V AS L+ Sbjct: 295 IVTE-DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIV--ASSLK 343 >gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668] gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668] Length = 312 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57 +AVL+GG S+EREVSL+SG+ L DAG D + LA LK + AFN Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 69 LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +Q + + P +KP GSS+ + +K + L + H +++E+ Sbjct: 129 DYAARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186 Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G E T + D L + I VP +FY Y KY + ++ +++P + E +R+ Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +GC R+DF+ D F LE+N PGMT S+ P+ A G + EL++ Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304 >gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] Length = 376 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 144/269 (53%), Gaps = 26/269 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG VQ + E+ +P+ G+LAS+ +MDK +K ++ + G+PV P + Sbjct: 96 DVVFPVLHGTYGEDGTVQGVFEMAGVPFVGCGVLASSAAMDKETTKILLKNAGIPVVPYM 155 Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 ++R ++S L P +KP GSS G + + + + L+++ SW Sbjct: 156 CISRSQINSSSLYDKLIEEAIEKLEFPLFVKPCAAGSSDGASLARNKRELSFALMEAFSW 215 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI------------AVPKSDFYSYELKYSS 208 ++ ++LIE+ +D E+ C V G++ +E VPK DFY Y+ KY+ Sbjct: 216 DN--KVLIEKAIDAREVECSVTGNSVTATSESDCTLLKAYGPGEIVPKHDFYDYDAKYND 273 Query: 209 LNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + +PA + D + ++ A A+ I G+SR DF D + +++ EIN PG Sbjct: 274 PDGAELKIPALLSDDKLELIRETAKKAYSVINASGLSRVDFFVDRKTGEIYLNEINTIPG 333 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S+FP+M G + EL+ +++++ Sbjct: 334 FTKISMFPKMCDADGLEYSELIDYLLKEG 362 >gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514] gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 359 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 105/340 (30%), Positives = 179/340 (52%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------VG-------- 43 +AVL GG S E EVSL S K+ + L+ +++ + + + VG Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65 Query: 44 ------LVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 ++ A K D+ F VLHG GEDG +Q +LELL++PY Sbjct: 66 KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 + +L+SAL MDK+ +K++ G+P ++V ++ +HL P +V KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFV-KPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + ++ +P L ++ ++ +LLIE+ +D E+ C V+G+ + + + Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPEASIAG 242 Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFL 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 D + ++ E+N PG T +S++P++ +G S+ LL Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLL 341 >gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-63q42] Length = 366 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159 V SIL+ ++F + + ++ P IKP++ GSS GI I K++ + +DL + Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + H ++++IE+ +DG E+ C V+G+ L V EI + K F+ Y KY+ +S +P Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I LD K +Q A + ++ +GC G +R D P S ++ + E+N PG T S +P Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344 Query: 277 MAAYAGYSFRELLLWMVE 294 M G SF E+L ++E Sbjct: 345 MMKGIGLSFEEILDKIIE 362 >gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 363 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 175/343 (51%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P + ++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R + E+N PG T +S++P++ +G ++ EL+ ++ Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLI 344 >gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99] gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99] Length = 373 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 152/268 (56%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK +K++ S+ Sbjct: 104 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSA 161 Query: 103 CGVPVCPSILV--NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+P+ P ++ +R ++D + L + P +KP +GGSS+G+ + +P + ++ Sbjct: 162 AGLPIGPHAVLRPSRQSLDREELQRLGLPAYVKPARGGSSIGVSRVSSFDELPAAI--AA 219 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYSYELKYSS 208 + H ++++E ++G EL CGV+ D L+ + EI V + FY +E KY Sbjct: 220 ARRHDPKVIVEAAINGRELECGVLEFPDGRLEASTLGEIRVAGVRGREDGFYDFETKYLD 279 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + +PAK+ D+ V++LA A +AI C+G++R DF + E+N PG Sbjct: 280 DAAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVDFFLTDDGPVIN--ELNTMPGF 337 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P M +G + LL MVE A Sbjct: 338 TTISMYPRMWVASGVDYPTLLATMVETA 365 >gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] Length = 293 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 148/294 (50%), Gaps = 14/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+ER +SL SG+A L + D + D F +LHG Sbjct: 2 IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS SMDK R+K + + + PSI+ N +D Sbjct: 62 RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIAN---IDQ 118 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I+P P+ +KP GSS+GI K D + L+ +W + LIEQ++ G Sbjct: 119 P--INPINFPLPWAVKPTLEGSSIGI--SKVDNQMQLNDALMLAWQYAPYALIEQWIKGD 174 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++GD +L V I + +FY YE KY S + ++ P + L K +Q +A A Sbjct: 175 EYTVAILGDKALPVVRI-ITDQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAF 233 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AI +G R DF+ + K + LEIN PGMT S+ P A G SF +L+ Sbjct: 234 FAINAKGWGRVDFIINQ-HNKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLV 286 >gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] Length = 319 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 142/248 (57%), Gaps = 8/248 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V++ GVPV P + Sbjct: 75 DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 134 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V + S PP+ +KP GSS+GI +++ Q L+ + ++ + ++ ++E+ Sbjct: 135 AVRK-GEPSMVPFDPPFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + + EL GV+G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ +G RG++R DF +V+ E+N PG TP S++P + G ++ EL Sbjct: 252 ELALKAYKVLGVRGMARVDFFL--AEGEVYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 309 Query: 289 LLWMVEDA 296 L +VE A Sbjct: 310 LRRLVELA 317 >gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 300 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 9/296 (3%) Query: 1 MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNV 57 M VL+ GG S ER+VSL+ AL+ G +V +D+ LV + D A Sbjct: 1 MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIIN 60 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE + +PY SG+ S L+++K SKQ ++ G+ L F Sbjct: 61 LHGAPGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLY--FP 118 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 H + PP + KP +GGSSL + + + + L Q S + ++L+E+ ++G E+ Sbjct: 119 QGRLHHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSEH---EILVEELINGHEV 175 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 +C V+ + L I K DF+ Y KY + + PA I + + +Q ++ AH+ Sbjct: 176 SCAVLDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRI 235 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G R SRSDF+ D ++ LE N PGMT S+ P+ A AG F EL+ ++ Sbjct: 236 LGLRHYSRSDFMLD-QQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLL 290 >gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + LV D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-66c26] gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CIP 107932] gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-76w55] gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-97b34] gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-37x79] gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196] gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile R20291] gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CD196] gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile R20291] Length = 366 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159 V SIL+ ++F + + ++ P IKP++ GSS GI I K++ + +DL + Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + H ++++IE+ +DG E+ C V+G+ L V EI + K F+ Y KY+ +S +P Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I LD K +Q A + ++ +GC G +R D P S ++ + E+N PG T S +P Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344 Query: 277 MAAYAGYSFRELLLWMVE 294 M G SF E+L ++E Sbjct: 345 MMKGIGLSFEEILDKIIE 362 >gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147] gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786] Length = 312 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 164/303 (54%), Gaps = 23/303 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL+GG S+ER+VSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFARAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ +++ P +KP GSS+ ++ +K + L + H +++E+ Sbjct: 128 DDYAARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSADA--LPAALEEAAKHDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--V 227 ++ G E T + D L + +I VP +FY Y KY + ++ +++P LD KE + Sbjct: 186 SIEGGGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIADDTQYLIPCG--LDAAKEAAL 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +R+A A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ E Sbjct: 243 KRIARRAFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSE 301 Query: 288 LLL 290 L++ Sbjct: 302 LVV 304 >gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis] gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis] Length = 349 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 54/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S+E EVSL S A + F + I + RS Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 42 ------VGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +V++ +K DL F VLHG GEDG +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ + ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVT 190 + GSS GI + + Q LD ++ H ++++E+ ++G E+ C V+G L V Sbjct: 186 RAGSSFGITKVIEKQE--LDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + Sbjct: 244 EIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFY 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 P S ++ + E+N PG T S +P M G SF ++L Sbjct: 303 TP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQML 340 >gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 166/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 238 ALKCSVYARVDMMVK--DGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETS 295 Query: 297 SCLR 300 +R Sbjct: 296 LKVR 299 >gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] Length = 331 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 111/331 (33%), Positives = 170/331 (51%), Gaps = 39/331 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------SQIDVDRS-VG 43 +AVLMGG SSE E+SL+SG ++L+ ++V + +D+ Sbjct: 6 IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 A K D +N +HG GEDG +QA LELL IP T G SAL+ +K S V+ Sbjct: 66 FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125 Query: 101 SSCGVPVCPSILVNR---FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ VN+ M ++L + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 L +++ +Q+LIE ++ G E++ GV G L V EI VP DF+S E KYS Sbjct: 186 L--DNAFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEI-VPDGDFFSLEAKYSG- 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S ++PA++ +VQ L ++ +G +GI R DF+F K ++E+N PG++ Sbjct: 242 KSQEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFH--EGKPHFVEVNTNPGLS 299 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SI P AG S E+ +E +C++ Sbjct: 300 KESIIPREFKAAGLSLTEVFGKAIE--TCIK 328 >gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 363 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 176/343 (51%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64 Query: 41 ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 S G L + KP D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++ R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNHAPQVSVCG 242 Query: 194 --VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R++ E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 302 VTDARQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 345 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 175/345 (50%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 SVG ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA+ MDK +K+++ G+ V P +++R FT + L P IKP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQL-GLPMFIKP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G D + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F R + E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345 >gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile ATCC 43255] Length = 366 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F +LHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPILHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159 V SIL+ ++F + + ++ P IKP++ GSS GI I K++ + +DL + Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + H ++++IE+ +DG E+ C V+G+ L V EI + K F+ Y KY+ +S +P Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I LD K +Q A + ++ +GC G +R D P S ++ + E+N PG T S +P Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344 Query: 277 MAAYAGYSFRELLLWMVE 294 M G SF E+L ++E Sbjct: 345 MMKGIGLSFEEILDKIIE 362 >gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] Length = 372 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 22/256 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LE+ +PY G+ ASA MDK K V+ + G+PV P + Sbjct: 106 DVVFPLLHGPFGEDGTIQGMLEMAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYV 165 Query: 112 LVN-RFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + R D + + S P +KP + GSSLGI + + + +P + +++ H Sbjct: 166 VATARKWRDERDQVLADVAKMSFPVYVKPARAGSSLGITRVARIEDVPAAV--AAAQIHD 223 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIA---------VPKSDFYSYELKYSSLNS-TH 213 ++LIEQ V+G E+ C V+G D T A +P+ FY +E KY + T Sbjct: 224 PKVLIEQGVNGREIECAVLGGRG-DTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTM 282 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA +P +I ++++ A A GC G+SR DF P + F +E+N PG TP S+ Sbjct: 283 SIPANVPEEISEKIRAQAIATFDAFGCEGMSRVDFFLTP-EGETFVIELNTIPGFTPFSM 341 Query: 274 FPEMAAYAGYSFRELL 289 +P + G + +LL Sbjct: 342 YPVLWENTGLPYSQLL 357 >gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 344 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 142/248 (57%), Gaps = 17/248 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF LHG +GEDG +QA+LE IPYT G+LASAL+MDK++SK++ + G+P P Sbjct: 92 DIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYR 151 Query: 112 LVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKK-DQS--IPLDLLQSSSWNH 162 ++ + L+S P VIK GGSS+GI + K D++ I DL + S Sbjct: 152 VIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGIGIAKNLDEAGKIAQDLFKDS---- 207 Query: 163 GDQLLIEQYVDGIELTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 ++LL E+++ G E +CG + G+ L TE+ + +++ +E KY+ V PA+ Sbjct: 208 -NRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYFDFEAKYNG-ECQEVTPAEFAP 265 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ +Q L AH A+G G SR+D ++F +E N PGMTP S+ P+ AA Sbjct: 266 ELTARIQELVKNAHYALGGAGYSRTDVRITK-DGELFAIETNTLPGMTPTSLLPQQAACV 324 Query: 282 GYSFRELL 289 G ++ +L+ Sbjct: 325 GITYSQLI 332 >gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 300 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 9/292 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMD 119 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + + N +D Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVK--EGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] Length = 321 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 160/315 (50%), Gaps = 21/315 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ AL AG S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S A+ L+ DK +K + + G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ +++ ++P ++ ++ +GD LIEQ + Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVD--AYTYGDVALIEQLI 188 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ GV+ G +L TEI VP S Y YE +Y++ + PA+I + Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEI-VPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAS 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+A+G +SR D + D F LE+NV PG+T S+ P+ A AG +L Sbjct: 248 TAAVGIHRALGIGQMSRVDIIIDAAGEPWF-LEVNVIPGLTETSLLPQGLAAAGIEVGDL 306 Query: 289 LLWMVE---DASCLR 300 + E DAS +R Sbjct: 307 YRRLAEAARDASTIR 321 >gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] Length = 377 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LE+ IPY +G+LASA+ MDK+ K+V + G+P C Sbjct: 106 DVIFPLLHGTFGEDGTIQGLLEMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFR 165 Query: 112 LVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 NR D + + P IKP GSS+GI K + + + + ++ + Sbjct: 166 YFNRTQWDKETDYYVTEIEVSLGYPCFIKPANLGSSVGISKAKNREELIEAI--NYAFRY 223 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++++E++VD E+ V+G+ + EI P +DFY Y+ KY S +PA I Sbjct: 224 DRKVIVEEFVDAREIEVSVLGNDEPKASVPGEIR-PSNDFYDYKAKYIDGTSVMEIPANI 282 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + V+ +A A+QAI G+SR DF ++F E+N PG TP S++P M Sbjct: 283 PALTSEAVREMAIRAYQAIDGSGLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQ 342 Query: 280 YAGYSFRELLLWMVE 294 G +RELL ++E Sbjct: 343 ETGLPYRELLDTLIE 357 >gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] Length = 304 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca] gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39] Length = 358 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 173/344 (50%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48 + +L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K S G+P V R + S I P P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS+GI ++ Q + L +++++ ++++E V+ EL C V+G+ AS+ V Sbjct: 186 LGSSVGISKVRSRQELETALDAAATYDR--RIIVEAGVEARELECAVLGNDYPKASV-VG 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI+ SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 243 EISY-NSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFY 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V EIN PG T +S++P++ + G SF EL+ ++E Sbjct: 302 IEKTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIE 345 >gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] Length = 360 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQID------VDRS 41 +A++ GG SSE +VS+ S +A++ + FK ID + Sbjct: 6 LALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAP 65 Query: 42 VGLVLAHLKP--DLA---------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + VL +P DL F +LHG +GEDG +Q + E+ ++PY SG+LAS+L Sbjct: 66 LRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLC 125 Query: 91 MDKMRSKQVVSSC--GVPVCPSILVNRFTMDSQHLISP----------PYVIKPLKGGSS 138 MDK+ K+ V++ +PV P I V+ + + P +KP GSS Sbjct: 126 MDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSS 185 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-----EIA 193 +G V + D LD + + Q++IE+ +D E+ V GD D EI Sbjct: 186 VG--VSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +PK ++Y+YE KY +++ +P ++P +Q LA A +A C G++R DFL + Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S + + E+N PG T +S++P++ AG S+ EL+ +V+ Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVD 344 >gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402] Length = 368 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 154/303 (50%), Gaps = 21/303 (6%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66 ERE + + KA +D +V+ I + + L D F VLHG FGEDG Sbjct: 51 EERERIIKNEKAVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDG 110 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------- 119 +Q + E+ ++PY ++++++SMDK ++K + G+P+ P I + + D Sbjct: 111 TIQGLFEMADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKA 170 Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ + P IKP + GSS+G ++K + +S W+ +++L+E ++ Sbjct: 171 LLARAEKDLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWD--NKILVEACIEAR 228 Query: 176 ELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLA 231 E+ C V G+ V I +P FY YE KY+ N + +PA + K ++ A Sbjct: 229 EVECSVTGNTKT-VAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETA 287 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ G+SR DF D + K++ E+N PG T +S+FP+M +G + EL++ Sbjct: 288 IKAYEALDLSGLSRVDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMH 347 Query: 292 MVE 294 ++E Sbjct: 348 LIE 350 >gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] Length = 304 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S ERE+SL SG+ A+ L G +V +D + L LKPD F LH Sbjct: 3 IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G GEDG +Q +L +L IPY S + AS ++MDK +K V G+P I V + Sbjct: 63 GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + P+++KP GS++G+ +++ + L ++ D+LL+E+++DG Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180 Query: 175 IELTCGV--MGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T G+ +G L + I V K D + Y+ KY + HV I ++ + + + Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G++R D++ + LEIN PGMT S+ P+ +AG F E L Sbjct: 241 KRICKIVGIGGVARLDYIVK--DETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298 Query: 292 MVEDA 296 +++DA Sbjct: 299 LIKDA 303 >gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 314 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 17/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ L L L ++ F LH Sbjct: 11 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------- 111 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 71 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 VN + + ++ P V+KP GS++GI ++K+ + + + + ++L+E+ Sbjct: 131 DFVNNQILKNFNM---PVVLKPACEGSTIGIEIVKESNDLKDAICR--VFKVESRILVEE 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+DG E T VM ++ V +I P S Y + KY+ + +++PA I ++ E+Q + Sbjct: 186 YLDGEEFTVPVMNGKAMPVIQIC-PHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLM 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + C G+ R D D + + LE N PGMT S+ P+ AA G SF +L Sbjct: 245 AEKGYHVAECEGVVRFDMRTDH-NGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCE 303 Query: 291 WMVEDA 296 ++E A Sbjct: 304 MILEGA 309 >gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 304 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] Length = 311 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 17/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ L L L ++ F LH Sbjct: 8 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------- 111 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 68 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 VN + + ++ P V+KP GS++GI ++K+ + + + + ++L+E+ Sbjct: 128 DFVNNQILKNFNM---PVVLKPACEGSTIGIEIVKESNDLKDAICR--VFKVESRILVEE 182 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+DG E T VM ++ V +I P S Y + KY+ + +++PA I ++ E+Q + Sbjct: 183 YLDGEEFTVPVMNGKAMPVIQIC-PHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLM 241 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + C G+ R D D + + LE N PGMT S+ P+ AA G SF +L Sbjct: 242 AEKGYHVAECEGVVRFDMRTDH-NGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCE 300 Query: 291 WMVEDA 296 ++E A Sbjct: 301 MILEGA 306 >gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 304 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC 12472] gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 366 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG SSE EVSL S + A++ F+VS I VD+ Sbjct: 6 VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65 Query: 41 ---------SVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 ++ LV A+ P D+AF ++HG GEDG +Q +L + I Sbjct: 66 RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ +G+L SA+ MDK +K+++ G+ V P + + R L + P +K Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K++ + L ++ ++H ++L+EQ V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKREADLRAALDEAFRYDH--KVLVEQAVIGREIECAVLGNERPRASG 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY + + V +PA IP + + ++ +A A QA+ C G++R D Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V E+N PG T +S++P++ AG S+REL+ ++E Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIE 348 >gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] Length = 304 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 187 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLKVR 306 >gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 378 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 16/260 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE+ E+ Y G+ +SA+SMDK +K V++ G+ V Sbjct: 114 DIVLPLLHGPYGEDGTIQGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWE 173 Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 L+ ++ + P +KP + GSS+GI ++ + + + + ++ NH Sbjct: 174 LITPLQWEADQGACLERAAALGFPVFVKPCRAGSSVGISKVESREGLAVAVKEAQ--NHD 231 Query: 164 DQLLIEQYVDGIELTCGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 ++++E V G E+ CGV+G A+ + EI VP +FY YE KY V PA Sbjct: 232 PRVIVEAGVVGREVECGVLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPA 291 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++ + V+ A A A+ C G++R DF D S V E+N PG TP+S+FP+M Sbjct: 292 EVAPAYEERVRETALRAFDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQM 351 Query: 278 AAYAGYSFRELLLWMVEDAS 297 A AG + L+ ++E+A+ Sbjct: 352 WAAAGVDYPSLIDALLEEAA 371 >gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 365 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 170/344 (49%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A++ GG S+E EVSL S K A AL+ F I + + Sbjct: 7 VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66 Query: 42 ----------VGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 V L+ KP D+AF +LHG GEDG +Q + +++++P Sbjct: 67 DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134 + G+ +SA MDK K++++ +P +L+ + + I P+ IKP Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+G+ IK + + L ++ ++L E+++ G E+ C VMG + Sbjct: 187 AGSSVGVHKIKTAEDFVVKL--KDAFQFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P+ +FYSYE KY N + +PA++ + K VQ++A +QA+GC G++R DF Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P + +++ EIN PG T +S++P+M +G S+++L+ +++ Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQ 347 >gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 304 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IEQY+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEQYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 + V+ GG+S+EREVS+++GK + L+ + ++V +I++ + + + L D A+ LH Sbjct: 3 IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G FGE G VQAILE I Y+ SGIL+SA+ MDK +K + + GV + + + Sbjct: 63 GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 S + ++KP +GGSS+G+ D+ + L + +++LIE+ GIE+ Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGE-NEVLIEEMKSGIEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + ++ I K F+ Y KY + + + + E+ A+ A Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYVYF-FEESLQNEINDFTIKAYNA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G +R D++ + K ++LE+N PGMT S+ P+ Y GYS+ E L +++++ Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297 >gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 311 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I +D + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY +++ + ++P ++ + V + + ++ Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYR 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLKIR 306 >gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 363 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S+G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA MDK +K+++ G+ V P +++R FT + L P +V KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 311 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 187 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLKVR 306 >gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] Length = 300 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 159/297 (53%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIVK--EGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293 >gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC 3502] gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 300 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + D + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 364 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 23/298 (7%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 + + E+ L+ G+ +AL +A F + +++V D+ F +LHG FGEDG Sbjct: 61 FARQEELKLAEGEGTQTAL-NAVFSRLYGEENQAV---------DIMFPLLHGTFGEDGT 110 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHLI-- 124 +Q + E+ +IPY +G+LASA MDK+ K++ + G+P C NR + SQH + Sbjct: 111 IQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLK 170 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+GI K + + + S+ D++++E++VD E+ Sbjct: 171 NIEDKLGFPSFVKPANLGSSVGISKAKNREQLKAAI--ESALRFDDKIIVEEFVDAREVE 228 Query: 179 CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ V V S++Y Y KY+ S +PA+I D ++ LA A + Sbjct: 229 VSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFK 288 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI GI+R+DF + E+N PG TP S++P + G S+RELL M+E Sbjct: 289 AIEGGGITRADFFVRRSDGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346 >gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae B728a] gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 363 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S+G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA MDK +K+++ G+ V P +++R FT + L P +V KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S+G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA+ MDK +K+++ G+ V P +++R FT + L P +V KP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFV-KP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G D + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 304 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 301 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 164/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V +V+ +D Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P +KP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 300 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + D + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 393 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 33/283 (11%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 AG S IDVD + F VLHG FGEDG +Q + EL IPY +G+L SA Sbjct: 110 AGHSASSIDVD-------------VIFPVLHGTFGEDGTIQGLFELANIPYVGAGVLGSA 156 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQHLISP----PYVIKPLKGGSSL 139 MDK K + + G+P+ + V R + L+ P +KP GSS+ Sbjct: 157 AGMDKDIMKALFKNAGLPIVKHMTVLRSQWQREPKKVKKLVESKLKYPVFVKPANLGSSV 216 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVT---E 191 GI + + L +++ ++ +L+IEQ V G E+ C V+G+ + E Sbjct: 217 GISKAHDSKELGPALDEAAKFDR--KLVIEQGVGGKKKKAREIECSVLGNDEPKASVPGE 274 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I VP +FY Y KY S +PAK+P K+VQ LA A QA+ G+ R DFL D Sbjct: 275 I-VPIKEFYDYAAKYLDEGSALEIPAKLPKSTQKQVQELAIRAFQAVDGSGLGRVDFLID 333 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P S K++ EIN PG T +S++P++ +G + +L+ ++E Sbjct: 334 PKSNKLYVNEINTMPGFTSISMYPKLWEASGLKYTDLITRLIE 376 >gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7] Length = 363 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S+G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA MDK +K+++ G+ V P +++R FT + L P +V KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1] gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 160/297 (53%), Gaps = 21/297 (7%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 VS SSG A A D G + + + + G VLA + D+ F VLHG +GEDG +Q +LE Sbjct: 70 VSGSSGTELALA-ADPGRRGQLLSLGDAAGDVLAAV--DVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129 L +PY +G+LASA MDK +K+++++ G+PV +++ +++ + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + ++P + + H ++++E + G EL CGV+ D L Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAI--ELARRHDPKVIVEAAIPGRELECGVLEFPDGHL 244 Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V EI V + FY +E KY + +PAK+ I + V+ LA A AI Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF + EIN PG T +S++P M A +G + LL MVE A Sbjct: 305 CQGLARVDFFLTDAGPVIN--EINTMPGFTTISMYPRMWAASGIDYPTLLATMVETA 359 >gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis] Length = 349 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 54/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S+E EVSL S A + F + I + RS Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 42 ------VGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +V++ +K DL F VLHG GE+G +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ + ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVT 190 + GSS GI + + Q LD ++ H ++++E+ ++G E+ C V+G L V Sbjct: 186 RAGSSFGITKVIEKQE--LDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + Sbjct: 244 EIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFY 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 P S ++ + E+N PG T S +P M G SF ++L Sbjct: 303 TP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQML 340 >gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a] gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a] Length = 367 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 139/263 (52%), Gaps = 17/263 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LE+ +PY SG+ ASA +MDK K ++ + G+PV P Sbjct: 108 DVVFPLLHGPFGEDGTIQGLLEMAGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYA 167 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +V + Q + P +KP +GGSS+GI + D LD ++ + ++L+ Sbjct: 168 VVRAGQTLSEADQDRLGLPVFVKPARGGSSIGI--SRVDAWADLDTAVKTARANDPKVLV 225 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221 E + G E+ CGV+G + +VP + FY +E KY S + +PA++ Sbjct: 226 EAAITGREIECGVLGRLDGPGAQASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSP 285 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 V+++A A +A+ C G++R D P V E+N PG TP S+FP M A + Sbjct: 286 SALARVRQVAVAAFEALDCAGLARVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAAS 344 Query: 282 GYSFRELLLWMV----EDASCLR 300 G ++ +L+ +V D + LR Sbjct: 345 GITYPDLVDRLVRLALRDGAGLR 367 >gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 324 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 41/327 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE +SL S + +++ + + + R+ V Sbjct: 4 VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63 Query: 48 -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D A+ ++HG GEDGL+Q L++L IPY+ G+L+++++ +K + Sbjct: 64 SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151 GV SIL+ + + +ISP P ++KP GGSS G+ + I Sbjct: 124 RGFGVETAKSILLKQ----REQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQ 179 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYS 207 L + +++N G+ +LIE ++ G E+TCG +L +TEI + K+DF+ +E KY+ Sbjct: 180 LAI--RNAFNEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEI-ISKNDFFDFEAKYN 236 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + PA+I + E+Q L + +G +GI R D++ P +++ LE+N PG Sbjct: 237 PGMVEEITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISP-KKEIKMLEVNTIPG 295 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294 MT S P+ AG + +E+L ++E Sbjct: 296 MTATSFIPQQIRAAGLNLKEILTEIIE 322 >gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] Length = 305 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 12/298 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V+ GG+ +EREVSL+SG A A+ALE A F V ++ +D + + F LHG+F Sbjct: 8 VMYGGVGTEREVSLNSGDAIAAALE-ANFPVERLRLDSAELPGTIDAATSIVFPALHGSF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQ 121 GEDG +QA+++ I Y SG AS L MDK R+K++ + V ++ + + + Sbjct: 67 GEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPLAD 126 Query: 122 HLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 LI VIKP GSS+G+ + + + L Q H L EQ + G ELT Sbjct: 127 ALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQI----HQGNWLAEQRIRGRELT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ ++ V EI + S Y Y KY+ ++ + PA++ + ++Q+ A + A Sbjct: 183 VGVLHGKAMGVVEI-ISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYAAC 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR +R DFL D ++LE+N PG+T S+ P+ AA GY F L +V A Sbjct: 242 DCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLVSAA 297 >gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065] Length = 300 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + D + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 369 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 107/347 (30%), Positives = 172/347 (49%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + V+ GG S E EVSL S ++ + L ++V+QI + + Sbjct: 7 VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66 Query: 43 GLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 GL A L P D+ F VLHG FGEDG +Q +LE+ + Y Sbjct: 67 GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+L SA+ MDK K V+ + G+PV S+LV R ++ + L P+ KP Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS--LDV 189 GSS+GI + LL+++ ++ ++LIE+ V D E+ V+G+ V Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAARYDR--RILIERGVPDAREIEVSVLGNDEPIASV 244 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VP +FYSYE KY S ++PA + + + +++LA A++AI C G++R DFL Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + + F EIN PG T +S++P++ +G S+ L+ ++E A Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELA 351 >gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 304 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IEQY+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEQYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKPLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] Length = 304 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ AA AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] Length = 311 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 12/293 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG ++ER VSL SG+ A+ L G +V ++D + G D AFN+LHG Sbjct: 11 LAVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVDTADN-GWQQQLKGVDFAFNLLHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE IPY+ SG+L SAL+MDK R+K + + G+P +L+NR + + Sbjct: 70 PGGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNRDS-EW 128 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +I P +KP + GSS+G+ + ++S +G ++ EQY++G E T Sbjct: 129 QAIIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAAS--YGTAVMAEQYIEGSEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L I + FY +E KY S ++ P+ + + +LA A A Sbjct: 187 VAILGDRALPSIRIETDAA-FYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAAT 245 Query: 239 GCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G R D L R W LE+N PGMT S+ P A AG S ELL Sbjct: 246 GASVWGRVDVL---RRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELL 295 >gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 364 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 23/298 (7%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 + + E+ L+ G+ +AL +A F + +++V D+ F +LHG FGEDG Sbjct: 61 FARQEELKLAEGEGTQTAL-NAVFSRLYGEENQAV---------DIMFPLLHGTFGEDGT 110 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHLI-- 124 +Q + E+ +IPY +G+LASA MDK+ K++ + G+P C NR + QH + Sbjct: 111 IQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLK 170 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+GI K + + + S+ D++++E++VD E+ Sbjct: 171 NIEDKLGFPSFVKPANLGSSVGISKAKNREQLKAAI--ESALRFDDKIIVEEFVDAREVE 228 Query: 179 CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ V V S++Y Y KY+ S +PA+I D ++ LA A + Sbjct: 229 VSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFK 288 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI GI+R+DF + E+N PG TP S++P + G S+RELL M+E Sbjct: 289 AIEGGGITRADFFVRRSDNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346 >gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] Length = 289 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 153/288 (53%), Gaps = 19/288 (6%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 1 MSLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126 L +PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ +SP Sbjct: 61 FLGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFET---LSPDELAARV 117 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P ++KP GSS+G+ K D + L ++ H +LIE+++ G E T G+ Sbjct: 118 AKLGLPLIVKPSHEGSSVGM--SKVDHANELQGALVEAFRHDTDVLIEKWLSGPEFTVGI 175 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +GD L I VP FY YE KY S + + P+ + ++ +++ LA A+QA+GC Sbjct: 176 LGDDVLPSIRIQVPGV-FYDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCS 234 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 235 GWGRVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 281 >gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802] gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802] Length = 351 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 167/342 (48%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLVLA 47 + +L GG S E EVSL+S +A A+AL+ +G + D+ + VL Sbjct: 6 VGLLFGGRSGEHEVSLNSARAIATALQ-SGENPQKYDIIPIYIQKNGVWQAGETAQQVLN 64 Query: 48 HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L Sbjct: 65 DAKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K + G+P I V+R + S + P P +KP Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI ++ + L ++S++ +++IE V E+ C V+G+ + + I Sbjct: 185 LGSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGE 242 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + Sbjct: 243 ITYNSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVE 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S++VF EIN PG T S++P++ G F EL+ +++ Sbjct: 303 DSQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQ 344 >gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613] Length = 300 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + D + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A] gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa] gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A] Length = 346 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/332 (30%), Positives = 173/332 (52%), Gaps = 40/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------SQIDVDR 40 +A+++GG S E +VS+S+G A + ++ A + + QI VDR Sbjct: 9 IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68 Query: 41 ---SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 SV L ++ DLA+ +HGN GE+G++Q ++L +PYT G SAL+ +K Sbjct: 69 NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128 Query: 97 KQVVSSCGV-PVCPSILVNRF---TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQS 149 VV S GV V S L++R +D + L+ P +KP GGSS+ +K + Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSD--FYSY 202 + + + + Q+L+E++++G E CGV+ DA +TE+ +P D ++ Y Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEV-IPHGDSEYFDY 247 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY+ +S+ V PA++ + ++ + + + + CRG+ R D+ ++P +++LE+ Sbjct: 248 NAKYNG-SSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEV 306 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG TP SI P+ A AG S +L ++E Sbjct: 307 NTIPGQTPESIVPQQARAAGISTADLYHMVIE 338 >gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 300 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 9/292 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ +V D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K I + + ++ +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAVELALKYDK--EVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C R D + + + LE+N PGMT S+FP+ A G SF ELL Sbjct: 239 LKCEVYVRVDMIVK--AGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELL 288 >gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 113/350 (32%), Positives = 167/350 (47%), Gaps = 56/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG+S ER VSLS+G A AL G +V+ +D+ V A L Sbjct: 3 IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62 Query: 51 --------PDLA----------------------------FNVLHGNFGEDGLVQAILEL 74 PDLA F LHG+ GEDG VQA +L Sbjct: 63 HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLISP---PYVI 130 + IPYT SG L SA++MDK +K++V+ V P +T D L+ P V+ Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVAD--VVSTPGWKTVSYTADDIDGLVETARLPLVV 180 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP+ GSS+G+ + + + L + + G + ++EQYV G EL ++ D +L Sbjct: 181 KPVASGSSIGVSIAHTAEELRTALTEGLAL--GGRTVLEQYVKGRELQVAILEDKALPSI 238 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI +PK FY YE KY + V PA I + ++++ A ++ +G SR+DF+ Sbjct: 239 EI-IPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFIL 297 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + ++LEIN PGMTP S+ P+ AA G + L +V+ + R Sbjct: 298 DA-DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346 >gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 167/351 (47%), Gaps = 66/351 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124 +LE L +PY GILASA+ MDK+ K+ + + VP P + + R D + L+ Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCG 180 P +KP + GSS+GI + DL+ + ++ H +L+EQ V G EL CG Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGD----DLVAAVEEAFRHDHVVLVEQGVTGRELECG 242 Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G + + + + ++ Y KY ++PA +P ++ + ++ L+ A AI Sbjct: 243 VLGGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAI 302 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G G++R DFL+D + +F E+N PG T S++P++ A +G ++ E++ Sbjct: 303 GGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVV 353 >gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266] gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 145/261 (55%), Gaps = 23/261 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DLAF LHG++GEDG +Q +L+ IPYT G+LASA++MDK +K V+ G+ P I Sbjct: 101 DLAFIALHGSYGEDGRIQGLLDTFGIPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGI 160 Query: 112 LVNRFTMDSQHLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + + S++ P P +KP GSS+GI + + L + Sbjct: 161 TI----LSSEYFADPKSTQKSIEEQFTWPVFVKPASLGSSVGISKVHHIGELIAAL--ET 214 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 + + ++L+E+ + G E+ V+G+ + +V+ EI P S+FY Y KY + + Sbjct: 215 ACRYDSKILVEKAMQGREVEVAVLGNNAPEVSITGEIE-PGSEFYDYADKYIHNAAKMYI 273 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+I ++ ++V++ A A++A+GCRG+SR DF D S + E+N PG T +S++P Sbjct: 274 PARISPELQEQVRKDALRAYKALGCRGMSRIDFFVDETSGTIVLNEVNTIPGFTDISMYP 333 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + A +G F EL+ +++ A Sbjct: 334 RLFAASGLPFNELVEKLLQFA 354 >gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801] gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801] Length = 351 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLVLA 47 + +L GG S E EVSL+S KA A+AL+ +G + D+ + VL Sbjct: 6 VGLLFGGRSGEHEVSLNSAKAIATALQ-SGENPQKYDIIPIYIQKNGVWQAGDTAQQVLN 64 Query: 48 HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L Sbjct: 65 DAKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K + G+P I V+R + S + P P +KP Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI ++ + L ++S++ +++IE V E+ C V+G+ + + I Sbjct: 185 LGSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGE 242 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + Sbjct: 243 ITYNSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVE 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S++VF EIN PG T S++P++ G F EL+ +++ Sbjct: 303 DSQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQ 344 >gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] Length = 366 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 171/345 (49%), Gaps = 56/345 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------------- 39 +L GG S E EVSL S + AL+ + ++V + + Sbjct: 9 LLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAAAG 68 Query: 40 -RSVGLV-----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 R VGL+ AH P + F VLHG +GEDG +Q +LE+ +PY Sbjct: 69 GRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPYVG 128 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIK 131 G+LAS+++MDK +K + G+ V P + R + S HL P +V K Sbjct: 129 CGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFV-K 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189 P GSS+GI +K+ + + + +++ ++ ++++EQ +D E+ V+G D V Sbjct: 188 PANLGSSVGITKVKRPEDLDRAMDEAARFDR--RIIVEQGIDAREIEVAVLGNDDPIASV 245 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P ++FY Y KY S S +PA +P D+ +E +R A +A +AI G++R DF Sbjct: 246 PGEILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + ++F E+N PG T +S++P++ +G + ELL +++ Sbjct: 306 LERGTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQ 350 >gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae 642] Length = 363 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 41 ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 S+G ++ D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132 P+ + +L+SA MDK +K+++ G+ V P +++R F ++ L P +V KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFV-KP 183 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 184 ANQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLI 344 >gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] Length = 319 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 150/299 (50%), Gaps = 15/299 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVLHG 60 VL GGISSEREVSL SG+ AL G +V D VD GL D AF LHG Sbjct: 14 VLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAY--DAAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L + +PYT G+ ASA++MDK +K + + G+ V + + D+ Sbjct: 72 TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQLLIEQY 171 + + V+KP GSS+G+ + +D L L +++ ++L+E+Y Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDAAEVLVEEY 191 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ +L V EI P+ Y ++ KY + + PAK+P K + Sbjct: 192 IHGREFTVAILDGKALPVIEICAPEGS-YDFQNKYYTDVVRYECPAKLPEASAKALAAAC 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GCRG SR D L + LEIN PGMTP S+ P A G S+ +L L Sbjct: 251 EKAFAVLGCRGWSRVDAL-ERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCL 308 >gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] Length = 321 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 152/299 (50%), Gaps = 15/299 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 VL GG S EREVSL SG+A AL+ AG++ ID+ + A P DL F VLHG+ Sbjct: 9 VLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLHGS 68 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMD 119 +GEDG +QA L+L PY SG LAS L MDK SK + G+ +LV + T D Sbjct: 69 WGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGTGD 128 Query: 120 SQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L+ ++KP GGS++ V+ + + L L ++ L+E+++ G Sbjct: 129 LPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEEL-LPALNAAWEQKSGGALVEEFIPG 187 Query: 175 IELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT + G +L EI +P S FY Y+ KY+ S + PA++ + + + Sbjct: 188 RELTVAMWDSGSGPEALPAVEI-LPASGFYDYQAKYTDGASRYESPARLSGEEARALSEA 246 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A +A+G R R+DF P V LEIN PGMT S+ P A AG + L Sbjct: 247 AVAAWRAVGLRDYGRADFRLPPDGEPVL-LEINTAPGMTSHSLVPMAAKSAGMELPDFL 304 >gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 303 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 151/301 (50%), Gaps = 18/301 (5%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + ++ + Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAI-----EAGEKV 115 Query: 125 SP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +P P+++KP GSS+G+ + +P LL++ H ++L+E ++ G E+ Sbjct: 116 TPDKIPFPLPFMVKPESAGSSIGVTRVDHFSDLPQALLEAE--KHSPRVLVEPFLAGREV 173 Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ L EI VP S FY+Y KY S H+ PA + D+ ++ A Sbjct: 174 QSAILDGRYLGAIEI-VPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAF 232 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + RG++R D L R V LE+N PG+T S+ PE+A G SF +L+ ++ Sbjct: 233 GLLELRGVARMDTLVLENGR-VVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSS 291 Query: 296 A 296 A Sbjct: 292 A 292 >gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 304 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ G+ I ++ Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W+ +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIIIKDGIP---YVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETS 295 Query: 297 SCLR 300 +R Sbjct: 296 LQVR 299 >gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68] gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68] Length = 395 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 154/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKADDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ AG S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDAAGVSYTELITRLIE 391 >gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] Length = 304 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ AA AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 162/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE VS+ S + S ++ + + S+ VD++ Sbjct: 5 IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64 Query: 44 LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + H + PD A+ +HG GE+G++Q ELL IPY+ +L SAL+ K Q + Sbjct: 65 SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+LVN R + + +I+ P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D ++IE ++DGIEL G + +TE+ V +++F+ Y KY T Sbjct: 183 EAAFKESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEV-VSQNEFFDYNAKYKG-EVT 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 241 EITPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIED 322 >gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] Length = 358 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 174/344 (50%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48 +A+L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K S G+P V R + S I P P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS+GI ++ Q + L +++++ ++++E V+ EL C V+G+ AS+ V Sbjct: 186 LGSSVGISKVRSRQELEAALDAAATYDR--RIIVEAGVEARELECAVLGNDYPKASV-VG 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI+ SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 243 EISY-NSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFY 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V EIN PG T +S++P++ + G SF EL+ ++E Sbjct: 302 IEKTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIE 345 >gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120] gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKP----- 51 + +L GG S E EVS+SS +A ASAL AG S+ ++ G LA P Sbjct: 3 VGLLFGGRSGEHEVSISSARAIASAL-SAGENASKYEILPFYIHKDGRWLAGEAPQQVLK 61 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG GEDG +Q +L Sbjct: 62 SGAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLT 121 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126 L++ P+ SG+L SAL MDK+ K G+P V R + S + P Sbjct: 122 LMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIE 181 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI ++ Q + D L +++ N+ +++IE V E+ C V Sbjct: 182 ASLGYPCFVKPANLGSSVGISKVRSRQELE-DALDNAA-NYDRRIIIEAGVAAREVECAV 239 Query: 182 MGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + V EI SDFY YE KY++ + ++PA IP DI +++Q +A A A+ Sbjct: 240 LGNDQPQASTVGEITF-NSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DF + + +V EIN PG T S++P++ A++G F EL+ +V+ Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQ 354 >gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] Length = 356 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLAHLKP 51 +AV+ GG S E EVSL S A S L+ A +++ I + + ++ ++A P Sbjct: 7 VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F VLHG +GEDG +Q +LEL PY Sbjct: 67 ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKP 132 G+ ASA+ MDK K ++ G+PV P +LV R + + + P +KP Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190 GSS+G+ ++ + L +++ ++ +L++EQ + E+ V+G+ + + Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAARYDR--RLIVEQGIPAREIEISVLGNDEVVASIP 244 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +P ++Y Y KY S ++PA + +VQ LA A QAI G++R DFL Sbjct: 245 GEI-IPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFL 303 Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + W+ E+N PG TP+S++P+M A +G S+ +LL +V+ Sbjct: 304 LD-RDQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVD 348 >gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 331 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 157/315 (49%), Gaps = 24/315 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + +RF+ Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V+++ S+P ++ +++ L+E Sbjct: 143 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVREAASLPAAMVGCFAYDQ--TALVE 197 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +YV G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ Sbjct: 198 RYVPGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTA 256 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F Sbjct: 257 RVTEVALAAHTALGLRDVSRVDLIVD-AGGDPHVLEVNVSPGMTETSLLPLAIQAAGLDF 315 Query: 286 RELLLWMVEDASCLR 300 +L +V A+ R Sbjct: 316 GRVLGTLVTRAAARR 330 >gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 331 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 157/315 (49%), Gaps = 24/315 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + +RF+ Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V+++ S+P ++ +++ L+E Sbjct: 143 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVREAASLPAAMVGCFAYDQ--TALVE 197 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +YV G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ Sbjct: 198 RYVPGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTA 256 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F Sbjct: 257 RVTEVALAAHTALGLRDVSRVDLIVD-AGGDPHVLEVNVSPGMTETSLLPLAIQAAGLDF 315 Query: 286 RELLLWMVEDASCLR 300 +L +V A+ R Sbjct: 316 GRVLGTLVTRAAARR 330 >gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 163/346 (47%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 +AVL GG S+E VSL S A + L+ A + + Sbjct: 6 IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65 Query: 34 --------SQIDVDRSVG--LVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78 + I DR L+LA P D AF VLHG GEDG VQ +LEL IP Sbjct: 66 RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPL 133 G L SA+ MDK + ++ +S G+ V S L + D +S P +KP Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VT 190 + GSS GI + +P + +++ H D+++IE+ V G E+ C V+G +L V Sbjct: 186 RSGSSFGITRVTDRADLPQAV--AAALEHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI + + F+ Y KY L S +PA+I + +Q+ A A++A+GC G +R+DF F Sbjct: 244 EIELTQG-FFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFF 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P VF EIN PG T S +P M A G F L+ +VE A Sbjct: 303 TPEGEIVFN-EINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347 >gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 304 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+YV G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYVKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E Sbjct: 238 VLKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens] Length = 327 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ + ++V IDV + L+ D A LHG Sbjct: 17 VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+V+ + G+ + ++R FT Sbjct: 77 TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136 Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ P +KP GGSS+G+ + + +++ L ++ W+ +++E V G Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIGVQRVDRQEALRAALAEAFRWDA--SVVVESMVTG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TC ++ L V I ++++ YE KYS P +P D+ V+ A Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAKYSD-GGAEERPITLPSDVEARVREAALAC 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL ++E Sbjct: 254 YRVLQCRVYARVDMILQ--DGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311 >gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 159/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV GG S+E +S+ +G L G V I + + G V Sbjct: 4 IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +++L D+ F LHG GEDG +Q L +L +PYT SG+ Sbjct: 64 SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGS 137 ASAL+MDK R+ Q+ G V P V + +T + + P +KP++GGS Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--------MGDASLDV 189 S+ I + + L + + +++ + ++ G E++CGV + +L Sbjct: 184 SVSTYKITNQEQLSRQL--ALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I VQ LA AH ++GCRG SRSDF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + LE N PGMT S+ P+ A AG + E+ ++E Sbjct: 301 I--VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343 >gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442] gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442] Length = 294 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 13/298 (4%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLHGN 61 MGG SSERE+SL SG A +AL+ G D + L+ LK AFN+LHG Sbjct: 1 MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNILHGT 57 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++L + D+ Sbjct: 58 YGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDA 117 Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +KP + V+K L + + +++ E+++ G E +C Sbjct: 118 VEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGGEYSC 175 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAI 238 V+ L I +P ++FY YE KY+ ++ + P++ + + + R LA QAI Sbjct: 176 PVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAI 234 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 235 GAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291 >gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii] Length = 306 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 159/300 (53%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SEREVS + ++ +AL+ G +V ++DV V A +A N++HG Sbjct: 9 IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG +QAILE IPYT +G+ +S ++ DK +SK+ + GVP S + +D Sbjct: 67 TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRS---QNYLLDG 123 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 SQ L IS P V KP + GSS+G+ + + + + ++ G L+E++V+G ELT Sbjct: 124 SQPLDISIPLVSKPPREGSSVGVNICRTEAEWVSAIEEAKKC--GTSTLVEEFVEGKELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234 G++GD L + I P FY KY LN T + PA + + VQ A A Sbjct: 182 IGILGDQVLPIIHIE-PVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ G R D + + F LEIN PGMT S+ P+ A G F +L + ++E Sbjct: 241 FKSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIE 299 >gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1] gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 304 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ AA AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5] Length = 328 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 172/329 (52%), Gaps = 35/329 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG S ERE++L S SAL+ + ++ ID+ D Sbjct: 6 IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + D A ++HG GEDG +Q L+++ +PY+ + +S ++ DK+ +K+ V Sbjct: 66 SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125 Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLL 155 + G+ + I + + T D +I+ P IKP GSS G+ V +D+ +P Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPA--- 182 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNS 211 +++ D++LIE+ ++G E+ CG+M + +TEI V K DF+ Y+ KY+ S Sbjct: 183 VEAAFAQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEI-VSKKDFFDYQAKYTEGYS 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I +I +E+ R+ +A++A C G+ R DF+ P K + +EIN PGM+ Sbjct: 242 DEITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTP-EGKPYMIEINSIPGMSAG 300 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SI P+ A G + E+ ++ D +C + Sbjct: 301 SIVPKQAKAMGMTLGEMFDLVIAD-TCRK 328 >gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] Length = 304 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ AA AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 382 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 164/343 (47%), Gaps = 58/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S+ER+VSL +G +L G + + +D+ +G + Sbjct: 42 IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101 Query: 46 LAHLKP-------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 +LK D+ F LHG+ GEDG VQA +L Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIK 131 L I YT + L+SA+SM K +K+V+ G+P+ + T+ H I P V+K Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGV-----TLHKGHKIEYVPFPCVVK 216 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ + ++ L ++ S+ D +L+E++VDG E + V+ +L V E Sbjct: 217 PCCGGSSVGVSIAHNEKEFEDALDEAFSYE--DTVLVEEFVDGREFSVAVLDGKALPVIE 274 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I P FY Y+ KY + ++ PA IP DI ++Q A QA G +R D L D Sbjct: 275 IE-PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLD 333 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +F LEIN PGMT S+ P+ AA G S+ EL ++E Sbjct: 334 K-NNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIE 375 >gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 166/309 (53%), Gaps = 33/309 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V+ GG++ ER+VSL SG+ A+ L G V D++ +A +PD+ + ++HG+ Sbjct: 9 VVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHGSV 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------------- 107 GEDG +Q +LEL+ PY S A L+ K +K + + G+ Sbjct: 69 GEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQVG 128 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 P++L + + S+ +S P ++KP GGS+LG+ + + + ++ ++ +GD ++ Sbjct: 129 APAVL--QAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAMVD--AFAYGDTVM 184 Query: 168 IEQYVDGIELTCGVMGDASLDVTEI-AVPKSDF------YSYELKYSSLNSTHVLPAKIP 220 +EQ++ G E+ V+ D+ E+ A+P + Y Y+ +Y++ S PA++ Sbjct: 185 VEQFIPGREIAVSVV-----DLDELYALPPVEIVTDDGRYDYDARYNTGRSQFFAPARLT 239 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D EVQR+A H+ +G R +SR D + +++ +++NV PGMT S+FP+ A Sbjct: 240 ADETAEVQRVALEVHELLGLRHLSRVDLILGE-DGQIYLIDVNVAPGMTDTSLFPQAAEA 298 Query: 281 AGYSFRELL 289 AG SFR++L Sbjct: 299 AG-SFRDIL 306 >gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 293 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 150/295 (50%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG+A AL + + D L + D AF VLHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS +DK R+K + + + PSI+ + Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+++KP GSS+GI K D I L+ +W + LIEQ+++G E T Sbjct: 122 PIDFPLPWMVKPTLEGSSIGI--SKVDSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVA 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L V +I + FY YE KY S ++ P + + +Q +A A AI Sbjct: 180 ILGDKALPVVKI-ITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF+ + K + LEIN PGMT S+ P A G SF +L++ ++ + Sbjct: 239 KGWGRVDFIINQ-HNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292 >gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] Length = 326 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 146/262 (55%), Gaps = 27/262 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG +GEDG +Q EL +PY G+LASA +MDK +K++VSS G+ V + Sbjct: 69 DVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSAGIAVTDEV 128 Query: 112 LVNRF-TMD--SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGD 164 +V R ++D ++ + P +KP +GGSS+G+ + D +I + LQS S Sbjct: 129 IVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAELDDAIAV-ALQSDS----- 182 Query: 165 QLLIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + ++E + G E+ GV+ A+L+ TE + FY +E KY T Sbjct: 183 KAIVEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDG--EEGFYGFETKYLDEGVTAT 240 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA ++ ++++ LA A +A+GCRG+SR DF R EIN PG TP+S++ Sbjct: 241 IPAPYSEEVTQQIRSLAITAFRALGCRGLSRVDFFL--TERGPVLNEINTMPGFTPISMY 298 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P++ +G S+ ELL +++ A Sbjct: 299 PQVWKASGVSYPELLHTLIQTA 320 >gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 397 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 155/294 (52%), Gaps = 30/294 (10%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S +++ D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 103 DSGFGTSFVNLSDPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 162 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+++ G+P P I+V+ + +++ P +KP + GS Sbjct: 163 ASAACMDKHYTKVVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGS 222 Query: 138 SLGIIVIKKDQSIPLDLLQ-------SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 S G V K D++ L+ Q +++ H ++LIEQ +DG E+ C V+ + D Sbjct: 223 SFG--VTKVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEP 280 Query: 191 EIAVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGC 240 E + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ Sbjct: 281 EASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDG 340 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+SR D P V EIN PG TP+S++P+ G + EL+ ++E Sbjct: 341 AGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393 >gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 368 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 66/343 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 20 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79 Query: 39 --------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73 D +VGL VL L+ D F LHG GE+G VQA+L+ Sbjct: 80 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAVLD 139 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP------ 126 L +I YT SG LAS ++MDK SK+++ + I RF + + I P Sbjct: 140 LNDIKYTGSGTLASGIAMDKAISKEIM------LYNDIKTARFVVLHEEDGIHPQLDFGF 193 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P V+KP GGSS+G +++ ++ + L ++ D++++E+++ G E + GV+ + + Sbjct: 194 PVVVKPNSGGSSVGTMIVHDEEELADSL--RDAYRFDDEIIVEEFITGREFSLGVVNEQA 251 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + EI V +Y YE K+ + +T + P I +++ E++R+A + +G R Sbjct: 252 MPAIEIVVNDG-WYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGR 310 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 DFL + + V+ +E N PGMTP+S+ P+ A AG S+ +L Sbjct: 311 VDFLVN--DQGVYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 351 >gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] Length = 395 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P IKP + GS Sbjct: 161 ASAACMDKHYTKVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] Length = 373 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 19/266 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G V A + D+ F VLHG GEDG VQ +L+L + Y +G+LASA MDK +K++ Sbjct: 113 GEVFAQV--DVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLARE 170 Query: 103 CGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 G+PV +++ T + + + P +KP +GGSS+GI K D D + Sbjct: 171 AGIPVGEELILLQPRELTAEEKARLGLPVFVKPARGGSSIGI--SKVDSWEEFDAAVDLA 228 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN 210 ++H +++++E + G E+ CGV+ A + +VP FY ++ KY Sbjct: 229 FSHDNKVIVEAMIHGAEVECGVLQHADGSIVS-SVPAMLNGTEDGAEGFYGFDAKYVDST 287 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PA +P + KE+++LA A+GC GI+R DF EIN PG TP Sbjct: 288 VSATIPAPLPAETLKEIRQLAIRTFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTP 345 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S++P+M A G SF +L+ ++ A Sbjct: 346 ISMYPKMFAADGVSFGDLVSALIARA 371 >gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] Length = 702 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 153/294 (52%), Gaps = 8/294 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L+GG S+ERE+SL SG A A AL + GF V+ DV L+ + D+ + VLHG F Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVT-ECRLLPEMREADVVYPVLHGGF 377 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q ++E + + SG AS L+MDK+ +K+++ G+P +V R + Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++K GS+ GI+ +++ + D + +LL+E+Y+DGIE+T ++ Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEE--WDAALEKEFAMAGELLVEEYIDGIEITVPIV 495 Query: 183 GDASLDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239 L EI P FY Y+ K Y ++ + PA+ + + + R A + G Sbjct: 496 NGEVLPAIEIKSPHG-FYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 CR I R DF+ + LE N PG T S+ P+ A +G SF ++ +V Sbjct: 555 CRDILRVDFIVGK-DGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLV 607 >gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 351 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 66/343 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62 Query: 39 --------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73 D +VGL VL L+ D F LHG GE+G VQA+L+ Sbjct: 63 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP------ 126 L +I YT SG LAS ++MDK SK+++ + I RF + + I P Sbjct: 123 LNDIKYTGSGTLASGIAMDKAISKEIM------LYNDIKTARFVVLHEEDGIHPQLDFGF 176 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P V+KP GGSS+G +++ ++ + L ++ D++++E+++ G E + GV+ + + Sbjct: 177 PVVVKPNSGGSSVGTMIVHDEEELADSL--RDAYRFDDEIIVEEFITGREFSLGVVNEQA 234 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + EI V +Y YE K+ + +T + P I +++ E++R+A + +G R Sbjct: 235 MPAIEIVVNDG-WYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGR 293 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 DFL + + V+ +E N PGMTP+S+ P+ A AG S+ +L Sbjct: 294 VDFLVN--DQGVYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 334 >gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] Length = 367 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 150/275 (54%), Gaps = 20/275 (7%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + + + G VLA D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK Sbjct: 91 VSLGEAAGEVLA--SADVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 148 Query: 96 SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K++++S G+PV +++ + ++ + + P +KP +GGSS+G+ + +P Sbjct: 149 TKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVFVKPSRGGSSIGVSRVTAWDELP 208 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYS 201 + + H +++IE V G EL CGV+ D L+ + EI V + FY Sbjct: 209 AAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHLEASTLGEIRVEGVRGREDGFYD 266 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +E KY + +PAK+ D+ + ++ L+ A AI C+G++R DF + E Sbjct: 267 FETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAIDCQGLARVDFFLTDDGPVIN--E 324 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P M A +G ++ LL MVE A Sbjct: 325 INTMPGFTTISMYPRMWAASGVDYQTLLATMVETA 359 >gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] Length = 372 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/276 (34%), Positives = 149/276 (53%), Gaps = 21/276 (7%) Query: 35 QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 ++ V S G + D+ F +LHG FGEDG VQ ++EL +PY +G+LAS++ M+K Sbjct: 95 ELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIELTGLPYVGNGVLASSMGMNKH 154 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIK 145 +K + + GV V P + ++ S+H + P +KP + GSS+G V K Sbjct: 155 FTKLALEAAGVAVAPWVTISAVQW-SRHPDVWRQRASSLGLPVFVKPARAGSSVG--VTK 211 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVT-EIAVPKSDF 199 + LD ++++ L+EQ + G E+ CGV+ GD + V EI V DF Sbjct: 212 VTHADELDAALATAFAEDSTALVEQAMTGREIECGVLSGRDGGDTRVSVAGEIVVTGRDF 271 Query: 200 YSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 Y +E KY + + ++ PA++ ++QR A A +AIG G++R DF FD V Sbjct: 272 YDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIGGAGLARVDFFFDGAEFVVN 331 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG TP+S+FP+ A +G S+ EL+ ++E Sbjct: 332 --EINTLPGFTPISMFPKCWAASGMSYPELIDELIE 365 >gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 316 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 160/310 (51%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ + AL D G V + D D S+ L KPD A LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G +Q +LE+L +P+ + + DK +K +VS G + + T Sbjct: 66 GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q ++ P ++KP +GGS+LG V++ +P ++ + +GD +L E+ Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAMV--GCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++DG+E+ V+ G +L EI VP+ Y Y +Y++ + PA++ ++ + Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEI-VPEGGVYDYTARYTAGLTDFFAPARLSEEVAEA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V LA AH +G R ISR+D + V +LE+N PG+T S P AG S Sbjct: 243 VSDLAVSAHTLLGLRDISRTDAVVAS-DGTVHFLEVNSSPGLTETSTVPMALEAAGTSLG 301 Query: 287 ELLLWMVEDA 296 + +V+ A Sbjct: 302 AVFTDLVQRA 311 >gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100] Length = 379 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 145/269 (53%), Gaps = 24/269 (8%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G AH+ D+ F VLHG GEDG +Q + EL IPY +G+LASA MDK +K++ Sbjct: 116 GRTYAHV--DVIFPVLHGQNGEDGTIQGLFELAGIPYVGNGVLASAAGMDKEYTKRLAKQ 173 Query: 103 CGVPVCPSILV--NR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQS 157 GVP +++ NR T D Q + P +KP +GGSS+GI + +D + +++ Sbjct: 174 AGVPCGEELILAENRELTEDEQQRLGLPVFVKPARGGSSIGISKVDTWEDFAHAVEI--- 230 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----------GDASLDVTEIAVPKSDFYSYELKYS 207 +++H +++++E + G E+ CGV+ A L+ TE FY ++ KY Sbjct: 231 -AFDHDNKVIVEAMIHGREVECGVLQYPEGSVIASAPAMLEGTEDG--DEGFYGFDAKYL 287 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 T +PA I + EV+RLA +A+ C G++R DF F S +V EIN PG Sbjct: 288 DNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGLARVDF-FVTDSGEVILNEINTLPG 346 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S++P+M G + +LL ++ A Sbjct: 347 FTPISMYPQMFIAGGMGYPQLLDILIARA 375 >gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas albilineans] Length = 319 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 165/299 (55%), Gaps = 13/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57 +AVL+GG SSER+VSL+SG AL G +D + +L ++ D FN+ Sbjct: 20 VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVD---GIAALLERIRAGAVDRVFNI 76 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNR 115 LHG GE+G++Q +L L++P+T + +L SAL++DK+R+KQV + G+P I + Sbjct: 77 LHGGDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADA 136 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P +KP GSS+G+ + ++ L +++ + ++ +LL+EQ V G Sbjct: 137 DLAAAAAELGYPLFVKPSCEGSSVGVFRVLS--AVDLAPVRAFAADYAGELLMEQMVQGE 194 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T G++GD +L I VP D+Y Y KY + ++ ++ P D ++++LA A Sbjct: 195 EYTVGILGDIALPSIRI-VPVGDWYDYHAKYIAEDTQYLCPGLSGED-EVQIRQLALQAF 252 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A GC G R D + D + R + +EIN PGMT S+ P+ AA+ G L ++E Sbjct: 253 AAAGCSGWGRVDVMRDRV-RGLQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILE 310 >gi|218506497|ref|ZP_03504375.1| D-alanine--D-alanine ligase [Rhizobium etli Brasil 5] Length = 111 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/106 (68%), Positives = 85/106 (80%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+P Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIP 111 >gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] Length = 373 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 156/310 (50%), Gaps = 26/310 (8%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH--LKPDLAFNVLHGNFGEDGL 67 +E E + A + EDA VS + + GL L D+ F+VLHG +GEDG Sbjct: 52 TECERVRADAHAALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGT 111 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL- 123 +Q +L++ IPYT +SAL+MDK ++KQ+ +PV P + + +R + + L Sbjct: 112 IQGLLDMTGIPYTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQ 171 Query: 124 ---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 P +KP GSS+G + K+ + + ++ W+ D++LIE +D Sbjct: 172 KLMRQAETEFGYPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRWD--DKILIEPAIDA 229 Query: 175 IELTCGVMGDASLDVTEIAV-------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKE 226 E+ C V G+ S+ E+ P FY Y+ KY+ N + +PA + + Sbjct: 230 REIECSVTGN-SVSGGEVTAYTPGEIKPSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDV 288 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V++ A A++ + C G+SR DF D + ++ EIN PG T +S+FP+M AG S+ Sbjct: 289 VRKTAVKAYETLDCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYA 348 Query: 287 ELLLWMVEDA 296 +L+ ++ + Sbjct: 349 DLVELIITEG 358 >gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] Length = 364 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q + E+ +IPY +G+LASA MDK+ K++ + G+P C Sbjct: 95 DIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYC 154 Query: 112 LVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 NR D + + P +KP GSS+GI K + + + S+ Sbjct: 155 YFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANLGSSVGISKAKNREQLKSAI--ESALRF 212 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 D++++E++VD E+ V+G+ V V S++Y Y KY+ S +PA+I Sbjct: 213 DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIE 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ ++ LA A +AI GI+R+DF + E+N PG TP S++P + Sbjct: 273 PDVADRLRELAINAFKAIEGGGITRADFFVRRSDGAILINEVNTMPGFTPFSMYPLLWRE 332 Query: 281 AGYSFRELLLWMVE 294 G S+RELL M+E Sbjct: 333 TGVSYRELLDRMIE 346 >gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2 155] gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis] gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 373 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 147/268 (54%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G +LA + D+ F VLHG +GEDG +Q +LEL +PY SG+LASA MDK +K+++++ Sbjct: 104 GEILAAV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGSGVLASAAGMDKEYTKKLLAA 161 Query: 103 CGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+P+ ++ V ++ + + P +KP +GGSS+G+ + +P + + Sbjct: 162 EGLPIGDQVVLRPGVETLDLEQRERLGLPVFVKPARGGSSIGVSRVTAWDELPAAV--AL 219 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLD---VTEIAVP-----KSDFYSYELKYSS 208 + H ++++E V G EL CGV+ D L+ V EI V + FY + KY Sbjct: 220 ARRHDPKVIVEAAVIGRELECGVLEFPDGRLEASTVGEIRVAGVRGREDGFYDFATKYLE 279 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + +PAK+ D+ E+++LA A AIGC+G++R DF + EIN PG Sbjct: 280 DAAELDVPAKVDDDVADEIRQLAVRAFTAIGCQGLARVDFFLTDDGPVIN--EINTMPGF 337 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P M A G + LL MV+ A Sbjct: 338 TTISMYPRMWAAGGIDYPTLLAAMVDTA 365 >gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 352 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 173/340 (50%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------V 45 + +++GG+SSEREVSL+SG+ L+ ++ + +D GL + Sbjct: 7 VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66 Query: 46 LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 LK D AF LHG +G+DG +Q +LELL IPYT G++ASAL M Sbjct: 67 TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ-------HLISPPYVIKPLKGGSSLGII 142 DK ++++ + GV V S+LV + DSQ P KP++ GSS+G+ Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSD 198 V++ + + + + W+ +L+E+Y++G E +C V+ + L++TEI P+S+ Sbjct: 187 VVRDEADLERGMEDALKWDRA--VLVEEYLEGREFSCIVLEEEGQFHPLELTEIH-PQSE 243 Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256 F++Y+ KY P K IP D+ ++++ A +A+G R R D F+ + + Sbjct: 244 FFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGR 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + N GM P S F E AA AG ++ ++E+A Sbjct: 302 ILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 315 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 24/312 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VS+ SG+ A AL AG +V D+D ++ L +PD F LHG Sbjct: 9 VLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHGAT 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----- 117 GEDG VQ IL LL +PY S A + DK +K + + G+ + + + T Sbjct: 69 GEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRDLG 128 Query: 118 ----MDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +D+ P P +KP +GGSSLG + + +P ++ +++ + LIE+++ Sbjct: 129 THAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAMVACFAYD--ETALIERHI 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+ V+ G +L EI V S Y Y +Y++ + PA++ + K V+ Sbjct: 187 TGREIAVSVVDTGTGPQALPAVEI-VADSGVYDYAARYTAGITEFFAPARLTAEEAKSVE 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYA----GY 283 +LA AH + +SR+D + D + + W LE+NV PG+T S+ P A A G Sbjct: 246 QLAVRAHTTLDLSCVSRTDLILD--ADGIPWFLEVNVAPGLTETSLLPLAAGAADLDLGV 303 Query: 284 SFRELLLWMVED 295 +R+L+ ++ + Sbjct: 304 LYRDLVQAVIAE 315 >gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + VL GG+S ER +SL SG +ALE G+ V D+ LA L+ DL F LH Sbjct: 8 ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-GVPVCPSILVNRFTM 118 G FGEDG +Q++LEL I Y S L SA+ +K + +++S+ +P +I Sbjct: 68 GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLLSNTITMPRWKTITSEEELE 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +H P VIKP GSS+G+ + D L + L++E+Y+ G ELT Sbjct: 128 GWKHF---PAVIKPANEGSSIGVYIC--DTFEELQNKTTKVLKEYKTLILEEYIKGRELT 182 Query: 179 CGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++ L + E+ PK FY YE KY++ + ++PA I + +E+++L+ Sbjct: 183 ISIIEKGGQPVVLPILELK-PKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRI 241 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GCR +R D + + ++LE+N PG+T +S P A AG F EL+ +V+ Sbjct: 242 FTALGCRHFARIDGILK--ENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVK 299 Query: 295 DA 296 +A Sbjct: 300 EA 301 >gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 348 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 164/345 (47%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG SSER+VSLS+G A AL + G V +D Sbjct: 3 IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62 Query: 39 --------------DRSVGL----VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 DR+ G VL K D+ FN LHG+ GE+G +QA+ +LL I Y Sbjct: 63 HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKG 135 T SG L+M+K SKQ+ + G+P +++++ + + P V+KP Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ L + S H +++E+Y+ G E G++G L EI +P Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAIEI-IP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K FY Y+ KY + + PA I D + + + +G +R+DF+ D Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVD--EN 297 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ LE N PGMTPVS+ P+ AA F LL +++++ LR Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342 >gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] Length = 328 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55 +AVL GG+SSEREVSL SG+ AL ++ IDV S LV L + + Sbjct: 20 IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112 N+LHG GEDG VQ +LE L I YT IL SA+ M+K+ +K++ S V +L Sbjct: 80 NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139 Query: 113 ---VNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +N + L + P ++KP+ GSS+G+ +IK + SS + + Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVV---SSIKDSENYFL 196 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 E Y+ G E+T G++ ++ + K++ Y YE KY+ + +PAK+ +I Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +V A++ +GC G+SR D + +V+ +E+N Q GMT S P MA + Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIVGN-DNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315 Query: 285 FRELLLWMV 293 F +L+L+++ Sbjct: 316 FNDLVLYIL 324 >gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705] gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705] Length = 428 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 134 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 193 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 194 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 253 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 254 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 313 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 314 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 373 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 374 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 424 >gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] Length = 324 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 169/317 (53%), Gaps = 34/317 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAH--- 48 +A+ MGG SSE ++SL+SG ++ + ++ + D + V+ Sbjct: 5 VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D+ FN++HG GEDG +QA LELL IP T ++AL+ +K + V+ Sbjct: 65 SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124 Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ ++ +N+ T++ +IS P +K K GSS GI + + P L Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++L+E ++DG E++ GV+ +L +TEI V ++DF+ YE KY+ S Sbjct: 183 DVAFKEDDEVLVESFLDGTEVSVGVITYNTTITALPITEI-VSENDFFDYEAKYNG-QSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I EVQ++A ++ + +G++R++F+F + + +LE+N PG++ S Sbjct: 241 EITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIFH--NNEPHFLEVNTCPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELL 289 I P+ AA AG S ++L Sbjct: 299 IIPQQAAEAGISLKDLF 315 >gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 377 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 165/349 (47%), Gaps = 62/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124 +LE L +PY GILASA+ MDK+ K+ + + VP P + + R D + L+ Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP + GSS+GI + + L ++ H +L+EQ V G EL CGV+ Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDN--LIAAVEEAFRHDHVVLVEQGVTGRELECGVL 244 Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + + + + ++ Y KY ++PA +P ++ + ++ L+ A AIG Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G++R DFL+D + +F E+N PG T S++P++ A +G ++ +++ Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVV 353 >gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] Length = 309 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 152/284 (53%), Gaps = 11/284 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 AVLMGG ++ERE+SL SG+ AS LE AG V++ID +V L D FN+LH Sbjct: 11 FAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRID--PAVEQWADQLSDIDFVFNLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S G+P P + D Sbjct: 69 GPGGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPT-PDFTLLTADTD 127 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 LI +KP GSS+G+ + + ++ ++ G ++ E +V G E Sbjct: 128 WSDLIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEY 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I P S+FY ++ KY S N+ P+ + E+ LA A A Sbjct: 186 TVSILGDRALPAIRIE-PASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYA 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + R D + D +S LE+N PGMT S+ P MAA A Sbjct: 245 VDAAVWGRVDVMRD-ISGAWQLLEVNTIPGMTSHSLVP-MAARA 286 >gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 395 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 397 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 103 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 162 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 163 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 222 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 223 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 282 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 283 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 342 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 343 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 393 >gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 395 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 26/272 (9%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+ Sbjct: 123 LGHV--DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGI 180 Query: 106 PVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--DQSIPLDLL 155 P P + V+ + +++ P IKP + GSS G+ ++K D+ D L Sbjct: 181 PTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRL 240 Query: 156 Q---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYE 203 +++ H ++L+EQ +DG E+ C V+ + D E + P FY ++ Sbjct: 241 AAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFD 300 Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY +++HV +PA +P+ + ++V+ +A A +A+ G+SR D P V EI Sbjct: 301 SKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEI 359 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG TP+S++P+ G S+ EL+ ++E Sbjct: 360 NTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] Length = 302 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A ++L + KV+ +D + + F LHG Sbjct: 9 VAVLLGGESNEREISLQSGQAVLTSLLQS--KVNAFGLDPKFEPLSKLAECSRVFICLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q+ L+ ++IPYT SG AS L MDK+ SK + + P+ + M Sbjct: 67 KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINT-PNFVRLEEGMTY 125 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + IK GSS+GI + K Q S++ + ++ E + G E Sbjct: 126 DEVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAF--ESAYKVDNTVIAEMMIFGEEF 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ + L + EI PK+DFY YE KY ++ + PAK+ + ++ +L A A Sbjct: 184 TLPILDSSPLSIVEIR-PKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNA 242 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G R DF+ + +VF +E+N PGMT S+ P A +G SF L+L +++ A Sbjct: 243 LGCSGWGRVDFMINN-QNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300 >gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413] gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 367 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 109/356 (30%), Positives = 169/356 (47%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKP----- 51 + +L GG S E EVS+SS +A ASAL AG S+ ++ G LA P Sbjct: 6 VGLLFGGRSGEHEVSISSARAIASAL-SAGENASKYEILPFYIHKDGRWLAGEAPQQVLK 64 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG GEDG +Q +L Sbjct: 65 SGAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLT 124 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126 L++ P+ SG+L SAL MDK+ K G+P V R + S + P Sbjct: 125 LMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIE 184 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI ++ Q + D L +++ N+ ++++E V E+ C V Sbjct: 185 ASLGYPCFVKPANLGSSVGISKVRSRQELE-DALDNAA-NYDRRIIVEAGVVAREVECAV 242 Query: 182 MGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + V EI SDFY YE KY++ + ++PA IP +I +++Q +A A A+ Sbjct: 243 LGNDQPQASTVGEITF-NSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAV 301 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DF + + +V EIN PG T S++P++ AY+G F EL+ +V+ Sbjct: 302 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQ 357 >gi|37544103|gb|AAQ93036.1| D-alanine-D-alanine ligase B [Rhizobium etli] Length = 136 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 71/105 (67%), Positives = 84/105 (80%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ +DV R V LA LKPD+ FN LHG Sbjct: 32 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 91 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+ Sbjct: 92 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGI 136 >gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] Length = 351 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 16/292 (5%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 G I R + K C AL I V ++ L++ H+ D AF +LHG GED Sbjct: 60 GDIEKIRNDTWHLDKNCYDALISGNTSEHGIVVFKNDELIIIHI--DAAFPILHGKNGED 117 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHL- 123 G +Q +LEL IP G+L+SAL MDK R+ ++V S G+ V S+L+N+ D S H+ Sbjct: 118 GTIQGLLELGGIPIIGCGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIE 177 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCG 180 + P +KPLK GSS GI ++ + DL ++ ++ + D++++E+ +DG E+ C Sbjct: 178 YLGFPIFVKPLKAGSSFGITKVEDKK----DLFKAVDKAFEYDDKVVLEENIDGFEVGCA 233 Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+ +V EI + K F+ Y KY+ S +PA+I + K ++ A ++ Sbjct: 234 VLGNEKPIIGEVDEIELSKG-FFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKI 292 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + C+ +R D +F R + + E+N PG T S FP M G F E++ Sbjct: 293 LDCKDFARID-MFITKDRDIVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIV 343 >gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 304 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 170/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 ++ I P V+KP GGSS+G+ ++ D++ + +L++ W+ +++IE+Y+ G E Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG ++ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLKVR 299 >gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] Length = 360 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 148/271 (54%), Gaps = 18/271 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 ID+ R + D F VLHG GEDG VQ +LEL +IPY G+LAS+L+MDK+ Sbjct: 83 IDIKRDCTFIPV----DAVFPVLHGPHGEDGTVQGLLELADIPYVGCGVLASSLAMDKVL 138 Query: 96 SKQVVSSCGVPVC--PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKK 146 SK+V G+ V S + F + + +S P +KP GSS+GI Sbjct: 139 SKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPANMGSSVGITKAHN 198 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYEL 204 + + + ++ ++L+E+++DG E+ C V+G+ + + + VP ++FY Y Sbjct: 199 RDELMEAIELAGKYDR--KILVEEFIDGHEIECAVLGNDYPEASTVGQIVPCNEFYDYNA 256 Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY S V+PA +P+D+ +EV+R+A A++A+ C G++R DFL ++ E+N Sbjct: 257 KYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLVKKSDNTIYLNEVN 316 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T +S++P++ + + +L+ ++E Sbjct: 317 TIPGFTKISMYPKLWDASSLPYDKLIDRLIE 347 >gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] Length = 383 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + Sbjct: 113 DVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWV 172 Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R +T D ++ P +KP GSS+GI + + + + + S++ Sbjct: 173 GFTRASWTQDDGRIVREIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDR 232 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ +D E+ G++G D V VPK +FY YE KY + +PA + Sbjct: 233 --RVIVEEAIDAREIEIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLS 290 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + K V+ A A QAI G++R DF + + +V EIN PG T S++P++ Sbjct: 291 PEERKAVESYAIRAFQAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEA 350 Query: 281 AGYSFRELLLWMVE 294 +G ++ +LL ++E Sbjct: 351 SGLAYDKLLDRLIE 364 >gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 313 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 18/300 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL DAG + DVD + L +PD+ + +LHG+ Sbjct: 7 VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120 GEDG ++ +LEL+ + +G S ++ K +K V++ GV P ++ + F Sbjct: 67 GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126 Query: 121 QHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 H + P V+KP GGS+LG+ ++ +++P ++ S +++GD LIEQ V Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMV--SCFSYGDVALIEQAV 184 Query: 173 DGIELTCGV--MGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+ V +GD + + + + D Y ++ +Y++ + + PA++P D Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLAAACA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH + R +SR+D + D V W LE+NV PGMT S+FP AA + EL Sbjct: 245 VAVRAHDVLRLRHLSRTDLVVD--GYGVAWFLEVNVAPGMTETSLFPLAAAASPTPLPEL 302 >gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 368 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 145/258 (56%), Gaps = 17/258 (6%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG FGEDG +Q + E++ IPY +G+LAS+L+MDK SK++ G+P Sbjct: 102 KIDVVFPVLHGPFGEDGTIQGLFEMMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAK 161 Query: 110 --SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + LV + + + ++ P +KP GSS+GI + + + + ++ + Sbjct: 162 YHAFLVKEYKENEKEVLDTIEEKFTYPVFVKPANMGSSVGITKVHNREKLEKAIELAAKY 221 Query: 161 NHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + ++++E+ ++G E+ C V+G+ ASL EI +P ++FY Y KY + S +P Sbjct: 222 DR--KIVVEEGINGREIECSVLGNDEPIASLP-AEI-IPSAEFYDYNDKYFAGTSKFEIP 277 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A +P D+ + ++ L+ ++ + C G+SR D + S ++ E+N PG T +S++P+ Sbjct: 278 ANLPEDVIEGIRSLSVKVYKLLDCSGLSRVDCFIERDSNRILLNEVNTMPGFTQISMYPK 337 Query: 277 MAAYAGYSFRELLLWMVE 294 M G + EL+ ++E Sbjct: 338 MWEATGIEYEELIDRLIE 355 >gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] Length = 300 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL+SGKA L+ + V +D + DLA LHG Sbjct: 4 IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG +QA+LE + I Y+ L S + MDK +K + GV + V+ Sbjct: 64 KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P IKP GGSS+ ++K + +++ ++ + D ++IE+Y+ GIE Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAVIE--AFKYDDIVMIEEYIKGIEH 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I +F+ YE KYS+ N ++ + K ++ + Sbjct: 182 TSFILNGEVFPTIRI-TSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG R+D++ +V+ LEIN PGMT S+ P+ A G + LL ++E A Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298 >gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] Length = 304 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I ++ Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W+ +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIIIK--DEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QVR 299 >gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] Length = 395 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 363 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 176/343 (51%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64 Query: 41 -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + G L+ L +P D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++ R D+ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V Sbjct: 185 NQGSSVGVSKVSDEAGFAGALALGFEFDH--KLLIEQGIVGREVECAVLGNFEPQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA +P+D+ +V+ +A A++ +GC G+SR DF F Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R++ E+N PG T +S++P++ +G ++ EL+ ++ Sbjct: 302 VTEARQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLI 344 >gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 395 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] Length = 356 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 107/351 (30%), Positives = 164/351 (46%), Gaps = 55/351 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGLVL 46 VL GG+S ER+VSL SG L + G K +DV D+ GL + Sbjct: 5 VLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGLEI 64 Query: 47 A-----------------------HLKP---------DLAFNVLHGNFGEDGLVQAILEL 74 A +L P D+ F LHG+ GE+G +QA ++ Sbjct: 65 AEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATFDI 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131 L I YT ALSMDK+ +KQ+ GVP +NR T D+ + P VIK Sbjct: 125 LGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLVIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ ++ + S NH D+++IE Y+ G E C ++ +L + E Sbjct: 185 PCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPLIE 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +PK ++YE KY + + P + LD ++QR A + + +R+DF+ Sbjct: 245 I-IPKDGIFNYENKYQDGGAQELCPP-VSLDDKTQAKIQRAGEKAFRVLHMDVYARADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D K + LE+N PGMTP S+ P+ A G + +L ++E++ R Sbjct: 303 VDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353 >gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] Length = 353 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 25/263 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q +L+L P+ SG+L SAL MDK+ K +S +P Sbjct: 96 DVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSGVLGSALGMDKIAMKIAFASANLP----- 150 Query: 112 LVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 V F+++ LI+P P IKP GSS+GI Q + L Sbjct: 151 QVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKPANLGSSVGITKAYNKQQLIEGL- 209 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTH 213 + + NH +++IE+ V G EL CGV+G + + + K SD+Y Y+ KYS ++S Sbjct: 210 -NIAANHDPRIVIEESVTGRELECGVLGKEKMIASTVGEVKHQSDWYDYQAKYSGVSSEV 268 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA I +I K++Q L+ LA +AI GI+R DF + + V EIN PG T S+ Sbjct: 269 LIPAPISEEISKKIQELSLLACKAISVEGIARVDFFYKEDTNHVLINEINTLPGFTMQSM 328 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P + +G + +L+ +VE A Sbjct: 329 YPMLWNQSGLNIEKLVAILVETA 351 >gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM 7109] gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 362 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 15/256 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + +LL Y +G+LASA MDK +K++ G+P P + Sbjct: 108 DVIFPVLHGANGEDGTIQGLFDLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEV 167 Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +++ T + H L+ P +KP +GGSS+GI + + +P + +++S H +++I Sbjct: 168 VLHGRTELTDHERELLGLPVFVKPARGGSSIGISKVDSWRDLPAAIEEAAS--HDPKVII 225 Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAV------PKSDFYSYELKYSSLNSTHVLPAKIP 220 E + G E+ CGV+ D +L + A+ + FY ++ KY + +PA + Sbjct: 226 EAMITGPEVECGVLEREDGTLVASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLD 285 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + + VQ+LA ++A+GC G++R DF EIN PG TP+S++P+M Sbjct: 286 EETTRRVQQLAIETYRALGCTGLARVDFFV--TDAGPVLNEINTMPGFTPISMYPQMFLA 343 Query: 281 AGYSFRELLLWMVEDA 296 G S+ +LL +V A Sbjct: 344 DGVSYADLLTTLVSGA 359 >gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] Length = 377 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/345 (30%), Positives = 168/345 (48%), Gaps = 57/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-----------------EDAGFKVSQI------- 36 + +L GG S E EVS++S KA A AL +D ++ +I Sbjct: 32 VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91 Query: 37 ------DVDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D SVGL P D+ F +LHG GEDG +Q +L L+++PY SG+L Sbjct: 92 GKPLSTESDDSVGLW--QFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVL 149 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPL 133 SA+ MDK+ K G+P P + + R + S + P P +KP Sbjct: 150 GSAVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPA 209 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDV 189 GSS+GI + + L ++S++ ++++E V E+ C V+G+ AS+ V Sbjct: 210 NLGSSVGIAKARTRSELETALDAAASYDR--RIIVEAGVSAREVECAVLGNDNPKASI-V 266 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI SDFY YE KY+ + ++PA IP I ++Q ++ A A+ G++R DF Sbjct: 267 GEITF-NSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFF 325 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +V EIN PG T S++P++ +G F +L+ +++ Sbjct: 326 YVEKTGEVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQ 370 >gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 375 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 139/256 (54%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LE+ +IPY +G+LASA MDK+ K++ + G+P C Sbjct: 104 DVVFPLLHGTFGEDGTIQGLLEIADIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFR 163 Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIP-LDLLQSSSW 160 NR F M+ + + P +KP GSS+GI K +D+ I +D ++ Sbjct: 164 YFNRAQWEKDASFFIMECEVALGYPCFVKPSNLGSSVGISKAKNRDELIAAIDF----AF 219 Query: 161 NHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 ++++E++VD E+ V+G D + V P ++FY Y+ KY ST +PA Sbjct: 220 RFDRRVIVEEFVDAREIEVSVLGNDDPKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPAN 279 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IP V+ +A A AI G+SR DF ++F E+N PG TP+S++P M Sbjct: 280 IPNKTADAVRDMALRAFLAIDGAGLSRVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMW 339 Query: 279 AYAGYSFRELLLWMVE 294 +G +++LL +++ Sbjct: 340 KESGLPYKDLLDKLID 355 >gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 360 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 141/257 (54%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F VLHG +GEDG +Q +LE+ IPY + + ASA +MDK +K++ ++ G+PV P + Sbjct: 99 DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYA 158 Query: 111 ILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +L + T+ Q + P +KP + GSS GI + LD +++ ++L+ Sbjct: 159 VLRSGMTLTEQDKQRLGLPVFVKPSRAGSSFGITRVT--DWADLDDAVANARKIDPKVLV 216 Query: 169 EQYVDGIELTCGVMGDASLDVTEIA-------VPKSDFYSYELKYSSLNST--HVLPAKI 219 E V G E+ CGV+ + V E + V DFY +E KY ++ + +PA + Sbjct: 217 ESAVIGREIECGVLEAEAGGVPEASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADL 276 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + ++VQ A A A+ C G++R+DF P V+ E+N PG TP S+FP M A Sbjct: 277 PERVTRQVQEYAVRAFTALDCAGLARADFFVTP-ELDVYLNEVNTMPGFTPTSMFPRMWA 335 Query: 280 YAGYSFRELLLWMVEDA 296 +G +++L+ ++ A Sbjct: 336 ASGLEYQKLVNRLIRTA 352 >gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bifidobacterium longum DJO10A] gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A] gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A] Length = 395 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%) Query: 28 DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+GF S + + D + VL L D VLHG +GEDG VQ +LE++ +PY G+ Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137 ASA MDK +K V+ + G+P P + V+ + +++ P +KP + GS Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220 Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S G+ ++K D+ D L +++ H ++L+EQ +DG E+ C V+ + D E Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280 Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P FY ++ KY +++HV +PA +P+ + ++V+ +A A +A+ G Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGVG 340 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SR D P V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK] gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 367 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 20/275 (7%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + + + G VLA D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK Sbjct: 91 VSLGEAAGEVLA--SADVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 148 Query: 96 SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K++++S G+PV +++ + ++ + + P +KP +GGSS+G+ + +P Sbjct: 149 TKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVFVKPSRGGSSIGVSRVTAWDELP 208 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYS 201 + + H +++IE V G EL CGV+ D L+ + EI V + FY Sbjct: 209 AAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHLEASTLGEIRVEGVRGREDGFYD 266 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +E KY + +PAK+ D+ + ++ L+ A AI C+G++R DF + E Sbjct: 267 FETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAIDCQGLARVDFFLTDDGPVIN--E 324 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P M A +G + LL MVE A Sbjct: 325 INTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 359 >gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 373 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 145/261 (55%), Gaps = 23/261 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LE+ + Y +G+LASA+SMDK K V+++ G+PV PS+ Sbjct: 108 DVVFPLLHGPWGEDGTIQGLLEMAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSV 167 Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + D+ I P +KP +GGSSLGI K + LD ++ H Sbjct: 168 TVTTREWARDAAGCRARADEIGYPLFVKPARGGSSLGI--SKVHDATELDGAIELAFEHD 225 Query: 164 DQLLIEQ-YVDGIELTCGVMGDASLDVT-EIAVPKS-------DFYSYELKYSSLNSTHV 214 ++L+E +D E+ CGV+ ++D T E +VP +FY + KY T + Sbjct: 226 PKVLVETAAIDAREVECGVL--QAVDGTPETSVPAEIRISGAHEFYDFAAKYLPEEHTEL 283 Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA +P + ++V+ L+ A +A+GC G++R DF P R V EIN PG TP S+ Sbjct: 284 DVPADLPEALVRQVRELSVRAFEAVGCEGLARVDFFVLPGERLVV-NEINTMPGFTPTSM 342 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 FP M A +G + L+ +++ Sbjct: 343 FPRMWAASGLDYPALVDRLIQ 363 >gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 304 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 141/254 (55%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F VLHG +GEDG +Q + E+ IPY G+L SA+ MDK K + + G+PV S+ Sbjct: 105 DLLFPVLHGPYGEDGTIQGLFEMANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSL 164 Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + F + + +S P +KP GSS+G+ + Q + + S ++ + Sbjct: 165 VYRHFQWKRDPEGLLNEVEQRLSYPCFVKPANLGSSVGVSNARNRQEMARAI--SEAFTY 222 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IEQ ++ E +C ++G+ V+++ +P +F YE KY + V+P+ +P Sbjct: 223 DRKVIIEQGLECREFSCAILGNEYPLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLP 282 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +E++ +A A+QA+ G+SR DF D + + E+N PG T +S++P++ A Sbjct: 283 AETARELREMALRAYQALDLSGLSRVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAA 342 Query: 281 AGYSFRELLLWMVE 294 +G S+ ELL ++E Sbjct: 343 SGLSYPELLDRLIE 356 >gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] Length = 373 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 19/266 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G V A + D+ F VLHG GEDG VQ +L+L + Y +G+LASA MDK +K++ Sbjct: 113 GEVFAQV--DVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLARE 170 Query: 103 CGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 G+PV +++ T + + + P +KP +GGSS+GI K D D + Sbjct: 171 AGIPVGEELILFQPRELTAEEKERLGLPVFVKPARGGSSIGI--SKVDSWEEFDAAIDLA 228 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN 210 +++ +++++E + G E+ CGV+ A + +VP FY ++ KY Sbjct: 229 FSNDNKVIVEAMIHGAEVECGVLQHADGSIVS-SVPAMLNGTEDGAEGFYGFDAKYVDST 287 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PA +P + KE+++LA A+GC GI+R DF EIN PG TP Sbjct: 288 VSATIPAPLPAETIKEIRQLAIRTFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTP 345 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S++P+M A G SF +L+ ++ A Sbjct: 346 ISMYPKMFAAEGVSFGDLVSALIARA 371 >gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237] gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237] Length = 326 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 34/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG + F + I + D Sbjct: 5 IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG+ GEDGL+Q+ ELL IP T SAL+ +K V+ Sbjct: 65 SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N +D + +++ P +K K GSS GI+ + K + + + Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ L VTEI V ++DF+ YE KY+ S Sbjct: 183 ENAYKEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEI-VSENDFFDYEAKYAG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++V LA A+ + +G SRS+F+F + + F LE+N PG+T S Sbjct: 241 EITPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 I P+ A AG S EL + +A ++ Sbjct: 299 ILPQQAKVAGISLPELFENAINEALTVK 326 >gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 358 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 167/341 (48%), Gaps = 54/341 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV---------------------------SQ 35 VL GG S EREVSLSSG A+AL + G +V S+ Sbjct: 22 VLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFSSE 81 Query: 36 I-----DVDR------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 I D+++ G++ A + D+ F LHG GEDG +QA+LE IP Sbjct: 82 IGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYGIP 141 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 +T S L+MDK SK + GV L + + P V+KPL GSS Sbjct: 142 HTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCGSS 199 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ ++++++ L ++++HG ++L+E+ + G E + GV+GD +L EI +P+S Sbjct: 200 VGVTIVEREEEWSAAL--EAAFSHGGRVLVEKKITGREFSVGVLGDRALPAIEI-IPESG 256 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY + + PA I D +EV + A H+ + SR DF+ D Sbjct: 257 FYDYQNKYQPGMTREICPAWI--DGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 ++ LE N PGMTP+S+ P+ A AG ++ EL +V + Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNNGK 354 >gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] Length = 339 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 170/335 (50%), Gaps = 51/335 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSV-------- 42 +L GG S E EVSL S ++ +AL F V+ + D R++ Sbjct: 7 LLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAVRG 66 Query: 43 GLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 G ++ H D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ +K Sbjct: 67 GDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 98 QVVSSCGVP-VCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQS 149 QV++S G+P V + V R + + P +KP GSS+GI + Sbjct: 127 QVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGPGE 186 Query: 150 I--PLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP------KSDF 199 + LDL +++ G ++++E EL G++G+ + IA P ++DF Sbjct: 187 LERALDL----AFSLGRRVILEAMTAHKPRELEVGILGNDA----PIASPVGELRFEADF 238 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY+ +T +PA +P +I + V+ LA A + + C G++R DF + + ++F Sbjct: 239 YDYETKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFL 298 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P++ AG S+ EL+ +VE Sbjct: 299 NEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVE 333 >gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 304 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 387 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 138/252 (54%), Gaps = 10/252 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D AF VLHG GEDG +Q + E+ IP G+L+SAL MDK R+ ++V + G+ V S Sbjct: 136 DAAFPVLHGRNGEDGTIQGLFEMAGIPVVGCGVLSSALCMDKDRAHKLVHTAGIAVPSSF 195 Query: 112 LVNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ + + I P +KP+K GSS GI + +P L ++ + ++ Sbjct: 196 VLGKSASVATALQQAEKIGYPLFVKPVKAGSSFGITKVSSSNELPAAL--ELAFEYDKRV 253 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++E+ + G E+ C ++GD L V E+ + F+++ KY+ S +PA+IP + Sbjct: 254 IVEECISGFEVGCAILGDEDLTVGEVDEIELSGGFFNFTEKYTLKTSAIHVPARIPQNTA 313 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +++++ A ++ + C+G +R D P S ++ + E+N PG T S +P M AG++ Sbjct: 314 EQIKQAAKTIYRTLDCQGFARVDLFLTP-SGEIVFNEVNTIPGFTTHSRYPNMMKAAGFT 372 Query: 285 FRELLLWMVEDA 296 F +++ ++E A Sbjct: 373 FEQIVSALIEQA 384 >gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 375 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 58/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPD---- 52 + ++ GG SSE EVSL + + A++ ++V+ Q+D G LA PD Sbjct: 8 LGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEA 67 Query: 53 -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75 + F V+HG FGEDG +Q +LEL Sbjct: 68 LRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDS-QHLISP 126 IPY +G++ASA+ MDK K V + G+P + + R MD + + Sbjct: 128 NIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGY 187 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + + L ++ ++ +L++E++V EL GV+G+ Sbjct: 188 PCFVKPANMGSSVGINKAKNREELKHALDVAAKFDR--RLIVEEFVQVRELEIGVLGNEE 245 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L + + + +FY YE KY + +PA +P + +++ +A A QA+ G+S Sbjct: 246 LMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLS 305 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R DF +D + K++ E+N PG TP S++P + AG + EL+ +V+ Sbjct: 306 RVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQ 355 >gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] Length = 304 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 163/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I ++ Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W+ +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIIIKDGIP---YVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETS 295 Query: 297 SCLR 300 +R Sbjct: 296 LQIR 299 >gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] Length = 315 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 162/299 (54%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AVL GG +EREVSL SG +AL+ G+ ID+ DR+ L D+AF Sbjct: 8 IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 LHG GEDG +QA+L+L+ PYT S LA AL+MDK+ +K++ G+P P + + Sbjct: 68 IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPT-PDYIADA 126 Query: 116 FTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + +S P ++KP + GS++GI K D + L + + ++L+E+++ Sbjct: 127 SDVSVECVERQLSYPVIVKPSREGSTIGI--SKADNTEQLMQALRDAREYDSEILVEEFI 184 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +G E T ++ D + + P D Y YE KY + ++ + LP+ + D ++ L Sbjct: 185 EGPEFTVSIINDEAYPAIGLK-PSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKAL 243 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + A+ A+GC+G R D + + LE+N PGMT S+ P AA+ G S+++L+ Sbjct: 244 SLDAYLAVGCKGWGRVDVMRRN-NGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLV 301 >gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 304 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 13/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY +++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIE 293 >gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] Length = 315 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-----LVLAHLKPDLAF 55 +AV+ GG SSER VSL SG A AL AG ID+ G + L D AF Sbjct: 16 VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 +LHG GEDG +Q L++L PYT SG+ ASA+ MDK+R+K + +P P ++ + Sbjct: 76 LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135 Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + L ++ ++ ++ E ++ Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAAEYDR--TVIAESWMS 193 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++ +L ++ + FY ++ KY + ++ + + + E++RLA Sbjct: 194 GGEYTVAILDGQALPPIQL-ITDHAFYDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+GCRG R D + D LE+N PGMT S+ P A AG SF EL++ ++ Sbjct: 253 AFSAVGCRGWGRVDAMRDECGNFQL-LEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311 Query: 294 EDA 296 A Sbjct: 312 RTA 314 >gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 104/342 (30%), Positives = 172/342 (50%), Gaps = 56/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR-SVG--- 43 +AVL GG S E EVS S + + ++ ++V + DVD+ + G Sbjct: 6 VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65 Query: 44 --LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 V A + P D+ F VLHG GEDG VQ ++ELLE+PY Sbjct: 66 KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130 +L+S+L MDK+ SK++ G+P +V R ++ I P + Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + +D L+ ++ + ++++E+ +D E+ C V+G+ + + + Sbjct: 186 KPANMGSSVGISKVHNEGEL-IDALKIAA-KYDRKIIVEEGIDAREIECSVLGNDNPEAS 243 Query: 191 ---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI VP +FY Y+ KY S +PA IP +E++ LA A+ A+ RG++R D Sbjct: 244 VAGEI-VPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 FL D + KV+ E+N PG T +S++P++ +G + EL+ Sbjct: 303 FLMDKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELI 344 >gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4] Length = 358 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + +L GG S+E +VSL + KA AL++ + + I V+ + L Sbjct: 5 ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64 Query: 45 VLAH------------LKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L P D+ +LHG GEDG VQ +LELL +PY +G+ Sbjct: 65 AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135 LASA MDK+ K + + G+P + + T +D + + P +KP Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192 GSS+GI + + L ++ ++ +++IEQ V E+ GV+G+ + + EI Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDR--KIIIEQGVKAREIELGVLGNDEPECSVPGEI 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +PK DFY Y+ KY ++ ++PA+IP IY++++R+A + +A+ C G+ R+DF Sbjct: 243 -LPKKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E+N PG TP S+FP + ++G + EL+ +V+ Sbjct: 302 -DGGIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQ 342 >gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 304 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 309 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 156/301 (51%), Gaps = 19/301 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V GG S EREVS SG+ A AL G V IDV V+ +PD F LHG Sbjct: 5 VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF---- 116 GEDG VQ +LE+L++PYT S LASAL +DK K V GVP P S F Sbjct: 65 GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124 Query: 117 ---TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 T+D+ V+KP + GSS G+ V+++ + +L + S++ D++L+E+YV Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYD--DRVLLERYV 182 Query: 173 DGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL V+G + L V EI + ++YS++ Y + + V A +P + V+ Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHY-EIGQSEVRLAGLPDAVDAHVR 241 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A A+ A GCR +R D + + + LEIN PG+T P A +AG +F +L Sbjct: 242 AIAAEAYSAAGCRDFARVDIRLE--GDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQL 299 Query: 289 L 289 + Sbjct: 300 I 300 >gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 304 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 367 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 136/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K+V S G+PV P Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYE 161 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 +V D+ + P IKP +GGSS+GI K D LD + Sbjct: 162 VVRPREWDNDPAAARKRIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLSGLDAAIEEA 219 Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + L+E + G E+ CGV+ AS+ V DFY +E KY ++T + Sbjct: 220 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SATGL 278 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EVQRLA A A+ C G+ R+DF V EIN PG TP+S++ Sbjct: 279 VPAPLTGEQTAEVQRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 337 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G S+ EL+ +++ A Sbjct: 338 PRMWQESGVSYPELVDRLIQAA 359 >gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] Length = 307 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 6/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ER+VSL SG A AL G ID+ +V + D AF VLHG Sbjct: 12 VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +QA+L+++ IPYT S +SAL+M+K+ SKQ+ GV I+++ T + Sbjct: 72 GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + ++KP GSS+G+ + + + ++ +L E+ + G E T Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAYAHAKKYDA--IVLAEKVLVGDEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + ++ + FY Y+ KY + ++ ++ P + L+ +EV LA A ++ Sbjct: 190 VAILNGQVLPIIKLETDRV-FYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 C G R D + D + LE+N PGMT S+ P A AGYSF L+ Sbjct: 249 QCEGWGRVDIMRDE-NGGFHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLV 298 >gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] Length = 354 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 105/351 (29%), Positives = 166/351 (47%), Gaps = 55/351 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGLVL 46 VL GG+S ER+VSL SG L + G K +DV D+ GL + Sbjct: 5 VLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGLEI 64 Query: 47 A-----------------------HLKP---------DLAFNVLHGNFGEDGLVQAILEL 74 A +L P D+ F LHG+ GE+G +QA ++ Sbjct: 65 ASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATFDV 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131 L I YT L A+SM+K+ +KQV VP + T ++ + P V+K Sbjct: 125 LGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLG+ + ++ + +S +H D+++IE ++ G E CG++ +L + E Sbjct: 185 PCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPLVE 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +P+ + +SYE KY +T + P + LD K++QR A A+ +R+DF+ Sbjct: 245 I-IPRDEVFSYENKYQDGGATEICPP-VSLDAKTMKKIQRAGEKAFDALRMDVYARADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + + LE+N PGMTP S+ P A AG + EL ++E++ +R Sbjct: 303 VDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353 >gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977] gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977] Length = 323 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 167/316 (52%), Gaps = 28/316 (8%) Query: 3 VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDR-SVGLVLAHLKP 51 ++ GG S E EVSL S + AL +D + + ++ +D G P Sbjct: 8 LVAGGRSGEHEVSLQSAQGVLEALPFDADPAVIAKDGRWLLGRLALDAIEAGRAPRGDHP 67 Query: 52 ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D+ F +LHG +GEDG +Q E+L +PY + + ASA+ MDK SK++++ Sbjct: 68 FPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLSKRILA 127 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 G+PV P ++ + L PP+ +KP + GSS+GI +++ + L ++ Sbjct: 128 QAGLPVVPWEVLRKGEPVFVGL-EPPFFVKPARAGSSVGIAKVRRYAELRPAL--DEAFR 184 Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218 H D+++IEQ V G+ EL ++G+ + + + + ++FY Y KY++ + +PA Sbjct: 185 HDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAELDIPAA 244 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + VQ +A A++ +G RG++R DF F S +++ E+N PG TP S++P++ Sbjct: 245 LDPGTQETVQEMAVRAYRVLGVRGMARVDF-FLAESGEIYLNELNTIPGFTPFSMYPKLW 303 Query: 279 AYAGYSFRELLLWMVE 294 +G + ELL +VE Sbjct: 304 QASGLPYPELLTRLVE 319 >gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] Length = 304 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 304 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 304 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIERYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 390 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 139/253 (54%), Gaps = 13/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +L++ +PY SG+ ASA +MDK K+++++ G+PV P Sbjct: 131 DVVFPLLHGPFGEDGTIQGLLDMSGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYT 190 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +V + + L+ P +KP +GGSS+GI + D LD ++ + ++L+ Sbjct: 191 VVRPGQTLSETERELLGLPVFVKPARGGSSIGI--SRVDAWADLDTAFKAARSSDPKVLV 248 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221 E + G E+ CGV+ E +VP + FY +E KY S + +PA++P Sbjct: 249 EAAIVGREIECGVLDRLDGSGPEASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPH 308 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ + V+ A A++A+ C G++R D P + + E+N PG T S+FP++ A + Sbjct: 309 ELTERVRATATAAYEALDCAGLARVDMFVTP-AGDIVLNEVNTMPGFTSTSMFPQVWAAS 367 Query: 282 GYSFRELLLWMVE 294 G F L +V+ Sbjct: 368 GLDFAALTDRLVQ 380 >gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/337 (31%), Positives = 158/337 (46%), Gaps = 46/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S ER+VSL SG A++L +G V+ DV D + Sbjct: 7 ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66 Query: 46 LAHLKPDL--------------------------AFNVLHGNFGEDGLVQAILELLEIPY 79 + PDL F LHG GEDG +QA L + IPY Sbjct: 67 VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T S A ++MDK SK + + G+P L+ + DS I P V+KP GSS+ Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKK--GDSTDGIPLPCVVKPCSCGSSV 184 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G+ ++ +++ L +++ + +++L E + G E + GV+ +L EI PK F Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAIEIR-PKDGF 241 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY S + + PA +P + LA H+A+G SR DF+ + + K Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N PGMTP+S+ P+ AA AG + L L + + A Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379] gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 136/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K+V S G+PV P Sbjct: 126 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYE 185 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 +V D+ + P IKP +GGSS+GI K D LD + Sbjct: 186 VVRPREWDNDPAAARKRIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLSGLDAAIEEA 243 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + L+E + G E+ CGV+ AS+ V DFY +E KY ++T + Sbjct: 244 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SATGL 302 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EVQRLA A A+ C G+ R+DF V EIN PG TP+S++ Sbjct: 303 VPAPLTGEQTAEVQRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 361 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G S+ EL+ +++ A Sbjct: 362 PRMWQESGVSYPELVDRLIQAA 383 >gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 337 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 35/315 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VS+ S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRN-D 63 Query: 44 LVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 +H +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q Sbjct: 64 FSFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQY 123 Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + GV V S+LVN+ D I P IKP GSS G+ +K + I L Sbjct: 124 LKGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL- 182 Query: 156 QSSSWNHGDQLLIEQYVDGIELT--CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D ++IE ++DGIEL C D S +TE+ V K++F+ Y KY+ Sbjct: 183 -EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYNG-EV 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT Sbjct: 240 TEITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTAT 298 Query: 272 SIFPEMAAYAGYSFR 286 S P+ + + Y ++ Sbjct: 299 SFIPQPGSCSRYRYQ 313 >gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] Length = 376 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 15/257 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG +Q + EL IPY G+LASA+ MDK+ +K + G+P Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167 Query: 110 SILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + R + + S P +KP GSS+G+ + L+ ++ + Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227 Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE++++G E+ C V+G+ + V EI +P ++FY Y+ KY S +PA Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDDPVASTVGEI-IPGNEFYDYKAKYIENTSKIKIPA 284 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + ++++ A A +A+ C G++R DF + KV+ EIN PG T +S++P + Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344 Query: 278 AAYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 345 WEESGISYPELIEKLID 361 >gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] Length = 305 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 154/299 (51%), Gaps = 11/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+ L + V I ++ + + D F LHG Sbjct: 6 IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +QAILE ++IPYT G+LAS+L MDK +K ++ S GV I V Sbjct: 66 KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + KP GGSS+G+ IK +Q L + + +++IE+ + G+E Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKDIFTIDK--EVMIEEVLRGVE 183 Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ ++ D + T PK+ F+ Y KY + + + ++ E+ L A+ Sbjct: 184 ISVPII-DGKVYPTLCIEPKAGTFFDYASKYEVGGADEYV-VEFEKELQDEINELTKTAY 241 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G +R DF+ K + +EIN PGMT S+ P+ + G S+ ELL ++E Sbjct: 242 HAVKCEGYARIDFMLK--DNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298 >gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] Length = 376 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 142/257 (55%), Gaps = 15/257 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG +Q + EL IPY G+LASA+ MDK+ +K + G+P Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167 Query: 110 SILVNRFTM--DSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + R + D + ++ S P +KP GSS+G+ + L+ ++ + Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227 Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE++++G E+ C V+G+ + V EI +P ++FY Y+ KY S +PA Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDAPVASTVGEI-IPGNEFYDYKAKYIDNTSKIKIPA 284 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + ++++ A A +A+ C G++R DF + KV+ EIN PG T +S++P + Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344 Query: 278 AAYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 345 WEESGISYPELIEKLID 361 >gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 368 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 142/259 (54%), Gaps = 20/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ +L+L+++P+ SG+L SA+ MDK+ K V + G+P Sbjct: 104 DVWFPVLHGPNGEDGTVQGLLKLMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYT 163 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V R + S I P P +KP GSS+GI ++ + L ++S Sbjct: 164 AVTRSQVWSNPCIFPKLCDQIEENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAAS 223 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ ++++E V EL C V+G+ AS+ V EI KSDFY YE KY+ + + Sbjct: 224 YDR--RIIVEAGVVARELECAVLGNDRPQASI-VGEITY-KSDFYDYETKYAHGQADLFI 279 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PAK+ I ++Q +A A A+ C G++R DF + + +V EIN PG T S++P Sbjct: 280 PAKVSDAIASQIQSMAIEAFLALDCAGLARVDFFYVESTGQVLINEINTLPGFTATSMYP 339 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ A +G SF EL+ +++ Sbjct: 340 QLWAASGISFAELVDRLIQ 358 >gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313] Length = 376 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 142/257 (55%), Gaps = 15/257 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG +Q + EL IPY G+LASA+ MDK+ +K + G+P Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167 Query: 110 SILVNRFTM--DSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + R + D + ++ S P +KP GSS+G+ + L+ ++ + Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227 Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE++++G E+ C V+G+ + V EI +P ++FY Y+ KY S +PA Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDDPVASTVGEI-IPGNEFYDYKAKYIDNTSKIKIPA 284 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + ++++ A A +A+ C G++R DF + KV+ EIN PG T +S++P + Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344 Query: 278 AAYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 345 WEESGISYPELIEKLID 361 >gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055] gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum] gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94] gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] Length = 304 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +EIN PGMT S+ P+ A G + +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLRVR 306 >gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2] Length = 322 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 152/296 (51%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A +AL D L K D +LHG Sbjct: 18 VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+LL+IPYT + +L SAL+MDK+ +KQV S G+P + ++ ++ Sbjct: 78 RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + L+ ++N+ +Q+L+EQY+ G Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQ--LENAIQDAFNYDNQVLLEQYIKG 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + FY Y KY + + P+ + + + +L+ A Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +I G R D + D + LE N PGMT S+ P+ A AG SF EL+L Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVL 309 >gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286] Length = 327 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 162/327 (49%), Gaps = 41/327 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE VS S S L+ + + ++ + R V A Sbjct: 5 IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64 Query: 48 --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 ++K D AF ++HG GEDG +Q ++L IPY+ G++AS+L+M+K Sbjct: 65 FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ V S+ +N+ T S I+ P +KP GGSS +K ++ L Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKS-----IEQL 179 Query: 156 QSS---SWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSS 208 Q + ++ +++IE ++ G E+TCG + +TE+ P ++F++YE KY Sbjct: 180 QKAIDIAFGETPEVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTP-NEFFNYEAKYEG 238 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + PA+IP ++ E+QRL + +G +GI R DF+ + LE+N PGM Sbjct: 239 -QVEEITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFIIS--DNMPYLLEVNTVPGM 295 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ A AG + ++L ++E+ Sbjct: 296 TQTSFIPQQVAAAGLNITDVLTEIIEN 322 >gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 304 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A G + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis C231] gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis 1002] gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis I19] Length = 363 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 140/261 (53%), Gaps = 17/261 (6%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 + + D+ F LHG FGEDG +Q + EL IPY +G+L+SA MDK +K+++++ G+PV Sbjct: 105 YAQADVIFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 164 Query: 108 CPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHG 163 +++ T + ++ P +KP +GGSS+GI VI+ D D + + H Sbjct: 165 GKEVILRGDETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWDD---FDAALTLAREHD 221 Query: 164 DQLLIEQYVDGIELTCGVM--GDASL------DVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++++E + G+E+ CGV+ D SL + ++ + FY ++ KY T + Sbjct: 222 TKVIVEAEIKGVEVECGVLERADGSLIASVPAQLEDVDEGEEGFYGFDTKYLDNIVTATI 281 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA +Q L+ A QA+ CRG+SR DF + E+N PG TP+S++P Sbjct: 282 PAPFDQQTIALIQSLSLEAFQALNCRGLSRVDFFV--TDQGPVLNEVNTMPGFTPISMYP 339 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ G + ELL +++ A Sbjct: 340 QVFEATGIGYAELLSHLIDQA 360 >gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 311 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 M V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 MGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I L W+ +++IE+Y+ G E Sbjct: 130 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIST-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A G + +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLRVR 306 >gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501] gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501] Length = 329 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/324 (32%), Positives = 162/324 (50%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE--------------------DAGFKVSQIDVDR 40 +AV+MGG SSE E+SL SG+ L+ D+G + D Sbjct: 7 IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV L L+ D FN +HG GE+GL+QA EL+ +P T G +A++ +K ++ Sbjct: 67 SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GVP S ++R +Q I P +K + GSS G+ +++ ++ L Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVR--EASGLQAAV 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE + G E++ GV+ L +TEI V ++DF+ Y+ KY S Sbjct: 185 ENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEI-VSENDFFDYQAKYEG-KSR 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP D ++V+ LA + + G SRS+F+ + + LE+N PG+T S Sbjct: 243 EITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEAS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S EL + DA Sbjct: 301 ILPQQAACAGISLTELFGSAIADA 324 >gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A G + +LL ++E Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301 Query: 296 ASCLR 300 + +R Sbjct: 302 SLRVR 306 >gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 315 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG AL G +V+ D D + L +PD A LHG+ Sbjct: 7 VLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHGSR 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFT-MD 119 GE+G +Q+ILE++ IPY + LS +K +K ++ G P S+ + F + Sbjct: 67 GENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRDLG 126 Query: 120 SQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +Q L + P ++KP GGS+LG ++ +P L+ ++ +G+ ++EQ++ Sbjct: 127 AQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAALV--GAFAYGEIAVVEQFI 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G EL V+ G +L EIA P S + YE +Y++ +T+ PA++ + Sbjct: 185 EGTELAITVVDRRDGPQALPAVEIA-PHSGVFDYESRYTAGLTTYYTPARLDEAVATAAA 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+ +G R +SR+D + V +LE+NV PG+T S+ P AG S EL Sbjct: 244 ELAIGAHRTLGLRDVSRTDAIAGA-DGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLGEL 302 Query: 289 LLWMVEDA 296 +VE A Sbjct: 303 YAGLVERA 310 >gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 379 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 27/293 (9%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 E G +S DR V L P D+ F +LHG +GEDG +Q +LEL +PY Sbjct: 83 ETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGVPYV 142 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PY 128 +G+LASA+ DK K+V S G+PV P ++ + + P Sbjct: 143 GAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIVEFAAEHGWPL 202 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----- 183 +KP +GGSS+GI K D LD + H ++L+E + G E+ CGV+ Sbjct: 203 FVKPARGGSSMGI--TKVDDLSGLDEAIEEARRHDPKILVESLLRGREIECGVLEFEDGP 260 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 AS+ V DFY +E KY +++ ++PA I + E+QRLA A++A+ C G+ Sbjct: 261 RASVPAEIPPVTNHDFYDFEAKYID-SASGIVPAPIGDEATAEIQRLAVAAYEAVSCEGL 319 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R+DF V EIN PG TP+S++P M +G S+ EL+ +++ A Sbjct: 320 VRADFFLTEDGDFVI-NEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQAA 371 >gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] Length = 348 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 175/341 (51%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF------------- 31 + V+ GG SSE EVS+ S K +AL + G+ Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67 Query: 32 -KVSQIDVDRSVGLV-LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K I DR V L L++++ D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137 L MDK+ K V S +P P + +N+ + + +I+ P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196 S+GI + + ++ ++ +++++E+ ++G EL CGV+G + + + + K Sbjct: 188 SVGITKAYSKEEFITGIEFAAKYD--ERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245 Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346 >gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b] gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b] Length = 308 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 16/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V I D ++ V + L D + L Sbjct: 6 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRF 116 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + S+ V Sbjct: 66 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE- 124 Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171 T+D + + + V+KP GGSS+G+ ++ + + L+L+ + + LIE+ Sbjct: 125 TVDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELV----FGMDKEALIEEV 180 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G+E++ V+ I D++ YE KY+ + + + P ++ E+ + A Sbjct: 181 LHGVEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFA 239 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L Sbjct: 240 KDSYYGLKCEGFARIDFMVVN-EETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDL 298 Query: 292 MVEDA 296 ++E + Sbjct: 299 LIESS 303 >gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97] gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis AF2122/97] Length = 370 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 108 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 167 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 168 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 225 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 226 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 285 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ + + +++LA A AI CRG++R DF + EIN PG T +S++P M Sbjct: 286 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 343 Query: 278 AAYAGYSFRELLLWMVEDA 296 A +G + LL M+E A Sbjct: 344 WAASGVDYPTLLATMIETA 362 >gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 351 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 160/336 (47%), Gaps = 46/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVG--- 43 V+ GG S E EVSL+S ++ L AG +V + + R + G Sbjct: 6 VVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGGNA 65 Query: 44 -------LVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + AH P D+ F VLHG +GEDG +Q +LEL +IPY +G+LASA+ Sbjct: 66 GSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASAVG 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGI 141 MDK+ K+V + G+P + + R + P +KP GSS+GI Sbjct: 126 MDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSVGI 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD 198 + + L ++ ++++E VD E+ V+G+ + +V+ EI + K D Sbjct: 186 S--RAAEPGELAAALDAAAALDRRIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRKGD 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY YE KYS PA +P + E++R+A A +AI G++R DF + + +V Sbjct: 244 FYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGRVL 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG T S++ + +G + LL ++E Sbjct: 304 LNEINTIPGFTATSVYSRLWEASGLPYERLLERLIE 339 >gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 361 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 143/251 (56%), Gaps = 16/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ +LELLE+PY +L+S+L MDK+ SK++ G+P Sbjct: 96 DVVFPVLHGPNGEDGTVQGLLELLEMPYVGPNVLSSSLCMDKVFSKRIFLEAGIPTPKFT 155 Query: 112 LVNRFTMDSQH----------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +V R +++ I P +KP GSS+GI + + + +D L+ +S Sbjct: 156 VVYRKELNNVDNYEEIRRRVSEIGYPCFVKPANMGSSVGITKVHNENEL-MDGLKLAS-K 213 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +++IE+ +D E+ C V+G+ + + + EI VP +FY Y+ KY S +PA Sbjct: 214 YDRKIIIEEGIDAREIECSVLGNDNPEASIAGEI-VPAHEFYDYDAKYFDEASKLFIPAP 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IP +E++ LA A+ A+ RG++R DFL D + KV+ E+N PG T +S++P++ Sbjct: 273 IPDVKMEEIRELAIKAYIALDVRGMARVDFLMDKNTGKVYLNELNTIPGFTKISMYPKLW 332 Query: 279 AYAGYSFRELL 289 +G + +L+ Sbjct: 333 EASGKPYSKLI 343 >gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 94_M4241A] gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92] gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054] gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85] gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503] gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17] gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46] gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] Length = 358 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 96 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ + + +++LA A AI CRG++R DF + EIN PG T +S++P M Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 331 Query: 278 AAYAGYSFRELLLWMVEDA 296 A +G + LL M+E A Sbjct: 332 WAASGVDYPTLLATMIETA 350 >gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271] gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271] Length = 360 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 138/249 (55%), Gaps = 13/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+A ++HG+ GEDG +Q +L++ +PYT G+ ASA++MDK +K G+ + P Sbjct: 101 DVALPIIHGSTGEDGKIQGLLDMFSVPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYT 160 Query: 112 LVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R+ D Q ++S P+ +KP GSS+GI + + + + L ++ Sbjct: 161 TIRKLRYQQDPQQVVSVILEEFTLPFFVKPASQGSSIGITKVHRPEELAAAL--EKAFMV 218 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++LIE+ ++G E+ V+G+ S V P DFY + KY + ++ +PA++P Sbjct: 219 DTKVLIEKTIEGREIEVAVLGNDSPVASVPGEVEPGGDFYDFTDKYINGKASLHIPARLP 278 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++V A A++A+ CRG+SR DF + + K+ EIN PG T +S++P M Sbjct: 279 EEVLQKVSTEALKAYRALECRGMSRVDFFIEHATGKIILNEINTVPGFTGISMYPMMMDA 338 Query: 281 AGYSFRELL 289 +G F +L+ Sbjct: 339 SGIDFSQLI 347 >gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 383 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + Sbjct: 113 DVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWV 172 Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R + D ++ P +KP GSS+GI + + + + + S++ Sbjct: 173 GFTRASWAQDDGRIVREIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDR 232 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ +D E+ G++G D V VPK +FY YE KY + +PA + Sbjct: 233 --RVIVEEAIDAREIEIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLS 290 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + K V+ A A QAI G++R DF + + +V EIN PG T S++P++ Sbjct: 291 PEERKAVESYAIRAFQAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEA 350 Query: 281 AGYSFRELLLWMVE 294 +G ++ +LL ++E Sbjct: 351 SGLAYDKLLDRLIE 364 >gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] Length = 375 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 142/255 (55%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG VQ +LEL ++PY +G+L SA+SMDK+ +KQ+ G+PV P + Sbjct: 109 DVVFPVLHGPYGEDGTVQGLLELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWL 168 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R + + + P +KP GSS+G+ + +P + +++ ++ Sbjct: 169 WVTRRQWERDPEGVAARVERELGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAARYDR 228 Query: 163 GDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L++E+ +D EL V+G+ + V EI P ++FY Y+ KY S ++PA I Sbjct: 229 --KLVVERGIDARELEVSVLGNDEPITSVVGEIR-PVNEFYDYQAKYVDEGSELLVPAPI 285 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + V+ +A A + + G++R DF + + ++ EIN PG T +S++P + Sbjct: 286 TQEQSDTVREMAVRAFKVVDAAGMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWE 345 Query: 280 YAGYSFRELLLWMVE 294 +G SFREL+ ++E Sbjct: 346 ASGLSFRELVSRLIE 360 >gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 322 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42 +A++ GG SSE VSL S + S ++ + + ++ +DR+ Sbjct: 5 IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 G + K D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + F + Q +IS P IKP GGSS G+ +K ++ I + Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE Y+ G E+TCG +V TE+ V ++F+ Y+ KY+ Sbjct: 183 EKAFHESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEV-VTDNEFFDYDAKYNG-QVQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D + V+ L + +GC GI R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 355 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 169/339 (49%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++M G+SSE+EVSL SG+ S ++ + I +D L LK Sbjct: 11 VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70 Query: 51 -------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 DL F LHG +GEDG +Q +LELL+IPYT SG+LASAL M Sbjct: 71 EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130 Query: 92 DKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKGGSSLG 140 DK+ S++V+ G+ V ++ V R F Q I P V+KP + G S G Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQE-IGFPCVVKPSREGCSTG 189 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKS 197 + + + L + W+ L+E+++DG+E+TCG++G +L +E + S Sbjct: 190 VKKVMSRAGLSDALNGAFLWDC--TALVEEFIDGMEVTCGILGGNPPTALTPSE-TIATS 246 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 D S E K+ + PA++P + ++Q +A A +A+ +G +R D +F + +V Sbjct: 247 DVLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARID-MFVTSAGRV 305 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N QPGMTP ++ AA +G + L+ ++E A Sbjct: 306 LVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1] gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1] Length = 279 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG GEDG VQ +LELL +PY +G+LASA MDK+ K + + G+P + Sbjct: 13 DVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNYV 72 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + T ++ + + P +KP GSS+GI + + + L ++ ++ Sbjct: 73 WYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFDR 132 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IEQ V E+ GV+G+ + V +PK DFY Y+ KY ++ ++PA+IP Sbjct: 133 --KIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEIP 190 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+Y++++R+A + +A+ C G+ R+DF ++ E+N PG TP S+FP + + Sbjct: 191 ADVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWKH 249 Query: 281 AGYSFRELLLWMVE 294 +G + EL+ +V+ Sbjct: 250 SGVEYPELIERLVK 263 >gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] Length = 350 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 165/343 (48%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS--------QIDVDR--------SVGLVL 46 VL GG+S+ER+VSLSSG L++ G V + D D+ + GL + Sbjct: 5 VLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGLEI 64 Query: 47 AH----LKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74 A +PDL F LHG+ GE+G +QA ++ Sbjct: 65 AEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATFDI 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131 L I YT L SAL+MDK +KQ+ GVP + + D+ + +S P V+K Sbjct: 125 LGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ + + + + S+ + D+++IE Y+ G E G++ +L V E Sbjct: 185 PCSGGSSIGVYIPQTEAEYKTAV--EESFKYEDEIIIEPYIKGREFAVGIIDGKALPVIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PKS+F+ Y KY + + + PA I I K +Q A A+ SR+DFL Sbjct: 243 I-IPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFLLT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ LE+N PGMT S+ P+ A AG S+ +L +++ Sbjct: 302 E-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQ 343 >gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] Length = 345 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 162/339 (47%), Gaps = 50/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDR--------------SV 42 + ++ GG S E +VS+ S A L ++V + +DR S Sbjct: 9 VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68 Query: 43 GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 G LA L+ ++ + VLHG GEDG +Q + L++ P+ SG+L SA Sbjct: 69 GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 + MDK+ K S+ G+P P +L + +SQ L + P IKP GSS+G Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188 Query: 141 I--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 I + + LDL S H +LL+E+ + EL C V+G L + E++ Sbjct: 189 ISKATNRSELQAGLDLAAS----HDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSF- 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y YE KYSS S+ +PA +P I Q LA A QA+G G+SR DF ++ S Sbjct: 244 DADWYDYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG T S++P + +G EL+ ++E Sbjct: 304 NLLINEINTLPGFTSQSMYPMLWKASGVPLEELVHQLLE 342 >gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S ++ A+ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName: Full=VanC ligase gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] Length = 344 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 5 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 65 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 301 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 332 >gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551] gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11] gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A] gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210] gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207] gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506] gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN V2475] gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11] gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CDC1551A] gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148] gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 4207] Length = 373 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ + + +++LA A AI CRG++R DF + EIN PG T +S++P M Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 346 Query: 278 AAYAGYSFRELLLWMVEDA 296 A +G + LL M+E A Sbjct: 347 WAASGVDYPTLLATMIETA 365 >gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum SS14] gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum SS14] gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 396 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 20/290 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAIL 72 L +G S ED +V + + G + P D+ F VLHG++GEDG VQ +L Sbjct: 57 LCTGTVALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLL 116 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP---- 126 E+L++PY G+ ASAL+MDK+++K + + G+PV P + + + M Q ++ Sbjct: 117 EMLQVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETR 176 Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P +KP + GSS+G ++ + + + W+ + +L+E+YV E+ C + G Sbjct: 177 LGYPLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWD--EVVLVERYVRAREIECALSG 234 Query: 184 DASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDI--YKEVQRLAFLAHQAIG 239 + V + + FY YE KY+ + VL PL+ Y+++ LA A++A+G Sbjct: 235 NGPYTVHGAGEVIAQGAFYDYEEKYADASVARVL-VTAPLETAQYEQITTLALRAYEALG 293 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G++R DF F + +V+ E+N PG T +S+FP++ AG + ++L+ Sbjct: 294 LTGLARVDF-FLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLM 342 >gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS] gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS] Length = 364 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 161/340 (47%), Gaps = 57/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A+ GG S+E E+S+ S ++ A+ ++ +++S + +DR Sbjct: 6 VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65 Query: 41 --------SVGLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 S G L L D+AF LHG++GEDG +Q L+ Sbjct: 66 LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127 IPYT G+ ASAL+MDK+ +K + G+ V + + + L P Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI ++ + + L + + + L+E + G E+ V+G++ Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENACGLDS--KALVEAAISGREIEVAVLGNSDP 243 Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +E +P SDFYSYE KY + V+PA +P + +EV++ A +A+GC G++R Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 DF + + +V EIN PG T +S++P M A +G F Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343 >gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] Length = 315 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 165/310 (53%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G VQ++L++ IPY + A + DK +K ++ G+ +++ T Sbjct: 66 GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q ++ P ++KP +GGS+LG V++ +P ++ + S+ GD +L+E+ Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALSY--GDTVLVEK 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 Y++G E+ GV+ G +L +I + Y Y +Y++ +T+ PA++ + Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIEA-TNGVYDYTARYTAGLTTYRTPAELSPETAAA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 LA AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S Sbjct: 243 AGDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLG 301 Query: 287 ELLLWMVEDA 296 ++ +VE A Sbjct: 302 DVFATLVERA 311 >gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum] gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum] Length = 343 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] Length = 324 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 168/327 (51%), Gaps = 44/327 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + ++ V+AH Sbjct: 5 IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +K D FN +HG GE+GL+QA LELL IP T + SAL+ +K V+ Sbjct: 65 TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL---------KGGSSLGIIVIKKDQSIP 151 G+ + +N+ + I+P +IK + + GSS GI +K Q Sbjct: 125 KPYGIKSAKNYFLNK-----EDAINPDEIIKKVGLPCFVKANRAGSSFGITKVK--QKNE 177 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYS 207 L +++ D+ +IE ++DG E++ GV+ +L VTEI V +++F+ YE KY Sbjct: 178 LYRAAQNAFQEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEI-VSENEFFDYEAKYL 236 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 S + PA+I K+VQ +A L ++ + +G +RS+F+F + + ++E+N PG Sbjct: 237 G-KSQEITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIFH--NGEPHFIEMNTTPG 293 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ SI P+ AA AG S ++L +E Sbjct: 294 LSQASILPQQAAKAGISLQDLYGSAIE 320 >gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 43/325 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 ++VL GG S ER+VS++S AL G +V +D Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62 Query: 43 --------------GLVL---AHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 G VL A L+ DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV P L++ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGV-RTPDWLIDPEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + +P L ++ HG +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAADLPAALELAA--RHG-TVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEIN 263 KY + PA +P ++ +E + A AH+ + G SRSDF D + W +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLD--DAGILWIIEAN 296 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288 PG+T S+ P+ AA G + EL Sbjct: 297 SLPGLTATSLLPQSAAAVGIGYAEL 321 >gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] Length = 368 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 20/272 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D+ G LA + D+ F VLHG +GEDG +Q +LEL IPY G+LASA MDK +K+ Sbjct: 95 DKQAGQALASV--DVVFPVLHGAYGEDGTIQGLLELAGIPYVGPGVLASAAGMDKEFTKK 152 Query: 99 VVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++++ G+PV +++ + T + + + P +KP +GGSS+GI + D S D Sbjct: 153 LLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVFVKPARGGSSIGITRV-ADWS-QFDA 210 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYEL 204 + + +H ++++E + G E+ CGV+ GD V EI +P +D FY ++ Sbjct: 211 AVAVARSHDPKVIVESAIVGREVECGVLEFPDGDVRASVVAEIRMPDTDGDESAFYDFDT 270 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAK+ D+ ++++ LA A +A+ C+G++R DF + EIN Sbjct: 271 KYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALDCQGLARVDFFV--TADGPVINEINT 328 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P M AG + L+ +V+ A Sbjct: 329 MPGFTSISMYPRMWQAAGVEYETLVSTLVDTA 360 >gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 167/303 (55%), Gaps = 23/303 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ P + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQ-- 124 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + H++S P VIKP GGS+LGI + +++ ++ ++ +G +L++EQ Sbjct: 125 LGASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQ 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +DG ++ V+ G +L E++ + Y Y+ +Y++ + + +PA++ ++ + Sbjct: 183 RIDGRDVAVSVVDLWDGPVALPPVEVSTDRG-RYDYDARYTTDETEYFVPARLSDELLAD 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSF 285 +Q A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A A SF Sbjct: 242 LQAAAVEAHTTLGLRDLSRMDFVVDD-EGTCWFIDANVAPGMTDTSLLPQAADALEDSSF 300 Query: 286 REL 288 +L Sbjct: 301 AQL 303 >gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 304 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + P V+KP GGSS+G+ ++ D++ + +L++ W+ +++IE+Y+ G E Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGKQLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG ++ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S] gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S] Length = 368 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 20/272 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D+ G LA + D+ F VLHG +GEDG +Q +LEL IPY G+LASA MDK +K+ Sbjct: 95 DKQAGQALASV--DVVFPVLHGAYGEDGTIQGLLELAGIPYVGPGVLASAAGMDKEFTKK 152 Query: 99 VVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++++ G+PV +++ + T + + + P +KP +GGSS+GI + D S D Sbjct: 153 LLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVFVKPARGGSSIGITRV-ADWS-QFDA 210 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYEL 204 + + +H ++++E + G E+ CGV+ GD V EI +P +D FY ++ Sbjct: 211 AVAVARSHDPKVIVESAIVGREVECGVLEFPDGDVRASVVAEIRMPDTDGDESAFYDFDT 270 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAK+ D+ ++++ LA A +A+ C+G++R DF + EIN Sbjct: 271 KYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALDCQGLARVDFFV--TADGPVINEINT 328 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P M AG + L+ +V+ A Sbjct: 329 MPGFTSISMYPRMWQAAGVEYETLVSTLVDTA 360 >gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1] gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 343 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 146/259 (56%), Gaps = 20/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +LEL++ PY SG+ ASA+ MDK+ K V + G+P P + Sbjct: 82 DVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYV 141 Query: 112 LVNRFTMDS-----QHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + R + S HL + P +KP GSS+GI K Q + L ++ Sbjct: 142 ALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAE 201 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + ++++E V EL C V+G+ AS+ V EI S+FY YE KY+ + + Sbjct: 202 LDR--RIIVEAGVVARELECAVLGNDKPQASV-VGEITY-SSEFYDYETKYTDGRAQLHI 257 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP + ++++ L+ A QA+G G++R DF + P + +V E+N PG T +S++P Sbjct: 258 PAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYP 317 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ A +G SF EL+ +V+ Sbjct: 318 QLWAASGLSFPELVHRLVQ 336 >gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 304 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPGEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG ++ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 329 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 153/304 (50%), Gaps = 22/304 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL +V DV + +L P + F VLHG Sbjct: 22 VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120 GEDG ++ +LEL +PY + A + K +K +V+ G+ V + + + F Sbjct: 82 GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141 Query: 121 QH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 H ++ P +KP +GGS+ G + + ++P L+ S + + D LIEQ V Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAALV--SCFAYSDTALIEQQV 199 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G +L EI VP Y Y +Y++ + PA++ ++ + Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEI-VPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAA 258 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF--- 285 A AH+A+G R +SR+D + D R V++LE+NV PGMT S P AG F Sbjct: 259 DAAVTAHRALGLRDVSRTDLIIDETGR-VYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVV 317 Query: 286 -REL 288 REL Sbjct: 318 CREL 321 >gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] Length = 362 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S+E EVS+ S + A AL+ + F + + V + Sbjct: 7 VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66 Query: 47 -----AHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 A KP D+AF +LHG +GEDG VQ + ++L +PY Sbjct: 67 STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKG 135 +++SA MDK K++ G+P +LV R F + + L P IKP Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKL-GLPMFIKPANA 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193 GSS+G+ +K + L + ++ +++IE+Y+ G E+ C V+G A Sbjct: 186 GSSIGVHKVKTEAEFGPALEDALRYDR--KVIIERYIQGREIECSVLGTTDAPKASTAGE 243 Query: 194 -VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + DFYSYE KY N +PAKI +Q LA A+GC G++R DF Sbjct: 244 VITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S ++ EIN PG T +S++P+M ++G ++ +L+ +++ Sbjct: 304 E-SGALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLID 345 >gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] Length = 349 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 165/339 (48%), Gaps = 55/339 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLA--------- 47 + +L GG S E EVS++S +A A AL+ D + V + + ++ G+ +A Sbjct: 6 IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKN-GVWIAGETADEVLE 64 Query: 48 ----------------HLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 P+L F VLHG GEDG +Q +L L+++P+ SG+L Sbjct: 65 SKTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K + G+P V R + S I P P +KP Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS+GI + + L ++S++ +++IE V EL C V+G+ AS+ V Sbjct: 185 LGSSVGIAKARSHSELEAALDSAASYDR--RIVIEAGVTARELECAVLGNDNPKASV-VG 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI SDFY YE KY+ S +PA +P + K++Q +A A + + G++R DF + Sbjct: 242 EITF-DSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFY 300 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ ++ EIN PG T S++P++ G SF +L+ Sbjct: 301 VEETQAIYLNEINTLPGFTKFSMYPQLWQATGISFEQLV 339 >gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 320 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 159/315 (50%), Gaps = 24/315 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ LA PD LHG Sbjct: 13 VLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHGAT 72 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT--- 117 GEDG ++ +L+L +PY AS L+ DK +K V+ G+ P ++ +RF+ Sbjct: 73 GEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSELG 132 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V++ ++P ++ +++ L+E Sbjct: 133 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDAAALPAAMVGCFAYDP--TALVE 187 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +YV G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ + + Sbjct: 188 RYVSGMDVAVSVIDLGDGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHTPARLEPAVAE 246 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +V +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F Sbjct: 247 KVGEVALAAHTALGLRDLSRVDLIVDSAGLP-HVLEVNVSPGMTETSLLPLAVQAAGLDF 305 Query: 286 RELLLWMVEDASCLR 300 ++ +V A R Sbjct: 306 GRVIGSLVARAVTRR 320 >gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] Length = 342 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 170/309 (55%), Gaps = 23/309 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ P + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQ-- 124 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + H++S P VIKP GGS+LGI + +++ ++ ++ +G +L++EQ Sbjct: 125 LGASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQ 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +DG ++ V+ G +L E++ + Y Y+ +Y++ + + +PA++ ++ + Sbjct: 183 RIDGRDVAVSVVDLWDGPVALPPVEVSTDRG-RYDYDARYTTDETEYFVPARLSDELLAD 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSF 285 +Q A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A A SF Sbjct: 242 LQAAAVEAHTTLGLRDLSRMDFVVDD-EGTCWFIDANVAPGMTDTSLLPQAADALEDSSF 300 Query: 286 RELLLWMVE 294 +L +V+ Sbjct: 301 AQLCADIVD 309 >gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] Length = 375 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 57/344 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-------------GLVLA 47 + +L GG S E EVSL S + A++ + V I +++ G + Sbjct: 7 VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66 Query: 48 HL--------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L K D+ F VLHG FGEDG +Q + EL ++ Y SG+L S Sbjct: 67 QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSS 138 A MDK K++ ++ +P+ + + + T + + P +KP GSS Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA 193 +GI + +P + +++ ++ +++IEQ V G EL V+G+ + + + + Sbjct: 187 VGISKVHDRSELPKAMDEAARFDR--KIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244 Query: 194 --VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FY Y KY + +++ +PAKI K+++ +A A +A C G++R DFL Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304 Query: 251 DPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DP S K++ EIN PG T +S++P++ G S+REL+ Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELI 348 >gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 315 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 15/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ A AL G +VS DVD + L L+PDL + +LHG Sbjct: 9 VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNR 115 GEDG V+ +++LL + +G AS ++ K +K VV+ G+ P L Sbjct: 69 ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128 Query: 116 F----TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+ + P V+KP +GGS+LG+ ++ +P ++ +++ D LIE+ Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAMVDCFAYS--DTALIER 186 Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ V+ GD + + + + Y Y+ +Y+ + PA++ + + V Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G +SR+D + D F LE+NV PGMT S+FP+ A AG++ +L Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDAEGTPWF-LEVNVAPGMTETSLFPQAAEGAGHNLGDL 305 >gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] Length = 350 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 143/258 (55%), Gaps = 15/258 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL + VLHG GEDG +Q + +L P+ +G+L SA+SMDK K SS G+ P + Sbjct: 93 DLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLGSAVSMDKQAMKSAFSSAGLSQVPYV 152 Query: 112 LVNRFTMDS-----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 ++ ++ + ++ P +KP GSS+GI ++ Q + L Q+++ Sbjct: 153 ALHASELEDAKSRSALLDRIERELNYPCFVKPANLGSSVGISKVRSRQELEAGLEQAAAL 212 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218 + +L++EQ V+ E+ C V+G +L+ + I + +D+Y YE KY++ ST ++PA Sbjct: 213 D--PRLVVEQGVNAREVECAVLGRRTLEASVIGEVRFDADWYDYETKYTAGRSTTLIPAP 270 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P + ++ A A A+G G+SR DF +D + +++ EIN PG T S+FP + Sbjct: 271 LPDPVRDRIREQALQACAAVGVHGMSRVDFFYDETNDQLWINEINTLPGFTAQSMFPMLW 330 Query: 279 AYAGYSFRELLLWMVEDA 296 A +G + +L+ +++ A Sbjct: 331 AASGVTLEQLVHKLIQTA 348 >gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 304 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ I P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I + F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 238 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 295 Query: 297 SCLR 300 +R Sbjct: 296 LKVR 299 >gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] Length = 367 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 21/263 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + EL I Y G+LASA MDK R+K ++ + G+P+ + Sbjct: 111 DVIFPVLHGPHGEDGTIQGLFELSGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQV 170 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +++ + + + + P +KP +GGSS+GI + D LD + H ++++ Sbjct: 171 VLHVGESLSDEDKETLGLPVFVKPARGGSSIGISRV--DDWANLDAAVELAREHDWKVIV 228 Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPK-------SD--FYSYELKYSSLNSTHVLPA 217 E VDG E+ GV+ D SL +++VP SD FY +E KY + +PA Sbjct: 229 EAGVDGAEVEIGVLQRADGSL---QVSVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPA 285 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++P D+ K + A A +A+G G++R DF E+N PG TP+S++P+M Sbjct: 286 ELPKDVLKALDTDARRAFRALGSDGLTRVDFFV--TDNGPIINEVNTMPGFTPISMYPQM 343 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A +G ++ ELL ++E A R Sbjct: 344 FAASGVAYEELLSALIERALVAR 366 >gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 379 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSI 273 K+ + + +++LA A AI CRG++R DF ++ EIN PG T +S+ Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVINDGPVINEINTMPGFTTISM 348 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M A +G + LL M+E A Sbjct: 349 YPRMWAASGVDYPTLLATMIETA 371 >gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] Length = 350 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 + V+ GG SSE EVS S + A A++ + ++ + + + Sbjct: 6 LVVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRD 65 Query: 43 GLVLAHLKPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSG 83 G V A + PD F VLHG +GEDG +Q + E+ +IPY G Sbjct: 66 GKVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCG 125 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF-----TMDS-QHLISPPYVIKPLKG 135 +LASA SMDK +K +V + GV +L F MD + + P +KP K Sbjct: 126 VLASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKA 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191 GSS G+ QS+ L ++ +++ ++L+E+ + G EL CGV+G + V E Sbjct: 186 GSSKGVNKAVDRQSLKSALEEAVKFDN--KILVEETIVGRELECGVLGYKDNTQASGVGE 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I + ++FY ++ KY++ S V+ A IP +I E++ A +A+ G+SR DF + Sbjct: 244 I-LAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLE 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + KV + EIN PG T +S++P + GY +L+ ++E Sbjct: 303 KGTNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIE 345 >gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 356 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 161/344 (46%), Gaps = 58/344 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GGISSE ++S S + L +++ + + Sbjct: 3 LAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAW 62 Query: 39 DRSVGLVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIP 78 +R G V L PD F VLHG GEDG +Q +LEL IP Sbjct: 63 ERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIP 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPY 128 Y G+ ASA +MDK +K+V+ GV L R+ + L + P Sbjct: 123 YVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPV 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---A 185 +KP GSS+G V K + + L + + ++L+E+++DG E+ C V+G+ Sbjct: 183 FVKPCSQGSSVG--VAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQ 240 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V EIA P +FY+++ KY +S +PA I + V++ A + A+GCRG+SR Sbjct: 241 ASTVGEIA-PTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSR 299 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF S +V + E+N PG T +S++P++ Y G + ELL Sbjct: 300 VDFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELL 343 >gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 331 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 39/324 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKP-- 51 +AVL GG S ER+VS++S AL G +V +D + L+ A + P Sbjct: 3 IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F LHG GEDG +QA+L+L + YT S + Sbjct: 63 PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA++MDK SKQ+ + GVP ++ + + + P V+KP K GS++G+ V++ Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + N+ D+++IE+++ G E T G++ +L V EI VP ++ + Y K Sbjct: 183 EASELAKAI--ELAMNYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVP-NEIFDYHAK 239 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y ++ + PA I +Q +A AH A+ SR DF + + V+ LE N Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRVED-NGAVWCLEGNSL 298 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PGMT S+ P+ A AG F ELL Sbjct: 299 PGMTANSLLPQAARAAGIEFPELL 322 >gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142] gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 351 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39 + +L GG S E EVS++S A A AL+ G ++ D+ D Sbjct: 8 VGLLFGGRSGEHEVSINSAAAIAQALQ-TGDNANKYDILPIYIQKNGVWVAGDTANEVLD 66 Query: 40 RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L P ++ F VLHG GEDG +Q +L L+++P+ SG+L Sbjct: 67 SKAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLG 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K + G+P V R + S I P P +KP Sbjct: 127 SAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI ++ + L ++S++ +++IE V+ EL C V+G+ + + I Sbjct: 187 LGSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKASVIGE 244 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + DFY YE KY+ S +PA +P I ++Q +A A + + G++R DF + Sbjct: 245 VTFEGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVE 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S++P++ G +F +L+ +V+ A Sbjct: 305 ETEEIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348 >gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102] gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102] Length = 366 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 20/254 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q +L L+++P+ SG+L SA+ MDK+ K G+ Sbjct: 103 DIWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYK 162 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + R + S + P P +KP GSS+GI ++ Q + L ++S Sbjct: 163 AITRAQVWSNPCVFPKLCDEIEAALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAAS 222 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ +L++E V E+ C V+G+ AS+ V EI+ SDFY YE KY+ + ++ Sbjct: 223 YDR--RLVVEAGVVAREVECAVLGNDQPQASV-VGEISY-DSDFYDYETKYTEDRADLLI 278 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA IP I +++Q +A A A+ G++R DF + +++V EIN PG T S++P Sbjct: 279 PAPIPDAIARQIQDMALQAFAAVDAAGLARVDFFYVEATQEVLINEINTLPGFTATSMYP 338 Query: 276 EMAAYAGYSFRELL 289 ++ A++G SF EL+ Sbjct: 339 QLWAHSGVSFPELV 352 >gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM 44385] gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 412 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 21/268 (7%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 VG V A + D+ F VLHG FGEDG VQ + ++ +PY +G+LASA SMDK +K++ + Sbjct: 146 VGQVFADV--DVIFPVLHGGFGEDGTVQGLFDMASVPYVGAGVLASAASMDKEFTKKLAA 203 Query: 102 SCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + G+P+ +++ T + ++L+ P +KP +GGSS+GI K DQ LD Sbjct: 204 AEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVKPARGGSSIGI--SKVDQWDELDDALDL 261 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----------ASLDVTEIAVPKSDFYSYELKYSS 208 + H ++++E + G E+ CGV+ A L+ TE FY ++ KY Sbjct: 262 ARQHDSKVIVESMIVGTEVECGVLQRPDGTVEASLPAQLEDTESG--DEGFYGFDTKYLD 319 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T +P D + ++ LA A+ C G++R DF R EIN PG Sbjct: 320 NVITAQIPPHFDDDTIRHIRELAVETFHALDCEGLARIDFFV--TDRGPVLNEINTMPGF 377 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S++P+M G + +LL +++ A Sbjct: 378 TPISMYPQMFGAMGIDYPDLLDLLIQRA 405 >gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] Length = 355 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 166/336 (49%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAG-FKVSQIDVDRSVGLVLA--------- 47 + +L GG S E EVS+SS +A A AL E+A +++ + ++ G LA Sbjct: 6 VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKN-GCWLAGEIPQQVLE 64 Query: 48 ----HLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 HL+ D+ F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 65 TGTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136 L MDK+ K G+P + R + S + P P +KP G Sbjct: 125 LGMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIA 193 SS+GI ++ Q + L +++++ ++++E V E+ C V+G+ V EI Sbjct: 185 SSVGIAKVRSRQELEAALDNAATYDR--RIIVEAGVVAREVECAVLGNDQTKASIVGEIT 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ + ++PA IP + +++Q +A A A+ G++R DF F Sbjct: 243 F-NSDFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEA 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ EIN PG T S++P++ A +G F EL+ Sbjct: 302 TGEILINEINTFPGFTATSMYPQLWAESGIPFPELV 337 >gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] Length = 313 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 145/291 (49%), Gaps = 7/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG ++ER VSL SG+A +AL +D + + F LHG Sbjct: 19 VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE G VQ L+ +++ YT SG++ASA+++DK+R K + +P PS Sbjct: 79 GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPT-PSFCELSINSHW 137 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +I ++KP GSS+G+ + + +S + ++ EQ+V G E T Sbjct: 138 DDIIRQWGKVIVKPASEGSSIGMAIATTGAELKGAYEIASQYQGA--VMAEQWVQGAEFT 195 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G +L V + FY YE KY S ++ ++ P + +E++++A A ++ Sbjct: 196 VAILGKETLPVIRLETDHG-FYDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSV 254 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 GC G R DF+ D S F LE+N PGMT S+ P A A +F EL+ Sbjct: 255 GCEGWGRVDFMQDE-SDNFFLLEVNTVPGMTDHSLVPMAAKEASVNFEELV 304 >gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] Length = 358 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 18/257 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 96 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ + + +++LA A AI CRG++R DF + EIN PG T +S++P M Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 331 Query: 278 AAYAGYSFRELLLWMVE 294 A +G + LL M+E Sbjct: 332 WAASGVDYPTLLATMIE 348 >gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] Length = 293 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 148/290 (51%), Gaps = 11/290 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFG 63 MGGISSERE+SL SG +L+ ++ ++ +D ++ D AF LHG FG Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDS 120 EDG VQ++LE +IPY+ G L+SA+ MDK SK++ + G+P I V D Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSS+ +IK+ I + Q + +++IEQY+ G E T Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEVDT--EVMIEQYLPGEECTSF 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D + T + +F+ +E KYSS N + + ++ + + A C Sbjct: 179 IL-DGEVFPTVSIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237 Query: 241 RGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R R DF+ +S V + LE+N PG+T S+ P AA G S+ +LL Sbjct: 238 RAYVRVDFI---ISNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLL 284 >gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B] gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] Length = 304 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG Q LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGEE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] Length = 304 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + P V+KP GGSS+G+ ++ D++ + +L++ W+ +++IE+Y+ G E Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGKHLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A AG ++ +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 364 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 96 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSI 273 K+ + + +++LA A AI CRG++R DF ++ EIN PG T +S+ Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVINDGPVINEINTMPGFTTISM 333 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M A +G + LL M+E A Sbjct: 334 YPRMWAASGVDYPTLLATMIETA 356 >gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC 13950] Length = 381 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 146/269 (54%), Gaps = 22/269 (8%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK +K++ ++ Sbjct: 112 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAA 169 Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQS 157 G+PV ++ R + + P +KP +GGSS+G+ + DQ LD + Sbjct: 170 EGLPVGDYAVLRPSRARLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQ---LDAAVA 226 Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYS 207 ++ H ++++E + G EL CGV M D +++ + EI V + FY + KY Sbjct: 227 AARRHDPKVIVEAAIVGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + +PAK+ +I V++LA A +AI C+G++R DF EIN PG Sbjct: 287 DDAAELDVPAKVDDEIADTVRQLAVRAFKAIDCQGLARVDFFL--TEDGPVLNEINTMPG 344 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P M A +G + LL MVE A Sbjct: 345 FTTISMYPRMWAASGVDYPTLLATMVETA 373 >gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 368 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LE+ IPY + + ASA +MDK +K++ ++ G+P+ P + Sbjct: 107 DVVFPVLHGAYGEDGSIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYV 166 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ T + + P +KP + GSS GI I LD +++ ++L+ Sbjct: 167 VLRSGMTLTEQDKQRLGLPVFVKPSRAGSSFGITKISDWAE--LDAAVATARQIDSKVLV 224 Query: 169 EQYVDGIELTCGVMGDASLDVTEIA-------VPKSDFYSYELKYSSLNST--HVLPAKI 219 E V G E+ CGV+ + V E + V + DFY +E KY S + +PA + Sbjct: 225 EAAVVGREIECGVLEGEAGGVPEASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGL 284 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + ++VQ A A A+ C G++R+DF P ++ EIN PG TP S+FP M A Sbjct: 285 SERVTRQVQEYAVRAFTALDCAGLARADFFVTP-ELDIYLNEINTMPGFTPSSMFPRMWA 343 Query: 280 YAGYSFRELLLWMVEDA 296 +G + +L+ ++ A Sbjct: 344 ASGLEYPKLVNRLIRTA 360 >gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] Length = 329 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------RSVGLVL-------- 46 +A+L GG +ER VSL S + L D ++ I+++ + G V+ Sbjct: 4 VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63 Query: 47 ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++K DL + +LHG+ EDG +Q E+L IPYT +++SA++ +K K + S Sbjct: 64 TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123 Query: 104 GVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +P+ PS ++ + + P +KP K GSS G + + + ++ Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQLAGAI--EHAF 181 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + D++++E ++ G E + GV+ L +TEI VP ++F+ ++ KY + S + P Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEI-VPHNEFFDFKAKYEN-QSQEITP 239 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A++ + +VQ L ++A+GCRGI R D++ + F+LE N PGM+ SI P+ Sbjct: 240 ARLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQ 297 Query: 277 MAAYAGYSFRELLLWMVEDA 296 A G+S ELL V++A Sbjct: 298 QARAHGWSITELLDAAVDEA 317 >gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] Length = 370 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 149/289 (51%), Gaps = 18/289 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----DLAFNVLHGNFGEDGLVQAI 71 L G A+ AG Q D +V P D+ F VLHG GEDG VQ + Sbjct: 69 LPGGSISATTTASAGVG-DQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQGL 127 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLIS---- 125 LEL+ +PY G+LASA+ MDK +K S G+PV P +LV R + + Q ++ Sbjct: 128 LELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIES 187 Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS+G+ + ++ + +++S++ ++++EQ + E+ V+ Sbjct: 188 RLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDR--RIIVEQGIPAREIEVSVL 245 Query: 183 GD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ V +P ++Y Y KY S +S ++PA I L++ +V+ LA A +AI Sbjct: 246 GNDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAIDG 305 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G++R DFL + + ++ EIN PG TPVS++ M +G + LL Sbjct: 306 AGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLL 354 >gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0770_33G18] Length = 298 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 144/259 (55%), Gaps = 19/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ + S+ G+P + Sbjct: 31 DVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFSAAGLPQTRFV 90 Query: 112 LVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSW 160 ++ R + + P IKP+ GSS+GI +L+Q S+ Sbjct: 91 VIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRD----ELIQGVDSAG 146 Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE V+ E+ C V+G+ L+V+ + VP ++FY Y KY +T ++PA Sbjct: 147 VYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 206 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P K++Q ++ +AI C G++R DFL ++ EIN PG TP+S++P++ Sbjct: 207 DLPGATVKQIQEMSIRTFRAIDCSGLARVDFLIGQ-DGEILLNEINTMPGFTPISMYPKL 265 Query: 278 AAYAGYSFRELLLWMVEDA 296 A AG ++ +L+ +++ A Sbjct: 266 WAAAGLNYPDLIDRLIQIA 284 >gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL+S + A++ ++V I + Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 40 -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 +AL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF F ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG T S +P M A G S+ L+ Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331 >gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv] gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium tuberculosis H37Rv] gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra] gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] Length = 373 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 18/257 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ + + +++LA A AI CRG++R DF + EIN PG T +S++P M Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 346 Query: 278 AAYAGYSFRELLLWMVE 294 A +G + LL M+E Sbjct: 347 WAASGVDYPTLLATMIE 363 >gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] Length = 355 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 168/350 (48%), Gaps = 56/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +AVL GG S+E VS S A L+ F+V I Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 37 DVDRSVGLVLA-----------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 +V R L L+ + + D+ F +LHG +GEDG +Q + EL IPY Sbjct: 67 EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+++S+ G+PV P ++V T++ + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GD--ASLDVT 190 SS+G+ + P + + D++L+E + G E+ GV+ G+ AS+ Sbjct: 187 SSIGVSKVSDWADFPEAV--RIALEDDDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244 Query: 191 EIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + SD FY +E KY T +PA P ++ +++ +A A +A+ C G+SR DF Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 305 FV--TEEGLYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASAEA 352 >gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 367 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 40 --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T D LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALALDYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSYE KY S + V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 348 >gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 340 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 53/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG+S EREVSLSSG A+AL + G++V +D+ + V Sbjct: 3 VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62 Query: 46 -----------LAHLKPDLA--------------------FNVLHGNFGEDGLVQAILEL 74 L LK D F LHG+ GE+G +QA+ ++ Sbjct: 63 YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132 I YT SG + S L+MDK SK ++ G+ P +V T + + + P VIKP Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIET-PDYIVADLTEEQELEKTLMLPCVIKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 L GSS+G+ +++ + + L + + +++LIE+ + G E + G++ +L + EI Sbjct: 182 LSCGSSVGVSIVRSQEELGKALDYAKKYE--NKVLIEELIVGREFSVGILNHHALPLIEI 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +PK+ FY Y KY + +T V PA++ +I ++Q A H+ + SR DFL Sbjct: 240 -IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLLKE 298 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + LE N PGMTP S+ P+ AA G S+ +L Sbjct: 299 -DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKL 333 >gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae FF5] Length = 264 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 12/249 (4%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F ++HG FGEDG +Q +L +L +P+ + +L+SA+ MDK +K+++ G+ V P + Sbjct: 1 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60 Query: 113 VNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++R FT + L P IKP GSS+G+ + + L ++H +LL Sbjct: 61 LSRGESLSFTEAADQL-GLPMFIKPANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLL 117 Query: 168 IEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224 IEQ + G E+ C V+G D + V + +FY+Y+ KY + + + +PA++P D+ Sbjct: 118 IEQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLS 177 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +V+ +A A++ +GC G+SR DF F R + E+N PG T +S++P++ +G S Sbjct: 178 DQVREVALQAYKVLGCAGLSRVDF-FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLS 236 Query: 285 FRELLLWMV 293 + EL+ ++ Sbjct: 237 YAELIHRLI 245 >gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] Length = 316 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 18/297 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A L G V D D ++ L KPD+ + LHG Sbjct: 10 VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120 GEDG ++ +L+L+ IPY S A+ L+ DK +K +VS GV SI ++R F Sbjct: 70 GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129 Query: 121 QHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 H I S V+KP +GGS+ G+ ++ +P ++ +++N+ D LIEQ + Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAMV--NAYNYCDVALIEQRI 187 Query: 173 DGIELTCGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV MG +L EI P Y++E +Y++ + PA+I Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEID-PVGGAYTFEARYNAGQTRFYTPARISGADADRAA 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH A+G R +SR D + D F LE NV PG+T SIFP+ AG+ Sbjct: 247 EAALAAHSALGLRHLSRVDMIVDGAGTPWF-LEANVLPGLTETSIFPQALVAAGHDL 302 >gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens] Length = 265 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 9/230 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F LHG +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P Sbjct: 36 DRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWR 95 Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 LV T + + P ++KP + GS++G+ + + + +S ++ ++L E Sbjct: 96 LVASAGETRAALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLASRYD--PEVLCE 153 Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++++G E TC V+G +L V I P+ + Y Y+ KY + ++ + P+ +P + Sbjct: 154 EFIEGDETTCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEA 212 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 E++R+ A + +GCRG SR+D + RK F LEIN PGMT S+ P Sbjct: 213 EIRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVP 262 >gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] Length = 304 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I L W+ +++IE+Y+ G E Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIST-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY + + ++P ++ + V + + ++ Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + +E+N PGMT S+ P+ A G + +LL ++E Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 294 Query: 296 ASCLR 300 + +R Sbjct: 295 SLRVR 299 >gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255] Length = 299 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + + D+ F +L Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 62 HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D I P IKP GGSS+ I + + + + + ++IE+Y+ G Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGLEVD--EFVMIEKYIPGG 179 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++ I S F+ YE KYS + ++ K V ++ Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238 Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C+ R D + +S + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_32L01] Length = 281 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 143/255 (56%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ V S+ G+P S+ Sbjct: 14 DVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTRSV 73 Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +++R + + + P +KP GSS+GI + + L + ++ Sbjct: 74 VIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGIYD- 132 Query: 163 GDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKI 219 ++LIE V+ E+ C V+G + +V+ + VP ++FY Y KY +T ++PA + Sbjct: 133 -TKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPADL 191 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++Q ++ A +AI C G++R DFL ++F EIN PG TP+S++P++ Sbjct: 192 PEATVSQIQEMSIRAFRAIDCSGLARVDFLISQ-DGEIFLNEINTMPGFTPISMYPKLWE 250 Query: 280 YAGYSFRELLLWMVE 294 AG S+ +L+ +++ Sbjct: 251 EAGLSYPDLIDKLIQ 265 >gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977] gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus] Length = 381 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 149/282 (52%), Gaps = 30/282 (10%) Query: 36 IDVDRSV-GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 ++VD S G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK Sbjct: 101 VNVDSSAAGQVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKE 158 Query: 95 RSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +K+++++ G+P+ ++ T+D + + P +KP + GSS G+ + + + Sbjct: 159 FTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPVFVKPARAGSSFGVSRVTAWEEL 218 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKSD------- 198 P + + ++ ++++E + G EL CGV+ GD V EI V + Sbjct: 219 PAAIAHARQYDP--KVIVEAAIVGRELECGVLEFPDGDTRASVLGEIRVEGVNRDQTAAG 276 Query: 199 -FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLS 254 FY +E KY + +PAK+ D+ +++ LA A +AI C+G++R DF PL Sbjct: 277 AFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAFRAIDCQGLARVDFFLAEDGPLI 336 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P M G + LL MV A Sbjct: 337 N-----EINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRTA 373 >gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] Length = 361 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 159/349 (45%), Gaps = 64/349 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + VL GG SSE +S ++ A++ F+V + + R VL PD Sbjct: 6 VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65 Query: 53 -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75 + +LHG FGEDG VQ +LELL Sbjct: 66 LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127 IPY G+L SA+ M+K +KQV+ + VPV P + V+R + + P Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----- 182 +KP + GSS+G+ + + + LD +++ +L+E+ + G EL CGV+ Sbjct: 186 VFVKPNEAGSSVGVTKVSRWED--LDAALDTAFAEDGLVLVEKAIVGRELECGVLPGRDG 243 Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + V EI V +FY +E KY V PA++ E+QR+A A +AIG Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +G++R DF + F E+N PG TP+S+FP +G S+ +L+ Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLI 350 >gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 367 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 40 --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T D LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALALDYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSYE KY S + V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 348 >gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 367 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 6/245 (2%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F LHG+ GEDG +QA EL+ I YT + ++SA+SM K +K+V+ G+P+ Sbjct: 122 KADIVFMGLHGSNGEDGKIQAAFELMGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPK 181 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I +++ + P V+KP GGSS+G+ ++ ++ L + ++++ D +L+E Sbjct: 182 GIALHK--GHKVEYVPFPCVVKPCCGGSSVGVSIVNSEEEFKRAL--TDAFSYEDNILVE 237 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +++ G E + GV+ +L V EI P FY Y+ KY + + PA +P +I +++QR Sbjct: 238 EFIKGREFSVGVLNGKALPVIEIE-PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQR 296 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A + G +R D L + ++ LEIN PGMT S+ P+ AA G S+ EL Sbjct: 297 WAEKACETAGVTTYARVDELLNE-DGDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELT 355 Query: 290 LWMVE 294 ++E Sbjct: 356 KKIIE 360 >gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836] Length = 326 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 46/329 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VDRSV-- 42 +A++ GG SSE VS S S L+ + + ++ VD++ Sbjct: 5 IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64 Query: 43 --GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L +K D AF ++HG GEDG +QA ++L+IPY+ G++ S+L+M+K + Sbjct: 65 FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + G+ V S+ +N+ DS++ I+ P +KP GGSS +K +D Sbjct: 125 RNFGIRVADSLYLNK---DSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKS-----VD 176 Query: 154 LLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKY 206 LQ + ++ ++IE ++ G E+TCG + +V TE+ V +DF+ Y+ KY Sbjct: 177 QLQKAIDVAFGETPDVIIESFIKGTEVTCGCYKIKNKEVVFPLTEV-VTSNDFFDYDAKY 235 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + PA+I +I +E+QRL + +G +GI R DF+ K + LE+N P Sbjct: 236 EG-QVEEITPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFIIS--DNKPYLLEVNTVP 292 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ A AG + E+L ++E+ Sbjct: 293 GMTQTSFIPQQVAAAGLNITEVLTEIIEN 321 >gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331] Length = 394 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 109/356 (30%), Positives = 156/356 (43%), Gaps = 71/356 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SAL+ + V I + R VL P Sbjct: 28 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 88 VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126 LEL +PY +G+L+SA+ DK K+V S G+PV P +V D+ + Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207 Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI K D + LD + H + L+E + G E+ Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGI--TKVDDAAGLDEAIEEARRHDPKFLVESLLSGREIE 265 Query: 179 CGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EVQRLA Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SAAGLVPAPLTDEQTAEVQRLAVE 324 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +A C G+ R+DF V EIN PG TP+S+FP M +G + EL+ Sbjct: 325 AFEAASCEGLVRADFFLTDDGSFVI-NEINTMPGFTPISMFPRMWQASGVEYPELV 379 >gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 329 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 96/323 (29%), Positives = 167/323 (51%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40 +A++ GG +SE VSL S + S ++ + + + VDR Sbjct: 5 IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124 Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + T+ + +I P IKP GGSS G+ +KK + I + Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E +++G ELTCG D S+ +TE+ V ++++ YE KY+ S Sbjct: 183 AKAFEEAREVVVEAFMEGTELTCGCYKTKDKSIVFPITEV-VTHNEYFDYEAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP + VQ+L + +G +GI R D++ K+ LE+N PGMTP S Sbjct: 241 EITPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] Length = 377 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 135/254 (53%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + E+ IPY SG+L SAL MDK+ +K V GVP + Sbjct: 111 DVVFPVLHGCNGEDGTIQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYL 170 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R + + P IKP GSS+G+ + + L ++ ++ Sbjct: 171 FFTRKEIKENSDRVADAIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEALNFAAKYDR 230 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++LIE++++G E+ C V+G+ + + + +P ++FY Y KY +S V+PA +P Sbjct: 231 --KVLIEEFINGREVECAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLP 288 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D +++ A A +A+ C G+SR DF + +++ EIN PG T +S++P + Sbjct: 289 ADTILKIREYAVKAFKALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEA 348 Query: 281 AGYSFRELLLWMVE 294 +G + EL+ +++ Sbjct: 349 SGIPYSELIERLID 362 >gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A] gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 348 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF------------- 31 + V+ GG SSE EVS+ S K +AL + G+ Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67 Query: 32 -KVSQIDVDRSVGLV-LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K I +R + L L++++ D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDS-----QHLISPPYVIKPLKGGS 137 L MDK+ K V S +P P I +N+ M S +IS P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196 S+GI + + ++ ++ +++++E+ ++G EL CG++G + + + + K Sbjct: 188 SVGITKAYSKEEFIAGIEFAAKYD--ERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245 Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346 >gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] Length = 350 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S E VSL S AL+ + V +I +D Sbjct: 7 VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66 Query: 40 ----RSVGLVLAH------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + L LA + D+ F VLHG GEDG +Q + EL IP+ G Sbjct: 67 TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSL 139 + AS L MDK S Q+ G+ V P ++ +D + + P +KP +GGSS+ Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPK 196 GI I + LD + + H ++LIE+ V G E+ C ++ L + Sbjct: 187 GITKINTWEE--LDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDF+ YE KY ++ PA++P + ++++RLA + C+G+ R D P ++ Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + EIN PGMT S +P M AG SF +L ++E+A Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] Length = 311 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I + F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 187 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 245 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 302 Query: 297 SCLR 300 +R Sbjct: 303 LKVR 306 >gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630] gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26] gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932] gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42] gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55] gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34] gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79] gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196] gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291] gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58] gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Clostridium difficile] gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196] gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291] Length = 299 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + + D+ F +L Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 62 HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D I P IKP GGSS+ I + + + + + ++IE+Y+ G Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGLEVD--EFVMIEKYIPGG 179 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++ I S F+ YE KYS + ++ K V ++ Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238 Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C+ R D + +S + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] Length = 372 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 60/346 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------------VGL 44 + VL GG S E EVSL S + A++ ++V I + + GL Sbjct: 8 VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67 Query: 45 VLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D+ F VLHG FGEDG +Q +LEL ++ Y SG+L S Sbjct: 68 TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPLKGGSS 138 A MDK K++ ++ G+P P S+L + + D+ + + P +KP GSS Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193 +GI + + + ++ ++ +L++EQ V G EL V+G+ +L+ + + Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDR--KLVVEQGVGGPGAKPRELEVAVLGNETLEASVVG 245 Query: 194 --VPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +FY YE KY +N S ++PAK+ K+++ +A A +A C G++R D Sbjct: 246 EIVPAKEFYDYEAKY-QMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVD 304 Query: 248 FLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 FL +P ++ K + EIN PG T +S++P++ +G + EL+ Sbjct: 305 FLMEPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELI 350 >gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] Length = 366 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S+E EVSL S K A++ F V + +D+ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 41 ---------SVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ A + D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ + + + + ++H ++++E + G E+ C V+G+ S + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNDSPQAST 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI V S+FYSY++KY + V+PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVV-SSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G ++EL+ ++E Sbjct: 303 VFLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIE 348 >gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] Length = 361 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35 + ++ GG SSE EVS+ SG+ A++ + GF S Q Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 36 IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 I+ R+V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF D +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346 >gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii] Length = 348 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 133/245 (54%), Gaps = 11/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DLAF VLHG GEDG VQ +LEL IP G+LASAL MDK R+ ++ + G+ V P Sbjct: 99 DLAFPVLHGKNGEDGTVQGLLELAGIPIVGCGVLASALCMDKDRAHRLAGAAGISV-PKA 157 Query: 112 LVNRFTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 +V + + ++ P P +KP++ GSS GI I + LD S+++ H D++ Sbjct: 158 VVLQKHQKCRAVVLPEDFTYPLFVKPVRAGSSCGIAKIYGEGE--LDAAVSAAFCHDDEV 215 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++E+ VDG E+ C ++G L V + + F+ + KY+ +S +PA+I Sbjct: 216 IVEENVDGFEVGCAILGMDVLTVGRVDEIELTGGFFDFTEKYALKHSRIHMPARIDAKTE 275 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +++Q A +Q +GC G +R D P S V + E+N PG T S +P M G S Sbjct: 276 QKIQETAKNIYQVLGCSGFARVDMFLTP-SGDVVFNEVNTIPGFTAHSRYPNMMKGIGLS 334 Query: 285 FRELL 289 F +LL Sbjct: 335 FEQLL 339 >gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] Length = 366 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG SSE EVSL S K A++ F V + +D Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65 Query: 40 --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R++ LV A + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R + H + P IK Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ + + + S++H ++L+E + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAFSYDH--KVLVESAIVGREIECAVLGNDHPEASV 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI V +FYSY+ KY S + V +PA +P ++ ++ +A A QA+ C+G++R D Sbjct: 244 CGEIVV-HDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V E+N PG T +S++P++ G + L+ ++E Sbjct: 303 VFLTP-QEDVIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIE 348 >gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437] Length = 367 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q +LE+ +IPY +G+LASA+ MDK+ K++ + G+P Sbjct: 97 DVVFPVLHGTFGEDGTIQGMLEIADIPYVGAGVLASAVGMDKVMMKKIFAQEGLPQGDFT 156 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R ++ + + P +KP GSS+GI K + + L ++ ++ Sbjct: 157 FCLRRAIEQDIDTVISGIEAEFAYPCFVKPANLGSSVGISKAKNREELKGALQLAARYDR 216 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+++D E+ V+G+ V V +DFY Y KY S +PA +P Sbjct: 217 --KVIVEEFIDAREVEVAVLGNEEPVASVPGEIVSSNDFYDYRAKYIDGKSEMRIPADLP 274 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +E+ LA A+Q I C G++R DF K+ EIN PG TP S++ + + Sbjct: 275 EPVLEEISGLALKAYQGIDCSGLARVDFFIRKSDGKILINEINTMPGFTPFSMYANLWKH 334 Query: 281 AGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 335 SGISYPELISRLID 348 >gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 304 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + L W+ +++IE+Y+ G E+ Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTSMLETVFEWDS--EVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 380 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/347 (29%), Positives = 172/347 (49%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 19 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78 Query: 40 --------RSVGLVL-AH---LKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ AH L+P D+ F ++HG GEDG +Q +L + + Sbjct: 79 RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 + SG+L SA++MDK +K+V+ G+ V P + NR T D L++ P +K Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A+ + Sbjct: 199 PANQGSSVGVSQVRTAEQFAAALALALAYDH--KVLVEAAVTGREIECAVLGNATPQASV 256 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S + V+PA I + +Q++A A+QA+ C G++R D Sbjct: 257 CGEVVVHDA-FYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVD 315 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 316 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITQLIE 361 >gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] Length = 323 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 16/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V I +D + + + L D + L Sbjct: 21 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRF 116 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + S+ V Sbjct: 81 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE- 139 Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171 T+D + + + V+KP GGSS+G+ ++ + + L+L+ + + LIE+ Sbjct: 140 TVDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELV----FGMDKEALIEEV 195 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G+E++ V+ I D++ YE KY+ + + + P + E+ + A Sbjct: 196 LHGVEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFA 254 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L Sbjct: 255 KDSYYGLKCEGFARIDFMV-VNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDL 313 Query: 292 MVEDA 296 ++E + Sbjct: 314 LIESS 318 >gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 304 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I + F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 180 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 238 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 295 Query: 297 SCLR 300 +R Sbjct: 296 LKVR 299 >gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 43/325 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------LKP 51 ++VL GG S ER+VS++S AL G +V +D R A ++P Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV P +++ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGV-RTPDWIIDPEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + +P L + HG +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAEELPAAL--ELARRHG-TVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEIN 263 KY + PA +P ++ +E + A AH+ + G SRSDF D W +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLD--DAGALWIIEAN 296 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288 PG+T S+ P+ AA G + EL Sbjct: 297 SLPGLTATSLLPQSAAAVGIGYPEL 321 >gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B; D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 349 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 138/255 (54%), Gaps = 20/255 (7%) Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 AF LHG GEDG +Q L+ L IP+T SG+LAS+L+MDK R+ + + G+PV P + + Sbjct: 97 AFLGLHGGAGEDGRIQGFLDTLGIPHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLEL 156 Query: 114 NRFTMDSQHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + D + + S P IKP GGSS+ + K + L + D++L+ Sbjct: 157 EKGKTDPRKTLLNLSFSYPVFIKPTLGGSSVNTGMAKTAEEA--MTLVDKIFVTDDRVLV 214 Query: 169 EQYVDGIELTCGVMGDAS--------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++ V G E++ GV+ L TEI PKS+F+ +E KY+ S + PA + Sbjct: 215 QKLVSGTEVSIGVLEKPEGKKRNPFPLVPTEIR-PKSEFFDFEAKYTKGASEEITPAPVG 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAA 279 ++ K +Q H+ +GC+G SR+DF+ +S V + LE N PGMT S+ P+ A Sbjct: 274 DEVTKTLQEYTLRCHEILGCKGYSRTDFI---ISDGVPYVLETNTLPGMTGTSLIPQQAK 330 Query: 280 YAGYSFRELLLWMVE 294 G + +++ W++E Sbjct: 331 ALGINMKDVFTWLLE 345 >gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 168/310 (54%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG+S ER+VSL+SG+ L G +V+ D DR++ L K +A LHG Sbjct: 10 VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRALLHNLERDKAVVALPALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LEL+ IPY + + ++ DK +++++ G+PV S+ ++ T Sbjct: 70 QFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRRGGIPVPDSVSLSSTTFRD 129 Query: 121 -------QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +H+IS V+KP +GGS+LG+ + ++P L++ ++ + D+ LIE+ Sbjct: 130 VGAPVLMEHVISRMGERVVVKPSRGGSALGVTGVDGLSALPAALVK--TYAYCDEALIER 187 Query: 171 YVDGIELTCGV--MGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + GI+++ V + + +T IA+ K + + +Y++ P +P + E Sbjct: 188 FYAGIDVSVVVHETDEGTKPLTPIAIDFSKGHEFDFAARYTAEFVGFGRP-DLPDALLTE 246 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A AH+ +G R ISR+DF+ P V LE+ + PG T S+FP A + G S Sbjct: 247 LGETAVRAHELLGMRDISRTDFMVTPDGGFVV-LEVAITPGATETSVFPFAAKHDGTSMG 305 Query: 287 ELLLWMVEDA 296 E+ L +++ A Sbjct: 306 EVTLALLKRA 315 >gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] Length = 350 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 145/258 (56%), Gaps = 15/258 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL + VLHG GEDG +Q + +L P+ +G+L SA+SMDK+ K +S G+ P + Sbjct: 93 DLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLGSAVSMDKLAMKSAFASAGLSQVPYV 152 Query: 112 LVNRFTMDS-----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 ++ +++ + ++ PY +KP GSS+GI ++ + + L Q+++ Sbjct: 153 ALHASELENAISRSALLDRIERELNYPYFVKPANLGSSVGISKVRSRKELEAGLDQAAAL 212 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218 + +L++EQ V+ E+ C V+G L+ + I + +D+Y YE KY++ ST ++PA Sbjct: 213 D--PRLVVEQGVNAREVECAVLGGRMLEASLIGEVRFDADWYDYETKYTAGRSTTLIPAP 270 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P ++ ++ A A A+G G+ R DF +D + +++ EIN PG T S+FP + Sbjct: 271 LPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDANDQLWINEINTLPGFTAQSMFPMLW 330 Query: 279 AYAGYSFRELLLWMVEDA 296 A +G + +L+ +++ A Sbjct: 331 AASGVTVEQLVHKLIQTA 348 >gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10] gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10] Length = 339 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 167/325 (51%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG S E VSL SG+ +L+ + V ++ V D Sbjct: 17 VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76 Query: 41 SVGLVLA-HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV L +K D+ FN++HG GE+G +QA + + YT G SAL+ +K + V Sbjct: 77 SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136 Query: 100 VSSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P S+ + + +D +I P +KP + GSSLGI +K + Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++LIE ++DG+E++ GV+ G++ L +TEI V +F+ YE KY S Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEI-VSHKEFFDYEAKYEGA-S 252 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + ++V+ +A A+ ++G G SRS+F+ + + LE+N PG +P Sbjct: 253 EEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPA 310 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A G S ++L VE A Sbjct: 311 SILPQQAKIYGISIKDLCGNEVEKA 335 >gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] Length = 357 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL------------------------EDAGFKVSQI 36 + +L GG S E EVS+ S A A AL E+ KV + Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65 Query: 37 DVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + L +L + DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136 + MDK+ K + G+P V R + S + P P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAV 194 SS+GI ++ Q + L +++++ ++++E V E+ C V+G+ A V Sbjct: 186 SSVGIAKVRSRQQLETALDSAATYDR--RIIVEAGVVAREVECAVLGNDHAQASVVGEIT 243 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ + ++PA +P I +++Q ++ A A+ G++R DF + + Sbjct: 244 FNSDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ EIN PG T S++P++ A G SF +L+ +++ Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQ 343 >gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 355 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+EREVS+SSG A AL G +V +DV Sbjct: 3 IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62 Query: 39 ---------------------------DRSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQ 69 R +G + + + D+ F LHG GE+G +Q Sbjct: 63 DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A L+L I YT SG L SAL+M+K +K V + PS + + D+ P + Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINT-PSGELYKNEKDALAWNMFPCI 181 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + ++ + D++++EQ+V G E + G++G +L Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEALKYE--DEIVVEQFVTGREFSVGLIGGKALPP 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PKS Y Y KY + + PA I + K+++ A A++A+ +R DFL Sbjct: 240 IEIA-PKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + LE N PGMTP S+ P+ AA G S+ +L ++E Sbjct: 299 LDK-GGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIE 342 >gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63] gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] Length = 299 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + + D+ F +L Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 62 HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D I P IKP GGSS+ I + + + + + ++IE+Y+ G Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGLEVD--EFVMIEKYIPGG 179 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++ I S F+ YE KYS + ++ K V ++ Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238 Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C+ R D + +S + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] Length = 343 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/334 (29%), Positives = 171/334 (51%), Gaps = 43/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR------- 40 +A+L GG S+E EVS S + ++ + + V I D+D+ Sbjct: 5 VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64 Query: 41 --------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + +L + + D+ F V+HG +GEDG +Q + +LL IP G++ASA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT--EIAVPKSDFY 200 Q + L ++ ++ ++L+E ++ E+ V+G D + T EI VP ++FY Sbjct: 185 AHNRQELESGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPMAATPGEI-VPANEFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KYS+ S +LPA + L+ ++V+ LA + + C G+SR DFL D + +V+ Sbjct: 242 DYEAKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG T +S++P+M G ++ EL+ ++E Sbjct: 302 EINTIPGFTKISMYPKMWQAEGKAYGELISEIIE 335 >gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 365 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 141/255 (55%), Gaps = 14/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F VLHG +GEDG +Q +LE+ IPY + + ASA +MDK +K++ + G+PV P + Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYA 166 Query: 111 ILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +L N T+ + + + P +KP + GSS GI K D + L+ +++ ++L+ Sbjct: 167 VLRNGVTLSEEDKRRLGLPVFVKPSRAGSSFGI--TKVDDWVDLEAAVAAAREIDPKVLV 224 Query: 169 EQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 E + G E+ CGV+ +AS+ V A D+Y +E KY S + LPA +P Sbjct: 225 EAAIVGREIECGVLEGEAGGGAEASVLVEVRAGGDHDWYDFEAKYLS-EPEYDLPATLPE 283 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + ++VQ A A A+ C G++R DF P V+ EIN PG TP S+FP M A + Sbjct: 284 HVTRQVQEYAVRAFAALDCAGLARVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAAS 342 Query: 282 GYSFRELLLWMVEDA 296 G + +L+ ++ A Sbjct: 343 GLEYPKLVNRLIRTA 357 >gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] Length = 315 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 10/287 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ER+VSL+S + L D G++ +D D+AFN+ HG Sbjct: 12 IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWERLE-DADIAFNIQHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG+ Q +L + + T S +L SAL+MDK+RSKQ+ S G+P +V+ T D+ Sbjct: 71 VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHT-DA 129 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L+S IKP GSSLG+ + D ++ +G+ +L E+++DG E T Sbjct: 130 AALLSEWGAAFIKPSAEGSSLGMSRV--DSVDGFKAACEAAAVYGEGILAEEFIDGPEYT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L I + +FY YE KY ++ + +P + + + RLA A A+ Sbjct: 188 VAILGDRALPPIRIEASR-EFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAAL 246 Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYS 284 GC R D + + R F LE+N PGMT S+ P A AG S Sbjct: 247 GCSIWGRVDLMRN--RRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 335 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G++V + DVD S+ + +PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117 GEDG +Q+ LE + +P+ S + + L+ +K +K ++ S GV P + + Sbjct: 67 GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126 Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + +S P VIKP GGS+LGI + ++ ++ +G +L++EQ + Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAMVD--AFAYGQRLMVEQRI 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ++ V+ G +L EI+ Y Y+ +Y++ + + +PA+ +I ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEIST-DGGRYDYDARYTTDETEYFVPARFSDEILADLQ 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRE 287 A AH +G R +SR DF+ D + ++++ NV PGMT S+ P+ A A+ SF + Sbjct: 244 AAAVEAHTTLGLRDLSRIDFVVDD-AGTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQ 302 Query: 288 L 288 L Sbjct: 303 L 303 >gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 311 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ ++V I++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+++ + G+ + R M + Sbjct: 63 AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLER-AMFA 121 Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 P P +KP GGSS+G+ + + + + L ++ W G+ +L+E V Sbjct: 122 DGTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVS 179 Query: 174 GIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E+TC ++ L V I A ++++ YE KYS P +P D V+ A Sbjct: 180 GQEITCPILDGELLPVLGIRAANGAEWFDYEAKYSD-GGAEEKPITLPPDEETRVRAAAL 238 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL + Sbjct: 239 ACYRLLQCRVYARVDMILK--DGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRI 296 Query: 293 VE 294 +E Sbjct: 297 IE 298 >gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 329 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 175/328 (53%), Gaps = 41/328 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG S E VSL SG+ +L+ + V ++ V D Sbjct: 8 VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67 Query: 41 SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV L L+ D+ FN++HG GE+G++QA + + YT G SAL+ +K + V Sbjct: 68 SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127 Query: 100 VSSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P SI + + ++ ++S P +KP + GSSLGI +K+ +L+ Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKS----ELI 183 Query: 156 QSS--SWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSL 209 ++ ++ D++LIE +++G+E++ GV+ G+ L +TEI VP ++F+ YE KY Sbjct: 184 AATEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEI-VPTNEFFDYEAKYEGA 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF-LFDPLSRKVFWLEINVQPGM 268 S + PA+I + K V+ +A A+ ++G G SRS++ L D + + LE+N PG Sbjct: 243 -SEEITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYILMDGIP---YMLEMNTNPGF 298 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +P SI P+ A + G S +L VE A Sbjct: 299 SPASILPQQAKHYGISIMDLCGNEVEKA 326 >gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] Length = 385 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 34/282 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG +GEDG +Q +LE++ IPY G+ ASA MDK +K ++S G+ Sbjct: 105 LGHI--DAVFPVLHGPYGEDGTIQGLLEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGI 162 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI--KKD 147 V P I ++ F D + L+ P +KP + GSS G+ + +D Sbjct: 163 QVAPGITLDTRSYHRDSHFVADGESLLQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQD 222 Query: 148 QSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 +S+ ++ L ++ + NH ++LIEQ +DG E+ C V+ + E ++P Sbjct: 223 KSLLMNRLSAAVFEAANHDWRVLIEQGIDGREIECAVLAARPGSLPETSLPGEVVLDAPD 282 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY ++HV +PA +P + ++V++ A A A+ +G+SR D F Sbjct: 283 DDTFYDFDSKYMDSQASHVEVPAHLPQKLLEKVRQTAGQAFLAVDGQGLSRVD-TFVTAD 341 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG TP+S++ + G S+REL+ +++ A Sbjct: 342 GQVLVNEINTMPGFTPISMYAKAWEAMGLSYRELISRLIDGA 383 >gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424] gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424] Length = 352 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 170/343 (49%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGL---------VLA 47 + +L GG S E EVS++S KA A+AL A ++ D+ R G VL Sbjct: 6 VGLLFGGRSGEHEVSINSAKAIATAL-SASENATKYDILPVYIRKDGCWQAPDVAQQVLE 64 Query: 48 HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P D+ F +LHG GEDG +Q +L L+++PY SG+L Sbjct: 65 SAQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134 SA+ MDK+ K V + G+P + ++R + S I P P +KP Sbjct: 125 SAVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191 GSS+GI ++ + L Q++S++ ++++E V E+ C V+G+ + V E Sbjct: 185 LGSSVGIAKVRSRSELEKALDQAASYDR--RIIVEAGVIAREVECAVLGNDNPKASVVGE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I SDFY YE KY+ + ++PA +P I ++Q ++ A A+ G++R DF + Sbjct: 243 ITF-NSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYV 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ EIN PG T S++P++ A G SF +L+ ++E Sbjct: 302 EKTGEILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIE 344 >gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] Length = 363 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG S E EVSL S + ++ F V+ I VD+ Sbjct: 6 VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65 Query: 42 -------------VGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 G + KP +L F VLHG FGEDG VQ +LEL ++PY +G+L Sbjct: 66 VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLK 134 S+L MDK K++ G+PV P + + S P +KP + Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191 GSS+G+ + ++ + + + S++ D+LLIE V E+ C V+G+ L E Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSFD--DKLLIEPAVQAKEIECSVIGNQELTTFAPGE 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I VP DFY Y+ KY + ++L P+ + + K V++++ A++ G +R D + Sbjct: 244 I-VPSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFY 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + KV EIN PG T +S+FP++ G ++ ELL +++ Sbjct: 303 EEATGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLD 346 >gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] Length = 401 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/363 (30%), Positives = 165/363 (45%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +AV+ GG SSE +S+ + A SAL+ + V I Sbjct: 35 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94 Query: 37 --DVDR----SVGLVLAHLKP--------------------DLAFNVLHGNFGEDGLVQA 70 DVDR + G V + P D+ F +LHG +GEDG +Q Sbjct: 95 VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126 LEL +PY +G+LASA+ DK K+V +S G+PV P +V +S + Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214 Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI K D LD + H + L+E + G E+ Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGI--TKVDDPSGLDEAIEEARRHDPKFLVESLLRGREIE 272 Query: 179 CGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EV+RLA Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SAAGLVPAPLTEEQTAEVRRLAVD 331 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF V EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 332 AFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390 Query: 294 EDA 296 + A Sbjct: 391 QAA 393 >gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 326 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 24/313 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 18 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117 GEDG ++ +L+L ++PY AS + DK +K V+ +P + + +RF+ Sbjct: 78 GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V++ ++P ++ +++ L+E Sbjct: 138 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDSAALPAAMVGCFAYDS--TALVE 192 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +Y+ G ++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ + Sbjct: 193 RYLSGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLTSEVAE 251 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V LA AH A+G R +SR D + D + L +NV PGMT S+ P A AG F Sbjct: 252 AVAGLAVAAHTALGLRDLSRVDLIVD-ADGQPHVLGVNVAPGMTETSLLPLAAQAAGLDF 310 Query: 286 RELLLWMVEDASC 298 ++ +V A+ Sbjct: 311 GRMIGTLVSQAAA 323 >gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101] gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101] Length = 323 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA---GFKV--------------SQIDVDR--- 40 +A++MGG SSE ++SL SG L+ GF++ ++ +DR Sbjct: 4 IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDGL+QA EL+ +P + SAL+ +K V+ Sbjct: 64 SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ T + + P +KP K GSS GI +K + +P+ + Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELPIAI-- 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE ++DG E++ GV+ L +TEI V +DF+ YE KY S Sbjct: 182 EVAYKEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEI-VSDNDFFDYEAKYEG-KSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ ++V A A++ + +G SRS+F+ + + + LE+N PG+T S Sbjct: 240 EITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S +L +E Sbjct: 298 LIPQQAKAAGISLEDLFTNAIE 319 >gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] Length = 361 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35 + ++ GG SSE EVS+ SG+ A++ + GF S Q Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 36 IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 I+ R+V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF D+ +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I K V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346 >gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] Length = 350 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 160/343 (46%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50 VL GG+S+ER+VSL+S L + G +DV + HL+ Sbjct: 5 VLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGLEI 64 Query: 51 --------PDLA----------------------------FNVLHGNFGEDGLVQAILEL 74 PDLA F LHG GE+G +QA +L Sbjct: 65 AKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131 L I YT L A++MDK +KQV G+ + +++ + D +S P VIK Sbjct: 125 LGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVVIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ ++ L S+ + D++++E+Y+ G E CGV+ + +L E Sbjct: 185 PCSGGSSIGVYIVSTEEEYAEAL--EKSFFYEDEVVVEEYIKGREFACGVIDNEALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY + + V PA IP + + L A +A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFLLD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE+N PGMT S+ P+ A AG + +L +++ Sbjct: 302 E-KGNLYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIK 343 >gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 366 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65 Query: 40 --------RSVGL----------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 R+V L VLA L D+ F ++HG GEDG +Q +L + Sbjct: 66 LISLNHSNRNVALIPGQENQQLIAADNAAVLAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 IP+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--L 187 IKP GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ S Sbjct: 184 IKPANQGSSVGVSKVRNAAEYQQAVALAFDFDH--KVLVESAIVGREIECAVMGNDSPQA 241 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V V +FYSY+ KY + + V +PA I D ++ +A A A+ CRG++R Sbjct: 242 SVCGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARV 301 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P V EIN PG T +S++P++ G EL+ ++E Sbjct: 302 DVFLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIE 348 >gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 285 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 34/303 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 G++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 R---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 103 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 104 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 161 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 162 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 220 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 221 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279 Query: 292 MVE 294 ++E Sbjct: 280 ILE 282 >gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] Length = 345 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 22/265 (8%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + ++ + VLHG +GEDG +Q +LEL E+PY +L S+++MDK+ +K+++ + G+P Sbjct: 78 QQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTKKILETVGIPQVK 137 Query: 110 SILVNRF----------TMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIP 151 S+ V + T D I+ P IK GSS+G + +++ + Sbjct: 138 SLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSVGCYRVDEEKELM 197 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSL 209 L +++ ++ +++IE+ VD IEL V+G+ V+ + +P FY++E KY Sbjct: 198 PRLEEAAQYDR--KIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHGVFYTFESKYEDE 255 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S +PA + I +E++ A +AI G+SR DF D + KV+ EIN PG T Sbjct: 256 ESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKVYLNEINTMPGFT 315 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 +S++P++ A G ++ +L+ ++E Sbjct: 316 KISMYPQLMADFGITYSDLIDKLIE 340 >gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] Length = 368 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY G+LASA MDK +K+++++ Sbjct: 99 GAVLASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKKLLAA 156 Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+PV +++ T + + + P +KP +GGSS+GI + LD + Sbjct: 157 EGLPVGVQVVLRPGTATLTEEQKAELGLPVFVKPARGGSSIGITRVSNWDG--LDGAIAH 214 Query: 159 SWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYELKYSS 208 + H ++++E + G E+ CGV+ GD V EI +P SD FY ++ KY Sbjct: 215 ARLHDPKVIVEGAIIGREVECGVLEFPNGDVKASVVAEIRMPDSDADSDAFYDFDTKYLD 274 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PAK+ + +++ LA A +A+ C+G+SR DF + EIN PG Sbjct: 275 DVCEFDIPAKLDESVSDQIRELAVRAFKALDCQGLSRVDFFV--TADGPVINEINTMPGF 332 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P+M G +R L+ +V+ A Sbjct: 333 TSISMYPKMWNATGIDYRTLISTLVDTA 360 >gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702] Length = 365 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ +LEL +PY +G+LASA MDK +K + + GVPV + Sbjct: 110 DVIFPVLHGRNGEDGTVQGVLELSNVPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEV 169 Query: 112 LVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ T + + +I P +KP +GGSS+GI K LD ++ ++ H ++L+ Sbjct: 170 VLTERRDLTDEEKEMIGLPVFVKPARGGSSVGI--SKVSDWADLDAAEAHAFEHDTKILV 227 Query: 169 EQYVDGIELTCGVMG--DASLDVTEIAVPKSD------FYSYELKYSSLNSTHVLPAKIP 220 E + G+E+ CGV+ D ++ ++ ++ + FY ++ KY ++ +PA +P Sbjct: 228 EAMLHGVEVECGVLQYPDGTVHASQPSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLP 287 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 V+R A +A+ C G++R DF E N PG TP+S++P+M Sbjct: 288 EGQADAVRRWAVETFRALDCEGLARVDFFV--TEDGPVLNEPNTMPGFTPISMYPKMFEA 345 Query: 281 AGYSFRELL 289 G ++ ELL Sbjct: 346 TGVAYTELL 354 >gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] Length = 333 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VSL S + S + + V +D+ D V L + P Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+GL+Q ELL IPY+ SG+L AL+ +K Q + Sbjct: 68 SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 GV V SILV R D + I P+ +KP GSS G+ +K DQ P Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAP-- 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209 +++ D+++IE Y+ G E++ G L TE+ V ++F+ Y+ KY+ Sbjct: 186 -ALRNAFMESDEVMIESYLKGTEISIGCYKTREKSVVLPATEV-VTSNEFFDYDAKYNG- 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQP 266 + PA++ + + V+++ + + C GI R D++ + + K+ LE+N P Sbjct: 243 QVQEITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTP 302 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ AG + E+L +VE+ Sbjct: 303 GMTATSFIPQQIRAAGLNITEVLTEIVEN 331 >gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 286 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 143/256 (55%), Gaps = 20/256 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK +K+V+ G+ V P + Sbjct: 18 DVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFV 77 Query: 112 LVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 NR T D LI+ P +KP GSS+G+ + + L + S++H + Sbjct: 78 CFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSADAFAAALALALSYDH--K 135 Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +L+E + G E+ C V+G+A+ + E+ V + FYSYE KY S + ++ IP D Sbjct: 136 VLVEAAIVGREIECAVLGNATPQASVCGEVVVHDA-FYSYETKYISAHGADIV---IPAD 191 Query: 223 IY----KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IY + +Q++A A+QA+ C G++R D R V E+N PG T +S++P++ Sbjct: 192 IYAHTQQRIQQIAVQAYQALDCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLW 250 Query: 279 AYAGYSFRELLLWMVE 294 +G +R L+ ++E Sbjct: 251 QASGLDYRSLITQLIE 266 >gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] Length = 324 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 164/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE VSL S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + F + + +I+ P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++ G E+TCG + +V TE+ V ++F+ Y KY+ S Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P DI + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 353 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 60/350 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------VGLVLA 47 +AV+ GG S+E VS S A + L+ F+V I + R V V+ Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 48 HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 + P D+ F +LHG FGEDG +Q + EL +PY Sbjct: 67 EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P +++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEI 192 SS+G+ + + P +DL + +++L+E + G E+ GV+ D +L + Sbjct: 187 SSIGVSKVNSWEEFPAAVDL----ALEDDEKILVEPEIVGQEVEIGVLHYADGTLLASVP 242 Query: 193 A----VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 A + SD FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR Sbjct: 243 ALLAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 303 DFFV--TEESVYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQA 350 >gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] Length = 301 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 155/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 + V+MGGISSEREVSL+SGK+ SA+ + V ++ +D + +V + D A +LH Sbjct: 5 VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G +GEDG +QA+LE + I Y+ L S + MDK SK+V+ + +P P + ++ Sbjct: 65 GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D+ + P IKP GGSS+ + + + + + Q + D ++IE Y+ G E Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGLEVD--DIVMIEGYLPGDE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ +I+ P ++F+ YE KY++ + + ++ E+ + Sbjct: 183 YTSFILNGEVFPTIKISSP-NEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECW 241 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A CR R DF+ + K + LE+N PGMT S+ P A G S+ EL+ ++E Sbjct: 242 DAFNCRAFVRVDFILS--NGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298 >gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4] gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4] Length = 325 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/323 (27%), Positives = 164/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42 +A++ GG SSE VSL S S ++ + + +I +D++ Sbjct: 5 IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + +K D A+ +HG GE+G++Q EL+ +PY+ G+LA+A++ +K Q + Sbjct: 65 SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+++ S ++ P +KP GGSS G+ +K + + + Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ GD+++IE ++ G E+TCG+ + L +TE+ VPK++F+ ++ KY Sbjct: 183 EKAFTEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEV-VPKNEFFDFDAKYKG-EVE 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + + VQ+L + +GC+GI R D++ + LE+N PGMT S Sbjct: 241 EITPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG ++++ ++E+ Sbjct: 300 FIPQQVAAAGLDIKDVMTEIIEN 322 >gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88] gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 358 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 140/260 (53%), Gaps = 12/260 (4%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 VL + + +L F VLHG +GEDG +Q + +L+ +P G+L+SAL MDK+ +K V+ + Sbjct: 95 VLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIYTKYVLENFK 154 Query: 105 VPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 ++VN+F + + IKP GSS+GI + + L Sbjct: 155 FKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNKEELLKGL-- 212 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 ++ H +L+E+ ++ E+ V+G D V +P +FY YE KY + NS + Sbjct: 213 EEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAKYQNENSELL 272 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA I +E++ LA ++ +GC G++R DFL D S +V++ E+N PG T +S++ Sbjct: 273 IPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTLPGFTKISMY 332 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P++ +G S+ L+ ++E Sbjct: 333 PKLWEASGKSYSALIDELIE 352 >gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 360 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 161/340 (47%), Gaps = 58/340 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------------ 38 V+ GG S E EVSL S + AL+ +++ + + Sbjct: 8 VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67 Query: 39 -DRSVGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D V LV P DL F VLHG GEDG +Q + E+ +PY Sbjct: 68 HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKP 132 SG+L AL MDK R K V + G+P+ P I V + +D+ +S P +KP Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190 GSS+GI + ++ + L +++++ D+++IEQ V E+ V+G+ + T Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAAAYD--DKVVIEQGVKAREIELAVLGNETPQATVP 245 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +P +FY YE KY +S ++PA++ ++Q A QA+ G+ R DF Sbjct: 246 GEI-IPCKEFYDYEAKYID-DSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDF- 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F + ++F EIN PG T +S++P++ G S+ ELL Sbjct: 303 FVTDTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELL 342 >gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] Length = 321 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 12/247 (4%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F +LHG GEDG +Q LE+L PY +G+ SAL MDK SK+V++ G+PV P + + Sbjct: 80 FPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVALY 139 Query: 115 RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 R L+ PP+ +KP GSS+GI +++ L+ ++ H + ++E+ + Sbjct: 140 R---GETPLVPFEPPFFVKPANTGSSIGISRVERYAD--LEEALEEAFRHDRKAVVEKAL 194 Query: 173 DGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+ EL GV+G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 195 SGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTEETVQE 254 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A++ +G RG++R DF +++ E+N PG TP S+FP + G ++ ELL Sbjct: 255 MALKAYKVLGLRGMARVDFFLA--EGELYLNEVNTIPGFTPTSMFPRLFLAKGLTYPELL 312 Query: 290 LWMVEDA 296 +VE A Sbjct: 313 RRLVELA 319 >gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] Length = 346 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 148/281 (52%), Gaps = 25/281 (8%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 + ++V+ L+ H D+AF VLHG +GEDG +Q + EL +IPY + +L S++SMDK Sbjct: 66 NSVEVENVFELLKEH---DVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDK 122 Query: 94 MRSKQVVSSCGVPVCPSILVNR--------FTMDSQHL----------ISPPYVIKPLKG 135 + +K+++ + +P S V + T D + + I P IK + Sbjct: 123 IYTKKILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRS 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193 GSSLG + + L ++ ++ +++E+ +D IEL V+G+ + V+ + Sbjct: 183 GSSLGCYRCDNREDLIGKLEAAAKYDR--HIVVEENIDCIELETAVLGNDDVIVSRVGQI 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FY++E KY S +PA + I ++++ A A +A+ G+SR DF D Sbjct: 241 MPHGEFYTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKK 300 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ EIN PG T +S++P++ G S+ +LL ++E Sbjct: 301 TNNIYLNEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIE 341 >gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 367 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 40 --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + +R T D LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A V Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 304 FLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRGLITRLIE 348 >gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] Length = 356 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/332 (29%), Positives = 166/332 (50%), Gaps = 47/332 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AV+ GG SSE VS + + +AL+ + V I + Sbjct: 14 LAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLP 73 Query: 40 --RSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 R+ G V A + D F +LHG +GEDG VQ +LE+ +I Y +G+LASA+SMDK Sbjct: 74 AVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKP 133 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKK 146 +K V S+ G+P P + + + + + + P +KP + GSS G+ +++ Sbjct: 134 FTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVES 193 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD------ASL--DVTEIAVPKS 197 + ++ + +++ ++++E + G EL CGV+ AS+ ++T A Sbjct: 194 WDDLDAAVVAARAFDP--KVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDH 251 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY +E KY S +++PA IP+ + + ++ A A +A+GC G++R DF V Sbjct: 252 DFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLTDDGLVV 311 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 EIN PG TP S+FP + +G + +L+ Sbjct: 312 N--EINTMPGFTPFSMFPLLWEASGVRYEDLV 341 >gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895] gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895] Length = 371 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ A F V + +D+ + +L A Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R D+ + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA+IP ++ +++++A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVD- 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 309 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 354 >gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] Length = 351 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/340 (28%), Positives = 163/340 (47%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF----KVSQIDVDR 40 + +L GG S E EVS+ S + A+AL + GF +V+Q + Sbjct: 6 VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65 Query: 41 SVG-------LVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V L P DL F +LHG GEDG +QA+L L+++P+ SG+L SA Sbjct: 66 GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136 MDK+ K + G+P + R + S + P PY +KP G Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--V 194 SS+GI ++ Q + L +++++ ++++E V E+ C V+G+ + + I Sbjct: 186 SSVGIAKVQSRQELEAALDNAATYDR--RIIVEAGVVAREVECAVLGNDNPKASVIGEIT 243 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ + +PA +P +++Q A A A+ G++R DF + + Sbjct: 244 FDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEAT 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ EIN PG T S++P++ A G SF +L+ +++ Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQ 343 >gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] Length = 368 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 145/268 (54%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY G+LASA MDK +K+++++ Sbjct: 99 GAVLASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKKLLAA 156 Query: 103 CGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+PV ++ + T + + + P +KP +GGSS+GI + LD + Sbjct: 157 EGLPVGVQVVLRPGIATLTEEQKAELGLPVFVKPARGGSSIGITRVSNWDG--LDGAIAH 214 Query: 159 SWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYELKYSS 208 + H ++++E + G E+ CGV+ GD V EI +P +D FY ++ KY Sbjct: 215 ARLHDPKVIVEGAIIGREVECGVLEFPNGDVKASVVAEIRMPDADTDSDAFYDFDTKYLD 274 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PAK+ + +++ LA A +A+ C+G+SR DF + EIN PG Sbjct: 275 DVCEFDIPAKLDESVSDQIRELAVRAFKALDCQGLSRVDFFV--TADGPVINEINTMPGF 332 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P+M G +R L+ +V+ A Sbjct: 333 TSISMYPKMWNATGIDYRTLISTLVDTA 360 >gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis] Length = 349 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 160/340 (47%), Gaps = 56/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +A++ GG S+E EVSL S A + F + I + Sbjct: 6 IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65 Query: 39 -------------DRSVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +RSV + +K DL F VLHG GEDG +Q + EL IP Sbjct: 66 EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKP 132 L+SAL MDK ++ ++VS G+ V P + +F+ L +S P +KP Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISV-PKSVTFKFSGKKAALKKIEKELSYPLFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DV 189 ++ GSS GI + K Q L+ ++ H ++++E+ ++G E+ C V+G L V Sbjct: 185 VRAGSSFGITKVTKQQE--LENAIQLAFEHDAEVIVEETINGFEVGCAVLGIDELIVGRV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D Sbjct: 243 DEIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMF 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + P S ++ + E+N PG T S +P M G SF ++L Sbjct: 302 YTP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQML 340 >gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 308 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG Sbjct: 1 MLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGE 60 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119 GE+G VQ++L++ IPY + A + DK +K ++ G+ +++ T + Sbjct: 61 GENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELG 120 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +Q ++ P ++KP +GGS+LG V++ +P ++ + S+ GD +L+E+Y+ Sbjct: 121 AQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALSY--GDTVLVEKYI 178 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ GV+ G +L +I + Y Y +Y++ +T+ PA++ + Sbjct: 179 EGTEVAIGVLDGPDGPEALPAVQIEA-TNGVYDYTARYTAGLTTYRTPAELSPETAAAAG 237 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S ++ Sbjct: 238 DLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDV 296 Query: 289 LLWMVEDA 296 +VE A Sbjct: 297 FATLVERA 304 >gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 314 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ +AL AG V + D D + L +PD LHG Sbjct: 6 VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-----PVCPSI---- 111 GE+G VQ ILEL +P+ + A + DK +K +S G+ V P Sbjct: 66 GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125 Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L R +DS + P ++KP +GGS+LG V++ +P ++ ++ GD +L E+ Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAMVGCLAY--GDTVLAER 183 Query: 171 YVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +V+G+E+ G G +L EI VP+S Y Y +Y++ + PA++ K Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEI-VPESGVYDYTSRYTAGLTDFHAPARLDEATAKA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V LA AH+ +G R +SR+D + +P V +LE+NV PG+T S P AG S Sbjct: 243 VGELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLG 301 Query: 287 ELLLWMVEDA 296 E+ ++E A Sbjct: 302 EIYAALIERA 311 >gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1] gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 355 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 39/332 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + +L GG S E +VSL + ++ +A+ F V I +V L Sbjct: 13 LGILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNEL 72 Query: 45 VLAHLKPDLA---------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 P LA F +LHG GEDG VQ +LELL +PY +G+LASA+ MDK+ Sbjct: 73 AFQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVV 132 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKK 146 KQ+ + G+ + + + Q I P +KP GSS+GI K Sbjct: 133 MKQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYEL 204 + + ++ ++ ++++E+ + G E+ GV+G+ V VPK +FY YE Sbjct: 193 REQLQTAFQEAFRYDR--KVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY N+ +PA + Y+ ++++A A + + G+ R+DF F +V+ E+N Sbjct: 251 KYVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADF-FLTADGEVYINEVNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP S+FP + + G + EL+ +++ A Sbjct: 310 MPGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341 >gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] Length = 315 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 158/302 (52%), Gaps = 23/302 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ERE+SL SG AL G + ID D R +G A + D AF LH Sbjct: 17 VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLG---ALGEFDRAFIALH 73 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG++Q LE++ +PYT +G+L SAL MDK+R+K V + G+P P+ L +D Sbjct: 74 GRGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPT-PAFL----RLD 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 S+ + P ++KP + GSSLG+ + ++ ++ ++ ++ E+++ Sbjct: 129 SEAALDRVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEAWRKACRYDR--EVFAERWI 186 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T ++G+ +L V I FY ++ KY + + P + + LA Sbjct: 187 DGQEYTVSLLGEQALPVIRIE-SAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAA 245 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+G G R D L D + V W LE+N PGMT S+ P A AG E L+W Sbjct: 246 AAFEAVGGSGWGRVDLLRD--AEGVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDE-LVW 302 Query: 292 MV 293 + Sbjct: 303 RI 304 >gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] Length = 380 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 37/281 (13%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG GEDG +Q +LE++++PY G+LASA MDK +KQ+ + G+ Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158 Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147 V P I + NRF ++ +++ P +KP + GSS G+ ++ Sbjct: 159 DVAPGIALDARKFASDAENRFDAYAEEILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESR 218 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------------GDASLDVTEIAV 194 + L + H ++L+EQ +D E+ C V+ G+ LD E Sbjct: 219 DAKALAEAIFEASEHDWRVLVEQGIDAREIECAVLAARDGEEPKASWPGEVVLDKREAG- 277 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + FY ++ KY ++HV +PA +P + + V++ A A +A RG+SR D Sbjct: 278 -EDQFYDFDSKYMDSAASHVEVPANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD 336 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 337 GR-VILNEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376 >gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] Length = 390 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 135/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG Q +LEL IPY SG+LASA+ DK K+V +S G+PV P + Sbjct: 125 DVVFPVLHGPYGEDGTFQGLLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYL 184 Query: 112 LVN------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ +D P +KP +GGSS+GI K D LD + + Sbjct: 185 VIRPREWDADEAAARARVIDFAGEHGWPLFVKPARGGSSVGI--TKVDGPEGLDAALAEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++L+E + G E+ CGV+ AS+ V DFY +E KY ++ + Sbjct: 243 RRHDPKVLVESLLRGREIECGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKYID-SAPGL 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EVQRLA A +A C G+ R+DF V EIN PG TP+S++ Sbjct: 302 VPAPLTEEQTAEVQRLAVEAFEAASCEGLVRADFFLTEDGGFVI-NEINTMPGFTPISMY 360 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G + L+ +V+ A Sbjct: 361 PRMWQESGVDYPALVDQLVQAA 382 >gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104] gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104] Length = 369 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 20/260 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+ ASA MDK +K++ ++ G+P+ Sbjct: 107 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYA 166 Query: 112 LV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQL 166 ++ + ++ + + P +KP +GGSS+G+ + D+ LD +++ +H ++ Sbjct: 167 VLRPSQSTLSLQDRERLGLPVFVKPARGGSSIGVSRVSSWDE---LDAAVAAARDHDPKV 223 Query: 167 LIEQYVDGIELTCGV--MGDASLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLP 216 ++E + G EL CGV M D ++ V EI V + FY + KY + +P Sbjct: 224 IVEAAIAGRELECGVLEMPDGTVQASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVP 283 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+ +I V+ LA A +A+ C+G++R DF EIN PG T +S++P Sbjct: 284 AKVDDEIADAVRELAIRAFKAVDCQGLARVDFFL--TETGPVLNEINTMPGFTTISMYPR 341 Query: 277 MAAYAGYSFRELLLWMVEDA 296 M A +G + LL MVE A Sbjct: 342 MWAASGVDYPSLLATMVETA 361 >gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 350 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44 VL GG+S+ER+VSLSS L + G +DV D + + Sbjct: 5 VLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGLEI 64 Query: 45 V--LAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74 V ++ +PDL F LHG GE+G +QA +L Sbjct: 65 VKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131 L+I YT L A++M K +KQ+ GV P +I N Q L ++ P V+K Sbjct: 125 LDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ D+ L S+++ D+L++E Y+ G E CG++ +L E Sbjct: 185 PCSGGSSIGVYIVNTDEEYAEAL--KKSFHYEDELVVEPYIKGREFACGIIDGTALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFLLD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F LE+N PGMT S+ P+ A G + +L +++ Sbjct: 302 A-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIK 343 >gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 353 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 60/350 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------VGLVLA 47 +AV+ GG S+E VS S A + L+ F+V I + R V V+ Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 48 HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 + P D+ F +LHG FGEDG VQ + EL +PY Sbjct: 67 EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P +++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEI 192 SS+G+ + + P +DL + +++L+E + G E+ GV+ D +L + Sbjct: 187 SSIGVSKVTTWEEFPAAVDL----ALEDDEKILVEPEIVGKEVEIGVLHYADGTLLASVP 242 Query: 193 A----VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 A + SD FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR Sbjct: 243 ALLAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 303 DFFV--TKDSVYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQA 350 >gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium ATCC 25291] gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 369 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 20/260 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+ ASA MDK +K++ ++ G+P+ Sbjct: 107 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYA 166 Query: 112 LV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQL 166 ++ + ++ + + P +KP +GGSS+G+ + D+ LD +++ +H ++ Sbjct: 167 VLRPSQSTLSLQDRERLGLPVFVKPARGGSSIGVSRVSSWDE---LDAAVAAARDHDPKV 223 Query: 167 LIEQYVDGIELTCGV--MGDASLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLP 216 ++E + G EL CGV M D ++ V EI V + FY + KY + +P Sbjct: 224 IVEAAIAGRELECGVLEMPDGTVQASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVP 283 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+ +I V+ LA A +A+ C+G++R DF EIN PG T +S++P Sbjct: 284 AKVDDEIADAVRELAIRAFKAVDCQGLARVDFFL--TETGPVLNEINTMPGFTTISMYPR 341 Query: 277 MAAYAGYSFRELLLWMVEDA 296 M A +G + LL MVE A Sbjct: 342 MWAASGVDYPSLLATMVETA 361 >gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 154/307 (50%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A AL A DVD ++ L PD LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119 GEDG ++++L+L+ IPY A+ + DK +K ++ G+P I + R T + Sbjct: 69 GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + L+ P +KP +GGS LG+ V++ + +P ++ + +GD L+E + Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAMI--GCFAYGDVALVEAFA 186 Query: 173 DGIELTCGVM--GDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ++ GV+ GD + + P D Y + +Y+ ST +PA++ + ++V Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIEPSGDAYDFAARYNPGASTWHVPARLAPRVSEDVAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A + +G R +SR D + P + LE V PGMT S+ P AG+ EL+ Sbjct: 247 VATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGELM 305 Query: 290 LWMVEDA 296 +V+ A Sbjct: 306 AGLVDRA 312 >gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 10/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSER VSL SG+ L ++V I +D +V D AF LHG Sbjct: 3 VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 FGEDG +Q ILE LEIPY+ +L SA+ M+K +K ++ + + P I V +D Sbjct: 63 KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122 Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + S P IKP GGSS+ +K + + + + ++ +++IE+Y+ G E+ Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAVKEGLKYD--TEVMIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I S F+ Y KY N + + +V ++ Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDD-NGAEENVVYLKEQLQSQVAEISKKIWDL 239 Query: 238 IGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + CR SR D + +S + + LE+N PG+TP S+ P+ A G F ELL Sbjct: 240 LYCRSYSRVDMI---ISNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELL 289 >gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] Length = 372 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/354 (29%), Positives = 178/354 (50%), Gaps = 65/354 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + +L GG S E E+SL S ++ A++ + V ++ Sbjct: 8 VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67 Query: 37 --DVDRSVGLVLAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ GL +A D+ F VLHG FGEDG +Q + EL +I Y SG+L Sbjct: 68 SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPLKGGS 137 S+ MDK K++ + G+P+ P ++L + + D+ + + P +KP GS Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187 Query: 138 SLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVT 190 S+GI +K D ++ +DL ++S++ +++IEQ V G EL V+G+ + + + Sbjct: 188 SVGISKVKSRADLAVAMDL--AASFDR--KIVIEQGVGGPGVKPRELEVAVLGNDTPEAS 243 Query: 191 EIA--VPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + VP +FY YE KY LN S ++PAK+ K+++ +A A +A C G++ Sbjct: 244 VVGEIVPAKEFYDYEAKY-ELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLA 302 Query: 245 RSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R DFL P S+ ++ EIN PG T +S++P++ +G ++ +L+ ++E Sbjct: 303 RVDFLMAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIE 356 >gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] Length = 380 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 37/281 (13%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG GEDG +Q +LE++++PY G+LASA MDK +KQ+ + G+ Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158 Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147 V P I + NRF ++ +++ P +KP + GSS G+ ++ Sbjct: 159 NVAPGIALDARKFASDAKNRFDAYAEEILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESR 218 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------------GDASLDVTEIAV 194 + L + H ++L+EQ +D E+ C V+ G+ LD E Sbjct: 219 DAKALAEAIFEASEHDWRVLVEQGIDAREIECAVLAARDGEEPKASWPGEVVLDKREAG- 277 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + FY ++ KY ++HV +PA +P + + V++ A A +A RG+SR D Sbjct: 278 -EDQFYDFDSKYMDSAASHVEVPANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD 336 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 337 GR-VILNEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376 >gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] Length = 353 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 106/342 (30%), Positives = 165/342 (48%), Gaps = 50/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLV--LAHLKP----- 51 + VLMGG SSE +VSL S K ++ + V + + D LV L HL+ Sbjct: 6 IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDS-----QHLISPPYVIKPLK 134 G+LASA SMDK +K VV S GV + V R MD + + P +KP K Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS G+ + + + +D L ++ H ++L+E+ + G E+ CGV+G + + Sbjct: 186 AGSSQGVSKAENREEL-IDALNLAA-KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +FYSY+ KY++ S V+ ++P +E+++ A +A+ C G+SR DF Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V + EIN PG T +S++P + G S + L+ +++ Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLID 345 >gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] Length = 391 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K+V S G+PV P Sbjct: 126 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYE 185 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 +V D+ + P IKP +GGSS+GI K D LD + Sbjct: 186 VVRPREWDNDPAAARERIVDFAGEHGWPLFIKPARGGSSMGI--TKVDSVEGLDAAIEEA 243 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + L+E + G E+ CGV+ AS+ V DFY +E KY ++ + Sbjct: 244 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYID-SAAGL 302 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EV+RLA A A+ C G+ R+DF V EIN PG TP+S++ Sbjct: 303 VPAPLTEEQTAEVRRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 361 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G + EL+ +++ A Sbjct: 362 PRMWQESGVDYPELVDRLIQAA 383 >gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron VPI-5482] gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] Length = 324 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40 +A++ GG +SE VSL S + S ++ + + ++ VDR Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E +++G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 365 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65 Query: 42 ----------VGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77 V L+ + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130 + SG+L SA+SMDK +K+++ G+ V P + + R F SQ L P I Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQL-GLPLFI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188 KP GSS+G+ + + L ++ S++H ++L+E + G E+ C V+G+ Sbjct: 185 KPANQGSSVGVSKVSDEDGYQRALDKAFSFDH--KVLVESAIKGREIECAVLGNDHPQAS 242 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V + +FYSY+ KY + + + +PA +P + + ++ +A A Q + CRG++R D Sbjct: 243 VCGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F V EIN PG T +S++P++ A +G S+ EL+ ++E Sbjct: 303 -VFLTEQGDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIE 348 >gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 366 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 71/354 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 41 ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 +V L+ LA L D+ F ++HG GEDG +Q +L + Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 IP+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 IKP GSS+G+ ++ +Q++ L +++ ++L+E + G E+ C VMG+ Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237 Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ASL E+ + +FYSY+ KY + + ++PA I + ++ +A A +A+ C Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALEC 295 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG++R D P +R V EIN PG T +S++P++ G EL+ ++E Sbjct: 296 RGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 348 >gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] Length = 327 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 106/324 (32%), Positives = 161/324 (49%), Gaps = 36/324 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG L+ ++ +I + D Sbjct: 5 VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDGL+QA ELL IP T G +AL+ +K V+ Sbjct: 65 SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGI-IVIKKDQSIPLDLL 155 G+ PS +N ++ I P +K K GSS GI V +KD+ L Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDR---LKEA 181 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D+++IE ++DG E++ GV+ G+ L +TEI V ++DF+ YE KY S Sbjct: 182 IEFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEI-VTENDFFDYEAKYEG-KS 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I K V + A A+ + G SRS+F+F + + F LE+N PG+T Sbjct: 240 QEITPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTE 297 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 SI P+ A AG S EL +E+ Sbjct: 298 SILPQQAGEAGISLSELFGGAIEE 321 >gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] Length = 301 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L G +SE++VS+ +G + L+ +++ I ++ + L+ D A LHG + Sbjct: 2 LLWAGYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKY 61 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + +D Sbjct: 62 GEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLD 121 Query: 120 SQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+KP GGSS+G+ IV K++ I + L W+ +++IE+Y+ G E+T Sbjct: 122 ELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDEIT 178 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C ++ L + I ++F+ Y KY ++ + ++P I + V + + ++A+ Sbjct: 179 CSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKAL 236 Query: 239 GCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C +R D + D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 237 KCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 293 Query: 298 CLR 300 +R Sbjct: 294 KVR 296 >gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] Length = 361 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 168/343 (48%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF D +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346 >gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] Length = 385 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYL 179 Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 +V + D Q P +KP + GSS+GI K D LD + + Sbjct: 180 VVRPREWRQDEQAARKRIVDFAGDHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSD---FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ D +P D +Y +E KY ++ST Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EVQRLA A +A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTPEETAEVQRLAVEAFEAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G S+ EL+ +V+ A Sbjct: 355 YPQMWQASGVSYPELVDRLVQAA 377 >gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] Length = 359 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 179/343 (52%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------------------EDA--- 29 + ++ GG S+E +VSL + KA +AL EDA Sbjct: 5 LGLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLL 64 Query: 30 ----GFKVSQIDVDRSV-GLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 G ++S +++SV + +P D+ F +LHG GEDG +Q +LE+L+IPY +G Sbjct: 65 KFEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS----QH---LISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ + R + D+ QH ++ P +KP Sbjct: 125 VLASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI Q +L+Q+ +++++ ++++E+ +DG E+ V+G+ + + + Sbjct: 185 LGSSVGISKASNRQ----ELVQAFQTAFDYDRKVIVEEGIDGREVEIAVLGNDEPECSVV 240 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK+DFY Y+ KY ++ ++PA+I + Y+ ++ +A + +A+ C G+ R+DF Sbjct: 241 GEIVPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFL 300 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 S + E+N PG TPVS+FP + +G S+ L+ M+ Sbjct: 301 TKDS-TILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMI 342 >gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 355 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 60/352 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AVL GG S+E VS S A L+ F+V I + R Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 41 -----------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 S G + AH+ D+ F +LHG +GEDG +Q + EL I Sbjct: 67 EVKHGTELALSADPTRKGEIRTISDGSLYAHV--DVIFPILHGPYGEDGTMQGLFELSGI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLK 134 PY G+LAS++ MDK +K+++S+ G+PV P ++V T + + + P KP + Sbjct: 125 PYVGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPAR 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEI 192 GGSS+G+ + P + + D++L+E + G E+ GV+ D L + Sbjct: 185 GGSSIGVSKVSDWADFPEAV--RIALEDDDKILVEPEIVGREVEVGVLQYPDGRLIASVP 242 Query: 193 AVPK----SD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 A+ K SD FY +E KY T +PA P ++ +++ +A A +A+ C G+SR Sbjct: 243 ALLKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 DF ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 303 DFFV--TEEGLYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASAEA 352 >gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 160/340 (47%), Gaps = 53/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + VL GG+S ER+VSLSSG A ALE+ G + Sbjct: 3 IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62 Query: 34 -------SQIDVDRSV------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 ++ D+++ + +V L D F LHG GE+G +QA ++ Sbjct: 63 YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I Y+ S S L+MDK +KQ++ +P L + + S P V+KP+ Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQL---WEQGQEVYYSTPCVVKPID 179 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ +++ + L ++ +N +++IEQ ++G E + GV+GD L EI + Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAEKYN--SKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY+YE KY + + PA I D+ + + L ++ +G SR D++ Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTK-E 295 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +E N PGMTP S+ P+ A G SF EL +VE Sbjct: 296 LDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVE 335 >gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] Length = 352 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF--------------KVSQIDVDRS----- 41 +AV+ GG SSE EVS S S ++ + KV + R+ Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +G + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + ++ + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEI 192 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V+G ++ DV EI Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADT-FYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEH 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V + EIN PG T +S++P + G L+ ++E Sbjct: 305 GTNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIE 346 >gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314] gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 361 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 23/260 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q + L +IP G+L+SA MDK +K+++++ G+P+ + Sbjct: 104 DVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREV 163 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL 166 ++ T + L+ P +KP +GGSS+GI + + + +P +DL + H +++ Sbjct: 164 ILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLPAAVDLAR----QHDEKV 219 Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++E + G E+ CGV+ A L TE + FY ++ KY T +P Sbjct: 220 IVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDG--EGGFYDFDTKYLDNVVTAEIP 277 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + +I + VQ LA QA+ C G++R DF + EIN PG TP+S++P+ Sbjct: 278 APLDEEIIELVQSLAVETFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 335 Query: 277 MAAYAGYSFRELLLWMVEDA 296 M A +G + ELL +V+ A Sbjct: 336 MFAASGVGYEELLDVLVQQA 355 >gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 352 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF--------------KVSQIDVDRS----- 41 +AV+ GG SSE EVS S S ++ + KV + R+ Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +G + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + ++ + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEI 192 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V+G ++ DV EI Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADT-FYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEH 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V + EIN PG T +S++P + G L+ ++E Sbjct: 305 GTNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIE 346 >gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3] gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3] Length = 383 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 141/264 (53%), Gaps = 19/264 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++ + G+PV Sbjct: 124 DVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGSYA 183 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + T Q + P +KP +GGSS+GI ++ LD ++ ++L+ Sbjct: 184 VLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWAD--LDTAIKAARASDPKVLV 241 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHV-LPAKIP 220 E + G E+ CGV+G E +VP + FY +E KY S ++TH +PA + Sbjct: 242 ESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMS-DATHFDVPANLS 300 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +EV+ A A +A+ C G++R D +F V E+N PG TP S+FP M Sbjct: 301 HAVREEVRGAAIAAFEALDCAGLARVD-MFVTADDHVIINEVNTMPGFTPTSMFPRMWEA 359 Query: 281 AGYSFRELLLWMV----EDASCLR 300 +G ++ +L+ +V D + LR Sbjct: 360 SGVTYPQLVDRLVRLALRDGAGLR 383 >gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425] gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425] Length = 349 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 144/261 (55%), Gaps = 20/261 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +L+L++ P+ SG+LASA MDK+ K + ++ G+P + Sbjct: 90 DVWFPILHGPNGEDGTVQGLLKLMQRPWVGSGVLASAAGMDKIMMKTIFAAAGLPQVKYL 149 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 VNR + S + P +KP GSS+GI ++ + L ++S Sbjct: 150 AVNRSQLWSDPCVYTKLCDRIDTTLGYPCFVKPANLGSSVGITKVRNRPQLETALENAAS 209 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ +L++E V E+ C V+G+ AS+ V EI SDFY YE KY+ ++ ++ Sbjct: 210 YDR--RLVVETGVIAREVECSVLGNDHPRASV-VGEITY-SSDFYDYETKYTDGRASLII 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA +P I ++Q +A A AI G++R DF + + ++ EIN PG T S++P Sbjct: 266 PADLPPAIVTQIQEMALTAFTAIDAAGLARVDFFYLESTGEILINEINTLPGFTAFSMYP 325 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ A +G +F +L+ +++ A Sbjct: 326 QLWAASGVTFPDLVDQLIQFA 346 >gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] Length = 382 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 65/351 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS ++ + SAL+ + V I + + VLA P Sbjct: 20 VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L+L Sbjct: 80 IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-------FTMDSQHLISP 126 ++ Y SG+ ASA+ MDK K V ++ G+PV P +++ +R +D+ + Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI K D L ++ H ++++EQ + G E+ CGV+ Sbjct: 200 PVFVKPARAGSSMGI--SKVDSPDGLRAAVEAAREHDPKVIVEQGIVGREIECGVLDGHG 257 Query: 187 LDVTE-------IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238 D I V FY +E KY + + + PA + DI +++ ++A +A A Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 GC G++R DF + + EIN PG TP S++P M A AG ++ +L+ Sbjct: 318 GCEGLARCDFFLTD-TGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLI 367 >gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] Length = 367 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 140/258 (54%), Gaps = 18/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG+FGEDG +Q + E+ ++PY G+LAS+ +MDK +SK + +P+ P + Sbjct: 96 DVVFPVLHGSFGEDGTIQGLFEMADLPYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFL 155 Query: 112 LVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V +F D ++ + P +KP + GSS+G + + ++ W Sbjct: 156 CVRKFQWDNPKEREGFILHAEKELEYPLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLW 215 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV-LP 216 + ++LIE + E+ C V G+ V EI +P +FY Y+ KY + + +P Sbjct: 216 D--SKVLIEACIAAREIECSVTGNDEYVVYTPGEI-IPSHEFYDYDAKYIDPDGAQLKIP 272 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A I + +E++ +A A++A+ G++R DF D ++ ++ E+N PG T +S+FP+ Sbjct: 273 ADIDDEQRREIRSIAGKAYRALDLTGLARVDFFIDKKTKTIYLNEVNTIPGFTAISMFPK 332 Query: 277 MAAYAGYSFRELLLWMVE 294 M +G +REL++ + + Sbjct: 333 MCEASGMPYRELIMHLFD 350 >gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] Length = 367 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 41 ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ K D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130 P+ +G+L SA+SMDK +K+++ G+ V P + + R F S+ L P I Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERL-GLPLFI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186 KP GSS+G+ ++ L + S++H ++L+E + G E+ C V+G+ AS Sbjct: 185 KPANQGSSVGVSKVQDRAGFDAALALAFSFDH--KVLVESAIVGREIECAVLGNDEPQAS 242 Query: 187 LDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L EI + + FYSY+ KY + + V+PA+I ++ +++ +A A +A+ C G++R Sbjct: 243 L-CGEIVLSDA-FYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P V EIN PG T +S++P++ A +G S+ EL+ ++E Sbjct: 301 VDVFLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIE 348 >gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1] gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1] Length = 339 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 164/330 (49%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS--------------------QIDVDRSV 42 +L GG S E EVSL S ++ +AL F V+ + V Sbjct: 7 LLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSSQG 66 Query: 43 GLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 G ++ H D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ +K Sbjct: 67 GDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 98 QVVSSCGVP-VCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQS 149 QV+ S G+P V + V R + + P +KP GSS+GI + + Sbjct: 127 QVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSPEE 186 Query: 150 IPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYEL 204 LD + ++ ++++E E+ G++G+ + V E++ +DFY YE Sbjct: 187 --LDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSF-DADFYDYET 243 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY+ + +PA+IP ++ + ++ A A +A+ C G++R DF + + ++F E+N Sbjct: 244 KYTEGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVNT 303 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P++ AG S+ EL+ +VE Sbjct: 304 MPGFTTTSMYPKLFEAAGLSYSELVTRLVE 333 >gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 335 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 23/260 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q + L +IP G+L+SA MDK +K+++++ G+P+ + Sbjct: 78 DVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREV 137 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL 166 ++ T + L+ P +KP +GGSS+GI + + + +P +DL + H +++ Sbjct: 138 ILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLPAAVDLAR----QHDEKV 193 Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++E + G E+ CGV+ A L TE + FY ++ KY T +P Sbjct: 194 IVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDG--EGGFYDFDTKYLDNVVTAEIP 251 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + +I + VQ LA QA+ C G++R DF + EIN PG TP+S++P+ Sbjct: 252 APLDEEIIELVQSLAVETFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 309 Query: 277 MAAYAGYSFRELLLWMVEDA 296 M A +G + ELL +V+ A Sbjct: 310 MFAASGVGYEELLDVLVQQA 329 >gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 376 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 65/351 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS ++ + +A++ ++V I + R V++ P Sbjct: 14 VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LE+ Sbjct: 74 IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTMDSQHLISP------ 126 ++ Y G+ +SA+ MDK K + + G+ V P ++ +R + D Q ++ Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + D L+ ++ H ++++EQ +DG EL C V+ Sbjct: 194 PVFVKPARAGSSMGI--TRVDDLADLEQAVEAAREHDLKVVVEQGIDGRELECAVLDGHG 251 Query: 187 LD------VTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238 + V EI V FY +E KY +ST + PA+ P + +E++RLA A A Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 C G++R DF P ++ EIN PG TP S++P + A +G S+ EL+ Sbjct: 312 DCEGLARVDFFVTP-DERILINEINTMPGFTPYSMYPALWAASGISYPELI 361 >gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] Length = 329 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 142/248 (57%), Gaps = 14/248 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K DL +N +HG GEDG +QA +L+ +PY SAL+ +K V+S G+P Sbjct: 72 KFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLSKYGIPHAK 131 Query: 110 SI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 S+ L ++ + ++ P +KP K GSSLGI + +++ IP L ++ + Sbjct: 132 SVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKAL--ELAFAEDKE 189 Query: 166 LLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +LIE ++DG+E++ GV+ G + L +TEI V ++F+ YE KY S + PA+I Sbjct: 190 VLIEAFLDGLEVSVGVLKYKGKTTVLGITEI-VSDNEFFDYEAKYDG-KSQEITPARISQ 247 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + + V+ +A + ++ G SR++++ + + + LEIN PGM+P SIFP+ AAYA Sbjct: 248 ETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASIFPQQAAYA 305 Query: 282 GYSFRELL 289 G S +EL+ Sbjct: 306 GISLQELV 313 >gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] Length = 385 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 137/262 (52%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL IPY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYL 179 Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V +T D+ P IKP + GSS+GI K D LD + Sbjct: 180 TVRPREWTRDADAARGRILDFAEEHGWPLFIKPARAGSSIGI--TKVDDVSGLDEAVREA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++++E + G E+ CGV+ AS+ V DFY +E KY +++ + Sbjct: 238 QRHDPKIIVEARLRGREIECGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKYID-SASGI 296 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EV+RLA A +A C G+ R+DF V EIN PG TP+S++ Sbjct: 297 VPAPLTPEQTAEVRRLAVEAFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMY 355 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G ++EL+ +++ A Sbjct: 356 PRMWQESGVEYQELVDLLIQAA 377 >gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803] gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 159/338 (47%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--------------------GFKVSQIDVDR 40 + +L GG S E EVS+ S +A A AL G VSQ +D+ Sbjct: 3 VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62 Query: 41 SVGL----VLA----HLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 V V A P+ A F +LHG GEDG VQ + L+++PY SG+L S Sbjct: 63 GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKG 135 + MDK+ K V G+P + V R + S + P P +KP Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTE 191 GSS+GI ++ + L ++S++ ++++E + I E+ C V+G+ + V E Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDR--RIIVEAGLTDIREVECAVLGNENPQASVVGE 240 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I SDFY YE KY+ S +PA +P + ++Q +A A +A+ G+ R DF + Sbjct: 241 ITY-DSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQ 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 P + ++ EIN PG T S++PE+ +G F L+ Sbjct: 300 PTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLV 337 >gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482] gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482] gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 324 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE VSL S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + F + + +I+ P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++ G E+TCG + +V TE+ V ++F+ Y KY+ S Sbjct: 183 EKAFEESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 367 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 171/347 (49%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 40 --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ ++P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T D + LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ L + ++++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSADQFAAALALALAYDY--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S + V+PA I + +Q++A A+QA+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLIARLIE 348 >gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] Length = 322 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 18/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55 +AVL GG + EREVSL SGK AL E+ IDV + LV L + + Sbjct: 20 IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112 N+LHG GEDG +Q +LE L I YT IL SA+ M+K+ +K++ S V +L Sbjct: 80 NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 V S ++ P +IKP+ GSS+G+ +IK + + + N+ +E Y+ Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEFDNTIKKIEDINN---YFLEPYI 196 Query: 173 DGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+T G++ + D+ + K++ Y Y+ KY+ + +PAKI DI K+V Sbjct: 197 KGKEITVGLVKEED-DIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVI 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+ +GC G+SR D + + +V+ +E+N Q GMT S P MA G F +L Sbjct: 256 ETCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADL 313 Query: 289 LLWMV 293 L+++ Sbjct: 314 ALYIL 318 >gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. B100] gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris] Length = 368 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65 Query: 40 ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R+V A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T D Q LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSYE KY + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 348 >gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 333 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 157/307 (51%), Gaps = 23/307 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL+S + AL G V +DVD SV L PD F +HG+ Sbjct: 9 VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119 GEDG ++ +L+L +PY + + L+ DK +K V+ + GV SI ++ + Sbjct: 69 GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 L+ P V+KP +GGS+LG+ ++++ + L+ +++ L+EQYV Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFAYD--TVALVEQYV 186 Query: 173 DGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 G EL V+ D +L EI P + Y +Y++ + + +PA+I Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIR-PVDGMFDYAARYTAGMTEYHVPARITETARDRA 245 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF-- 285 +A AHQA+G R +SR+D + +V +LE NV PGMTP S+ P AA G Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTA-DDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGT 304 Query: 286 --RELLL 290 R+LL+ Sbjct: 305 LCRDLLV 311 >gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] Length = 364 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 163/345 (47%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47 + +L GG S E VSLS+ A +A++ F V I + +R G V Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64 Query: 48 --------------HLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + P D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + + + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189 P GSS+GI K+ + ++ ++ ++++E+ + G E+ GV+G D V Sbjct: 185 PANAGSSVGITKCKRRADLQAAFAEAFKYDR--KIIVEEAIVGREIEIGVIGNDDPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +V+ EIN PG TP S+FP + ++G S+ EL+ +V+ Sbjct: 303 LGE-DGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQ 346 >gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] Length = 337 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VS+ S + S ++ + + +++ D Sbjct: 16 IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +KPD A+ +HG GE+G++Q EL+ +PY+ +L SAL+ K Q + Sbjct: 76 SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135 Query: 101 SSCGVPVCPSILVNRFT--MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+LV + D Q I P IKP GSS G+ +K + I L Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 193 Query: 157 SSSWNHGDQLLIEQYVDGIELT--CGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212 +++ D ++IE ++DGIEL C D S+ +TE+ V K++F+ + KY T Sbjct: 194 EAAFKESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEV-VSKNEFFDFNAKYKG-EVT 251 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ + VQ+L + + C+GI R D++ K+ LEIN PGMT S Sbjct: 252 EITPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATS 310 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 311 FIPQQVRAAGLDIKDVMTDIIED 333 >gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 370 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 21/283 (7%) Query: 31 FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 F S +V + +G V D+ F +LHG FGEDG +Q +L+ ++ Y G+ ASA Sbjct: 92 FSASNPEVFKDLGEV------DVVFPLLHGPFGEDGTIQGLLDTADVRYVGCGLTASAAG 145 Query: 91 MDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ------HLISPPYVIKPLKGGSSLGII 142 MDK +K ++ G+PV L+ ++ D + + +KP + GSS+GI Sbjct: 146 MDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGEVVFVKPNRAGSSVGIT 205 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD 198 + L+ + H ++++E G EL CGV+ G + V EI V +D Sbjct: 206 RVA--DFTQLEAAVEEARRHDPRVIVEAATPGRELECGVLEFLDGPRASAVGEITVSGAD 263 Query: 199 FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY +E KY ++ + +PA IP + +Q A A+GC G+SR DF ++ + ++ Sbjct: 264 FYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCEGLSRVDFFYNEETDEL 323 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG TP S++P M G S+ EL+ +++ A R Sbjct: 324 SLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366 >gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 366 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 71/354 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 41 ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 +V L+ LA L D+ F ++HG GEDG +Q +L + Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 IP+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 IKP GSS+G+ ++ +Q++ L +++ ++L+E + G E+ C VMG+ Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237 Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ASL E+ + +FYSY+ KY + + ++PA I + ++ +A A +A+ C Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALEC 295 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG++R D P +R V EIN PG T +S++P++ G EL+ ++E Sbjct: 296 RGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIE 348 >gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE VSL S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + F + + +I+ P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++ G E+TCG + +V TE+ V ++F+ Y KY+ S Sbjct: 183 EKAFEESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4] gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4] gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] Length = 324 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE VSL S + S ++ + + S+ +DR+ Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + F + + +I+ P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++ G E+TCG + +V TE+ V ++F+ Y KY+ S Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 373 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 15/251 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG FGEDG +Q + E+ IPY +G+LASA+ MDK+ K+V + +P C Sbjct: 102 DVVLPLLHGTFGEDGTIQGLFEMANIPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFR 161 Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R F M + I P IKP GSS+GI + + + ++ ++ Sbjct: 162 HFTRSQWQKDQPFFLMGLEISIGYPCFIKPANLGSSVGISKARNRDELIKAVEEAFKYDR 221 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAK 218 +++IE++V+ E+ V+G+ +V+ I+ SDFY Y+ KY NS V+PA Sbjct: 222 --KVIIEEFVEAREIEVAVLGNEEPEVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPAD 279 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IP + ++Q LA A +AI G+SR DF + EIN PG TP S++P + Sbjct: 280 IPEETAAQIQELAIRAFKAIDGSGLSRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLW 339 Query: 279 AYAGYSFRELL 289 +G + +LL Sbjct: 340 KESGKPYAQLL 350 >gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] Length = 385 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++++ G+ + P Sbjct: 123 DVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPYT 182 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + D + + P +KP +GGSS+GI + + L + + + ++L+ Sbjct: 183 VLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARAVDP--KVLV 240 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPAK 218 E V G E+ CGV+G E ++P + FY +E KY S + +PA Sbjct: 241 EAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPAN 300 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P ++ V+++A A A+ C G++R D P V E+N PG TP S+FP M Sbjct: 301 LPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRMW 359 Query: 279 AYAGYSFRELLLWMV 293 A G + L+ +V Sbjct: 360 AATGLDYPRLVDRLV 374 >gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] Length = 361 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35 + ++ GG SSE EVS+ SG+ A++ + GF S Q Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 36 IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 I+ R+V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF D +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346 >gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146] gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 390 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S E EVSL S K A++ + F V+ I +D+ Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88 Query: 43 GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77 + L H + LA F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T + + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ A V Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADALRFDH--KVIVERGVIGHEIECAILGNEVAQASV 266 Query: 190 TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S+ ++ V+PA + ++ + V++ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVD- 325 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G S++ L+ ++E Sbjct: 326 VFVTAENEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIE 371 >gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN] gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923] gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae] gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923] Length = 384 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 143/259 (55%), Gaps = 18/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK +K++ ++ G+P+ Sbjct: 122 DVVFPVLHGPYGEDGTIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYT 181 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q +S P +KP +GGSS+GI + +P + + + H +++ Sbjct: 182 VLRPLRPTLHRQECERLSLPVFVKPARGGSSIGISRVSSWGQLPSAI--AYARRHDPKVI 239 Query: 168 IEQYVDGIELTCGV--MGDASL---DVTEIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E V+G EL CGV M D ++ V EI V + FY + KY + +PA Sbjct: 240 VEAAVNGRELECGVLEMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPA 299 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ D+ EV++LA A +AI C+G++R DF + EIN PG T S++P++ Sbjct: 300 KVDDDVADEVRQLAIQAFRAIDCQGLARVDFFLTDDGPVIN--EINTMPGFTMTSMYPKL 357 Query: 278 AAYAGYSFRELLLWMVEDA 296 A + + LL MV+ A Sbjct: 358 WAVSSVDYPTLLATMVDTA 376 >gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017] gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017] Length = 352 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48 + ++ GG S E EVS++S KA AL+ A ++V + ++ VL Sbjct: 6 VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 KP D+ F +LHG GEDG +Q +L+L+++PY SG+L SA Sbjct: 66 GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------------HLISPPYVIKPLKGGS 137 MDK+ K V ++ G+P V R + S I P +KP GS Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA 193 S+GI ++ + L ++S++ ++++E V E+ C V+G+ AS+ V EI+ Sbjct: 186 SVGISKVRSRLELEAALDSAASFDR--RIVVEAGVVAREVECAVLGNGRPRASV-VGEIS 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ ++ +PA +P DI +++Q +A A A+ G+SR DF + Sbjct: 243 F-DSDFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVES 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +V EIN PG T S++P + + +G F +L+ +++ Sbjct: 302 TGEVLINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQ 342 >gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] Length = 364 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 169/349 (48%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-----------------DAGFKVSQI------- 36 + +L GG S E EVS+ S +A A AL+ D ++ +I Sbjct: 6 VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65 Query: 37 --------DVDRSVGLVLA-HLKPD--------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + S LV + L PD + F +LHG GEDG +Q +L L+++P+ Sbjct: 66 GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------P 127 SG+L SA+ MDK+ K + S G+ +V R + S + P P Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI ++ + L ++S++ ++++E V+ EL C V+G+ + Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAASYDR--RIIVEAGVEARELECAVLGNDTP 243 Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + SDFY YE KY++ + +PAK+ +I +V+ +A A A+ G++R Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF + + +V EIN PG T S++P++ A +G SF EL+ +V+ Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQ 352 >gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine Ligase (Ddl) From Thermus Caldophilus: A Basis For The Substrate-Induced Conformational Changes Length = 322 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 8/248 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V++ GVPV P + Sbjct: 78 DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 137 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V + P+ +KP GSS+GI +++ Q L+ + ++ + ++ ++E+ Sbjct: 138 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 194 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + + EL GV+G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 195 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 254 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ +G RG++R DF +++ E+N PG TP S++P + G ++ EL Sbjct: 255 ELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 312 Query: 289 LLWMVEDA 296 L +VE A Sbjct: 313 LRRLVELA 320 >gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7] gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7] Length = 346 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 47/334 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG SSE VS S + + L+ ++++ + +D G Sbjct: 5 LLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWL 64 Query: 45 --------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 V LK D+AF VLHG +GEDG +Q + EL ++PY ++ S+++MDK+ Sbjct: 65 DNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIY 124 Query: 96 SKQVVSSCGVPVCPSILVNRF----------TMDSQHLISP--------PYVIKPLKGGS 137 +K+++ + GVP S+ V + T D I P IK + GS Sbjct: 125 TKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195 S+G + L +++ ++ +++E+ +D IEL V+G+ + V+ + +P Sbjct: 185 SVGCYRCDNQTELIGKLSEAAKYDR--HVVVEECIDCIELETAVLGNDDVIVSRVGQIMP 242 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +FY++E KY S +PA + I +++++ A +A+ G+SR DF D + Sbjct: 243 HGEFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTN 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 K++ EIN PG T +S++P++ G ++ ELL Sbjct: 303 KIYLNEINTMPGFTKISMYPQLMNDFGITYPELL 336 >gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] Length = 332 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 39/331 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------GLVLAHLKPDLA 54 +AVLMGG SSE ++SL+SG ++L+ ++V + + + G A K D + Sbjct: 6 IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65 Query: 55 F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 F N +HG GEDG +QA LELL IP T SA++ +K + V+ Sbjct: 66 FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125 Query: 101 SSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ VN+ F + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSL 209 L +++ Q+LIE ++ G E++ GV G+ L EI VP DF+S E KYS Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEI-VPDGDFFSLEAKYSG- 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S ++PA++ EVQ L + + +GI R DF+F K ++E+N PG++ Sbjct: 242 KSQEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFH--EGKPHFVEVNTNPGLS 299 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SI P AG S E+ +E C++ Sbjct: 300 KESIIPREFKAAGLSLAEVFGEAIE--HCIK 328 >gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 385 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYV 179 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + + P +KP + GSS+GI K D LD + Sbjct: 180 VIRPREWERDRSAARKRIVDFAGEHGWPLFVKPARAGSSIGI--TKVDGLAGLDEAIEEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ G + EI P + +Y +E KY ++ST Sbjct: 238 RRHDPKILVEAELRGREIECGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EV+RLA A +A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 LVPAPLTAEETAEVRRLAVEAFEAASCEGLVRADFFLTEEGEFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 FP+M G S+ EL+ ++E A Sbjct: 355 FPQMWQATGVSYGELVDRLIESA 377 >gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 236 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 12/228 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + IS P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + G E T ++G+ L I P FY YE KY S + + PA + Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGL 229 >gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 366 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 132/246 (53%), Gaps = 15/246 (6%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 ++ D+ VLHG +GEDG VQ +LEL IPY G+LASA+ MDK + + + G+P Sbjct: 101 VRADVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANAMFDASGIPHT 160 Query: 109 PSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + R+ ++ + P +KP GSS+GI K L + Sbjct: 161 KWLSATRWEIECDPEGVCDGVIAKLGWPIFVKPANAGSSVGIT--KAHDRTELKEAIRLA 218 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + +++ E +VDG E+ C V+G S EI + ++FY+Y+ KY + S V+P Sbjct: 219 LANDRKVVFEAFVDGHEVECAVIGSDPAVSTRPGEI-LAGAEFYTYDDKYKNGVSQVVIP 277 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P + EV+ A +A+ A+GC G++R DF + + +V EIN PG TP+S++P+ Sbjct: 278 AKLPEEKLDEVKTYAAMAYTALGCEGLARCDFFVEKNTGRVLINEINTLPGFTPISMYPK 337 Query: 277 MAAYAG 282 + + G Sbjct: 338 LMEHEG 343 >gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 385 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 135/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F +LHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V S G+PV P Sbjct: 120 DAVFPMLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYE 179 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + +D P IKP +GGSS+GI K D LD + + Sbjct: 180 VIRPREWANDPAAARKKIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLAGLDDAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++L+E + G E+ CGV+ AS+ V DFY +E KY ++ + Sbjct: 238 QRHDPKILVESLLRGREIECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYID-SAAGL 296 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EVQRLA A A C G+ R+DF V EIN PG TP+S++ Sbjct: 297 VPAPLTDEQTAEVQRLAVAAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISMY 355 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G ++ EL+ +++ A Sbjct: 356 PRMWQESGVAYTELVDRLIQAA 377 >gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] Length = 372 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 170/350 (48%), Gaps = 58/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AV+ GG S E +VSL S +A ++ F++ + + R ++ Sbjct: 7 VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66 Query: 48 --HLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 L+P D+ F VLHG +GEDG +Q +LEL IPY Sbjct: 67 PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVI 130 G+LASA++MDK +K++ +S G+ I QH + P + Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186 KP GSS+G+ ++ + + + +S ++ ++++E+ +D EL V+G+ AS Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELASRYDR--RIVVEEAIDARELEVSVLGNEEPVAS 244 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + V EI VP +FY YE KY +S ++PA I + V+R+A A + I G++R Sbjct: 245 I-VGEI-VPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + ++ E+N PG T +S++P++ +G FR+L+ ++E A Sbjct: 303 DFFLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352 >gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] Length = 383 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 18/253 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F +LHG FGEDG +Q +LEL ++PY G+ ASA+ MDK K + G+ V P Sbjct: 119 DAVFPLLHGPFGEDGTLQGMLELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYT 178 Query: 112 LVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V+ T + L + P +KP + GSS GI + D+ LD +++ H Sbjct: 179 VVHDRTWRTDPLGVREAVAELGFPVFVKPARAGSSFGI--TRVDEPSQLDAAIATAREHD 236 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT------EIAVPKSDFYSYELKY-SSLNSTHVLP 216 +L++E +DG E+ C V+G D EI V Y +E KY S +T P Sbjct: 237 LKLVVEAGIDGREIECAVLGGHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCP 296 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A++P + ++R A A A+ G+SR DF F +V EIN PG TP+S++P Sbjct: 297 ARLPEHVIDTLRRDAVRAFHAVDGEGLSRCDF-FVTADERVLINEINTMPGFTPISMYPR 355 Query: 277 MAAYAGYSFRELL 289 M A +G + L+ Sbjct: 356 MWAASGIDYSALI 368 >gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 352 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 160/343 (46%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----------------GLVL 46 VL GG+S+ER+VSL+S L + G +DV + GL + Sbjct: 5 VLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGLEI 64 Query: 47 A----HLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74 A +PDLA F LHG GE+G +QA +L Sbjct: 65 AKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131 L I YT L A++MDK +KQV G+ + +++ D +S P V+K Sbjct: 125 LGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ + D L+ S+ + D+++IE ++ G E CG++ +L E Sbjct: 185 PCSGGSSIGVYIVNTEDEYK-DALE-KSFRYEDEIVIETFIKGREFACGIIDGEALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY + V PA IP DI + + L A A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFLLD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE+N PGMT S+ P+ A AG + +L +++ Sbjct: 302 D-QGSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQ 343 >gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8] gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8] gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus] Length = 319 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 8/248 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V++ GVPV P + Sbjct: 75 DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 134 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V + P+ +KP GSS+GI +++ Q L+ + ++ + ++ ++E+ Sbjct: 135 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + + EL GV+G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ +G RG++R DF +++ E+N PG TP S++P + G ++ EL Sbjct: 252 ELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 309 Query: 289 LLWMVEDA 296 L +VE A Sbjct: 310 LRRLVELA 317 >gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 369 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 146/280 (52%), Gaps = 30/280 (10%) Query: 29 AGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AG +++ D D RS+G V D+ F +LHG GEDG VQ +LEL +PY SG+L Sbjct: 84 AGRELTVRDADGAERSLGRV------DVVFPILHGTQGEDGTVQGMLELAGLPYVGSGVL 137 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137 ASAL MDK +K V+ + G+ V P I V+R + + P +KP + GS Sbjct: 138 ASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGLPAFVKPARAGS 197 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVT-E 191 S+G+ + D LD ++ D++L+E + G E+ C ++ + S V E Sbjct: 198 SVGVSRVSADAG--LDSALEVAFREDDRVLVESGLVGREVECAILDEGPGREPSASVAGE 255 Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I V DFY ++ KY + V PA + E++ L+ A +A+ RG++R DF Sbjct: 256 IVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVDARGLARVDFF- 314 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L+ + F L EIN PG TP+S+FP +G ++ +L+ Sbjct: 315 --LTAEGFVLNEINTMPGFTPISMFPACWEASGLAYPDLI 352 >gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16] gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16] Length = 368 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S+E EVSL S K A++ F V+ I +D+ Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65 Query: 41 -------SVGLVLAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEI 77 + G+ L K D + F ++HG GEDG +Q + L + Sbjct: 66 LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHL---ISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V + R T+D + + + P IK Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + ++ S++H ++LIE + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAFSYDH--KVLIEAAIKGREIECAVLGNDYPKAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P+ FYSY+ KY + + +PA +P D+ + +Q +A A++ + C G++R D Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F + +V E+N PG T +S++P++ +G S+++L+ ++E Sbjct: 303 VFLTETGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIE 348 >gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] Length = 376 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 20/261 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ +LHG FGEDG +Q +LEL + Y SG+LASA MDK K +++ G+PV P Sbjct: 108 DVVLPLLHGPFGEDGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWT 167 Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 S R+ D +++ P +KP + GSS+GI + + + + ++ S H Sbjct: 168 SFRARRWDTDRDGVVAEVEALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVS--HD 225 Query: 164 DQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVL 215 ++++E + G E+ CGV+ D SL V DFY +E KY S N Sbjct: 226 PKVVVEAALVGREIECGVLEDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTC 285 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSI 273 PA +P D+ V+R A +A+G G++R D DP + + EIN PG TP S+ Sbjct: 286 PADLPDDVVAAVRRTAVRVFEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSM 345 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 +P M A G + EL+ +++ Sbjct: 346 YPRMWAATGVDYPELVHRLIQ 366 >gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 349 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 35/317 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G V+ DVD + L +PD+ + +LHG Sbjct: 41 VLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHGAG 100 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------------- 109 GEDG ++ +LEL +PY +G AS L+ DK +K+ + + G+ Sbjct: 101 GEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRDLG 160 Query: 110 -----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 SI+ RF + P V+KP +GGS+LG+ + + ++ + +GD Sbjct: 161 AQGVLSIVAERFGL--------PVVVKPTRGGSALGVTRVTSKDGLARAMVD--CFAYGD 210 Query: 165 QLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 LIE+ VDG+E+ V+ G +L EI V Y ++ +Y+ + PA++ Sbjct: 211 SALIERAVDGVEIAVSVIDGMDGPVALPAVEIIVDGP--YDFDARYNPGRVEYFAPARLS 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D V +A AHQA+ R +SR+D + LE+NV PGMT S+ P+ A Sbjct: 269 PDQAAHVAGVAVAAHQALDLRHLSRTDLILQ-TDGTAQVLEVNVAPGMTETSLLPQAAVA 327 Query: 281 AGYSFRELLLWMVEDAS 297 AG+ L +VE A+ Sbjct: 328 AGHDLGTLYRQVVEHAA 344 >gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 265 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 137/257 (53%), Gaps = 14/257 (5%) Query: 44 LVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 LV H D FNVL H GED +VQ + E +PYT S +L SALSMDK+R+KQV Sbjct: 11 LVAQHF--DRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKIRTKQVWL 68 Query: 102 SCGV--PVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ P + D + I P ++KP GSS+G+ + + + Sbjct: 69 SLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTL 128 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ ++ LL+EQ ++G ELT V+GD +L I VPK +Y Y KY + ++ ++ P Sbjct: 129 AARYDGA--LLMEQLIEGDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP 185 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 + + ++++LA A A GCRG R D + D S +++ LE+N PGMT S+ P+ Sbjct: 186 G-LEGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPK 244 Query: 277 MAAYAGYSFRELLLWMV 293 A G F E L+W V Sbjct: 245 AARQLGIDF-ETLVWRV 260 >gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] Length = 357 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 28/293 (9%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72 V+L+ G+A A L R VG LA + D+ F VLHG +GEDG VQ + Sbjct: 76 RVALAVGRAGAGEL-------------RFVGGELAA-QVDVVFPVLHGPYGEDGTVQGLF 121 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHL---ISPPY 128 EL +PY G+ ASA MDK K ++ G+PV P ++L D+ L +S P Sbjct: 122 ELANLPYAGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPV 181 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----G 183 +KP +GGSSLG++ + + + +P L + ++ ++L+E + G E+ C V+ Sbjct: 182 FVKPARGGSSLGVVKVDRWEDLPHALATARKYDP--KVLVEAGIAGREIECAVLEFPDGR 239 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A+ + EI VP++ Y +E KY + + +PAK+ + E++ LA A + + C G+ Sbjct: 240 VAAGALGEIVVPET--YDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGL 297 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF R V E+N PG T S++P+M AG + LL +++ A Sbjct: 298 SRVDFFLTQDGRPVVN-ELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349 >gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14] Length = 350 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 160/343 (46%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44 VL GG+S+ER+VSLSS L + G +DV D + + Sbjct: 5 VLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGLEI 64 Query: 45 V--LAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74 V ++ +PDL F LHG GE+G +QA +L Sbjct: 65 VKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131 L I YT L A++M K +KQ+ GV P +I N Q L ++ P V+K Sbjct: 125 LGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ D+ L S+ + D+L++E Y+ G E CG++ +L E Sbjct: 185 PCSGGSSIGVYIVNTDEEYAEAL--KKSFRYEDELVVEPYIKGREFACGIIDGTALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFLLD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F LE+N PGMT S+ P+ A G + +L +++ Sbjct: 302 A-EGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIK 343 >gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 400 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 144/269 (53%), Gaps = 19/269 (7%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ D+ F VLHG FGEDG +Q +LEL I Y SG+L SA MDK K++ +S +P+ Sbjct: 124 LQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLPIT 183 Query: 109 PSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + + T + + P +KP GSS+GI + + + + ++ Sbjct: 184 KHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELAAG 243 Query: 160 WNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNST 212 ++ ++++EQ V G EL V+G+ + + + + VP +FY YE KY S S Sbjct: 244 FDR--KIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGSV 301 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMTPV 271 ++PAK+ K+++ +A A +A C G++R DFL +P S +++ EIN PG T + Sbjct: 302 PIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFTSI 361 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S++P++ +G + +L+ ++E A R Sbjct: 362 SMYPKLWEASGLPYSKLIDRLIELARERR 390 >gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 324 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 33/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ + + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E ++DG+E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 P+ A ++++ ++E+ S Sbjct: 300 FIPQQVRAANLEIKDVMTDIIENQS 324 >gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] Length = 365 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 169/350 (48%), Gaps = 64/350 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 +AVL GG S E EVSL S +A +AL+ ++V Sbjct: 5 VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64 Query: 34 ----------------SQIDVDRSVG---LVLAHLKP---DLAFNVLHGNFGEDGLVQAI 71 +++V + G + +A L P D+ F VLHG GEDG VQ + Sbjct: 65 TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122 LEL + Y G+ ASA+ MDK K ++ G+P+ P +LV R + Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ P +KP GSS+G+ K + L +++ ++ ++++EQ + E+ V+ Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRDGLAEALAEAARYDR--RIVVEQGIPAREIEVSVL 242 Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G+ +V+ E+ VP ++Y Y KY S +PA I D+ +EV+RLA A Q+I Sbjct: 243 GNDEPEVSIPGEV-VPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSID 301 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G++R DFL D S +++ E+N PG TP+S++ +M A +G + LL Sbjct: 302 GAGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLL 351 >gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 349 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 167/343 (48%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AV+ GG SSE EVSL S A L+ + V +I + Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65 Query: 39 ---------------DRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 DR + + H + D+ F VLHG GEDG +Q + E+ IPY Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLK 134 + AS++ +DK + ++V G V SI ++ T + + + P +KP + Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTE 191 GSS+G I ++ S + ++++ G ++++E+ ++G E+ C ++G+ L V E Sbjct: 186 EGSSIG-ITKAENHSDLMGGIEAALKLDG-KVVLEENIEGFEVGCAILGNDDLIVGTVDE 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I VP F+ + KY+ NS LPA+I D+ + ++ + ++A+GC G+SR D D Sbjct: 244 IEVPNG-FFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R VF E+N PG T S FP M +AG ++R++L +++ Sbjct: 303 KNHRIVFN-EVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLID 344 >gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 371 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 21/278 (7%) Query: 30 GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 G K+ ++ R P++ F +HG EDG +Q L + +IPY SG+LASAL Sbjct: 77 GLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTDIPYVGSGVLASAL 136 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS----------QHLISPPYVIKPLKGGS 137 M+K+ +KQ+ ++ +PV P +V R DS + +++ P +KP GGS Sbjct: 137 GMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVLTYPIFLKPASGGS 196 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAV 194 S+G + L + S ++ ++L+EQY+ EL V+G+ V EI + Sbjct: 197 SVGTFKAGNRSELVAALGEVSKFDR--EILLEQYIPARELEVAVLGNLQPQAPMVGEILM 254 Query: 195 PKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 ++D FY YE KY + ++ + LPA +P D+ + + LA A++ +GC+G++R DF D Sbjct: 255 -QADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLGCKGMARVDFFLD 313 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 S ++ EIN PG T S++P+ A AG + L+ Sbjct: 314 RCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALV 351 >gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152] gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152] Length = 363 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 19/302 (6%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66 G+S E S+ +G + D + +D + G VL + D+ F +LHG FGEDG Sbjct: 61 GLSHEALPSVDAGGTALTLTADPTRGGELVALDDA-GAVLGTV--DVVFPILHGPFGEDG 117 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQH 122 +Q +LEL +PY G+LASA MDK +K+++++ G+PV +++ T + + Sbjct: 118 TLQGMLELAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRE 177 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSS+GI K D LD +++ H ++++E + G E+ CGV+ Sbjct: 178 RLGLPVFVKPARAGSSIGI--TKVDDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVL 235 Query: 183 ----GDASLDV-TEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 G S V EI +P+ D FY ++ KY +PAK+ DI ++V+ LA A Sbjct: 236 EFPDGRISASVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRA 295 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 QA+ C+G++R DF + EIN PG T +S++P M G + L+ ++E Sbjct: 296 FQALDCQGLARVDFFV--TADGPVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIE 353 Query: 295 DA 296 A Sbjct: 354 TA 355 >gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] Length = 352 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44 VL GG+S+ER+VSLSS L + G +DV D + + Sbjct: 5 VLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGLDI 64 Query: 45 V--LAHLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74 V ++ +PDLA F LHG GE+G +QA +L Sbjct: 65 VKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131 L I YT L A++M K +KQ+ GV P ++ N + Q L ++ P V+K Sbjct: 125 LGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ D+ L S+++ D++++E Y+ G E CG++ +L E Sbjct: 185 PCSGGSSIGVYIVNTDEEYQNAL--EHSFHYEDEIVVEPYIKGREFACGIIDGKALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY + V PA IP ++ + ++ L A A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFLLD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE+N PGMT S+ P+ A AG + +L +++ Sbjct: 302 A-EGSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIK 343 >gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61] gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61] gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] Length = 367 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LE+L IPY +G+LASA+ MDK+ K + + G+ I Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFTQAGLRQAKYI 155 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V ++ + + P +KP GSS+GI K+ + +++ ++ Sbjct: 156 AVTKYDWQKSGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFQYDR 215 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IE+ + G E+ GV+G+ V VPK +FY YE KY + ++PA + Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y+ ++++A A QA+ G++R DF F V+ E+N PG TP S+FP + + Sbjct: 274 KEQYETIKQMAITAFQALDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332 Query: 281 AGYSFRELL 289 +G + EL+ Sbjct: 333 SGVPYPELI 341 >gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] Length = 360 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 164/330 (49%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVGLVLAH 48 +L GG S E EVSLSS ++ +AL F+V+ + + + G + Sbjct: 28 LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87 Query: 49 LKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 +P D+ F +LHG GEDG VQ +L L +P+ SG+L S++ MDK+ +K Sbjct: 88 GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147 Query: 98 QVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS 149 +V+ + G+P +R + D Q + S P +KP GSS+G+ + Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGD---ASLDVTEIAVPKSDFYSYEL 204 + L ++ H ++++E E+ G++G+ + V E+ +DFY Y+ Sbjct: 208 LAEAL--ELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRF-DTDFYDYDT 264 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY+ + ++PA +P + + +Q LA A+QA+ C G+SR DF + + ++ EIN Sbjct: 265 KYTGGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINT 324 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ ++E Sbjct: 325 MPGFTTTSMYPSLLQAHGLSYPELVTRLIE 354 >gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 316 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 15/303 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHG 60 V GG S EREVSL SG+A AL G+ V +D D + +V L DL F LHG Sbjct: 5 VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L+ IPYT A MDK ++ V+ + GV V P + +MD Sbjct: 65 GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRV-PEGIPFDGSMDQ 123 Query: 121 QHLIS-----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L+ V+KP + GS++GI ++ D LD ++ + +L++E++++G Sbjct: 124 GVLLELLRRWGRLVVKPCRCGSTVGIGIV--DHPSRLDRALDEAFRYDRRLVVERFIEGR 181 Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V G +L EI P+S FY Y KY+ + ++ PA + + V R A Sbjct: 182 ELTVAVFDTPEGPKALPTVEIR-PRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAA 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC SR D + + + LE+N PGMT S+ P+ A G+ F E+L Sbjct: 241 VEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRR 300 Query: 292 MVE 294 + E Sbjct: 301 ICE 303 >gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 390 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 137/261 (52%), Gaps = 22/261 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG FGEDG +Q +LEL ++ Y +G+LASA+ MDK K V++ G+PV P Sbjct: 124 DVVFPLLHGPFGEDGTLQGMLELADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFT 183 Query: 110 SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 IL D + + P +KP + GSSLGI + +P L + + H Sbjct: 184 VILPGELERDPDEVARRVEKLGLPLFVKPARAGSSLGITRVDDLADLPAALDAARA--HD 241 Query: 164 DQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAV--PKSDFYSYELKY-SSLNSTH 213 ++++E V G E+ CGV+G ASL EI V P+ FY +E KY T Sbjct: 242 PKVVVEAAVVGREIECGVLGGRDGQRARASLP-GEIVVTDPRHTFYDFEAKYLDEAGVTL 300 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 PA +P D+ +V+ +A +AIGC GI+R D P +V EIN PG TP S+ Sbjct: 301 ACPADLPADVVAQVRDVAVRTFEAIGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSM 359 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 +P M G + +L+ +V+ Sbjct: 360 YPRMWEATGLPYPQLVDELVQ 380 >gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 18/297 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ AL V DV + L P + VL+G Sbjct: 14 VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF-TMD 119 GEDG V+ +LEL +PY + A L+ DK +K ++ G+ P ++ N F + Sbjct: 74 GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133 Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + L+S P +KP GGS+ G+ ++K +P L+ + + H D LIE+ V Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAALM--ACFAHHDTALIERAV 191 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G ++ EI VP+ Y Y YS+ + PA++ ++ V Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEI-VPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVA 250 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+A+ R +SR+D + D +VF LE V PG+T S F A GY+F Sbjct: 251 EAAVTAHRALRLRDLSRTDLIVDK-DDQVFVLETAVAPGLTDTSTFAMGIAAQGYAF 306 >gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928] gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 394 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 141/271 (52%), Gaps = 25/271 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LEL +PY SG+LASA+SMDK K++++ G V P Sbjct: 122 DVVLPLLHGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYE 181 Query: 112 LVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +V ++ + P +KP + GSS+GI K D LD ++ Sbjct: 182 VVRPRDWGTEEGRAAVRLAVEELGYPVFVKPARAGSSMGI--TKVDAPEELDQAIDAARR 239 Query: 162 HGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213 H ++L+E ++G E+ CGV+ G D E ++P FY ++ KY ++ Sbjct: 240 HDPKVLVEAAIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEV 299 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMT 269 +PA++ + ++++ A + +GC G++R DF + D + EIN PG T Sbjct: 300 DIPARLSAEEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFT 359 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P S+FP+M AG S+ EL+ ++ D + LR Sbjct: 360 PTSMFPQMWQAAGLSYPELIARLI-DTALLR 389 >gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2] gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 324 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + +++ VDR Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ +++++E ++DG ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYII-TAGEKLNLLEVNTTPGMTTTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] Length = 385 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYV 179 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ D + P +KP + GSS+GI K D LD + Sbjct: 180 VIRPREWDRDPAAARKKVVDFAGEHGWPLFVKPARAGSSIGI--TKVDGLAGLDEAIEEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++L+E V G E+ CGV+ G + EI P+ +Y +E KY ++ST Sbjct: 238 RRHDPKVLVEAAVRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 V+PA + + EV+RLA A +A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 VVPAPLTEEQTAEVRRLAVEAFEAASCEGLVRADFFLAEDGGFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M G S+ EL+ +++ A Sbjct: 355 YPKMWEATGVSYEELVDRLIQAA 377 >gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] Length = 353 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------------------------ASALEDAGFKV 33 +AV++GG SSE EVSL SG++ AL+D +K Sbjct: 5 LAVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKE 64 Query: 34 SQI------DVDRSVGLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 S++ D LV L D F VLHG +GEDG +Q + EL IPY Sbjct: 65 SKVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISP-PYVIKPL 133 G++ASA+ MDK +KQVV + G+ + V R +D P PY +KP Sbjct: 125 CGVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPS 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS G+ + + LL ++ H ++L+E+ + G EL C V+G + + + Sbjct: 185 NAGSSKGVSKAADREGLKKALLLAAE--HDRKILVEETIVGRELECAVLGGFDVKASGVG 242 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY++ S VL ++P +E++ A +A+ G+SR DF + Sbjct: 243 EILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLE 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ + EIN PG T +S++P + G + L+ Sbjct: 303 NDTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALI 340 >gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] Length = 380 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 33/279 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG GEDG +Q +LE++++PY G+LASA MDK +KQ+ + G+ Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158 Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147 V P I + NRF + +++ P +KP + GSS G+ ++ Sbjct: 159 DVAPGIALDARKFASDSTNRFAAYANEMLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESH 218 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196 + L + H ++L+EQ ++ E+ C V+ + ++++P + Sbjct: 219 DAKALAQAVFEASKHDWRVLVEQGINAREIECAVLAARDGEEPKVSLPGEIVLDKRQAGE 278 Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY ++ KY ++HV +PA +P + + V++ A A +A RG+SR D P Sbjct: 279 DQFYDFDSKYMDSAASHVEVPADLPAETLELVRKTALAAFKAADGRGLSRVDSFVTPEGH 338 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 339 -VMINEINTMPGFTPISMYPKAWEATGISYGDLITKLIE 376 >gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 341 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + +++ VDR Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ +++++E ++DG ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 349 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F +LHG GEDG +Q + EL IP LASAL MDK R+ ++VS GV V S+ Sbjct: 99 DLVFPILHGKNGEDGTLQGMFELSGIPVIGCNTLASALCMDKDRAHKLVSLAGVKVPKSV 158 Query: 112 LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 R ++ + +S P +KP++ GSS GI + + I + S++ H ++ Sbjct: 159 TFKRSEKNTALKKIETELSYPLFVKPVRAGSSFGITKVTEQAEINTAI--ESAFEHDTEV 216 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++E+ + G E+ C ++G +L V I + + F+ Y KY+ S +PA++ Sbjct: 217 IVEEAIGGFEVGCAILGIDNLTVRRIDEIELSNGFFDYTEKYTLKTSKIHMPARLSPKEE 276 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 K VQ A ++A+GC G +R D + P S ++ + E+N PG+T S +P M G S Sbjct: 277 KRVQETAVAIYKALGCSGFARVDMFYTP-SNEIIFNEVNTIPGLTSHSRYPNMMKGIGLS 335 Query: 285 FRELL 289 F ++L Sbjct: 336 FADML 340 >gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. 8004] Length = 373 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 11 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70 Query: 40 ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R+V A + D+ F ++HG GEDG +Q +L + + Sbjct: 71 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T D Q LI+ P +K Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 248 Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 249 CGEVVVHDA-FYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 308 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 353 >gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018] gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] Length = 381 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 35/280 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG GEDG +Q +LE++++PY G+LASA MDK +KQ+ + G+ Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158 Query: 106 PVCPSIL--VNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK-K 146 V P I V +F D+ + P +KP + GSS G+ ++ + Sbjct: 159 DVAPGIALDVRKFASDAANHFDAYANEILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESR 218 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------- 195 D D + +S H ++L+EQ +D E+ C V+ D + + P Sbjct: 219 DAKALADAVYEAS-KHDWRVLVEQGIDAREIECAVLAARDGDEPQASWPGEVVLDKREAG 277 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + FY ++ KY ++HV +PA +P + + V+ A A +A RG+SR D P Sbjct: 278 EDQFYDFDSKYMDSAASHVEVPANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPEG 337 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 338 H-VMINEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376 >gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 323 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 27/321 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKPD 52 +AV+ GG S E +VSL+SG+ A A + G V + ++ + + L D Sbjct: 3 VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFC-D 61 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + LHG GEDG++Q L+ L +PY SG+ ASA+ +DK +K V+ + G+PV P I Sbjct: 62 VVVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGIT 121 Query: 113 VNRFTMDS-----QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + Q L I P +KP GGSS G+ + + + ++ + Sbjct: 122 LRGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAAGLD-- 179 Query: 164 DQLLIEQYVDGIELTCGVM--GDASLDVT---EI-AVPKSDFYSYELKYSSLNSTHVLPA 217 Q+L+EQ + G E+ VM D ++ EI + P F+ KY+ + V+PA Sbjct: 180 SQVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPA 239 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + ++R A Q +GC G++R DF F P + E+N PG TP S FP M Sbjct: 240 PLDPALAASLRRTAVEVFQTLGCAGLARVDF-FVPADGQPVVNEVNTFPGFTPASQFPRM 298 Query: 278 AAYAGYSFRELLLWMVEDASC 298 A AG S+ EL+ ++E A Sbjct: 299 WAAAGMSYPELVHNLLETARA 319 >gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] Length = 358 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 144/258 (55%), Gaps = 18/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + E+++ PY +LAS++ MDK +K++ S G+PV + Sbjct: 88 DIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVCMDKDIAKRIFRSVGIPVVDDV 147 Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 LV +++ L+ P +KP+ GSS+GI K S+ LL++ + Sbjct: 148 LVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSVGISKAKDRDSLKEALLKAVKF 207 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LP 216 + ++L+E+ ++ E+ V+G++ + + EI K +FY YE KY S + + + +P Sbjct: 208 DT--KILVEKGINAREIEVAVLGNSHPEASYPGEIVSCK-EFYDYEAKYLSGDGSRIDIP 264 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AKI I ++++ A A +A+G G+SR DF D S+ ++ E N PG T +S++ + Sbjct: 265 AKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKDIYLNEANTLPGFTNISMYAK 324 Query: 277 MAAYAGYSFRELLLWMVE 294 M Y G + +L+ +++ Sbjct: 325 MWDYMGIGYSDLIEKLID 342 >gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] Length = 367 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LE+L IPY +G+LASA+ MDK+ K + + G+ I Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFAQAGLRQAKYI 155 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V ++ + + P +KP GSS+GI K+ + +++ ++ Sbjct: 156 AVTKYDWQKSGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFKYDR 215 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IE+ + G E+ GV+G+ V VPK +FY YE KY + ++PA + Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y+ ++++A A QA+ G++R DF F V+ E+N PG TP S+FP + + Sbjct: 274 KEQYETIKQMAITAFQALDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332 Query: 281 AGYSFRELL 289 +G + EL+ Sbjct: 333 SGVPYPELI 341 >gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 369 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 24/261 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG F EDG +Q +LE+ + Y SG+LASA+ MDK K V+++ G+PV P + Sbjct: 105 DVVFPVMHGPFAEDGTIQGLLEMAGVRYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYV 164 Query: 112 LV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SW 160 ++ + + P +KP + GSS GI ++ L+ L+++ + Sbjct: 165 VIRDRDWRTDRDRVLKEVQELGWPVFVKPARAGSSQGI-----SKAHDLEELEAAVGFAR 219 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213 H ++L+E + G E+ C V+ + +VP +F+ +E KY + + Sbjct: 220 EHDPKVLVEAAIAGREIECAVLESLGDEAARASVPGEVLVRGDHEFFDFEAKYIGDDMSL 279 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA IP D+ + ++ +A A +A+GC G+SR DF + R + EIN PG T +S+ Sbjct: 280 SVPADIPADVAENLRAMAVRAFEALGCEGLSRVDFFYTADGRLILN-EINTMPGFTAMSV 338 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 P++ A G S+ EL+ +++ Sbjct: 339 APQLWAATGLSYAELVERLIQ 359 >gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. 8004] Length = 368 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65 Query: 40 ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R+V A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T D Q LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 348 >gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 314 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 20/300 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL+ F + + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 GE+G VQ +LE+L +P+ +G + DK +K +V + G V P +V Sbjct: 66 GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGF-VTPGWVVLPHSTFR 124 Query: 114 ---NRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + +D+ + P ++KP +GGS+LG V+++ +P ++ + +GD +L E Sbjct: 125 ELGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAE 182 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++VDG+E+ V+ G +L EI VP+S Y Y +Y++ + PA++ K Sbjct: 183 RFVDGVEVAVTVIEGEDGPEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARLDDAAAK 241 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V LA AH+ +G R ISR+D + V +LE+N PG+T S P AG S Sbjct: 242 AVAELAVAAHRVLGLRDISRTDAVV-MADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSL 300 >gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX] gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 371 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 32/304 (10%) Query: 18 SGKACASALEDAG--FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 SG A AL+ G +V+ + R VG V D+ +LHG FGEDG +Q +LEL Sbjct: 75 SGARLALALDTPGAFLEVAPDSLPRLVGQV------DVVLPLLHGPFGEDGTIQGLLELA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISPP 127 + Y +G+ ASA SMDK+ K ++++ G+ P + V+ + +D+ + Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188 Query: 128 YVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 +KP + GSS+GI + D + + ++++ H ++++E + G E+ CGV+ Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAAR-AHDPKVIVEAGIQGREIECGVL--E 245 Query: 186 SLDVTE--IAVPKS-------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 SLD E +++P DFY +E KY S NS +PA +P ++ + V++LA A Sbjct: 246 SLDGGEPDVSLPAEIHVAEGYDFYDFEAKYLS-NSGLSIPADLPDEVTQRVRKLAAEAFD 304 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC G++R DF + +++ EIN PG TP S FP+M A +G + L+ ++ A Sbjct: 305 ALGCEGLARVDFFYGD-DGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTA 363 Query: 297 SCLR 300 R Sbjct: 364 LVRR 367 >gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From Xanthomonas Oryzae Pathovar Oryzae With Adp Length = 384 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 23 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82 Query: 40 --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ L+P D+ F ++HG GEDG +Q +L + + Sbjct: 83 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T D LI+ P +K Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A V Sbjct: 203 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 260 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 321 FLCADGRIVIN-EVNTLPGFTRISVYPKLWQASGLDYRGLITRLIE 365 >gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 367 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 171/348 (49%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 41 ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ K D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ + P + + NR D + L + P +K Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187 P GSS+G+ ++ + + S++H ++L+E + G E+ C V+G+ ASL Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI + + FYSY+ KY + V+ PA I ++ +++ +A A +A+ C G++R Sbjct: 244 -CGEIVLSDA-FYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARV 301 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P V EIN PG T +S++P++ A +G S+ +L+ ++E Sbjct: 302 DVFLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIE 348 >gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] Length = 324 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ + + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E ++DG+E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322 >gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] Length = 324 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++MGG S+E ++SL SG L F + +I VD+S Sbjct: 5 IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64 Query: 44 LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ + +K D FN +HG GEDG +QA L+ I T +AL+ +K + Sbjct: 65 SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ + ++ + + P +K K GSS GI + K + +P + Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ G+ L +TEI ++DF+ YE KY S Sbjct: 183 ENAYLADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITT-ENDFFDYEAKYEG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + ++V +A ++ + +G SRS+F+F + + F LE+N PG+T S Sbjct: 241 EITPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S +L + +A Sbjct: 299 ILPQQAAVAGISLSQLFESAITEA 322 >gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A] gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] Length = 324 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + +++ VDR Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E ++DG ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFGEAQEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] Length = 364 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + Q + P +K Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDDPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348 >gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 366 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 15/243 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG +GEDG VQ +LEL IPY G+LASA+ MDK + + + G+P + Sbjct: 104 DVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANAMFDASGIPHTKWL 163 Query: 112 LVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R+ ++S + P +KP GSS+GI K L + + Sbjct: 164 SATRWEIESDPDGVCDGVIAKLGWPIFVKPANAGSSVGIT--KAHDRDELKAAIRLALAN 221 Query: 163 GDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +++ E +VDG E+ C V+G S EI + ++FY+Y+ KY + S V+PA++ Sbjct: 222 DRKVVFEAFVDGHEVECAVIGSDPAVSTRPGEI-LAGAEFYTYDDKYKNGVSQVVIPARL 280 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + EV+ A +A+ A+GC G++R DF + + +V EIN PG TP+S++P++ Sbjct: 281 PEEKLDEVKTYAAMAYTALGCEGLARCDFFVEKDTGRVLINEINTLPGFTPISMYPKLME 340 Query: 280 YAG 282 + G Sbjct: 341 HEG 343 >gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 162/346 (46%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+E EVSL S K A++ F V Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65 Query: 34 ------SQIDVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 S+I V G+V L + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P + + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY + V+PA I I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + EL+ ++E Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIE 348 >gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 386 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 25 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84 Query: 40 --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ L+P D+ F ++HG GEDG +Q +L + + Sbjct: 85 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T D LI+ P +K Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A V Sbjct: 205 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 262 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 323 FLCADGRIVIN-EVNTLPGFTRISVYPKLWQASGLDYRGLITRLIE 367 >gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ + + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E ++DG+E+TCG + +TE+ V ++++ Y+ KY+ S Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKNKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 300 FIPQQVRAANLESKDVMTDIIEN 322 >gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 361 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 170/340 (50%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ SG +A++ + V I + + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 46 ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LA+L + D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV + + RF + ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI +K + L + ++ + D++L+E+ +DG E+ V+G+ + V+ +I Sbjct: 187 VGISHVKSEADYLPALAE--AFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY ++T + +PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +V + E+N PG T +S++P++ AG + +L+ ++E Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIE 344 >gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] Length = 326 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 141/257 (54%), Gaps = 17/257 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG +GEDG VQ + EL +IPY +G+LAS+ MDK +K+++++ G+PV P + Sbjct: 71 DVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLTAEGLPVAPEV 130 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + D + + P +KP +GGSS+G V K ++ +++L+ Sbjct: 131 ILKGRTELSADEKAQLGLPVFVKPARGGSSIG--VSKVTDWAEFSRAVEVAFESDNKVLV 188 Query: 169 EQYVDGIELTCGVM--GDASL------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 E + G E+ GV+ D S+ + I + FY ++ KY + +PA + Sbjct: 189 EPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEGVSAQIPAPLD 248 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAA 279 D+ + ++ A A +A+GC G+SR DF +++ F++ EIN PG TP+S++P++ A Sbjct: 249 PDLIQTLRETAVSAFRALGCEGLSRVDFF---VTKDAFYINEINTFPGFTPISMYPQVLA 305 Query: 280 YAGYSFRELLLWMVEDA 296 G + LL ++E A Sbjct: 306 ATGVDYAALLDALIEGA 322 >gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis] Length = 349 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/339 (27%), Positives = 160/339 (47%), Gaps = 51/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE EVSL S + L F++ +I +D L Sbjct: 7 IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66 Query: 48 ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + +PD+ F +LHG GEDG +Q + EL+ IPY G Sbjct: 67 TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGG 136 + SA+ MDK + S GV P++++ T + + I P +KP + G Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIR--TRNCKDEIDKFIEKNDFPIFVKPNEAG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194 SS GI K ++ L+ + ++ + ++I++ + G E+ C V+G+ L V E Sbjct: 185 SSKGI--NKVNEPDKLEDALTEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVS 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDF+ Y KY +++ +PA I ++ E+++ A L ++ +GC G++R DF + Sbjct: 243 LNSDFFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLSD-N 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ EIN PG T S +P+M G +++E++ ++ Sbjct: 302 NEILLNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLI 340 >gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] Length = 361 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 138/253 (54%), Gaps = 17/253 (6%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 ++K D F VLHG GEDG +Q I ++ EIP+ +++SA MDK + ++ + GV Sbjct: 96 TNIKVDAVFPVLHGKNGEDGTIQGIFQMAEIPFVGCDLISSACCMDKDVTHTILEAHGVR 155 Query: 107 VCP---------SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 S L + + + L P YV KP GSS+GI + + + Sbjct: 156 TAKWISMIYRDISKLDEKCRLMEKELGYPMYV-KPANCGSSVGITKAHDFEELKAGI--K 212 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 ++ H ++++EQ ++GIEL C VMG+ + V EIA ++FY Y+ KY++ +S Sbjct: 213 LAFTHDHKVVVEQGINGIELECAVMGNDEPFASTVGEIAAA-NEFYDYDAKYNNSDSKTY 271 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA++P ++ +E++ A A +A+GC G++R DF +V EIN PG T +S++ Sbjct: 272 IPARVPDEVIEEIRETAVRAFKAMGCEGLARCDFFLSDKG-EVILNEINTLPGHTQISMY 330 Query: 275 PEMAAYAGYSFRE 287 P++ + G S+ E Sbjct: 331 PKLMEHEGISYAE 343 >gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] Length = 324 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 168/322 (52%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL+SG + + F +I + D Sbjct: 4 VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D+ FN +HG GEDGL+QA ELL IP T +AL+ +K V+ Sbjct: 64 SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N ++ + +++ P +KP K GSS GI +K L ++ Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEF-LPAIE 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ G + L +TEI V ++DF+ YE KY S Sbjct: 183 -NAYKEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEI-VSENDFFDYEAKYLG-KSK 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ +++ ++ A++ + +G SRS+F+ ++ + F LE+N PG+T S Sbjct: 240 EITPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 I P+ A AG S EL +E Sbjct: 298 ILPQQAREAGISLPELFENAIE 319 >gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] Length = 330 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 166/326 (50%), Gaps = 38/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG SSE +S+ SG L+ + + V I + D Sbjct: 6 IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDG++QA L+LL IP T +AL+ +K V+ Sbjct: 66 SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+ + L+N+ D+ H + P +K K GSS G+ + + L+ Sbjct: 126 KAYGIKTATNYLLNK--GDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEE--LEG 181 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLN 210 ++ D+++IE +++G E++ GV+ G+ +L VTEI V +DF+ Y+ KY Sbjct: 182 AIEVAFKEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEI-VSDNDFFDYQAKYEG-K 239 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S + PA+I + + VQR A + + +G++R++F+F + + +LE+N PG++P Sbjct: 240 SQEITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIFH--NGEPHFLEVNTTPGLSP 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A AG S EL ++E A Sbjct: 298 ASIIPQQAKVAGISLPELFDNVIEQA 323 >gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] Length = 405 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG +GEDG +Q +LE++ +PY G+LASA MDK +K ++ + G+ Sbjct: 125 LGHV--DAVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGI 182 Query: 106 PVCPSILVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK---- 145 PV P I V+ + DS P P +KP + GSS G+ + Sbjct: 183 PVAPGITVDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKAD 242 Query: 146 -KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 ++ L + H ++L+E+ + E+ C V+ D + P Sbjct: 243 ATERQADLAAAVHEAARHDWRVLVEEGIKAREIECAVLAPRHGDKPRTSWPGEIVLDEPG 302 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV +PAK+P + +EV+R+A A A+ G+SR D F Sbjct: 303 NGAFYDFDSKYMDSSASHVEVPAKLPQETLQEVRRVAARAFIAVDGDGLSRVD-TFVTEE 361 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++ + G S+REL+ ++E Sbjct: 362 GTVIVNEINTLPGFTPISMYSKAWEATGVSYRELITTLIE 401 >gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] Length = 400 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG +GEDG +Q +LE++ +PY G+LASA MDK +K ++ + G+ Sbjct: 120 LGHV--DAVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGI 177 Query: 106 PVCPSILVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK---- 145 PV P I V+ + DS P P +KP + GSS G+ + Sbjct: 178 PVAPGITVDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKAD 237 Query: 146 -KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 ++ L + H ++L+E+ + E+ C V+ D + P Sbjct: 238 ATERQADLAAAVHEAARHDWRVLVEEGIKAREIECAVLAPRHGDKPRTSWPGEIVLDEPG 297 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV +PAK+P + +EV+R+A A A+ G+SR D F Sbjct: 298 NGAFYDFDSKYMDSSASHVEVPAKLPQETLQEVRRVAARAFIAVDGDGLSRVD-TFVTEE 356 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++ + G S+REL+ ++E Sbjct: 357 GTVIVNEINTLPGFTPISMYSKAWEATGVSYRELITTLIE 396 >gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 168/346 (48%), Gaps = 54/346 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG SSE EVSL S + ++ + ++V + + + +L Sbjct: 7 LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66 Query: 47 ---AHLKPD----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A L PD + F VLHG GEDG +Q + +L +IP+ Sbjct: 67 GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 G+LASA+SMDK +K V++ VP +LV + + S PY IKP Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI + + L ++ H ++LIE+ + G E+ VMG+ + V+ + Sbjct: 187 NAGSSVGISKANNKEELISGLYEAVK--HDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY++ S V+ A +P +I ++++ A A+ +G+SR DF F Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDF-FV 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + ++ + EIN PG T +S++P + A G S +E++ ++E AS Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349 >gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] Length = 377 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 143/274 (52%), Gaps = 28/274 (10%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D F VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+++ G+ Sbjct: 103 LGHI--DAVFPVLHGVYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGI 160 Query: 106 PVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVI-----KKDQSIPL 152 P P I+V+ + + ++ P +KP + GSS G+ + ++ Q L Sbjct: 161 PTAPGIMVDARHATGESVYDEVKKAKLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAAL 220 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYS 201 + + + H ++L+EQ +D E+ C V+ A D E + P FY Sbjct: 221 EAAVAEAGKHDWKVLVEQGIDAREIECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYD 280 Query: 202 YELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 ++ KY +++HV +PA +P+ + ++V+ +A A A+ G+SR D P V Sbjct: 281 FDSKYMDSSASHVEVPANLPVSVLEDVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVN 339 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG TP+S++P+ +G + EL+ ++E Sbjct: 340 EINTMPGFTPISMYPKAWDASGIGYTELITRLIE 373 >gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010] gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010] Length = 381 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q +LE++++PY G+LASA MDK +K ++++ G+ Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149 PV P I V+ RF D+ L++ P +KP + GSS G+ ++ Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLAQVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220 Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS----------- 197 +H D ++LIEQ +D E+ C V+ + + + P Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGGD 280 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY +++HV +PA +P + ++V+ A A +A+ G+SR D P + Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAIKAFKAVDGAGLSRVDTFVTP-DGE 339 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ +++ Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377 >gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] Length = 355 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 157/338 (46%), Gaps = 47/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLA--------- 47 + +L GG S+E EVSL + KA AL+ + + I + D G +L Sbjct: 5 ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64 Query: 48 ------HLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + P D+ F +LHG GEDG VQ +LELL +PY +G+LAS Sbjct: 65 EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138 + MDK+ K + + G+ + R ++ + P +KP GSS Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPK 196 +GI K L+ ++ + ++++E+ V E+ GV+G D V V K Sbjct: 185 VGISKCK--NRTELEAAFKEAFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAK 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY + ++PA IP +YK+ A A +A+ C G+ R+DF F + Sbjct: 243 KDFYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADF-FVTEDER 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP S+FP + AG + +L+ ++E Sbjct: 302 VIINEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIE 339 >gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] Length = 510 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 137/261 (52%), Gaps = 14/261 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + EL+ PY G+LASA MDK+ SK + S G+PV P + Sbjct: 249 DVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAGMDKVASKMLFESAGIPVGPYV 308 Query: 112 LVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 R + D +I P IKP GSS+GI + + ++ ++H Sbjct: 309 YFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGISKAHNREEFIDGVNEALRYDH- 367 Query: 164 DQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKI 219 ++++E +++ E+ C V+ G+ + V +FY YE KYS + +S V+PA+I Sbjct: 368 -KIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEFYDYEAKYSDNQDSKIVIPAQI 426 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + ++++ A A + I +SR DF + ++ EIN PG T +S++P+M Sbjct: 427 SDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIYINEINTMPGFTNISMYPKMWE 486 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G S+ EL+ +++ A+ R Sbjct: 487 NMGVSYAELVEKLIQGAAVKR 507 >gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 367 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 40 --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 R V L+ L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T D LI+ P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A V Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 304 FLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRGLITRLIE 348 >gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 326 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 146/304 (48%), Gaps = 22/304 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL G +V DVD ++ L P + F VLHG Sbjct: 19 VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78 Query: 63 GEDGLVQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG ++ +LEL+ +PY G A S ++ VP ++ + F Sbjct: 79 GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138 Query: 117 ---TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 MD + P +KP +GGS+ G + Q + L+ S + + D L+E+ V Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAALV--SCFAYSDSALVEEQV 196 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL GV+ G +L EI VP Y Y +Y++ + PA++ E Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEI-VPDGGVYDYAARYTAGRTEFFCPARLDPATVAEAT 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF--- 285 +A AH+ +G R +SR+D + R V +LE NV PG+T S FP AA AG F Sbjct: 256 EVALTAHRVLGLRDLSRTDVIVGTDGR-VTFLETNVAPGLTETSTFPMGAAAAGLDFAVA 314 Query: 286 -REL 288 REL Sbjct: 315 CREL 318 >gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 330 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + S + + V +D++R Sbjct: 5 IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S H+ D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 65 SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124 Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 GV V SILV R + +D + + + P +KP GSS G+ +K DQ P Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAP-- 182 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209 + D +IE ++DG E++ G V G+ L TE+ V ++F+ Y+ KY+ Sbjct: 183 -ALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYNG- 239 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQP 266 + PA+I + + V ++ +GC GI R D++ + K+ +E+N P Sbjct: 240 QVEEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMTP S P+ AG +++L +VE+ Sbjct: 300 GMTPTSFIPQQVRAAGMEMKDVLSDIVEN 328 >gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] Length = 381 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q +LE++++PY G+LASA MDK +K ++++ G+ Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149 PV P I V+ RF D+ L++ P +KP + GSS G+ ++ Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220 Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 +H D ++LIEQ +D E+ C V+ + + + P Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 280 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY +++HV +PA +P + ++V+ A A +A+ G+SR D P + Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 339 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ +++ Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377 >gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] Length = 355 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 162/345 (46%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 +A+L GG SSE EVS SG A ++ + + I + + Sbjct: 7 VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66 Query: 43 GLVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTHS 82 G A L PD A F VLHG +GEDG Q I EL +IPY Sbjct: 67 GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 +L+SA +MDK +K V++ CG+P R +D + +S P +KP Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS G+ + L +++ + +++ E+ + G EL C ++G + + + Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAAAQDC--KVIAEETIVGRELECALLGGWDAEASGVGE 244 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY Y+ KY S S V+ +P +E++ +A +A+ CRG+SR+DF + Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + +V + EIN PG T +S++P++ AG EL+ ++E A+ Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349 >gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] Length = 349 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48 + +L GG S E EVS+ S +A A AL ++V I + + VLA Sbjct: 6 IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 P ++ F +LHG GEDG +Q +L L+++P SG+L SA+ Sbjct: 66 GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGS 137 +MDK+ KQV G+ ++R + S + P P +KP GS Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAV 194 S+GI ++ + L ++S++ ++++E V E+ C V+G+ + V EI+ Sbjct: 186 SVGIAKVRSRSELETALDSAASYDR--RIIVEAGVVAREVECAVLGNDNPKASVVGEISY 243 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ +T +PA +P + +++Q +A A A+ G+SR DF + + Sbjct: 244 -TSDFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEAT 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +V E+N PG T S++P++ A G F +L+ ++E Sbjct: 303 GEVLINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIE 342 >gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] Length = 358 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVS-----------------------------LSSGKACASALEDAGF 31 + VL GG+S+E +VS L + KA A AL D Sbjct: 8 LVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIA-ALTDGTP 66 Query: 32 KVSQIDVDRSVGLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +DV +V L L P + +LHG GEDG +Q +LEL ++PY +G+L Sbjct: 67 LPDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVL 126 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSS 138 +SAL MDK +K V + G+P C + N D+ + P +KP GSS Sbjct: 127 SSALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI K LD + + + + +++E+ V G E+ V+GD + + + EI P Sbjct: 187 VGI--TKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIE-P 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S+FY YE KY + + V+PA + + +V+ LA A+ C G++R DF ++ R Sbjct: 244 GSEFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGR 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG TP S++P++ G S+ +L+ +V Sbjct: 304 GWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLV 341 >gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] Length = 324 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ + + I + Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E +++G+E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 AKAFAEAKEVLVEAFMEGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322 >gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171] Length = 381 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q +LE++++PY G+LASA MDK +K ++++ G+ Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149 PV P I V+ RF D+ L++ P +KP + GSS G+ ++ Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220 Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 +H D ++LIEQ +D E+ C V+ + + + P Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 280 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY +++HV +PA +P + ++V+ A A +A+ G+SR D P + Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 339 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ +++ Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377 >gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9] Length = 364 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R ++ + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 369 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/312 (32%), Positives = 155/312 (49%), Gaps = 24/312 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAH--LK 50 V+ GG S E EVSL+S A AL AG V+ + +DR VGL A L+ Sbjct: 25 VIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEVLR 84 Query: 51 PDLA-FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 +A +LHG GEDG + A+ EL +PY S + A AL+MDK +K V + GV P Sbjct: 85 SCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRTAP 144 Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ILVNR + +++P P V+KP+ GSS G+ ++ + + + + + D++L+ Sbjct: 145 GILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAVEAALTLD--DRVLV 202 Query: 169 EQYVDGIELTCGVMG--DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 E+ V G E+ V+G D + V EI + F+ KY ++ ++PA + Sbjct: 203 EEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYDG-SARFLVPAPLSDAQ 261 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ A + A+GC G++R DF E+N PG T S P M A AG Sbjct: 262 LGVLREAAVTVYDALGCAGVARVDFFL--TDAGPVLNEVNTMPGFTSHSQVPRMFAAAGV 319 Query: 284 SFRELLLWMVED 295 + ELL ++ D Sbjct: 320 PYPELLELLIAD 331 >gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327] gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327] Length = 364 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 13/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+AF LHG++GEDG +Q L+ +IPY G+ +SALSMDK +K + GV V Sbjct: 101 DVAFLTLHGSYGEDGKIQGCLDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFM 160 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S+ + D Q + + P +KP GSS+GI + + L ++ + + Sbjct: 161 SVTSADYAADPQAICNAVTERFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDA 220 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++L+E+ + G E+ V+G D V +P SDFY +E KY ++ V+PA +P Sbjct: 221 --KVLVEETITGREVEVAVLGNDDPIASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLP 278 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ V+ A +A+GC G++R DF + + ++ EIN PG T +S++P + + Sbjct: 279 GEVSAAVRNAALTVFKALGCSGMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSA 338 Query: 281 AGYSFRELL 289 +G F EL+ Sbjct: 339 SGVEFDELI 347 >gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70] gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70] Length = 364 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLV------ 45 + +L GG S E VSLS+ A +A++ F V I + +R G V Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64 Query: 46 -------------------LAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 +A K D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVI 130 +G+LASA+ MDK+ K + + G+ + + + Q L P +V Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFV- 183 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLD 188 KP GSS+GI K Q L + ++ + ++++E+ + G E+ GV+G D Sbjct: 184 KPANAGSSVGITKCK--QRDDLKAAFAEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICS 241 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 242 VVGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADF 301 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + EIN PG TP S+FP + ++G S+ EL+ +++ Sbjct: 302 FLTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQ 346 >gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 275 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 138/251 (54%), Gaps = 18/251 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56 +AVL GG S+EREVSL+SG+ L DAG D +R L+ LK + AFN Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115 LHG +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 68 ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127 Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ P +KP GSS+ ++ +K ++P L ++++ H +++E+ Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185 Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 ++ G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKR 244 Query: 230 LAFLAHQAIGC 240 +A A +GC Sbjct: 245 IARRAFDVLGC 255 >gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 375 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG S+E EVSL S K +++ F+V +D+ Sbjct: 6 VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65 Query: 42 ------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + ++ ++ D+ F ++HG GEDG +Q +L + + Sbjct: 66 YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLIS---PPYVIK 131 P+ S +L SA+SMDK +K+++ + V PSI +NR +I+ +K Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187 P GSS+G V K I D + ++ D++L+E ++G EL C V+G+ ASL Sbjct: 186 PANQGSSVG--VSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQASL 243 Query: 188 DVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI V +FYSYE KY + + V+PA I ++ +Q++A A QA+ C G++R Sbjct: 244 -CGEI-VLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARV 301 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D +F + KV E+N PG T +S++P++ +G S+ L+ ++E Sbjct: 302 D-VFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIE 348 >gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 367 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 136/257 (52%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LE+ +IPY + + ASA +MDK +K++ ++ G+PV P Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYA 166 Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + + + + P +KP + GSS GI K D LD ++ ++L+ Sbjct: 167 VLRAGMSLSDEDKERLGLPVFVKPSRAGSSFGI--TKVDDWADLDAALVTAREIDSKVLV 224 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAV-------PKSDFYSYELKYSSLNST--HVLPAKI 219 E V G E+ CGV+ + E +V D+Y +E KY + + +PA + Sbjct: 225 EGAVVGREIECGVLEGEAGGAPEASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADL 284 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + ++V+ A A A+ C G++R DF P V+ EIN PG TP S+FP M + Sbjct: 285 PEPVARQVRDYATRAFTALDCSGLARVDFFVTP-QMDVYLNEINTMPGFTPTSMFPRMWS 343 Query: 280 YAGYSFRELLLWMVEDA 296 +G + +L+ ++ A Sbjct: 344 ASGLEYPKLVNRLIRTA 360 >gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC 27064] gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 390 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 29/266 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+L+SA+ DK K+V +S G+PV P Sbjct: 125 DVVFPVLHGPYGEDGTLQGLLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYT 184 Query: 112 LVN----------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ FT D P +KP + GSS+GI K D LD Sbjct: 185 VIRPREWEQDASAARKKIVDFTGDHGW----PVFVKPARAGSSIGI--TKVDDLSGLDEA 238 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLN 210 + H ++L+E + G E+ CGV+ AS+ V DFY +E KY + Sbjct: 239 IEEARRHDPKILVEALLRGREIECGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKYID-S 297 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 ++ ++PA + + EV+RLA A A C G+ R+DF V EIN PG TP Sbjct: 298 ASGIVPAPLTEEQTAEVRRLAVAAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTP 356 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S++P M G + EL+ +++ A Sbjct: 357 ISMYPRMWQETGVGYAELVDRLIQAA 382 >gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] Length = 350 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 53/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER VSL+SG AL+ G V+ +D+ Sbjct: 3 IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62 Query: 39 --------------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILE 73 D S L ++ D+ F LHG GE+G VQA+L+ Sbjct: 63 KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + EIPYT S LA+ ++M K SK+++ +P + R + P V+KP Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G ++ + + + + ++ ++ LIE+++ G E + GV+ + L EI Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDALRFD--NEALIEEFIKGREFSLGVINEQPLPAIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +Y +E K+ + N+T + P +P D+++ ++++A A A+G +R DF + Sbjct: 241 V-NDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWS 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P ++ +E N PGMTP+S+ P+ A G S+ +L +V Sbjct: 300 P-ETGLYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIV 340 >gi|58698111|ref|ZP_00373034.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535357|gb|EAL59433.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 213 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 121/193 (62%), Gaps = 3/193 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEI 192 V+ D ++ E+ Sbjct: 185 AVLLDEAIGTIEV 197 >gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 394 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q +LE++++PY G+LASA MDK +K ++++ G+ Sbjct: 116 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 173 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149 PV P I V+ RF D+ L++ P +KP + GSS G+ ++ Sbjct: 174 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 233 Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 +H D ++LIEQ +D E+ C V+ + + + P Sbjct: 234 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 293 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY +++HV +PA +P + ++V+ A A +A+ G+SR D P + Sbjct: 294 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 352 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ +++ Sbjct: 353 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 390 >gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 376 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 146/260 (56%), Gaps = 18/260 (6%) Query: 50 KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 KP D+ F VLHG GEDG +Q + EL IPY G+L +A+ MDK SK + G+P Sbjct: 102 KPIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQG 161 Query: 109 PSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ NR +++ + ++ P +KP GSS+G+ +S+ L+ ++ Sbjct: 162 DYLVFNRKQVNNRLEEAVAQVESTLTYPCFVKPANAGSSVGVNKASDRESLEKALIIAAK 221 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VL 215 + ++L+E+++DG E+ C V+G+ + V E+ VP ++FY YE KY +S+ V+ Sbjct: 222 NDR--RILVEEFIDGREIECAVLGNDEPVASTVGEV-VPCNEFYDYEAKYQVGDSSKVVI 278 Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+ + + ++++ A A + + C G+SR DF + ++ EIN PG T +S++ Sbjct: 279 PAENLSTETVEKIREYAVRAFKCLDCAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMY 338 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P++ A +G + +L+ ++E Sbjct: 339 PKLWAASGIPYSQLIDKLIE 358 >gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] Length = 355 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 164/353 (46%), Gaps = 59/353 (16%) Query: 3 VLMGGISSEREVSLSSGKA-CASALED----------------------------AGFKV 33 VL GG+S ER+VSL+SG C + LE+ AG ++ Sbjct: 5 VLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGLEI 64 Query: 34 SQIDVDRSVGL-VLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 ++ + L L +PD + F LHG+ GE+G +QA +L Sbjct: 65 AKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIK 131 L I YT ALSM+K+ +KQ+ GVP + ++T D S+ P V+K Sbjct: 125 LGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS+G+ + ++ + +S N ++L+IE Y+ G E V+ +L + E Sbjct: 185 PCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPLVE 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ----RLAFLAHQAIGCRGISRSD 247 I +PK ++YE KY + + + P P+ I +E Q R A A+ +R+D Sbjct: 245 I-IPKDGVFNYENKYQAGGAQEICP---PVSIDEETQQRMMRAGEEAFAALRMDVYARAD 300 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 F+ D + + LE+N PGMT S+ P+ A AG + EL ++E++ R Sbjct: 301 FIIDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353 >gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] Length = 357 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 46/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG+S+E +VS S +A + + +++ + +D+ Sbjct: 8 LVVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAEL 67 Query: 45 ---------------VLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VLA DL F +LHG GEDG VQ +LEL ++PY G+LAS Sbjct: 68 PNSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLAS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLG 140 ++ MDK +K+V + +P C + D + +++ P +KP GSS+G Sbjct: 128 SVCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197 V + + LD + + + D ++IE+ V G E+ V+G+A+ D + E+ P S Sbjct: 188 --VSRAETLEELDAAINVALRYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVK-PGS 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY + + ++PA + + +V+ LA A A+ C G++R DF ++ R Sbjct: 245 EFYDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGW 304 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG TP S++P+M G + +L+ +V Sbjct: 305 LLNEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLV 340 >gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896] Length = 353 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 138/253 (54%), Gaps = 10/253 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F LHG GEDG +Q ++E + IPY ++SA+ MDK +K++V GV P + Sbjct: 95 DVVFPALHGPNGEDGKLQGLMEFVNIPYVGCNSISSAICMDKEITKRLVGIEGVRQVPYV 154 Query: 112 LVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ + + L I P +KP GSS+G+ + Q + + +S ++ D++ Sbjct: 155 ILYEGVVAEEKLLEMEEIGYPLFVKPANMGSSVGVSKAENQQELLQAIRVASKYD--DKV 212 Query: 167 LIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++E+ +D +EL +GD A P+ FY Y+ KY + ++ +PA I + Sbjct: 213 IVEKGIDALELEIAALGDGKDAYFSTVGCIKPRDIFYDYDSKYLTNDADFYIPAPISFEK 272 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 E++ +A A+ A+ C G+SR DF D ++++++ EIN PG T +S++P++ Y G Sbjct: 273 ETELREMARKAYTAMLCEGLSRIDFFMDKETQEIYFNEINTMPGFTAISLYPQLMDYDGV 332 Query: 284 SFRELLLWMVEDA 296 +EL+ +++ A Sbjct: 333 GAKELIGRLIDYA 345 >gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] Length = 366 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/347 (27%), Positives = 168/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S+E EVSL S K A++ F V + +D+ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 41 ---------SVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ A + D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I + R + + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ + + + + ++H ++++E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNEEPQAST 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI V S+FYSY+ KY + V+PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVV-SSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G +++L+ ++E Sbjct: 303 VFLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIE 348 >gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] Length = 327 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 168/325 (51%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG S E +VSL SG+ +L+ + V ++ V D Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 41 SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV L L+ D+ FN +HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + D +I+ P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++L+E ++DG+E++ GV+ G+ L +TEI +P+++F+ YE KY S Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-S 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA++ V+ +A A+ ++G +G SRS+++ ++ + LE+N PG +P Sbjct: 242 QEITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPA 299 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A G S ++L VE A Sbjct: 300 SILPQQARIYGISIKDLCGNEVEKA 324 >gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1] Length = 364 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 357 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL------------------------EDAGFKV--- 33 + +L GG S E EVS+ S A A AL E+ KV Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65 Query: 34 --SQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ + +V L K DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136 + MDK+ K + G+P V R + S + P P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI 192 SS+GI ++ Q + L +++++ ++++E V E+ C V+G+ AS+ V EI Sbjct: 186 SSVGIAKVRSRQELETALDNAATYDR--RIIVEAGVVAREVECAVLGNDHPQASV-VGEI 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + SDFY YE KY+ + ++PA + + +++Q ++ A A+ G++R DF + Sbjct: 243 SF-NSDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVE 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ EIN PG T S++P++ A G SF +L+ +++ Sbjct: 302 STGEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQ 343 >gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245] gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245] Length = 363 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 134/254 (52%), Gaps = 23/254 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F LHG++GEDG VQ +L+ + IPYT G+ ASA++MDK +K + GV PSI Sbjct: 101 DVVFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLCAADAGVATAPSI 160 Query: 112 LVNRFTMDSQ-HLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 T+D+ +L P P +KP GSS+GI + ++P L + Sbjct: 161 -----TLDADSYLADPEPVHELVDSTFGYPLFVKPASLGSSVGISKVHLPAALPEALKVA 215 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 S++ ++L+E V G E+ V+G+ V P SDFY ++ KY + + Sbjct: 216 CSYDR--KILVEAAVSGKEIEVAVLGNDRPVASVPGEVEPGSDFYDFQDKYIHNTAKTFI 273 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++P + V+ A ++A+GCRG+SR DF + + + EIN PG T +S++P Sbjct: 274 PARLPDKLLDSVRCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFTDISMYP 333 Query: 276 EMAAYAGYSFRELL 289 ++ +G F L+ Sbjct: 334 KLFEASGIPFTALI 347 >gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638] Length = 364 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 171/349 (48%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P N T ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAP---FNTLTRANRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] Length = 368 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 171/349 (48%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F+V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65 Query: 41 ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 +V LV L L D+ F ++HG GEDG +Q +L + Sbjct: 66 LIALNHSNNNVALVPGQQSRQLIAADGAGALGQL--DVVFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYV 129 +P+ +G+L SA+SMDK +K+++ G+ V P + + NR D L + P Sbjct: 124 NLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G+ ++ Q + + S++H ++L+E + G E+ C V+G+ Sbjct: 184 VKPANQGSSVGVSRVQDRQQYEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDQPQA 241 Query: 190 T---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + EI V +FYSY+ KY + V+PA I +++++A A +A+ C G++R Sbjct: 242 SVCGEI-VLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D +F V EIN PG T +S++P++ A +G +R+L+ ++E Sbjct: 301 VD-VFLTADDNVIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIE 348 >gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 372 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 133/258 (51%), Gaps = 26/258 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG FGEDG +Q +LEL +PY SG+LASA MDK K V++ G+PV P Sbjct: 106 DVVLPLLHGPFGEDGTIQGMLELAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYT 165 Query: 112 LVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SW 160 ++ +D + P +KP + GSS+GI ++ LD L + + Sbjct: 166 VLTPSAWRRDRAACLDQVASLGLPVFVKPARAGSSIGITRVES-----LDRLVEAIEEAQ 220 Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDASLDVT---EIAVPKSD--FYSYELKY-SSLNS 211 H ++++E + G E+ V+ GD T EI V ++ FY YE KY S Sbjct: 221 RHDPKVIVEAAITGREIEVAVLEGRGDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGV 280 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA +P + E +RLA A A+GC G++R DF + P S + EIN PG TP Sbjct: 281 DLRCPADLPPGVADEARRLAAEAFDALGCEGLARVDFFYTP-SGTLVVNEINTMPGFTPF 339 Query: 272 SIFPEMAAYAGYSFRELL 289 S+FP + +G ++ EL+ Sbjct: 340 SMFPLLWERSGVAYPELI 357 >gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5] gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5] Length = 351 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 57/344 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 VL GG+S+ER+VSLSS L + G +DV AHL Sbjct: 5 VLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGLEI 64 Query: 50 -----------------KPD------------------LAFNVLHGNFGEDGLVQAILEL 74 +PD + F LHG GE+G +QA +L Sbjct: 65 AKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131 L I YT L A++MDK +KQ+ G+ + +++ + + P V+K Sbjct: 125 LGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ + L SSS+ + D+++IE+Y+ G E CG++ +L E Sbjct: 185 PCSGGSSIGVYIVTTESEYEEAL--SSSFRYEDEVVIEEYIKGREFACGIIDGEALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ F+ Y KY + + V PA I D + L A++A+ SR+DFL D Sbjct: 243 I-IPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFLLD 301 Query: 252 PLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 SR ++ LE+N PGMT S+ P+ A +G + +L +++ Sbjct: 302 --SRGNLYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQ 343 >gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 356 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 143/259 (55%), Gaps = 21/259 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ VLHG +GEDG VQ + EL IPY +G+LASA+ MDK +K+++ + G+PV P Sbjct: 101 DVIVPVLHGPYGEDGTVQGLFELSGIPYVGAGVLASAVGMDKEFTKKLLVAEGLPVAPQE 160 Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +L T+D + + P +KP +GGSS+G+ + + + L + ++ D++LI Sbjct: 161 VLTGEATLDDLQKERLGLPVFVKPARGGSSIGVSKVSAWEDLEAAL--TLAYESDDKVLI 218 Query: 169 EQYVDGIELTCGVMG--DASLDVTEIAVP---------KSDFYSYELKYSSLNSTHVLPA 217 E + G E+ GV+ D SL + +VP + FY ++ KY + +PA Sbjct: 219 EPEISGAEVEVGVLERPDGSL---QASVPAKILGTTESEEGFYDFDAKYIDEGVSAAIPA 275 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + ++ E+++ A A +A+G G+SR DF S + E+N PG TP+S++P++ Sbjct: 276 PLSEELTAELRQRAIEAFRALGASGLSRVDFFVSDYSYCIN--EVNTFPGFTPISMYPQV 333 Query: 278 AAYAGYSFRELLLWMVEDA 296 A G + ELL +++ A Sbjct: 334 FAAVGVGYAELLDTLIQTA 352 >gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] Length = 324 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + +++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ +++L+E +++G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLEIKDVMTDIIEN 322 >gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4] gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4] Length = 345 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 168/337 (49%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKV-------------- 33 + V+ GGIS E VS+ S + A LE D +K+ Sbjct: 6 IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65 Query: 34 SQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + + DR V GL++ ++ D+ VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 SAL MDK + V S G+ P+ T+D+ P +V KP + GSS G+ + Sbjct: 126 SALCMDKSLAYLVTDSAGI-ATPNFWAGSANETVDAGKFTYPVFV-KPARSGSSFGVTKV 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTE---IAVPKSDFY 200 +++ +P L ++ ++ ++LIE+ V+G E+ C V+G+ A L V E I + F Sbjct: 184 SREEDLPSALADAAQFD--SKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFK 241 Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256 ++ + S NST ++PA IP + VQ A ++A+GCRG++R D FL + Sbjct: 242 IHQEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE--DGT 299 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V E+N PG+T S +P M A AG SF E+L MV Sbjct: 300 VMLNEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMV 336 >gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] Length = 324 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + S+ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + +++ ++++IE ++ G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] Length = 364 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 327 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 42/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKA-----CASALE--------------DAGFKVSQID-VDR 40 +AV+MGG + E +SL SGK C E D K +D D Sbjct: 4 IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + ++ D FN +HG GEDGL+QA ELL IPYT + ++ +K ++ Sbjct: 64 SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ + + I P +KP + GSSLGI + ++ DL Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEET----DLFN 179 Query: 157 S--SSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 + ++ ++++IE +++G E++ GV + L +TEI + ++DF+ +E KYS Sbjct: 180 AVKKAFKEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEI-ISQNDFFDFESKYSG-K 237 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S + PAK+ I ++Q +A + + GISRS+++ ++ + ++LEIN PG++ Sbjct: 238 SQEITPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSE 295 Query: 271 VSIFPEMAAYAG----YSFRELLLWMVEDAS 297 SIFP+ AG Y F+ + + +E A Sbjct: 296 ESIFPKQLKTAGISLSYFFKNCINYSIEKAK 326 >gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13] Length = 357 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 64/352 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39 +AV+ GG+SSE +VSL S + ++V I + + Sbjct: 6 VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65 Query: 40 RSVGLVLAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 R + A L PD + F VLHG GEDG +Q +++L IPY Sbjct: 66 RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQHL---ISPPYVIK 131 G+LASA MDK+ + V+ + ++ NR + + P +K Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGD---- 184 P GSS+GI +++ + L+ + +++H ++++IE+++ G EL V G Sbjct: 186 PANCGSSIGI-----NKATDAETLKDAVKIAFSHDNKVVIEEFIQGKELEVAVFGYDNPF 240 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AS V EI P +DFY YE KY S +PA+I D KE++ A A++A+GC+G+S Sbjct: 241 ASF-VGEIE-PCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLS 298 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF F V EIN PG TP+S++P++ G S+ L+ ++E A Sbjct: 299 RVDF-FLKQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349 >gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 145/297 (48%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GGISSERE+SL SGKA L+ ++V +D + D+A LHG Sbjct: 3 VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG+VQ+ILE I Y L S + MDK +K + + V Sbjct: 63 KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 LI P IKP GGSS+ IK + + + + ++ + +LIE+YV G+E Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAVREGLKYD--EIVLIEKYVKGVEY 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I ++F+ +E KYS+ N ++ ++ K+++ + + Sbjct: 181 TSFILNGQVFPTIRIT-SDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+G R D++ + V+ LE+N PGMT S+ P+ A G S++ LL ++E Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIE 295 >gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] Length = 366 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/343 (30%), Positives = 161/343 (46%), Gaps = 51/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E EVSL+S ++ AL+ F V I +DR Sbjct: 6 IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65 Query: 42 -------------VGLVLAH---LKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 GL+ + KP D+ F VLHG GEDG +Q + E +PY Sbjct: 66 YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP-------PYVIKPL 133 G+LASA MDK K + + +P P ++V NR+ + +I P +KP Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K L + + +L++E+ ++ E+ V+G+ + V Sbjct: 186 NMGSSVGIS--KATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASVPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP +FY Y+ KY++ +S ++PA I Q +A A +AI G+SR DFL D Sbjct: 244 EIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S +V+ EIN PG T +S++P++ G + ELL +V+ Sbjct: 304 KNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVD 346 >gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] Length = 364 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B] gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 341 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 170/340 (50%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG SSE ++SL+S + ++ + V I + + GL Sbjct: 5 IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKE-GLWYEYTGSIDKIEDGSW 63 Query: 45 -------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 VL + + D+ F +LHG GEDG +Q + +LL +P + +L+SAL M Sbjct: 64 INDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCM 123 Query: 92 DKMRSKQVVSSCGVPVCP-SILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGII 142 DK SK ++ + V P ++ R ++++ + +KP GGSS+G+ Sbjct: 124 DKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVS 183 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSD- 198 +K + S + + ++ + ++L+E+ + E+ ++ D + E+ S+ Sbjct: 184 KLKAEDSFEVAI--EKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNK 241 Query: 199 -FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY YE+KY+ + ++PAK+ ++ +++ LA A++ + CRG++R DF D + ++ Sbjct: 242 EFYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEI 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + EIN PG T S FP++ AG + EL+ ++++A Sbjct: 302 YLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNAE 341 >gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803] gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803] Length = 326 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 166/324 (51%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + + V+A Sbjct: 5 IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D FN +HG GE+GL+QA LEL+ IP T SAL+ +K V+ Sbjct: 65 TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + +N+ ++++ ++ P +K + GSS G+ +K + I Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEII--SAA 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+ +IE ++DG E++ GV+ +L VTEI +P +F+ YE KY S Sbjct: 183 KTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEI-IPDGEFFDYEAKYLG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + K+VQ +A + ++ + +G+SRS+F+F + ++E+N PG++ S Sbjct: 241 EITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFH--EGEPHFIEMNTNPGISQAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S ++L +E A Sbjct: 299 ILPQQAEKAGISLKDLFGSTIEAA 322 >gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 322 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 161/315 (51%), Gaps = 24/315 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 14 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117 GEDG ++ +L+L ++PY AS ++ DK +K V+ G+P + + +RF+ Sbjct: 74 GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V++ S+P ++ +++ L+E Sbjct: 134 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDAASLPAAMVGCFAYDS--TALVE 188 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +YV G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ Sbjct: 189 RYVPGMDVAVSVVDLGEGAQALPAVEI-VPRNGVYDYAARYTAGRTTWHAPARLDPEVAD 247 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V R+A AH A+G R ISR D + D + LE+NV PGMT S+ P AG F Sbjct: 248 AVARVAVAAHTALGLRDISRVDLIVD-ADGQPHVLEVNVSPGMTETSLLPLAVQAAGLDF 306 Query: 286 RELLLWMVEDASCLR 300 LL +V A+ R Sbjct: 307 GRLLGSLVSRAAARR 321 >gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426] gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426] Length = 367 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LE+L IPY +G+LASA+ MDK+ K + + G+ I Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFAQAGLRQAKYI 155 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V ++ + + P +KP GSS+GI K+ + +++ ++ Sbjct: 156 AVTKYDWQKRGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFQYDR 215 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IE+ + G E+ GV+G+ V VPK +FY YE KY + ++PA + Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y+ ++++A A Q + G++R DF F V+ E+N PG TP S+FP + + Sbjct: 274 KEQYETIKQMAITAFQVLDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332 Query: 281 AGYSFRELL 289 +G + EL+ Sbjct: 333 SGVPYPELI 341 >gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 365 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 57/341 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------VGL-- 44 + VL GG S E EVSL S + +AL+ F+V I + ++ G+ Sbjct: 6 VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65 Query: 45 ---------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 VL L P DL F VLHG FGEDG VQ L+L IPY S Sbjct: 66 QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIK 131 G+L S+L+MDK+ K+++ G+ V R F+++ Q +S P +K Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQ--LSYPIFVK 183 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+GI +K + + + + ++ + L E+++ G E+ ++G+ + + Sbjct: 184 PANLGSSVGISKVKNREELIQGIDLAVKYDM--KCLAEEFIPGKEIELSILGNDNPKTSV 241 Query: 191 --EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI +P ++FY Y KY + S V+PA + + +++ + A + + C G+SR D+ Sbjct: 242 PGEI-IPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDY 300 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ EIN PG T +S++P++ +G S+ +LL Sbjct: 301 FVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLL 341 >gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 370 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 163/349 (46%), Gaps = 62/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51 +A+ GG+SSE EVS S A AL +A ++V + + ++ + H P Sbjct: 9 VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ V+HG GEDG +Q + E+ Sbjct: 69 GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126 IPY G+LASA+ MDK + V+ + GVP C R ++ ++ + Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184 P +KP GSS+GI K LD + D++++E+++DG E+ C +G+ Sbjct: 189 PIFVKPANAGSSVGIS--KAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246 Query: 185 --ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 A++ T + ++FY+Y+ KY + S V+PA + + EV+ A A+ A+GC Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G+SR DF + + +V E+N PG T +S++P++ + G +F +L+ Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLV 355 >gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343] gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC 9343] Length = 324 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + S+ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + +++ ++++IE ++ G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] Length = 326 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + ++ VDR Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+++ + D I P IKP GGSS G+ +K ++ I + Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E ++DG E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 AKAFEEAQEVVVEAFMDGTEITCGCYKTKDKAVVFPITEV-VTHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQALTSAIYDILGASGIIRVDYII-TAGDKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 354 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 17/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F VLHG GEDG +Q + EL IPY ++SA+ MDK + V+ + G+P P + Sbjct: 98 DCIFPVLHGKNGEDGTIQGLFELSGIPYVGCDHMSSAICMDKEMAHIVMENAGIPCAPYL 157 Query: 112 LVNRFT-MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V +D +H+ P IKP GSS GI I + + + Sbjct: 158 CVYEDEHLDYRHIYEEAKAKLGLPIFIKPANAGSSFGIHKIASFDDFEESMKDAFYHDGR 217 Query: 164 DQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 ++++E ++G E+ C VMG+ S+D E A P F+ YE KY ++S PA+ Sbjct: 218 GKVILETTIEGFEIGCAVMGNKELFAGSVDEIETAAP---FFDYEGKYQMVDSHIYCPAR 274 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I ++++E + LA A++A+ C+G++R D P + + E+N PG T S +P M Sbjct: 275 ISKELFEEARSLALKAYRAMNCKGMTRVDMFVTP-QQSIVMNEVNTIPGFTDTSRYPTMM 333 Query: 279 AYAGYSFRELL 289 AG F +LL Sbjct: 334 KEAGIEFGDLL 344 >gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] Length = 361 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/337 (27%), Positives = 168/337 (49%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + + + +LIE++++ E+ C V+G+ + + EI V Sbjct: 185 IGINVAYSESQI--EFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA++ + ++ AFL ++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 S K++ EIN PG T +S+F +M ++ G F++LL Sbjct: 303 KSGKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLL 339 >gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium CY_gF1DD01_14] gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNNNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12] gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] Length = 324 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 162/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + S+ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + T+ + +I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++IE ++ G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 183 AKAFGEAEEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMDIKDVMTDIIEN 322 >gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227] gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227] gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLRLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 368 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F VLHG +GEDG +Q +LE+ IPY + + ASA +MDK +K++ ++ G+P+ P + Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYA 166 Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 +L + T+ D Q L P +V KP + GSS G V K L+ + + ++L Sbjct: 167 VLRSGMTLSEEDKQRLGLPVFV-KPSRAGSSFG--VSKVSDWADLEAAIAIAREIDSKVL 223 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNST--HVLPAK 218 +E + G E+ CGV+ + E +V DFY +E KY S + +PA Sbjct: 224 VEGAIIGREIECGVLEGEAGGTPEASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPAD 283 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P + ++V+ A A A+ C G++R+DF P ++ EIN PG TP S+FP M Sbjct: 284 LPERVARQVRDYAVRAFTALDCAGLARADFFVTP-ELDIYLNEINTMPGFTPTSMFPRMW 342 Query: 279 AYAGYSFRELLLWMVEDA 296 A +G + +L+ ++ A Sbjct: 343 AASGLEYPKLVDRLIRTA 360 >gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] Length = 361 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/340 (26%), Positives = 169/340 (49%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ SG +A++ + V I + + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 46 ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LA+L + D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV + + RF + ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI +K + L + ++ + D++L+E+ + G E+ V+G+ + V+ +I Sbjct: 187 VGITHVKSESDYLPALAE--AFKYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY ++T + +PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +V + E+N PG T +S++P++ AG + +L+ ++E Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIE 344 >gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R] Length = 324 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + S+ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + +++ ++++IE ++ G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W] gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B] gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] Length = 324 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40 +A++ GG +SE +VSL S + S ++ + + ++ +DR Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 +++ ++LIE Y++G E+TCG +TE+ V +++F+ Y+ KY+ + Sbjct: 185 --AFDEAQEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEV-VTENEFFDYDAKYNG-QVS 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ D+ +Q L + +G GI R D++ KV LE+N PGMT S Sbjct: 241 EITPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYII-TAGDKVNLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---TNRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046] gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046] Length = 364 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus gasseri ATCC 33323] gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323] Length = 375 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 19/261 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162 Query: 112 LVNRFTMD--SQHLISPPYV---------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF + + + YV +KP GSS+G+ + ++ + L + ++ Sbjct: 163 AVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVL-- 215 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY NST L Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDD-NSTSTLEI 279 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PAK+P I ++V++ A QA C G++R D + ++V E+N PG T +S++P Sbjct: 280 PAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYP 339 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ G + +L+ +++ A Sbjct: 340 KLFEEVGIPYTDLITKLIDYA 360 >gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] Length = 364 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVEAKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] Length = 326 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VLMGG SSE ++SL SG A L+ F V I + D Sbjct: 4 IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H+ D +N +HG GEDG +QA LELL IP T SA++ +K V+ Sbjct: 64 SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ I +N+ D + PY +K + GSS G+ + K + + L Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKALEL 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNST 212 + S + D++++E ++DG E++ G+ +G+ +L TEI V +DF+ YE KY S Sbjct: 184 AFSVD--DEVILESFLDGTEVSVGIYQLGEEIIALPPTEI-VSDNDFFDYEAKYQG-KSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I +++ VQ + + + C+GI+R+DF+F + ++EIN PGM+ S Sbjct: 240 EITPARISVELTLAVQEQSKRIYSVLKCKGIARADFIFHDGTPH--FIEINTNPGMSTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ + +++ ++E+ Sbjct: 298 IIPQQIRATDKTLQQVFTEVIENT 321 >gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94] gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94] gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] Length = 364 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] Length = 322 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 139/248 (56%), Gaps = 8/248 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q LE+L PY +G+ ASAL MDK SK++++ G+PV P + Sbjct: 78 DVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKRILAQAGIPVVPWV 137 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P+ +KP GSS+GI + + L+ + ++ H + ++EQ Sbjct: 138 ALYQGERPFIPFDP-PFFVKPANTGSSIGIRRV--EHYAELEEALAEAFRHDQKAVVEQA 194 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G+ EL G++G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 195 LSGVRELEVGILGNIFGEASPVGEVRYQAAFYDYETKYTPGRAELLIPAPLDPGTQETVQ 254 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ +G RG++R+DF +V+ EIN PG TP S++P + A G + EL Sbjct: 255 ELALKAYRLLGIRGMARADFFLA--EGEVYLNEINTIPGFTPTSMYPRLFAAGGLPYPEL 312 Query: 289 LLWMVEDA 296 L +VE A Sbjct: 313 LRRLVELA 320 >gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 368 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 174/340 (51%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-------------VSQIDV-------DR 40 + ++ GG S E E+SL S A ++ F+ + ID D Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 41 SVGLVLAH---------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + ++L + LK D+ F V+HG GEDG +Q +L ++ +P+ S +L Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIKPLKGGSSL 139 +S++ MDK SK ++ G+ V P V ++ +D + +S P +KP GSS+ Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 G+ + K + L L+++ S++ +++LIE + G EL C V+G+ + ++ E+ + Sbjct: 186 GVSKVTKCKDFNLALIKAFSFS--NKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++FY+Y KY + ++PA I I +++ +A A Q + C G++R D +F L K Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVD-VFLNLDNK 302 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E+N PG T S++P++ +G + +EL+ +VE A Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653] gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653] Length = 390 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL +PY +G+LASA+ MDK K+V S G+PV P Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184 Query: 112 LVN-----RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R ++ I+ P +KP + GSS+GI K D LD + Sbjct: 185 VLRPRDWERDPAAARARITDFAAEHGWPVFVKPSRAGSSIGI--TKVDGPEQLDEAIEEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++++E + G E+ CGV+ AS+ V DFY +E KY + V Sbjct: 243 RRHDPKVIVEALLRGREIECGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYID-AAPGV 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA + + + VQ LA A A+ C G+ R+D FL D S + EIN PG TP+S+ Sbjct: 302 VPAPLTAEETERVQELAVRAFDAVSCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M +G S+ EL+ +++ A Sbjct: 360 YPRMWQESGVSYPELVDRLIQAA 382 >gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a] gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a] Length = 364 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46] gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46] Length = 324 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG +SE VSL S + S ++ + + S+ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + +++ ++++IE ++ G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] Length = 328 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 161/327 (49%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A+L GG S E EVS+ S + A+ L +KV ID+D+ Sbjct: 4 IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ L +K D AF +HG GEDG +Q ++L IPY SA++M+K +K +V Sbjct: 64 SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123 Query: 101 SSC-GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + G+ S+ + F D + S P IKP GGSS+G+ + ++P Sbjct: 124 NGIEGLHTAKSMQL--FQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQA 181 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSL 209 L ++ +H Q+L+E+++ G E + G++ G+ L TEI + +F+ YE KY+ Sbjct: 182 LEKAFHEDH--QILVEEFIKGREFSIGIVRLHGELKVLPATEI-ISSKEFFDYEAKYTDG 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + PA + + K + R+ + + C G++R DF+ S+ +++EIN PG T Sbjct: 239 VTQEITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQT 298 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S+ P+ AG ++ ++E A Sbjct: 299 VNSLIPQQVRAAGMDIKDFYSALIEGA 325 >gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1] Length = 364 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] Length = 385 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + + P +KP + GSS+GI K D LD + + Sbjct: 180 VIRPREWEQNESAARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSGLDEAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 +H ++L+E + G E+ CGV+ G + EI P+ +Y +E KY ++ST Sbjct: 238 QSHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EVQ+LA A A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTPEETAEVQKLAVDAFDAASCEGLVRADFFLTEDGEFVI-NEINTLPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G ++ EL+ ++E A Sbjct: 355 YPQMWEKSGIAYPELVDRLIEAA 377 >gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] Length = 324 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + +++ VDR Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q ++L IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 ++ +++++E +++G ELTCG V TE+ V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEV-VTHNEFFDYDAKYNG-QVD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ VQ+L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] Length = 342 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 24/252 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q +LE+ ++PY ++AS +MDK+ +K++ +P PS+ Sbjct: 77 DVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKLFDQAHIPQVPSL 136 Query: 112 LVNRFTMDS-------------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 V + D HL P +V K + GSS+G + + Sbjct: 137 YVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFV-KASRSGSSVGCYKVNSLTELLP 195 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLN 210 L ++++++ +++E+ ++ EL C V+G+ + + + +P +FY+YE KY Sbjct: 196 RLHEAATYDR--HVVVEKAINATELECAVIGNDDISASRVGQILPHGEFYTYESKYEDEQ 253 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S +PA++ I +++ A A +A+ G++R DF +D + V+ EIN PG T Sbjct: 254 SATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYLNEINTMPGFTN 313 Query: 271 VSIFPEMAAYAG 282 +S++P++ AG Sbjct: 314 ISMYPQLMKDAG 325 >gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026] gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412] gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026] gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412] gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] Length = 364 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC 13129] gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae] Length = 365 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 33/298 (11%) Query: 12 REVSLSSGKACASAL--EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 REVSLS A L ED + K D+ F VLHG FGEDG +Q Sbjct: 85 REVSLSVNPTTAGELCFEDGSL----------------YAKVDVVFPVLHGRFGEDGTIQ 128 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP 126 + EL +PY +G+L+SA MDK +K+++++ G+PV +++ T + + + Sbjct: 129 GLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGL 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--D 184 P +KP +GGSS+GI + D S D S + H ++++E + G+E+ CGV+ D Sbjct: 189 PVFVKPARGGSSIGISRV-ADWS-EWDAALSLAREHDSKVIVEAEIVGVEVECGVLERID 246 Query: 185 ASL------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 SL + + FY ++ KY T +PA + +Q L+ A A+ Sbjct: 247 GSLMASVPAQLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTAL 306 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG++R DF EIN PG TP+S++P++ G + +LL ++E A Sbjct: 307 SCRGLARVDFFV--TDHGPVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362 >gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthase A gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/349 (30%), Positives = 163/349 (46%), Gaps = 59/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------VGLVLAH------ 48 VL GG S E EVSL S + L+ F+V + +D++ L AH Sbjct: 9 VLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAALPI 68 Query: 49 ------------------LKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 L P D+ F V+HG EDG VQ +LEL ++ Y Sbjct: 69 LPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADVAY 128 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMD-------SQHLISPPYVI 130 SG+LASA+SMDK +K++ G+PV P ++ R F D + +S P + Sbjct: 129 VGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186 KP GSS+GI +K ++ L ++ + ++L++Q +D E+ V+ D AS Sbjct: 189 KPCNMGSSVGIHKVKTQDALEAAL--DDAFRYDVKVLVQQGIDAREIEVAVLEDETLFAS 246 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L +FYSYE KY + V LPA++ + V+ LA A+ C G +R Sbjct: 247 LASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGFAR 306 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF D + + + EIN PG T +S++P+M +G + ELL +V+ Sbjct: 307 VDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVD 355 >gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] Length = 338 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/331 (28%), Positives = 161/331 (48%), Gaps = 47/331 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S+E EVSL S A + L+ +++ I + R + Sbjct: 4 IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63 Query: 49 ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 +K D F VLHG GEDG +Q ++EL +P Sbjct: 64 EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G L+S+L MDK ++ ++V G+ V P +V R + L+ P +V KP++ GSS G Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAV-PKAVVLRKGEKADTLVYPVFV-KPVRAGSSFG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + +++ L+ ++ H D+++IE+ ++G E+ C V+G+ L V + + SD Sbjct: 182 ITKVDREED--LEKAVELAFVHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ ++ KY+ NS +PA+I +I ++++ A ++ + C+G +R D P R VF Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTPDKRIVF 299 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M F ++L Sbjct: 300 -NEVNTIPGFTSHSRYPNMMKGIDMLFEDVL 329 >gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073] gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89] gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536] gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1] gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88] gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073] gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89] gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536] gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1] gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88] gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82] gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034] gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972] gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146] gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG 857C] gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1] gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327] gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1] gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263] gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2] gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1] gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86] gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] Length = 364 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] Length = 361 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 19/261 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 89 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148 Query: 112 LVNRFTMD--SQHLISPPYV---------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF + + + YV +KP GSS+G+ + ++ + L + ++ Sbjct: 149 AVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVL-- 215 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY NST L Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDD-NSTSTLEI 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PAK+P I ++V++ A QA C G++R D + ++V E+N PG T +S++P Sbjct: 266 PAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYP 325 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ G + +L+ +++ A Sbjct: 326 KLFEEVGIPYTDLITKLIDYA 346 >gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831] gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831] Length = 366 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + IP+ S +L SA+SMDK +K+++ G+ V Sbjct: 99 DVIFPIVHGTLGEDGSLQGMLRMANIPFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGY 158 Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +S H + P IKP GSS+G+ ++ ++ + + ++H + Sbjct: 159 AYRSVDKESIHFDSLKEELGLPMFIKPANQGSSVGVHKVENEEQFYSAIKDAFQFDH--K 216 Query: 166 LLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLD 222 LL+E+ + G E+ C V+G+ + V +P DFYSYE KY + +PAK+ Sbjct: 217 LLVEEAIVGREIECAVLGNEKPAASVPGEILPTGDFYSYEAKYIDETGAVLQIPAKLEEP 276 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +Q +A A +A+ C G++R D FL D ++ EIN PG T +S++P++ + Sbjct: 277 VVDSIQDIALQAFKALNCEGLARVDVFLTD--DNEIVINEINTLPGFTKISMYPKLWEES 334 Query: 282 GYSFRELLLWMVE 294 G S+REL+ ++E Sbjct: 335 GVSYRELIENLIE 347 >gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933] gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai] gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301] gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T] gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A] gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS] gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739] gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5] gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11] gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str. E2348/69] gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1] gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989] gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39] gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606] gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. TW14359] gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B] gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50] gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736] gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933] gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai] gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301] gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T] gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr. W3110] gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS] gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A] gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5] gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11] gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str. E2348/69] gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989] gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1] gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39] gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. TW14359] gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017] gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042] gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407] gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)] gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1] gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1] gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431] gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905] gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101] gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. 493-89] gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H 2687] gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA 5905] gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. LSU-61] gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14] gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010] gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G] gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180] gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357] gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520] gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489] gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007] gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044] gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88] gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71] gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70] gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671] gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71] gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218] gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272] gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227] gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304] Length = 364 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 370 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ S + Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDSPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 310 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354 >gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680] gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 385 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 141/263 (53%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R +D P +KP + GSS+GI K D LD + + Sbjct: 180 VIRPREWERDESAARRKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAVAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++++E + G E+ CGV+ G + EI +S +Y +E KY ++ST Sbjct: 238 QRHDPKIIVEALLRGREIECGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EV+RLA A +A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTPEETAEVRRLAVEAFEATSCEGLVRADFFLTEDGDFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G ++ EL+ +VE A Sbjct: 355 YPQMWQASGIAYPELVDRLVEAA 377 >gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] Length = 352 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 163/344 (47%), Gaps = 52/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39 + V+ GG SSE EVS S + A A++ + ++ I + D Sbjct: 6 LVVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYD 65 Query: 40 RSVGLVLA---------------HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V V++ + +P D+ F VLHG +GEDG +Q + E+ +IPY G Sbjct: 66 SQVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCG 125 Query: 84 ILASALSMDKMRSK------QVVSSCGVPVCPSILVN-RFTMDS-QHLISPPYVIKPLKG 135 + ASA +MDK +K V + VPV + MD + ++ P +KP Sbjct: 126 VFASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSA 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191 GSS G V K L+ + NH ++L+E+ + G EL CGV+G + V E Sbjct: 186 GSSKG--VTKAHDRAELEAGLHEALNHDSKILVEETIIGRELECGVLGYGNHTKASGVGE 243 Query: 192 I-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I A +DFY ++ KY++ +S ++ A IP + E++ A AI G++R DF Sbjct: 244 ILAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +V + E+N PG T +S++P + GY + L+ ++E Sbjct: 304 EKDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIE 347 >gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] Length = 363 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 16/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ++ EL+ IPY G+ +SA+ MDK+ SK+++ G+P+ Sbjct: 96 DVVFPVLHGPRGEDGTVQSLFELMNIPYVSCGVTSSAICMDKVFSKKILEQSGLPIVDYK 155 Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + + + + + P +KP GSS+GI K L+ + + Sbjct: 156 AFYKRELLARMPEIISEVEEFLGYPCFVKPANLGSSVGI--SKAGGPSELESAMRLATQY 213 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKY-SSLNSTHVLPAK 218 ++L+E+++D E+ C V+G+ + + EI +P DFY Y KY S +LPA Sbjct: 214 DTKILVERFIDAREIECAVLGNDEPNASLPGEI-IPSRDFYDYTAKYLDGDKSKLLLPAP 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + +Q LA A + + C G++R DFL +S ++ E+N PG T +S++P+M Sbjct: 273 VSRKDITRIQELAIKAFKTLDCSGMARVDFLMSKVSGNIYINELNTIPGFTRISMYPKMW 332 Query: 279 AYAGYSFRELL 289 +G S+++L+ Sbjct: 333 EISGLSYKDLI 343 >gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10] Length = 360 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 + ++ GG SSE EVS+ SG+ A++ F V I + D S Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 44 LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + H + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FYSY+ KY NST L PA +P +I ++R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDD-NSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115] gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115] Length = 339 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVG----- 43 +L GG S E EVSL S ++ +AL F V+ + + + G Sbjct: 7 LLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAPGG 66 Query: 44 --LVLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 LVL + D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ +K Sbjct: 67 GDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147 QV++S G+ L R SQ + P +KP GSS+GI + D Sbjct: 127 QVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHTDD 186 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGD---ASLDVTEIAVPKSDFYSY 202 LDL +++ ++++E E+ G++G+ + V E++ S+FY Y Sbjct: 187 LQAALDL----AFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSF-DSEFYDY 241 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY+ + +PA++P D+ + V+ +A A +A+ C G++R DF + + ++F E+ Sbjct: 242 ETKYTEGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEV 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PG T S++P++ AG + EL+ +V Sbjct: 302 NTMPGFTTTSMYPKLFEAAGIGYSELVTRLV 332 >gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 362 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 17/299 (5%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 I R ++SGKA A D + ++ R G VL+ + D+ F VLHG FGEDG Sbjct: 63 IQDRRTPEITSGKAVALP-GDPTRDLMYLEPGRG-GEVLSSV--DVVFPVLHGAFGEDGT 118 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH--L 123 +Q +LE+ +PY G+L+SA++MDK +K+++++ G+ V ++ R T+D Q Sbjct: 119 IQGLLEMAGVPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRER 178 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP + GSSLGI K LD + + +++IE V G E+ CGV+ Sbjct: 179 LGLPVFVKPARAGSSLGI--TKVTDHADLDDAIAEARRTDPKVIIESAVTGREVECGVLE 236 Query: 184 ------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 +ASL S +Y YE KY + +PAKI D + ++ A A +A Sbjct: 237 FPDGRVEASLPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRA 296 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G++R DF F ++ E+N PG T +S++P M A G + LL ++E A Sbjct: 297 LECQGLARVDF-FVADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETA 354 >gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C] gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C] Length = 385 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 21/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL IPY G+L+SA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYV 179 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + ++ + P +KP + GSS+GI K D + LD + Sbjct: 180 TIRPREWEADQAAATAKVLDFAGEHGWPLFVKPARAGSSIGI--TKVDDASGLDAAIREA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214 H ++++E + G E+ CGV+ G + EI V DFY +E KY ++T + Sbjct: 238 RRHDPKVIVEALLRGREIECGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKYID-SATGL 296 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + + EVQ+LA A +A C G+ R+DF V EIN PG TP+S++ Sbjct: 297 VPAPLTPEQTAEVQKLAIDAFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMY 355 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M +G + EL+ +++ A Sbjct: 356 PRMWQESGIEYPELVDRLIQAA 377 >gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] Length = 326 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 VL K D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E ++DG E+TCG D S +TE+ V ++++ YE KY+ S Sbjct: 183 AKAFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYNGA-SD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] Length = 360 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338 >gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 298 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 12/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSE+EVSL SG+ + ++ I + + D AF LHG Sbjct: 3 VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QA+LE L+IPY+ +L SAL M+K +K++++S + IL+ + Sbjct: 63 RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGI 175 + S P ++KP GGSS+G ++ DLL + ++ + ++LLIE+Y+ G Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKT----DLLSAIDEAFKYDEELLIEEYIAGE 178 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+T V+ I F+ Y KY ++N A +P + +V ++A Sbjct: 179 EITSFVLDGEVFPTVCIKPRFGQFFDYNSKY-TINGALEEIALLPSILQDKVTQIAEKIW 237 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 C+ R DF+ + ++ LEIN PG+T S+ P+ A G F L+ Sbjct: 238 ALFNCKSYCRIDFIIK--NETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLI 289 >gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Corynebacterium glutamicum ATCC 13032] gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC 13032] Length = 360 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 170/353 (48%), Gaps = 65/353 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQID------VDRS 41 +AV+ GG SSE VS S A + L+ D + V + D +DR+ Sbjct: 11 VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70 Query: 42 VGLVLAH--LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 + V H ++P D+ F VLHG FGEDG VQ + L +IP Sbjct: 71 MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135 G+LASA MDK +K+++++ G+PV +++ T ++L+ P +KP +G Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190 Query: 136 GSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---------- 183 GSS+GI + +D + + L ++ H +++++E + G E+ CGV+ Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA----HDEKVIVESEIVGSEVECGVLQYPDGRIVASV 246 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A L TE FY ++ KY T +PA + + +Q LA + QA+ C G+ Sbjct: 247 PALLSGTESGA--GGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF + EIN PG TP+S++P+M +G ++ ELL +V+ A Sbjct: 305 ARVDFFV--TANGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355 >gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora] Length = 334 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 162/335 (48%), Gaps = 63/335 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV++GG S E +VS+S+G A + ++ + + + +I + R HL Sbjct: 11 IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 K DLA+ +HGN GE+G++Q ++L +PYT G AS+L Sbjct: 71 NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKK 146 + + F+ D+ L+ P +KP GGSS+ +K Sbjct: 131 TANN--------------------GTFSFDADALLREFELPVFVKPASGGSSVATTKVKS 170 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSD--F 199 + + + + + Q+L+E+++ G E CGV+ DA+ +TE+ +P D + Sbjct: 171 REQVVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEV-IPHGDSEY 229 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + Y KY+ +S+ V PA++ ++ ++ ++ + + CRG+ R D+ +D +++++ Sbjct: 230 FDYNAKYNG-SSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYF 288 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 LE+N PG TP S+ P+ A AG S EL ++E Sbjct: 289 LEVNTIPGQTPESMVPQQARAAGISIAELYHMVIE 323 >gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] Length = 365 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 158/345 (45%), Gaps = 55/345 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-------------------- 42 VL GG+SSE EVS S L+ A ++V + + R Sbjct: 12 VLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWEEL 71 Query: 43 ---------------GLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 G++L L D+ LHG +GEDG VQ +LEL IPY Sbjct: 72 PGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIPYV 131 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIK 131 G+LASA+ MDK + + + G+P + R+ ++S + P +K Sbjct: 132 GCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + + +H +++ E +VDG E+ C V+G T Sbjct: 192 PANAGSSVGITKAHDRDELKQAIALALENDH--KVVFEAFVDGHEVECAVIGSDPAVATR 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + ++FY+Y+ KY + S V+PA++ + EV+ A +A+ A+ C G++R DF Sbjct: 250 PGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCDFF 309 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +V EIN PG TP+S++P++ + G L+ ++E Sbjct: 310 VEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIE 354 >gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] Length = 364 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 171/349 (48%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 365 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 21/275 (7%) Query: 35 QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 ++D DR+ G V + + D+ F VLHG FGEDG +Q + E+ +PY SG+LASA MDK Sbjct: 91 RLDRDRA-GEVFSGV--DVVFPVLHGPFGEDGTIQGLFEMAGLPYVGSGVLASAAGMDKE 147 Query: 95 RSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKGGSSLGII-VIKKDQ 148 +K+++++ G+ V S++V R T Q + P +KP + GSS+GI V D+ Sbjct: 148 FTKKLLAAEGLAVG-SLVVLRPGTQSLTAAQQERLGLPVFVKPARAGSSVGITRVTSWDR 206 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT-----EIAVPKSDFYS 201 LD +++ H ++L+E + G E+ CGV+ D ++ + + ++FY Sbjct: 207 ---LDEAVAAARVHDPKVLVEAAIVGREVECGVLEYPDGTVRASLPAEIRLVSGSAEFYD 263 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ KY +PAK+ D+ + V+ A A +A+ C+G++R DF V E Sbjct: 264 FDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGLARVDFFVGDDGAPVVN-E 322 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG TP+S++P M A G + LL +V+ A Sbjct: 323 VNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTA 357 >gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella anatipestifer RA-GD] Length = 327 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 167/325 (51%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG S E +VSL SG+ +L+ + V ++ V D Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 41 SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV L L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + D +I+ P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++L+E ++DG+E++ GV+ G+ L +TEI +P+++F+ YE KY S Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-S 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++PA++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P Sbjct: 242 QEIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPA 299 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A G S +L VE A Sbjct: 300 SILPQQARIYGISITDLCGNEVEKA 324 >gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 367 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 163/297 (54%), Gaps = 23/297 (7%) Query: 16 LSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 +S+G A A ++ + ID VDRS A + ++ F VLHG +GEDG +Q +LE Sbjct: 70 VSTGSAVALPVDPTAAALVSIDPSVDRS-----AVVDVEVVFPVLHGPYGEDGTIQGLLE 124 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129 L +PY +G+LASA +MDK +K+++++ G+PV +++ T + + + P Sbjct: 125 LAGVPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVF 184 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187 +KP + GSSLG+ + + LD + + ++L+E V G E+ CGV+ D + Sbjct: 185 VKPARAGSSLGVSRVA--EWAELDRAIAIARETDPKVLVEAAVVGREVECGVLEHPDGRI 242 Query: 188 DVT---EIAVPKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + EI V +FY ++ KY ++ +PA +P ++ + L+ A A+ +G Sbjct: 243 EASPPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQG 302 Query: 243 ISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF P L+ +V E+N PG TP+S++P M A AG S+R+L+ ++ A Sbjct: 303 LARVDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTA 359 >gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] Length = 317 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 159/320 (49%), Gaps = 34/320 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE ++SL SG L+ + +I + D S+ + Sbjct: 1 MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q EL+ IP T + +AL+ +K + G Sbjct: 61 NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N ++ I P +K K GSS GI + K + + + ++S+ Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAI--NNSF 178 Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++IEQ++DG+E++ GV+ G+ L +TEI V ++DF+ Y KY S + P Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEI-VSENDFFDYAAKYEG-KSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I D ++ +A ++ +G G SRS+F+F + + + LE+N PG+T SI P+ Sbjct: 237 ARISKDYEQKTVTVAKQVYEILGMTGFSRSEFIFK--NDEPYLLEMNTVPGLTKESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVEDA 296 AA AG + +L +E+A Sbjct: 295 QAAEAGINMSDLFDNAIEEA 314 >gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002] gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 353 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 20/261 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F ++HG GEDG +Q +L L+E P+ S +L SA MDK+ K V + G+ + Sbjct: 90 DAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGSAAGMDKLAMKMVFAQAGLAQVDYV 149 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V R + S + P P +KP GSS+GI ++ + L ++ Sbjct: 150 GVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANLGSSVGISKVRTRDELEKALDLAAE 209 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ +L++E V E+ C V+G+ AS+ V EI SDFY YE KY+ S+ + Sbjct: 210 YDR--RLIVEAGVTAREVECAVLGNDQPKASV-VGEIRF-DSDFYDYETKYTDGKSSMHI 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP I +++Q LA A QA+ CRGI+R DF + ++ V EIN PG T +S++P Sbjct: 266 PAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEATQTVLINEINTLPGFTALSMYP 325 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ +G F +L+ +V+ A Sbjct: 326 QLWQQSGVPFPQLVDRLVQFA 346 >gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans NG80-2] gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2] gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] Length = 364 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 54/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLV------ 45 + VL GG S E +VSLS+ +A +A++ F V I + R G V Sbjct: 5 VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64 Query: 46 -----LAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + P D+ F +LHG GEDG VQ +LE+L +PY Sbjct: 65 QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDV 189 P GSS+GI K+ + ++ ++ +++IE+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGISKCKQRDDLKTAFAEAFKYDR--KIIIEESIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++ +A A +A+ G++R DF Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDF- 301 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F V+ E+N PG TP S+FP + ++G + EL+ Sbjct: 302 FLAEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELI 341 >gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] Length = 385 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 137/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYL 179 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R +D P +KP + GSS+GI K D LD + + Sbjct: 180 VIRPREWERDESAARRKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSALDEAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H + L+E + G E+ CGV+ G + EI P + +Y +E KY ++ST Sbjct: 238 RRHDPKFLVEAALRGREIECGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EV+RLA A A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTDEETAEVRRLAVEAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M G S+ EL+ +V A Sbjct: 355 YPQMWQATGVSYPELVDLLVRAA 377 >gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] Length = 349 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 133/254 (52%), Gaps = 16/254 (6%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 VLHG GEDG +Q +L L+++P+ SG+L SA+ MDK+ K + G+P V R Sbjct: 95 VLHGPNGEDGTIQGLLRLMQVPFVGSGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERS 154 Query: 117 TMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + S I P P +KP GSS+GI ++ + L ++S++ Sbjct: 155 QVWSNPCIFPKLCDEIEADLGYPCFVKPANLGSSVGIAKVRSHSELETALDSAASYDR-- 212 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +++IE V+ EL C V+G+ + + + + DFY YE KY+ S +PA +P Sbjct: 213 RIVIEAGVNARELECAVLGNDNPKASVVGEVTFEGDFYDYETKYTEGRSQIHIPANLPDK 272 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 I ++Q +A A + + G++R DF + + +++ EIN PG T S++P++ G Sbjct: 273 IVTQIQEMAIQAFKTVDAAGLARVDFFYVEETEEIYLNEINTLPGFTKFSMYPQLWKATG 332 Query: 283 YSFRELLLWMVEDA 296 +F +L+ +V+ A Sbjct: 333 INFEQLVDQLVQFA 346 >gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] Length = 320 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 152/300 (50%), Gaps = 23/300 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----SQIDVDRSVGLVLAHLKPDLAF 55 + VL GG S+E E+SL SG+ A AL G +V S +D+DR D+ F Sbjct: 14 IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDR-----FDWTGCDVVF 68 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 LHG +GEDG +Q+ L+ L IPY+ S L+ K SK+ V PS ++ Sbjct: 69 LALHGTYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNT-PSYVLIH 127 Query: 116 FTMDS----QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LI 168 + D+ QH S P V+KP GSSLG+ ++K + +P L + H D ++ Sbjct: 128 ESDDAGRIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCF---HYDSFGIL 184 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E + G E T V+ D L + +I P +F+ YE KY+ ++ ++ +P ++ + + Sbjct: 185 ESAIKGTEWTVTVVDDQVLPLIQIQTPH-EFFDYEAKYTEDSTQYLFEFDLPTNVIQAII 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + A A+G GI R D L D ++ + LE+N PG T S+ P+ AA AG F EL Sbjct: 244 KTGVNACTALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGEL 302 >gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 392 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 157/329 (47%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44 +A++ GG SSE EVSL S + S + + V +D++R Sbjct: 67 IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126 Query: 45 VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 H D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186 Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 GV V SILV R F +D + + + P +KP GSS G+ +K DQ P Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAP-- 244 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209 + D +IE ++DG E++ G V G+ L TE+ V ++F+ Y+ KY+ Sbjct: 245 -ALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYNG- 301 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQP 266 + PA+I + + V ++ + C GI R D++ + K+ +E+N P Sbjct: 302 QVEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTP 361 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMTP S P+ AG +++L +VE+ Sbjct: 362 GMTPTSFIPQQVRAAGMEMKDVLSEIVEN 390 >gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 369 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 140/258 (54%), Gaps = 12/258 (4%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 LA + D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK +K+V+ + Sbjct: 96 LALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARL 155 Query: 106 PVCPSILVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V P + +R T D LI+ P +KP GSS+G+ ++ + L + + Sbjct: 156 AVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA 215 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLP 216 ++H ++L+E V G E+ C V+G+A V V FYSY KY S + V+P Sbjct: 216 YDH--KVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIP 273 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A I + +Q++A A+QA+GC G++R D R V E+N PG T +S++P+ Sbjct: 274 ADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPK 332 Query: 277 MAAYAGYSFRELLLWMVE 294 + +G +R L+ ++E Sbjct: 333 LWQASGLDYRGLITRLIE 350 >gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 153/335 (45%), Gaps = 53/335 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG S ER+VSL+SG + A AL + G +V +D ++ L P Sbjct: 5 ILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEVGK 64 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 DL F LHG +GEDG VQ LE + +T Sbjct: 65 EPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVRFT 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKG 135 +G A A + +K R++ V+++ GVPV L + + P P V KP+ Sbjct: 125 GAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPVAD 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS + V + D L+ L G LL+E ++ G E T GV+G L V EI + Sbjct: 185 GSS--VSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLPVIEIEL- 241 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI--GCRGISRSDFLFDPL 253 + + Y KY + V PA+IP + +Q+LA AH+A+ G SR+DF D Sbjct: 242 STPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCDAA 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + LE+N PG+T S+ P A+ AG+++ +L Sbjct: 302 GEPMC-LEVNALPGLTATSLLPLGASGAGWTYADL 335 >gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 375 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 141/260 (54%), Gaps = 17/260 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162 Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF +D +++ S +KP GSS+G+ + ++ + L + ++ Sbjct: 163 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY ST +P Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 280 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P I ++V++ A QA C G++R D + +++V E+N PG T +S++P+ Sbjct: 281 AKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEAKEVVLTEVNALPGFTNISMYPK 340 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G + +L+ +++ A Sbjct: 341 LFEEVGIPYTDLITKLIDYA 360 >gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG] gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF] Length = 389 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ DK K++ +S G+ V P + Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R D P +KP +GGSS+GI K D LD + + Sbjct: 185 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + LIE V G E+ CGV+ AS+ V +Y +E KY +++ + Sbjct: 243 RRHDPKFLIESLVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273 +PA + + EVQRLA A +A C G+ R+DF L+ F + EIN PG TP+S+ Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 358 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G + EL+ +++ A Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381 >gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 367 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K V +S G+ V P Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYA 161 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + +D P +KP + GSS+GI K D LD + Sbjct: 162 VIRPREWEQDRSGARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIEEA 219 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ G + EI P +Y +E KY ++ST Sbjct: 220 RRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY--IDSTPG 277 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EVQRLA A A C G+ R+DF V EIN PG TP+S+ Sbjct: 278 IVPAPLTAEETAEVQRLAVAAFDAASCEGLVRADFFLTEDDEFVI-NEINTMPGFTPISM 336 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G S+ EL+ +V+ A Sbjct: 337 YPQMWQASGVSYPELVDRLVQAA 359 >gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478] Length = 370 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 20/268 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK +K+++++ Sbjct: 101 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLLTA 158 Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+PV P ++ ++D + P +KP +GGSS+G+ + +P + ++ Sbjct: 159 DGLPVGPHAVLRPSRPALSLDECERLGLPAYVKPARGGSSIGVSRVSSWDELPAAVAEAR 218 Query: 159 SWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVP-----KSDFYSYELKYSS 208 H ++++E V+G EL CGV+ D ++ + EI V + FY + KY Sbjct: 219 --RHDPKVIVEAAVNGRELECGVLEFPDGTVQASTLGEIRVAGVRGREDAFYDFATKYLD 276 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + +PAK+ D+ V+ LA A AI C+G++R DF + EIN PG Sbjct: 277 DAAELDVPAKVDDDVADAVRDLAIRAFHAIDCQGLARVDFFLTEEGPVIN--EINTMPGF 334 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P M A +G + LL MVE A Sbjct: 335 TTISMYPRMWAASGVDYPTLLATMVETA 362 >gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] Length = 326 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE---------------------DAGFKVSQIDVD 39 + V+ GG SSE EVS+ SG S ++ D F V + D Sbjct: 5 VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDF- 63 Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 S + D A+ +HGN GE+G++Q L+++ +PY+ L A++ DK Sbjct: 64 -SFEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNY 122 Query: 100 VSSCGVPVC-PSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +++ G+ P +LV D + ++ P IKP GSS G+ +K + D Sbjct: 123 LNAFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVK--TAADFDAA 180 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++L+E ++DGIE TCG+ +GD + V E+ VPK +F+ YE KY + S Sbjct: 181 VEGAFKMCREILVESFIDGIEFTCGLYKVGDKKVVMPVAEV-VPKKEFFDYEAKYDAKMS 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++P + +I +Q +A + + C GI R D ++ LE+N PGMT Sbjct: 240 DEIIPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFV--RGEEIIMLEVNTTPGMTAN 297 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+M G R+++ ++E+ Sbjct: 298 SFVPKMVRVMGLPLRDVITGIIEE 321 >gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 326 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 VL K D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++L+E ++DG E+TCG D S +TE+ V ++++ YE KY+ S Sbjct: 183 AKAFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSYNEYFDYEAKYNGA-SD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 355 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 170/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AVL GG SSE +VSL S + A++ +++ I + R Sbjct: 7 VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66 Query: 41 ----------SVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 G +LA P D+ F VLHG +GEDG +Q + ++ +P Sbjct: 67 AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGG 136 GIL SA ++DK +K+++ G+PV SI V F + L SP +V KP++ G Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFV-KPVRQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---E 191 SS+G+ + L++ ++ H D++LIE++V E+ C V+ D +L V+ E Sbjct: 186 SSVGVSKAANAEEFRAALIE--AFKHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGE 243 Query: 192 IAVPKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I + FY+Y+ KY + +PA++P D+ + ++ L+ A +A+GC G++R DF Sbjct: 244 IVTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V E+N PG T +S++P+ G S+ L+ ++E Sbjct: 304 VRPDMSMVVN-EVNTMPGFTNISMYPKAMEATGISYPALVDRLIE 347 >gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1] gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] Length = 360 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338 >gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 366 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLAH--- 48 + V+ GG SSE EVSL S K A++ F V + +D+ S L+ H Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130 P+ S +L SA MDK +K+++ G+ + P I + R F S+ L P +V Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFV- 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ +K + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 185 KPANQGSSVGVSKVKNEAQYQQAVALAFEFDH--KVVVEQGIIGREIECAVLGNDEPQAS 242 Query: 191 EIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V S+FY+Y+ KY N V+PA I I +++ +A A+Q +GC G++R D Sbjct: 243 TCGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG T +S++P++ +G +R L+ +++ Sbjct: 303 VFLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLID 348 >gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] Length = 389 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ DK K++ +S G+ V P + Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R D P +KP +GGSS+GI K D LD + + Sbjct: 185 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + LIE V G E+ CGV+ AS+ V +Y +E KY +++ + Sbjct: 243 RRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273 +PA + + EVQRLA A +A C G+ R+DF L+ F + EIN PG TP+S+ Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 358 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G + EL+ +++ A Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381 >gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)] gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 389 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ DK K V +S G+ V P Sbjct: 124 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYA 183 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + +D P +KP + GSS+GI K D LD + Sbjct: 184 VIRPREWEQDRSGARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIEEA 241 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ G + EI P +Y +E KY ++ST Sbjct: 242 RRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY--IDSTPG 299 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EVQRLA A A C G+ R+DF V EIN PG TP+S+ Sbjct: 300 IVPAPLTAEETAEVQRLAVAAFDAASCEGLVRADFFLTEDDEFVI-NEINTMPGFTPISM 358 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G S+ EL+ +V+ A Sbjct: 359 YPQMWQASGVSYPELVDRLVQAA 381 >gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 150/274 (54%), Gaps = 25/274 (9%) Query: 30 GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 G+KV+++DV F +LHG FGEDG +Q +LEL IP+ LASA+ Sbjct: 91 GYKVTEVDV---------------VFPILHGKFGEDGTIQGLLELSGIPFVGCRTLASAI 135 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVI 144 MDK + ++V+ G+ V SI++ + +++ I P IKP K GSS+GI + Sbjct: 136 CMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSGSSIGITKV 195 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSY 202 + L+ S ++ D+++IE+ ++G E+ C ++G+ + + E+ + DF+ + Sbjct: 196 FHFEQ--LEDAISKAFLEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIELMGDFFDF 253 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY NS +PA++ ++ ++++ A ++ + C G++R D +F ++++ E+ Sbjct: 254 NEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVD-MFLTQGNEIYFNEV 312 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S +P+M + G S+ +++ ++E A Sbjct: 313 NTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346 >gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] Length = 360 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 158/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE EVS+ SG+ A++ F V I Sbjct: 7 VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 37 -----DVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V+ L+ P D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D + Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY NST L PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 366 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/354 (27%), Positives = 170/354 (48%), Gaps = 71/354 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 41 ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 +V L+ LA L D+ F ++HG GEDG +Q +L + Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDSASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 IP+ SG++ SA+SMDK +K+++ G+ + P I + R D+ + P Sbjct: 124 NIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 IKP GSS+G+ ++ +Q++ L +++ ++L+E + G E+ C VMG+ Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237 Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ASL E+ + +FYSY+ KY + + ++PA I + ++ +A A +A+ C Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALEC 295 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG++R D +F + EIN PG T +S++P++ G EL+ ++E Sbjct: 296 RGMARVD-VFLTADNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 348 >gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 326 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 VL K D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E ++DG E+TCG D S +TE+ V ++++ YE KY+ S Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] Length = 325 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 139/260 (53%), Gaps = 15/260 (5%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 H+ D+ F VLHG +GEDG +Q + EL +PY +G+L+SA MDK +K+++++ G+PV Sbjct: 68 HVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 127 Query: 108 CPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 +++ T L+ P +KP +GGSS+GI + + + + L ++ ++ Sbjct: 128 GKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCEARQYDT-- 185 Query: 165 QLLIEQYVDGIELTCGVM--------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++E + G E+ CGV+ + +V FY ++ KY + + ++P Sbjct: 186 KVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMIP 245 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + +Q LA A QA+ C G++R DF E+N PG TP+S++P+ Sbjct: 246 APLDDAATRLIQSLAREAFQALQCSGLARVDFFV--TQAGPVLNEVNTMPGFTPISMYPQ 303 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + A +G + ELL ++ A Sbjct: 304 VFAASGVPYAELLDTLIARA 323 >gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] Length = 389 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 24/263 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ DK K++ +S G+ V P + Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R D P +KP +GGSS+GI K D LD + Sbjct: 185 VIRPREWEQDPEAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFEGLDEAIEEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + LIE V G E+ CGV+ ASL V +Y +E KY +++ + Sbjct: 243 RRHDPKFLIEALVQGREIECGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKYID-SASGL 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273 +PA + + EVQRLA A +A C G+ R+DF L+ F + E+N PG TP+S+ Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEVNTMPGFTPISM 358 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G + EL+ +++ A Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381 >gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 344 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG +SE VSL S + S ++ + + +++ VDR Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213 ++ +++++E ++DG ELTCG V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYNG-QVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] Length = 374 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 13/264 (4%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +V L L D+ F VLHG +GEDG +Q +LE+ +PY SG+ ASA +MDK K ++ Sbjct: 104 AVAGALGDLDVDVVFPVLHGPYGEDGTIQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLL 163 Query: 101 SSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 ++ G+PV P ++ + + + P +KP +GGSS+GI + D LD Sbjct: 164 AAAGLPVGPYAVLRAGETLSEAEKRRLGLPVFVKPARGGSSIGI--SRVDAWADLDTAIK 221 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLN 210 ++ ++L+E + G E+ CGV+ E ++P + FY + KYSS Sbjct: 222 TARESDPKVLVEAAILGREIECGVLDALGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDA 281 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PA +P I V+ A A QA+ C G++R D +F + +V E+N PG TP Sbjct: 282 TRLDVPADLPAGIADRVRAAAGAAFQALDCAGLARVD-VFLTAAGEVVLNEVNTMPGFTP 340 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 S+FP M A +G + L+ +++ Sbjct: 341 SSLFPRMWAASGLDYPALVERLIQ 364 >gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] Length = 345 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ DK K++ +S G+ V P + Sbjct: 81 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 140 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R D P +KP +GGSS+GI K D LD + + Sbjct: 141 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 198 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H + LIE V G E+ CGV+ AS+ V +Y +E KY +++ + Sbjct: 199 RRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 257 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273 +PA + + EVQRLA A +A C G+ R+DF L+ F + EIN PG TP+S+ Sbjct: 258 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 314 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M +G + EL+ +++ A Sbjct: 315 YPQMWEKSGVGYAELVDRLIQAA 337 >gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] Length = 366 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 193 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 251 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 308 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 309 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 344 >gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 364 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 137/252 (54%), Gaps = 12/252 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK +K+V+ + V P + Sbjct: 80 DVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFV 139 Query: 112 LVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +R T D LI+ P +KP GSS+G+ ++ + L + +++H + Sbjct: 140 CFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDH--K 197 Query: 166 LLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLD 222 +L+E V G E+ C V+G+A V V FYSY KY S + V+PA I Sbjct: 198 VLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQ 257 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + +Q++A A+QA+GC G++R D R V E+N PG T +S++P++ +G Sbjct: 258 TQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASG 316 Query: 283 YSFRELLLWMVE 294 +R L+ ++E Sbjct: 317 LDYRGLITRLIE 328 >gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 404 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 22/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE+L+IPY G+LASA MDK +K ++++ G+P + Sbjct: 135 DVVLPLLHGPYGEDGTIQGMLEMLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHV 194 Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V+ DS+ ++ P +KP + GSSLGI +++ + +P + + + Sbjct: 195 VVHPHRWDSERELILDACEALTYPLFVKPARAGSSLGITKVERREDLPAAIEAAREVD-- 252 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213 ++L+E V+G E+ V+ +A P +FY YE KY + ++ Sbjct: 253 PKVLVESGVEGREVEVAVLDGHHGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQ 312 Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA++ + ++ A A +A+G G+ R DF P V E+N PG TP S Sbjct: 313 MVCPARVSHQESELLKETAARAFEALGGEGLMRVDFFLTPRGEAVVN-EVNTMPGFTPFS 371 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M +G S+ +L+ ++E Sbjct: 372 MYPYMWQVSGLSYTDLVSELIE 393 >gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] Length = 354 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 59/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV-- 45 VL GG+S ER+VSL SG L + G + +DV DR G + Sbjct: 5 VLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGLEI 64 Query: 46 -------------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 L +PD + F LHG+ GE+G +QA + Sbjct: 65 SKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATFDN 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131 L I YT L LSM+K+ +KQ+ + GVP + T D+ + P V+K Sbjct: 125 LGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + +S ++ D+++IE ++ G E CG++ +L + E Sbjct: 185 PCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPLVE 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSD 247 I VPK + Y KY + ++ + P P+ + +E +QR A +A+ SR+D Sbjct: 245 I-VPKDGLFDYANKYQAGGASEICP---PVSLDEETQELIQRAGERAFEALRMDVYSRAD 300 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ + + LE+N PGMT S+ P+ A AGY + EL +++++ Sbjct: 301 FIVSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQES 349 >gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I ++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] Length = 356 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 139/260 (53%), Gaps = 15/260 (5%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 H+ D+ F VLHG +GEDG +Q + EL +PY +G+L+SA MDK +K+++++ G+PV Sbjct: 99 HVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 158 Query: 108 CPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 +++ T L+ P +KP +GGSS+GI + + + + L ++ ++ Sbjct: 159 GKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALREARQYD--T 216 Query: 165 QLLIEQYVDGIELTCGVM--------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++E + G E+ CGV+ + +V FY ++ KY + + ++P Sbjct: 217 KVIVESEIIGDEVECGVLEYPDGTVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMIP 276 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + +Q LA A QA+ C G++R DF E+N PG TP+S++P+ Sbjct: 277 APLDDAATRLIQSLAREAFQALQCSGLARVDFFV--TQAGPVLNEVNTMPGFTPISMYPQ 334 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + A +G + ELL ++ A Sbjct: 335 VFAASGVPYAELLDTLIARA 354 >gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 Length = 319 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 8/246 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ LELL PY +G+ ASAL DK SK+V++ GVPV P + Sbjct: 75 DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKRVLAQAGVPVVPWV 134 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V + P+ +KP GSS+GI +++ Q L+ + ++ + ++ ++E+ Sbjct: 135 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191 Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + + EL GV+G+ + + + + + FY YE KY+ + ++PA + + VQ Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA A++ +G RG +R DF +++ E+N PG TP S +P + G ++ EL Sbjct: 252 ELALKAYKVLGVRGXARVDFFL--AEGELYLNELNTIPGFTPTSXYPRLFEAGGVAYPEL 309 Query: 289 LLWMVE 294 L +VE Sbjct: 310 LRRLVE 315 >gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 363 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 17/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG +GEDG VQ +LEL IPY G+LASA+ MDK + + + GVP + Sbjct: 101 DVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANALFEANGVPHTRWL 160 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSW 160 +R+ ++S + + P +KP GSS+GI + + +DL + Sbjct: 161 AADRWEIESDLEGVCDGVEKKLGWPVFVKPANAGSSVGISKVSSRDELKKAIDL----AL 216 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218 + +++ E +VDG E+ C V+G T + ++FY+Y+ KY + S V+PA Sbjct: 217 ENDRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAH 276 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P EV+ A +A+ A+ C G++R DF + + +V EIN PG T +S++P++ Sbjct: 277 LPEAKLDEVKTYAAIAYTALNCEGLARCDFFVEKGTGRVLINEINTFPGFTSISMYPKLM 336 Query: 279 AYAGYSFRELL 289 + G +L+ Sbjct: 337 EHEGLPVPQLI 347 >gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+P+ I +I +++ +A A+Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 352 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 20/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 ++ F +LHG GEDG +Q +L L+ + + SG+L S L MDK+ K ++ G+P Sbjct: 90 EVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYK 149 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + R + S + P P IKP GSS+GI + Q + L ++S Sbjct: 150 AITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNQQELEAALDSAAS 209 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ ++++E V E+ C V+G+ ASL V EI SDFY YE KY+ S+ V+ Sbjct: 210 YDR--RIIVEAGVTAREIECAVLGNDNPQASL-VGEITF-DSDFYDYETKYTDGRSSMVI 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA IP I +V+ +A A +A+ G+SR DF + + +V EIN PG T S++P Sbjct: 266 PANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEKTGEVLINEINTLPGFTNFSMYP 325 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ G F +L+ +V+ Sbjct: 326 QLWKATGLEFDQLVDKLVQ 344 >gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 141/254 (55%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG GEDG +Q +L++ ++PY G+L SAL MDK + K + G+PV + Sbjct: 113 DVIFPVMHGTTGEDGALQGMLDMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYL 172 Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + N++ D + +++ P +KP+ GSS+GI + + ++ ++ Sbjct: 173 VYRRNQWERDPESILNAIEEQLNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAAEYDR 232 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IE+ ++ E C V+G+ V+ + VP ++FY Y+ KY S + PA+I Sbjct: 233 --KVIIERNINCREFECAVLGNDEPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEIS 290 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ +E++R A +A ++ G+SR DF + + KV+ E+N PG T VS++P + Sbjct: 291 QELSQEMRRQALIAFTSLDLSGLSRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEA 350 Query: 281 AGYSFRELLLWMVE 294 +G + EL+ +VE Sbjct: 351 SGIPYPELIDRLVE 364 >gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] Length = 333 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 167/332 (50%), Gaps = 42/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40 +A++ GG + E E+SL S L+ + F V +I +V+R Sbjct: 5 IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ L +K DLAF ++HG+ GEDG +Q L+++ + YT L SAL+M+K +K ++ Sbjct: 65 TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124 Query: 101 SSC-GVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G+ + PS+ ++ T ++ ++ + PY +KP GGSS+G+ +K+ LD Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQ-----LDE 179 Query: 155 LQSS------SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYEL 204 L S+ + N G Q+L+E++V G E + G+ + L TE+ + +F+ +E Sbjct: 180 LSSAIDRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEV-ITTREFFDFEA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + + PA + + V++L + + C+G+ R DF + + K +++EIN Sbjct: 239 KYIPGLTKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINT 298 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S P+ AG + ++E A Sbjct: 299 IPGQTETSFIPQQVRAAGLQETDFYTELIEQA 330 >gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827] gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 355 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG SSE VS S + + L+ F+V + + R V Sbjct: 8 VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67 Query: 46 --------------LAHLKPDLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L + PD A F +LHG +GEDG VQ +LEL ++PY G+ Sbjct: 68 MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLG 140 LASA +MDK +K ++ + G+ V ++ R + + + P +KP + GSS+G Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVT-EIA 193 I K LD + + +++IE V G E+ CGV+ +ASL + Sbjct: 188 I--TKVTDWADLDAAIAFARQTDPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 D+Y ++ KY +PAK+ D + ++ LA A +A+ C+G++R DF F Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDF-FVTE 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG TP+S++P M G S+R+LL +VE A Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETA 347 >gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK2000] gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK966] gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGFKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638] gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 366 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+E EVSL S K A++ + F V Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 34 ------SQIDVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 S+I V G++ L + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130 P+ S +L SA MDK +K+++ G+ + P + + R D QH + P + Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRD-QHSFAQITAQLGLPLFV 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 185 KPANQGSSVGVSKVTSEAQFADAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAS 242 Query: 191 EIA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V SDFYSY+ KY + V+PA + +I +++ +A A+QA+GC G++R D Sbjct: 243 TCGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F V EIN PG T +S++P++ +G S+ EL+ ++E Sbjct: 303 -VFLTAENDVIINEINTLPGFTNISMYPKLWQASGISYPELITRLIE 348 >gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10] gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10] Length = 376 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 156/291 (53%), Gaps = 18/291 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVL-AHLKP--DLAFNVLHGNFGEDGLVQAILELLE 76 K +L AG S I SV ++ ++K D+ F VLHG GEDG +Q + EL Sbjct: 70 KKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLFELAG 129 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 IPY G+L SA+ MDK +K + G+P ++ NR + + + ++ P Sbjct: 130 IPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGRLTYP 189 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+G+ +S+ + L ++ N ++L+E++++G E+ C V+G+ + Sbjct: 190 CFVKPSNAGSSVGVNKASDRESL-VKALNIAAKND-RRILVEEFINGREIECAVLGNDNP 247 Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTH-VLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + VP +DFY YE KY +S+ V+PA + + ++++ A A + + C G+ Sbjct: 248 VASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLDCAGL 307 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 SR DF + +++ EIN PG T +S++P++ A +G + EL+ ++E Sbjct: 308 SRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIE 358 >gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 361 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 59/346 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 ++ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 1 MIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALI 60 Query: 41 -------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ LA L D+ F ++HG GEDG +Q +L ++ I Sbjct: 61 SLNHSNKNVALIPGQQRQQLIAADNGSALAQL--DVIFPIVHGTLGEDGSLQGLLRMVNI 118 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ +G++ SA+SMDK +K+++ G+ V P I + R + + P IK Sbjct: 119 PFVGAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIK 178 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189 P GSS+G+ ++ + + + ++H ++L+E + G EL C V+G D V Sbjct: 179 PANQGSSVGVSKVRNEDEYHQAIALAFDFDH--KVLVESAIVGRELECAVLGNDDPQASV 236 Query: 190 TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSYE KY + + V+PA I ++ +A A +A+ C G++R D Sbjct: 237 CGEVVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDV 296 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V E+N PG T +S++P++ G S+ +L+ ++E Sbjct: 297 FLTP-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIE 341 >gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 370 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354 >gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] Length = 366 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG SSE EVSL S K A++ F V + +D+ Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 41 ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R D + P +K Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189 P GSS+G+ ++ + + ++H ++L+E + G E+ C V+G+ V Sbjct: 186 PANQGSSVGVSKVRNQAEFDHAVELAFRYDH--KVLVESAIVGREIECAVLGNDYPKASV 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V +PA + D+++ ++ +A A QA+ CRG++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V E+N PG T +S++P++ +G + L+ ++E Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIE 348 >gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] Length = 310 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AVL GG S EREVSL SGKA A+AL + F+V DV ++ + L P + F+ L Sbjct: 6 IAVLYGGTSEEREVSLGSGKAAAAALGKS-FEVDLFDV-QAYSRLPDGLDPRRHVVFSTL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG+FGEDG Q +++ + Y ++S L+ DK+ +K+ +S+ GVPV ++ + Sbjct: 64 HGSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAI 123 Query: 119 DSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172 I V+KP+ GSS+G++ + + I L + W L+E + Sbjct: 124 PGVEEIIGRLGSSVVLKPVAQGSSVGLMFAESEAKIVGCLKNCEEGRW------LVEPRI 177 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T G++ ++ V EI PKS + Y KY+ + ++ PA+ ++ + +++LA Sbjct: 178 QGQEATVGILDGEAMGVVEIR-PKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLAT 236 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +A GCR +R D + D ++LEIN PG+ S+ P AA +GY+F ELL + Sbjct: 237 KAFEACGCRDYARIDCMVD-TGGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKL 295 Query: 293 VEDA 296 VE A Sbjct: 296 VEPA 299 >gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 362 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32 + ++ GG SSE EVS++S A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V +I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ AG S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344 >gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] Length = 361 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 170/344 (49%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S L D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPIN 64 Query: 45 --------------VLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + A+ L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 IDVLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I ++ D + ++ P +IKP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + +S ++ ++IE++++ E+ C V+G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKESLKYDL--TIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFL ++ +G RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 351 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/331 (30%), Positives = 159/331 (48%), Gaps = 49/331 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S EREVSLSSG +AL G +V +D Sbjct: 3 IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62 Query: 38 --VDRSV-------------GLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + R V G + + D+ F LHG GE+G +QA+L+ I Sbjct: 63 WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 YT +G +MDK +K ++ + G+P L +R +S P V+KP GS Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLYSR--GESLEPFPYPCVVKPCGCGS 180 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI +++ + + L S++++ D++L E + G E + G++G+ +L EI +PK Sbjct: 181 SVGITMVEGEDQWEMAL--DSAFSYEDRVLAEVKITGREFSVGILGERALPAIEI-IPKK 237 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY YE KY + + + PA + + + + +A H+ +G SR DFL + + Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLMEE-DGSL 296 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F LE N PGMTP S+ P+ A AG S++EL Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQEL 327 >gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 355 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQ----IDVDRSVGLVLA 47 + ++ GG S+E +VS+SS K +A F +++ ID D SV +++ Sbjct: 9 IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG + +L+ P Sbjct: 69 EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----------NRFTMDSQHLISPPYVIK 131 GIL SAL MDK+ K + S+ +P +++ N+ ++ ++ P +K Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + ++S L L+ + W ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVI-NKSALLKALEKA-WEIDARILVEEGLETREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I + SD+Y Y+ KY+S N+ +PAKI I K+++ +A + + + G +R DF Sbjct: 247 IGEVEYGSDWYDYDSKYNS-NNKITIPAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+F EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350 >gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 349 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 48/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ + F V + + + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKL 65 Query: 49 LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L DLA F VLHG GEDG +Q LE+L + Y IL+++ + Sbjct: 66 LTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142 MDK+ +K V + GVP P V F ++Q I+ P +KP GSS+GI Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGI- 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198 K D L S ++ + ++++IEQ VD E+ C V+G+ S DV+ V + Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVE 240 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y KY +PAK+P D+ +++Q A A++A+ G+SR DF F V+ Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDF-FVTKDGNVY 299 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG T S++P + G S+ +L+ +V+ Sbjct: 300 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335 >gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 362 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32 + ++ GG SSE EVS++S A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V +I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ AG S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344 >gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 297 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 130/254 (51%), Gaps = 21/254 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F +LHG +GEDG +Q +LEL+ +PY SG+LASAL MDK +K V+ G+PV P Sbjct: 38 DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMDKHFTKTVLQQAGIPVAPWT 97 Query: 112 LVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + + P +KP + GSS+G+ +++ LD ++ Sbjct: 98 TVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKVREWPE--LDAAMDIAFAED 155 Query: 164 DQLLIEQYVDGIELTCGVMG-----DASLDVT-EIAVPKSDFYSYELKYSSLNSTH-VLP 216 D++LIE V G E+ V+G A V EI V DFY Y KY V P Sbjct: 156 DRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRDFYDYAAKYLDAPGIDLVCP 215 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFP 275 AK+ +++ L A AIG G++R DF L+ + F + EIN PG TP+S+FP Sbjct: 216 AKLTDAELVQMRALGVRAFDAIGGEGLARVDFF---LTAEGFVVNEINTMPGFTPISMFP 272 Query: 276 EMAAYAGYSFRELL 289 G S+ EL+ Sbjct: 273 RCWQETGLSYPELI 286 >gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] Length = 365 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348 >gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis Il1403] gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 349 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 48/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ + F V + + + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKL 65 Query: 49 LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L DLA F VLHG GEDG +Q LE+L + Y IL+++ + Sbjct: 66 LTNDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142 MDK+ +K V + GVP P V F ++Q I+ P +KP GSS+GI Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGI- 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198 K D L S ++ + ++++IEQ VD E+ C V+G+ S DV+ V + Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVE 240 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y KY +PAK+P D+ +++Q A A++A+ G+SR DF F V+ Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDF-FVTKDGNVY 299 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG T S++P + G S+ +L+ +V+ Sbjct: 300 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335 >gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1] Length = 356 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 143/276 (51%), Gaps = 26/276 (9%) Query: 28 DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 DAG +SQ+DV F +LHG FGEDG +Q +LE+ +PY +G+LAS Sbjct: 92 DAGEALSQVDV---------------VFPILHGAFGEDGTIQGLLEMAGLPYVGAGVLAS 136 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVI 144 A+ MDK +K+++ + G+ V I++ T + + P +KP + GSS+G+ + Sbjct: 137 AVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARAGSSMGVTRV 196 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPK--SDFY 200 LD + + H ++L+E V G E+ C V+ D S+ + A + +FY Sbjct: 197 TDPAG--LDAAIAEAREHDPKVLVESAVPGREVECAVLEFPDGSVRASLPAELRYNGEFY 254 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +E KY ++ + PAK+ +I V+ A A +A+ +G++R DF F + Sbjct: 255 DFESKYLDVSELEI-PAKLDDEITDSVRWKAVTAFRALDVQGLARVDF-FVTDDGHITVN 312 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S FP+M A G + ELL MVE A Sbjct: 313 EVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETA 348 >gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 369 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 24/279 (8%) Query: 38 VDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 ++R A L PD+ F +LHG +GEDG +Q +L L+++P+ G+ +S+ MDK + Sbjct: 87 IERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMDVPFVGPGVFSSSAGMDKHFT 146 Query: 97 KQVVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K V+ + G+P V+ + T+DS + P +KP + GSS+GI + Sbjct: 147 KMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPAFVKPSRAGSSVGISKVSDTS 206 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVT---EIAVP-KSDFYS 201 L ++ H ++++E +VDG E+ C V+G D L + EI V +FY Sbjct: 207 GFKAAL--DDAFAHDTKVIVEPFVDGREIECAVLGSVNDRELKASSPGEIIVSGDHEFYD 264 Query: 202 YELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 ++ KY L++T + PA + D+ + V+ +A +A C G++R D P + +V Sbjct: 265 FDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDCTGLTRVDTFVRP-NGEVLVN 323 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295 EIN PG TP S +P M +G ++ ELL VED Sbjct: 324 EINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIAVED 362 >gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 362 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32 + ++ GG SSE EVS++S A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V +I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ AG S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344 >gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKV-----------------SQIDVDRSV 42 +AV MGG S E E+SL SG+ L ++ ++V +I +D+S Sbjct: 5 IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64 Query: 43 GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V+ + +P D FN +HG GEDGL Q L+ LEIP T +AL+ +K V Sbjct: 65 FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124 Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ +I +N+ + I P +K + GSS GI +K I L Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTAL- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 S+ D+++IE ++DG E++ GV+ +L VTEI + +++F+ +E KY S Sbjct: 184 -EHSFKEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEI-ISENEFFDFEAKYLG-KS 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA I K+V+ A + + +G++RS+F+F + + +LE N PG+T Sbjct: 241 KEITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIFH--NNEPHFLECNACPGLTEA 298 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A AG S ++L VE A Sbjct: 299 SILPQQAKAAGISLQDLFTNAVEVA 323 >gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 324 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A+ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E ++ G+E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 EKAFKEAREVLVEAFMQGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322 >gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 353 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 141/261 (54%), Gaps = 12/261 (4%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D+ F VLHG FGEDG VQ +LEL +PY G+LAS++SMDK+ +K +V S G+ Sbjct: 89 VEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGI 148 Query: 106 ------PVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 PV L +N+ ++ IS P IKP GSS GI + + L ++ Sbjct: 149 RQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEA 208 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL 215 + H ++L+E+ + G E+ C V+G + + + ++FY Y+ KY++ +S ++ Sbjct: 209 AE--HDRKILVEETIVGREIECAVLGGMEAKASGVGEILAAAEFYDYDAKYNNADSKTII 266 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 ++P +E+ A +A+ +SR DF + + ++ + EIN PG T +S++P Sbjct: 267 SPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEKDTNEIVFNEINTLPGFTAISMYP 326 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + G + +L+ +++ A Sbjct: 327 MLWEAKGIAKPQLVEKLIQTA 347 >gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20] gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ +SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVASSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLEDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P+IL+ + + + P KP + GSS GI + + I L ++ + Sbjct: 153 PTILLTNHANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTY 210 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIP 220 +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA +P Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLP 270 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 271 ETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329 Query: 281 AGYSFRELL 289 G S++ELL Sbjct: 330 VGLSYQELL 338 >gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus] gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus] gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTERGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1] gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1] Length = 378 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 20/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL + Y +G+LASA+ MDK K V S G+ V P + Sbjct: 112 DVVFPLLHGPWGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYV 171 Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V ++ D++ + + P +KP + GSS+GI K D LD + H Sbjct: 172 AVTDREWSTDAEAVRKRVDKLGFPVFVKPARAGSSMGI--SKVDSMEGLDAAIDEARRHD 229 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHV- 214 +L+IE + G E+ C V+ D +AV + FY + KY + + Sbjct: 230 LKLVIEAGIVGREIECAVLQGRGTDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALS 289 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA +P + V+ LA +A A+G G+SR DF + P + EIN PG TP S++ Sbjct: 290 CPADMPDEAIARVRELAAVAFDAVGAEGLSRVDFFYTPAGELII-NEINTMPGFTPKSMY 348 Query: 275 PEMAAYAGYSFRELL 289 P+M A +G ++ +L+ Sbjct: 349 PQMWAASGLAYGDLI 363 >gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] Length = 385 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + +D P +KP + GSS+GI K D LD + + Sbjct: 180 VIRPREWQRDESAARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSGLDGAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSD---FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ D +P D +Y +E KY ++ST Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EV+RLA A +A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTEEETAEVRRLAVEAFEAASCEGLVRADFFLTEDGDFVI-NEINTMPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+M G + EL+ +V+ A Sbjct: 355 YPQMWQATGIGYPELVDRLVQAA 377 >gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ +SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVASSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLEDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] Length = 364 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F L V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 303 VFLTLENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348 >gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902] gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP + + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS---QHLISP-------PYVIKPLKG 135 SA+SMDK+ K + G+ P + +N + DS +H++ P +KP Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ + +L++EQ VD EL C V+G L + + Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQLD--PRLVVEQGVDARELECAVLGRHQLRSSVVGEV 245 Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNT 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 306 SHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74] Length = 364 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C ++G+ + Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAILGNDNPQ 240 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V SDFY+Y+ KY + V+PA I +I +++ +A ++Q +GC G++R Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|315937026|gb|ADU56035.1| hypothetical protein CA37-12 [uncultured organism CA37] Length = 368 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 152/304 (50%), Gaps = 18/304 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ AL V D+ + L P + VLHGN Sbjct: 9 VLAGGLSLEREVSLRSGRRVFDALRGLDVDVEFGDLGPDLMRALIADPPSVVLPVLHGNP 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG V+ +LEL+ +PY + A L+ DK +K +V+ G+ S+ + R + Sbjct: 69 GEDGTVREVLELVGVPYVGASAEACRLAFDKPLAKALVARAGLGTPASVTLPREAFHDLG 128 Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + LIS P +KP GGS+ G+ ++ +P L+ +++ D LIE+ V Sbjct: 129 AAPLISLILKRLGLPLFVKPRAGGSAFGVGHVQDADQLPAALMACFAYH--DTALIERAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G ++ EI VP+ Y Y Y++ + PA++ V Sbjct: 187 TGVEVAVGVVDLGEGPVAMPAVEI-VPRRGIYDYSAHYTAGATEFFCPARLSDRAAAAVA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + A AH+A+G R +SR+D + D ++F LE V PG+T S F A GY+F + Sbjct: 246 QAALTAHRALGLRDLSRTDLIVDK-DDQLFVLETAVAPGLTDTSTFAMGLAAKGYAFARV 304 Query: 289 LLWM 292 L + Sbjct: 305 WLQL 308 >gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus] Length = 350 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGMFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P+IL+ + + + P KP + GSS GI + + I L ++ + Sbjct: 153 PTILLTNHANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTY 210 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIP 220 +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA +P Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLP 270 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 271 ETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329 Query: 281 AGYSFRELL 289 G S++ELL Sbjct: 330 VGLSYQELL 338 >gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] Length = 364 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG +GEDG VQ +LEL I Y G+LAS++ MDK + + + GVP + Sbjct: 102 DVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWV 161 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 NR+ ++ + + P +KP GSS+GI + + + + + + + Sbjct: 162 AANRWEIEKDLEGVCAGVEQKLGWPVFVKPANAGSSVGISKVSNQEELKAAI--ALALEN 219 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++ E +VDG E+ C V+G T + ++FY+Y+ KY + S V+PA +P Sbjct: 220 DRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLP 279 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 EV+ A +A+ A+ C G++R DF + + +V EIN PG T +S++P++ + Sbjct: 280 EAKLDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEH 339 Query: 281 AGYSFRELL 289 G +L+ Sbjct: 340 EGLPVPQLI 348 >gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec] gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 367 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 17/263 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LE+ +PY SG+ ASA +MDK K ++++ G+PV P Sbjct: 108 DVVFPLLHGPFGEDGTIQGLLEMAGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYA 167 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + + + P +KP +GGSS+GI + D LD ++ + L+ Sbjct: 168 VLRPGQALSEPDRERLGLPVFVKPARGGSSIGI--SRVDAWADLDTALKTARASDPKTLV 225 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221 E V G E+ CGV+ + +VP + FY +E KY S + +PA++P Sbjct: 226 EAAVVGREIECGVLDSLDGSGPQASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPG 285 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ + V+ A A +A+ C G++R D P S ++ E+N PG TP+S++P M A + Sbjct: 286 ELTERVRAAAVAAFEALDCAGLARVDMFVTP-SGEIVLNEVNTMPGFTPMSMYPRMWAAS 344 Query: 282 GYSFRELLLWMVE----DASCLR 300 G + L+ +V+ D + LR Sbjct: 345 GIDYAALVDRLVQLALRDGAGLR 367 >gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 350 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ ASAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQDQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L + ++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AIGLSYQELL 338 >gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] Length = 324 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG +SE +VSL S + S ++ + + +++ D V L + P Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E +++G E+TCG +TE+ V +++F+ Y+ KY+ + Sbjct: 185 --AFGEAQEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEV-VTENEFFDYDAKYNG-QVS 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ +Q L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTHRIQTLTSAIYDILGASGIIRVDYII-TAGDKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 360 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338 >gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 364 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG +GEDG VQ +LEL I Y G+LAS++ MDK + + + GVP + Sbjct: 102 DVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWV 161 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 NR+ ++ + + P +KP GSS+GI + + + + + + + Sbjct: 162 AANRWEIEKDLEGVCAGVEQKLGWPVFVKPANAGSSVGISKVSSQEELKAAI--ALALEN 219 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++ E +VDG E+ C V+G T + ++FY+Y+ KY + S V+PA +P Sbjct: 220 DRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLP 279 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 EV+ A +A+ A+ C G++R DF + + +V EIN PG T +S++P++ + Sbjct: 280 EAKLDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEH 339 Query: 281 AGYSFRELL 289 G +L+ Sbjct: 340 EGLPVPQLI 348 >gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227] Length = 370 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 72 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++E+ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVD- 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F L V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 309 VFLTLENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 354 >gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] Length = 364 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R +S + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQYDQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTAENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] Length = 324 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A+ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + S I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E ++ G E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 183 EKAFKEAREVLVEAFMQGTEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322 >gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 365 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 33/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------SQIDVDRSVGLVLAHLK-- 50 +AV+ GG+SSE +VSL+S + +A G +V + VD G A K Sbjct: 36 IAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPGTTAAWEKLR 95 Query: 51 -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DLA ++HG GEDG++Q LE + + Y SG+L+SA+ +DK +K V + GV P Sbjct: 96 SCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAP 155 Query: 110 SILVNRFTMD--------SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + ++ D +++L I P +KPL+GGSS GI + + ++ D ++ Sbjct: 156 GLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLA-DAVK 214 Query: 157 SSSWNHGDQ-LLIEQYVDGIELTCGVMG--DASLDVTE----IAVPKSDFYSYELKYSSL 209 ++ +Q +LIE V G E+ GV+ D S+ V +A K +F+S E KYSS Sbjct: 215 LAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYSST 274 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + ++PA I + ++ A A+GCRG++R DF D EIN PG T Sbjct: 275 ETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVDDDGTATLN-EINTLPGFT 333 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P + A AG ++ L+ ++E A Sbjct: 334 SHSQVPRIWAAAGVNYEGLVAIIIETA 360 >gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 362 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSS-----------------------GKACASA-----LEDAGFK 32 + ++ GG SSE EVS++S G + A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ AG S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344 >gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R] gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R] Length = 360 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 23/260 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG VQ + L +IP G+LASA MDK +K+++++ G+P+ + Sbjct: 104 DVIFPVLHGRFGEDGTVQGLFALSDIPVVGPGVLASAAGMDKEYTKKLMAAEGLPIGREV 163 Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ T ++L+ P +KP +GGSS+GI + +D + + L ++ H +++ Sbjct: 164 ILRDRTELTEAEKNLLGLPVFVKPARGGSSIGISRVTAWEDFNKAVGLARA----HDEKV 219 Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++E + G E+ CGV+ A L TE FY ++ KY T +P Sbjct: 220 IVESEIVGSEVECGVLQYPDGRIVASVPALLSGTESGA--GGFYDFDTKYLDNVVTAEIP 277 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + +Q LA + QA+ C G++R DF + EIN PG TP+S++P+ Sbjct: 278 APLDEKTTELIQSLAVESFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 335 Query: 277 MAAYAGYSFRELLLWMVEDA 296 M +G ++ ELL +V+ A Sbjct: 336 MFTASGVAYEELLDVLVQQA 355 >gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 362 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32 + ++ GG SSE EVS++S A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ AG S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344 >gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 359 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 63/348 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------------- 39 ++ GG S+E EVSL S K A++ F V+ + +D Sbjct: 1 MVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALI 60 Query: 40 ------RSVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 R+V L+ LA L D+ F ++HG GEDG +Q +L + I Sbjct: 61 SLNHSNRNVALIPGQASQQLITTDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMANI 118 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG++ SA+SMDK +K+++ G+ + P I + R + P IK Sbjct: 119 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIK 178 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187 P GSS+G+ ++ + + + ++H ++L+E + G E+ C VMG+ ASL Sbjct: 179 PANQGSSVGVSKVRNEAEYQRAVALAFDFDH--KVLVESAIVGREIECAVMGNDHPQASL 236 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 E+ + +FYSY+ KY + V +PA I D+ ++ +A A QA+ C G++R Sbjct: 237 -CGEVVI-SDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARV 294 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P + EIN PG T +S++P++ G EL+ ++E Sbjct: 295 DVFLTP-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIE 341 >gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5] Length = 371 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 50/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44 + VL GG S+ERE+S+ +G AL G +D+ D V Sbjct: 28 IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87 Query: 45 VLAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 +++ D+ F LHG+ GEDG VQA +LL I Sbjct: 88 AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147 Query: 78 PYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134 YT +G L+SAL+MDK +K++ + P S+L T + L + P V+K Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ + + ++++ D++++E+Y+ G E + V+ + + EIA Sbjct: 208 GGSSVGVYIVNNQKEYEDAI--DGAYSYEDEVVVEEYIRGREFSVAVVDGKAYPIIEIA- 264 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK FY Y+ KY + ++ PA+I ++ +++Q A +A+ G +R DF+ + Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMMKE-N 323 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ LE N PGMTP S+ P+ A G + +L ++ Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELI 362 >gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60] Length = 367 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S E EVSL S K A++ + F V+ I +D+ Sbjct: 6 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65 Query: 43 GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77 + L H + LA F ++HG GEDG +Q +L++L + Sbjct: 66 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLIS---PPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T D + L S +K Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ A V Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S V+PA + + + V+ A A QA+ CRG++R D Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G ++ L+ ++E Sbjct: 303 VFLTEDNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIE 348 >gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103] gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103] Length = 365 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 + ++ GG SSE EVSL S K A++ F+V + +D+ + +L P Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISP---PYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + M D + +I+ P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ + + L ++ +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S H V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDA-FYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ E+N PG T +S++P++ AG S+++L+ ++E Sbjct: 303 VFYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIE 348 >gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ ASAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGMFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQRQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFA 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L + ++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 365 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S+E EVSL S K A++ F V + +D+ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 43 GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77 + L H D+A F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V R +D + +I+ P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G V K D D + +++ ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVG--VSKVDSIEEFDAALALAFSFDRKVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S N V+PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVD 302 Query: 248 -FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + ++ E+N PG T +S++P++ AG S+R+L+ +++ Sbjct: 303 VFLTD--AGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLID 348 >gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355] Length = 365 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 + ++ GG SSE EVSL S K A++ F+V + +D+ + +L P Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISP---PYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + M D + +I+ P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ + + L ++ +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S H V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDA-FYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ E+N PG T +S++P++ AG S+++L+ ++E Sbjct: 303 VFYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIE 348 >gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843] gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 352 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 20/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 ++ F +LHG GEDG +Q +L L+ + + SG+L S L MDK+ K ++ G+P Sbjct: 90 EVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYK 149 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + R + S + P P IKP GSS+GI + Q + L ++S Sbjct: 150 AITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNRQELEAALDSAAS 209 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ ++++E V E+ C V+G+ ASL V EI SDFY YE KY+ S+ V+ Sbjct: 210 YDR--RIIVEAGVTAREIECAVLGNDNPQASL-VGEITF-DSDFYDYETKYTDGRSSMVI 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA IP I +V+ +A A +A+ G+SR DF + + +V EIN PG T S++P Sbjct: 266 PANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVENTGEVLINEINTLPGFTNFSMYP 325 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ G F +L+ +V+ Sbjct: 326 QLWKATGLEFDKLVDKLVQ 344 >gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 364 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348 >gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 335 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 164/335 (48%), Gaps = 47/335 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VSL S + S L+ ++V S+ +VDR+ Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151 GV V S++V + +HLI+ P +KP GGSS G+ +K I Sbjct: 125 KGFGVSVSESLIVRK---GFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIH 181 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207 +L+ + D++++E +++G E++ G +V TE+ V ++F+ Y KY+ Sbjct: 182 EAILK--AMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN 238 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-------RKVFWL 260 + PA++ + + V + + + +GC GI R D++ + ++ L Sbjct: 239 G-QVREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINML 297 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 E+N PGMT S P+ AG +++L ++E+ Sbjct: 298 EVNTTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 140/258 (54%), Gaps = 24/258 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + IP+ SG+L SA+SMDK +K+++ G+ + P I Sbjct: 35 DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFI 94 Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWN 161 + R D+ + P IKP GSS+G+ ++ +Q++ L +++ Sbjct: 95 TLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYEQAVAL------AFD 148 Query: 162 HGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 ++L+E + G E+ C VMG+ ASL E+ + +FYSY+ KY + + ++P Sbjct: 149 FDHKVLVESAIVGREIECAVMGNDNPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIP 206 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A I + ++ +A A +A+ CRG++R D P +R V EIN PG T +S++P+ Sbjct: 207 ASIGSAVSDNIRAVALAAFRALECRGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPK 265 Query: 277 MAAYAGYSFRELLLWMVE 294 + G EL+ ++E Sbjct: 266 LWRATGVGSTELITTLIE 283 >gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] Length = 364 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ F+V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM---DSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + NR T D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAQYAQAVALAFEFDH--KVVVEQGIVGREIECAVLGNDRPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 303 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIE 348 >gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] Length = 365 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348 >gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 348 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/333 (30%), Positives = 161/333 (48%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG VQ LE+L++PY + IL+S+++ Sbjct: 66 MTNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ P + ++ + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KAEDEAALRSAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I DI +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334 >gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 364 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 365 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348 >gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_06A21] Length = 359 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 170/345 (49%), Gaps = 53/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 M +L GG S+E EVS+ S ++ +A++ ++ + + R +LA Sbjct: 1 MLLLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVD 60 Query: 48 -------------------HLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + P D+ F +LHG FGEDG +Q +LEL+ + Y Sbjct: 61 DMSLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVG 120 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKP 132 +G+ AS++ MDK +K + ++ G+ ++ NR+ D++ ++ P +KP Sbjct: 121 AGVAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKP 180 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE 191 GSS+G+ K S+ L ++ ++ ++L+E+ V D E+ C V+G+ S + Sbjct: 181 ANMGSSVGVSKAKDAASLTKALDIAAQYDV--KMLVEESVEDCHEVECAVLGNDSPRASI 238 Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +P +DFY Y+ KY S ++PA + + VQ +A A Q+I C G++R DF Sbjct: 239 IGEIIPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFF 298 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F EIN PG TP+S++P + +G ++ EL+ +++ Sbjct: 299 VRRADDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQ 343 >gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1] gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1] Length = 353 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 140/262 (53%), Gaps = 20/262 (7%) Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 +L H+ D F +LHG GEDG VQ ++ L IP + +SAL MDK R+ Q+V+ Sbjct: 90 FILVHI--DAIFPILHGKNGEDGTVQGLIALSGIPLIGCSVASSALCMDKERAHQIVNHA 147 Query: 104 GVPVCPSILVNR---FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 G+ V S ++ + + + +S P +KP+K GSS GI + LD ++ + Sbjct: 148 GIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKAGSSYGITKVTH-----LDEIEKA 202 Query: 159 ---SWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNST 212 ++ + +++LIE+ ++G E+ C VMG L V EI + + F+ + KY+ +S Sbjct: 203 IEFAFTYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEIELSQG-FFDFTEKYTLKSSQ 261 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +PA+I I K +Q A + ++A+GC+ +R D P + VF E+N PG T S Sbjct: 262 IHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTPENEIVF-NEVNTIPGFTSHS 320 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 FP M GYSF +L ++E Sbjct: 321 RFPSMLQGIGYSFENILDKLIE 342 >gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 369 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 10 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 70 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 247 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + L+ ++E Sbjct: 307 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 352 >gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118] Length = 360 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 + ++ GG SSE EVS+ SG A++ F V I + D S Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 44 LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + H + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY NST L PA +P +I V++ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343 >gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] Length = 360 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 157/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE EVS+ SG A++ F V I Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 37 -----DVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V+ L+ P D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D + Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY NST L PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] Length = 390 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S E EVSL S K A++ + F V+ I +D+ Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88 Query: 43 GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77 + L H + LA F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHL---ISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T D + L + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ A V Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 266 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S V+PA + + + V+ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVD- 325 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G ++ L+ ++E Sbjct: 326 VFLTEDNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIE 371 >gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 364 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ + G +L P Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I V R +D+Q +++ P IK Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---AS 186 P GSS+G+ + ++ + LDL ++ ++LIEQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDL----AFTFDRKVLIEQGIKGREIECAVLGNDEPVA 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 E+ V + FYSY+ KY + + V+PA I + ++ +A A QA+ C G++R Sbjct: 242 SPCGEVVVHDA-FYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMAR 300 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D +F ++ E+N PG T +S++P++ AG S+ L+ ++E Sbjct: 301 VD-VFLTEDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIE 348 >gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9515] gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515] Length = 355 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---------------------------------E 27 + ++ GG S+E VS+SS K AL E Sbjct: 9 IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68 Query: 28 DAG---FKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++G F+ Q +R + + L D+ F +LHG GEDG + +L+ + P Sbjct: 69 NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GI SA+ MDK+ KQ+ S+ +P + + + + ++ ++ P +K Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I + LQ + W +++IE+ ++ EL CG++G+ L ++ Sbjct: 189 PANSGSSLGISKAKNKSEI-IKALQKA-WEIDSRIVIEEGLNVRELECGIIGNLKLSTSK 246 Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I SD+Y Y+ KYS+ N ++PA I I ++++ LA + +A+ G +R DF Sbjct: 247 IGEVSYSSDWYDYDSKYSTDNKI-IIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +SRK+F EIN PG T S+FP + +G + +L+ +++ Sbjct: 306 LEKISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350 >gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] Length = 335 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 165/335 (49%), Gaps = 47/335 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VSL S + S L+ ++V S+ +VDR+ Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151 GV V S++V + +HL++ P +KP GGSS G+ +K I Sbjct: 125 KGFGVSVSESLIVRK---GFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIH 181 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207 +L+ + + D++++E +++G E++ G +V TE+ V ++F+ Y KY+ Sbjct: 182 EAILK--AMHESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN 238 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-------RKVFWL 260 + PA++ + + V + + + +GC GI R D++ + ++ L Sbjct: 239 G-QVREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINML 297 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 E+N PGMT S P+ AG +++L ++E+ Sbjct: 298 EVNTTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 376 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ + F V + +D Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 77 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 254 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 313 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + L+ ++E Sbjct: 314 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 359 >gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V A+ D F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 353 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EV+ S A++ + V+ I + + ++ Sbjct: 7 LGVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQ 66 Query: 47 ---AHLKPDLA-------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 HL+ D + F ++HG GEDG +Q + E++ PY G+LASA+ Sbjct: 67 EDTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVG 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGII 142 MDK+ SK + G+PV P + + S + P IKP+ GSS+GI Sbjct: 127 MDKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGIT 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDF 199 + + Q + N+ ++L+E ++D E+ C V+ + T + V +F Sbjct: 187 KAHDRAELIAGVHQ--ALNYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEF 244 Query: 200 YSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 Y YE KY+ + + +PA+I +++ A A AI G+SR DF D +++ Sbjct: 245 YDYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLY 304 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 E+N PG T +S++P M + G S+ EL+ ++ A+ Sbjct: 305 INEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343 >gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] Length = 349 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 168/341 (49%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKP---- 51 +A++ GG S+E EVS+ S ++ + L+ + + + I + ++ L +L Sbjct: 8 IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 DLAF VLHG +GEDG +Q E+L+IPY + +SA+ Sbjct: 68 IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSL 139 SMDK K++ + +P ++ + F + + P+ +KP GSS+ Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVP 195 GI + + ++ + +S++ H ++++IE +V E+ ++ D + V+ EI + Sbjct: 188 GITKVNEKKNFAEAI--NSAFEHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEI-IA 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + DFY Y+ KY + V+PA+I I KE++ LA A A+G ++R DF + Sbjct: 245 QHDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NN 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P + +G+ +++LL M+E A Sbjct: 304 DLLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344 >gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 354 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 40/306 (13%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 ++ EREV+LS + DA G VLA + D F VLHG +GEDG Sbjct: 66 VAGEREVALSVNPSRRGEFYDA-----------RTGEVLATI--DAVFPVLHGTYGEDGT 112 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---- 123 +Q +L+L +PY G+L+SA SMDK +K V S VPV +++ +D +HL Sbjct: 113 IQGLLDLAGVPYVGPGVLSSACSMDKQFTKIVARSADVPVTREVVL----VDDEHLDDSD 168 Query: 124 ---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP +GGSS+GI K D LD + + +++IE + G E+ G Sbjct: 169 RDYLGLPVFVKPARGGSSIGI--NKVDSWDQLDDAVRFARLYDSKVIIEAELVGDEVEVG 226 Query: 181 VMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V+ + D+ IA P + FY +E KY T +PA + +++ L Sbjct: 227 VIERPNGDL--IASPPAKLNGTSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEEL 284 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ CRG++R DF S E+N PG T +S+FP++ AG S+ ELL Sbjct: 285 AIRTFRALDCRGLARVDFFV--TSEGPMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLE 342 Query: 291 WMVEDA 296 ++ A Sbjct: 343 TLIATA 348 >gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 371 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 33/284 (11%) Query: 27 EDAGFK---VSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 EDAG + V D +RS+G V D+ F +LHG GEDG VQ +LEL +PY S Sbjct: 83 EDAGSRELTVRDADGTERSLGPV------DVVFPILHGTQGEDGTVQGMLELAGLPYVGS 136 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLK 134 G+LASAL MDK +K V+ + G+ V P V+R + + P +KP + Sbjct: 137 GVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGLPAFVKPAR 196 Query: 135 GGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLD 188 GSS+G+ V+ D LD ++ D++L+E + G E+ C ++ + S Sbjct: 197 AGSSVGVSRVVATDG---LDAALEVAFREDDRVLVESGLVGREVECAILDEGPGRAPSAS 253 Query: 189 VT-EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V EI V DFY ++ KY + V PA + E++ L+ A +A+ RG++R Sbjct: 254 VAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVDARGLARV 313 Query: 247 DFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF L+ F L EIN PG TP+S+FP +G ++ +L+ Sbjct: 314 DFF---LTADGFVLNEINTMPGFTPISMFPACWEASGLAYPDLI 354 >gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi] gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi] Length = 361 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I ++ +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI V + I + + + +LIE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQI--EFFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA++ + ++ AFL ++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 S K++ EIN PG T +S+F +M ++ G F++L+ Sbjct: 303 KSGKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLV 339 >gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 351 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 106/348 (30%), Positives = 161/348 (46%), Gaps = 56/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRS--------------- 41 + ++ GG+S E EVS+ S + AL+ F V I +D+ Sbjct: 8 VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67 Query: 42 ------------VGLV-LAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V + L HL K + F VLHG GEDG +Q +L PY SG Sbjct: 68 DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHL----------ISPPYVIKP 132 +L SAL MDK+ K S+ G+P ++ + D + L + P IKP Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187 Query: 133 LKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 GSS+GI KK+ LDL ++++E+ + EL C V+G + + Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQLD----SRIVVEKNIKARELECAVIGKKQIKTS 243 Query: 191 EIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + SD+Y Y+ KYS ++ ++PA IP I KEVQ L+ LA +AI GI+R DF Sbjct: 244 CVGEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDF 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +D ++ EIN PG T S++P + +G +L+ ++E A Sbjct: 304 FYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351 >gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13] Length = 356 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 168/340 (49%), Gaps = 52/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV------------------------SQI 36 + +L GG S+E +VSL + A A++ F+V Q+ Sbjct: 5 LHLLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQL 64 Query: 37 DVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ G +A L + F +LHG GEDG VQ +LELL +PY +G+LA Sbjct: 65 KLEEG-GTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137 S+ MDK+ K + G+P R + + + P +KP GS Sbjct: 124 SSAGMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIA 193 S+GI K + L+ ++++ ++++EQ ++G E+ GV+G+ + + EIA Sbjct: 184 SVGISKAKNREE--LETAFREAFDYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIA 241 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 PK++FY Y+ KY ++ ++PA+I DIY++V+ +A A +AI G+ R+DF F Sbjct: 242 -PKTEFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADF-FLTK 299 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 K++ E+N PG TP S+FP + + S+ +L+ +V Sbjct: 300 EGKLYINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLV 339 >gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] Length = 361 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 142/256 (55%), Gaps = 23/256 (8%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +++K D+ F VLHG GEDG +Q I ++ E+P+ +++SA MDK + ++ + G+ Sbjct: 96 SNIKVDVVFPVLHGKNGEDGTIQGIFQMAEVPFVGCDLISSACCMDKDVTHTILEAHGIK 155 Query: 107 VCPSI---------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 I L + + + L P YV KP GSS+GI ++ L+ L++ Sbjct: 156 TAKWISMIYRDLAELDEKCALMEKKLGYPMYV-KPANCGSSVGI-----SKAHDLEELKA 209 Query: 158 ---SSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNS 211 +++ H ++++EQ V G+EL C VMG+ + V +IA ++FY Y+ KY++ S Sbjct: 210 GIKAAFTHDQKVVVEQEVKGVELECAVMGNDTPFASTVGQIAAA-NEFYDYDAKYNNAAS 268 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 +PA + + +EV+ +A A +A+GC G++R DF +V EIN PG T + Sbjct: 269 KTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARVDFFLSDKG-EVILNEINTLPGHTKI 327 Query: 272 SIFPEMAAYAGYSFRE 287 S++P++ +AG S+ E Sbjct: 328 SMYPKLMEHAGISYAE 343 >gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197] gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197] gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] Length = 364 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAADLAFEFDH--KVIVEQGLKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 >gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571] gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463] Length = 360 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 + ++ GG SSE EVS+ S + A++ F V I + D S Sbjct: 7 VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 44 LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + H + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FYSY+ KY NST L PA +P +I V+R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDD-NSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017] gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 365 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 137/257 (53%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F LHG FGEDG +Q +LEL +IPY SG+ ASA +MDK +K+++++ G+ V Sbjct: 104 DVVFPALHGAFGEDGTIQGLLELADIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYA 163 Query: 112 LVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 +V R + + + P +KP + GSS+GI + D S LD + + ++L Sbjct: 164 VVRRGQDTLPAEERERLGLPVFVKPARAGSSIGISRV-TDWS-QLDAAIAHARQTDPKVL 221 Query: 168 IEQYVDGIELTCGVM--GDASLDV---TEIAVPKSD---FYSYELKYSSLNSTHVLPAKI 219 +E G E+ CGV+ D ++ +EI V D +Y +E KY ++ +PAK+ Sbjct: 222 VEAETVGREVECGVLEFADGRVEASFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKL 281 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I + ++ +A A A+ C+G++R DF P + E+N PG TP S +P+M Sbjct: 282 DDTITERLRDMAVRAFTALECQGLARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWE 340 Query: 280 YAGYSFRELLLWMVEDA 296 G + LL +VE A Sbjct: 341 VTGIDYPTLLTTLVETA 357 >gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1] gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1] Length = 360 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDV-- 38 +A+L GG SSE E+S+ S KA ++ ++ + KV +D+ Sbjct: 6 VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65 Query: 39 ----------DRSVGLVLAHLKPDL------------AFNVLHGNFGEDGLVQAILELLE 76 +R + + + DL AF VLHG +GEDG +Q +LE+ Sbjct: 66 LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVC-------PSILVNRFTMDS--QHLISPP 127 IPYT + +S+++MDK +K G+ V P L NR + + +PP Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186 + +KP GSS+GI I + L ++ + ++L+E+ ++G E+ V+G+ Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRLDV--KILVEKAIEGREVEVAVLGNEHP 243 Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V P DFY + KY ++ +PA++ D +Q A +A+GC G+SR Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + S ++ EIN PG T +S++P + +AG F EL+ +V A Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354 >gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 377 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 134/260 (51%), Gaps = 20/260 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LEL ++ Y +G+LASA+ MDK K V+ G+PV P Sbjct: 111 DVVFPLLHGPFGEDGTLQGLLELADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYT 170 Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ +++ + P +KP + GSSLGI + +P + ++ H Sbjct: 171 VILPRDWETRREEATAAVARLGLPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHD 228 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214 ++++EQ ++G E+ C V+G S ++P FY +E KY ++ + Sbjct: 229 PKVIVEQGIEGREVECAVLGGRSGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLR 288 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA +P + +V+ +A A+G G+SR D P R V EIN PG TP S++ Sbjct: 289 CPADLPDKVVAQVRSIAVRTFDAVGAEGLSRVDVFVTPDER-VIVNEINTMPGFTPFSMY 347 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P M G ++ +L+ +++ Sbjct: 348 PRMWEATGLTYPQLIDELIQ 367 >gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 11/249 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ ASAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P+IL+ Q + + P KP + GSS GI + + I L ++ + Sbjct: 153 PTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAY 210 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIP 220 +L+++ + G+E+ CG++G+ SL V F+ +E KY +++ +PA +P Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLP 270 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 I +V+ A L + ++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 271 ETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329 Query: 281 AGYSFRELL 289 G S++ELL Sbjct: 330 IGLSYQELL 338 >gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/339 (29%), Positives = 167/339 (49%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41 + VL GG S+ER VS++SG AL G + S+ DVD + Sbjct: 3 IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62 Query: 42 VGLVLA------HLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 + A +K D+ F LHG GEDG VQA +L+ I Sbjct: 63 SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122 Query: 79 YTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKG 135 YT +G L+SAL+MDK +KQ+ +++ P S++ T D + L + P V+K G Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ DQ+ L+ ++++ +++++E+Y+ G E + V+ + + EIA P Sbjct: 183 GSSVGVYIV-NDQAEYEQALK-DAYSYENEVVVEEYIKGREFSVAVVDGKAYPIIEIA-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY Y+ KY + ++ PA+I ++ +++Q A +A+ G R DF+ + Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMMKE-NG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + L ++E Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337 >gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 348 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 95/332 (28%), Positives = 169/332 (50%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P V ++ + +R +++ ++S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 + ++ + +L + +++ ++LIEQ V E+ G++G+ + T E+ V DFY Sbjct: 186 ESEEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I ++ A A +AIG G+SR DF +++ E Sbjct: 243 YQAKYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + + G S+ EL+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWEHMGLSYAELIEELV 333 >gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 348 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + +S P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGI--SKS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 186 ENQTELRAALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 304 TMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] Length = 394 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 19/254 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG FGEDG +Q LEL +I Y SG+ ASA MDK K V + G+PV P Sbjct: 129 DVVLPLLHGPFGEDGTLQGFLELSDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYA 188 Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ +DS + P +KP + GSS+GI K D L+ + H Sbjct: 189 VITDRAWRADRAAALDSCAALDFPVFVKPARAGSSMGI--SKVDDPGLLEAAIERAREHD 246 Query: 164 DQLLIEQYVDGIELTC------GVMGDASLDVTEIAVPKSD-FYSYELKY-SSLNSTHVL 215 ++++E + G E+ C G G + V E+AV + FY +E KY + + Sbjct: 247 PKVIVEAGITGREIECAVLEGHGTQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSC 306 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA +P + EV+RL+ A +A+GC G++R D + R V EIN PG TP S++P Sbjct: 307 PADVPAHVSDEVRRLSAAAFEALGCEGLARVDCFYAEDGR-VLINEINTMPGFTPHSMYP 365 Query: 276 EMAAYAGYSFRELL 289 M A +G + L+ Sbjct: 366 RMWAASGLPYTALI 379 >gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 322 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 167/326 (51%), Gaps = 38/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------SQIDVDRSVGL 44 +A++ GG SSE EVSL S S + D K + +D++ Sbjct: 4 IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63 Query: 45 VLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 +A K D A+ +HG GE+G++Q +L+ +P++ +LASAL+ +K + Sbjct: 64 FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123 Query: 102 SCGVPVCPSILV-NRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + V S+L+ +D++ ++ P +KP GGSS +K D+LQ Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSK-----DMLQQ 178 Query: 158 S---SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 + ++ D++++E +VDG E+TCG+ L +TE+ V K++F+ Y KY++ Sbjct: 179 AIEEAFAEADEVIVESFVDGTEVTCGMYKTKGKTVILPLTEV-VSKNEFFDYNAKYNN-Q 236 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S + PA+I + + +++ ++ I +GI R+D++ +P S ++ LE+N PGMTP Sbjct: 237 SDEITPARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEP-SGRIVLLEVNTTPGMTP 295 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG E++ ++ED+ Sbjct: 296 QSFLPQQIRAAGMDIAEVMRDIIEDS 321 >gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 321 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 18/297 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S EREVSL SG AL G + DVD + LA PD+ F VLHG Sbjct: 9 ILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG ++ +L+L +PY + A ++ DK +K V + GV ++ + R + Sbjct: 69 GEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + LI P V+KP GGS+ G+ + + L+ S + + D LIEQ V Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVTHVDDAGGLAEALM--SCFGYHDSALIEQAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G +L EI P++ Y Y +Y++ ++ PA++ D+ Sbjct: 187 AGVEIAIGVVDSGDGPVALPAVEIE-PRAGVYDYAARYTAGATSFFTPARLHKDVLWAAA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+ +G R +SR+D + D F LE+NV PGMT S +P AG F Sbjct: 246 ETALTAHRVLGLRDLSRTDMIVDRDGVAQF-LEVNVAPGMTDTSTWPMGLHAAGLDF 301 >gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] Length = 359 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 149/282 (52%), Gaps = 18/282 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++A F S+ +V V + LK + + F VLHG GEDG +Q + E++++PY G+ Sbjct: 70 QEAHFATSEGEVSTGVLVTPYDLKEEECVVFPVLHGPNGEDGTIQGLFEMMDVPYVGCGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLK 134 LASA MDK+ SKQ+ G+P P + N+ F LI P +V KP Sbjct: 130 LASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVFV-KPAN 188 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEI 192 GSS+GI + + + ++++ ++ ++++EQ ++ E+ C V+G+ A+ V Sbjct: 189 MGSSVGISKAENREELTTAIVEALKYDR--RIVVEQGIEAREIECAVLGNDEANTSVVGE 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V S FY Y KY + T +PA+I ++ +V+ + A +AI G++R DF Sbjct: 247 IVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCDFFLTE 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ E+N PG T S++P + G S+++L+ +++ Sbjct: 307 -TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQ 347 >gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099] gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099] Length = 357 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG VQ E+ ++ Y GILASA +MDK +K+++ G+ V S+ Sbjct: 98 DVVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSV 157 Query: 112 LVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 V + + S I+ P+ KP + GSS G+ + + ++ + + L Sbjct: 158 TVLKGDVGSFQEIAGALGLPFFAKPARQGSSFGVSKVHDRDG--FEQAVETALRYDSKAL 215 Query: 168 IEQYVDGIELTCGVM--GDASLDVTE----IAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220 IE++VDG E+ C V+ D SL V+ I K FY+YE KY V +PA +P Sbjct: 216 IEEFVDGREIECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVP 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ +A A +A+GC ++R DF F + E+N PG T +S++ + A Sbjct: 276 ADVVARTSEMAARAFRALGCEAMARVDF-FLRADGSLLVNEVNTLPGFTDISMYAKALAA 334 Query: 281 AGYSFRELLLWMVEDA 296 AG + +++ ++E A Sbjct: 335 AGIGYSKVIDVLIEHA 350 >gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 348 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + + +S P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGI--SKS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 186 ENQTELRTALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 304 TMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] Length = 348 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 95/326 (29%), Positives = 159/326 (48%), Gaps = 43/326 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ F V + ++ + A Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L +PY + +L+S+++MD Sbjct: 68 NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K V+ S GVP + + SQ L P +V KP GSS+GI + Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFV-KPANMGSSVGISKAE 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYE 203 D + L + + ++LIEQ V E+ G++G++ + T+ D FY YE Sbjct: 187 TDGELREAL--ELALKYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY + +PA++P ++ +++ A A +AIG G+SR DF S +++ E+N Sbjct: 245 AKYIDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTE-SGEIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289 PG T S++P + G +++L+ Sbjct: 304 TMPGFTQWSMYPLLWENMGLPYKDLI 329 >gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228] Length = 350 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLA---- 47 +A+ GG S+E E+SL S ++ +A + + + + +D+ S ++L+ Sbjct: 8 IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LK DL F VLHG FGEDG +Q LE L+I Y + +SA+ Sbjct: 68 VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 MDK KQ+ + +P + N+ ++ + P+ +KP GSS+ Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEIA--VPK 196 GI +K +S L + ++ +L+IE+ + EL V+ + + V+ + + Sbjct: 188 GINQVKDFKSFVKALAEGFKYDL--KLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +DFY Y+ KY + ++PA + +++ ++ A QAIG G+SR DF D Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG T S++P + G SF E+L +V+ Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343 >gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] Length = 359 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 56/339 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVDRSVGLVLA--------- 47 + +L GG S+E EVSLS+ +A AL ++V I D + G L Sbjct: 5 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64 Query: 48 -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 +K D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 65 QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R + + Q +I P +KP Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + ++ ++++EQ + E+ V+G+ D E++VP Sbjct: 185 GSSVGISKATDREQLVKAIEVALQYDR--KIVVEQGIVAREVELAVLGN---DYPEVSVP 239 Query: 196 K-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +DFY Y+ KY ++ ++PA++P++ ++ LA A +AI G+ R+DF F Sbjct: 240 GEIKPVTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADF-F 298 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 V+ E+N PG TPVS++P + + S+ EL+ Sbjct: 299 VTAENNVYINEVNTMPGFTPVSMYPLLWQHTNVSYPELI 337 >gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 330 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 158/322 (49%), Gaps = 38/322 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ERE SL+SGK +ALE+AG KV +D + L +PD+ ++ LHG Sbjct: 5 VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64 Query: 61 NFGEDGLVQAILELLEIPY--THSGILASALSMDKMR-----SKQVVSSCGVPVCP-SIL 112 GEDG +Q++LE L+IP+ + S + + D M + + + P I Sbjct: 65 KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124 Query: 113 VNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + R + P +KP GGS++G+ + + +L + S+ Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAILDALSF 184 Query: 161 NHGDQLLIEQYVDGIELTCGVMG---DA-SLDVTEIAVPKSDFYSYELKYSSLNSTH--- 213 + + ++IEQ+V+G+E+ V+G DA +L EI VPK F+ E + + Sbjct: 185 D--EAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEI-VPKQGFFGTEARMEPGAVQYIAP 241 Query: 214 VLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 V PA + D I E++R A ++A R ++R D ++D +VF E+NV PG Sbjct: 242 VRPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPG 299 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 M S+FP AG S +L Sbjct: 300 MAERSLFPAACEAAGLSLSSVL 321 >gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] Length = 375 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 + ++ GG S+E EVSL S K A++ F V + +D+ + +L A Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 77 HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R ++ + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDRPQAST 254 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVD- 313 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 314 VFLTAENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 359 >gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] Length = 358 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 30/304 (9%) Query: 4 LMGGISSEREVSLSSGKACA-SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 L G +SS +E+ S G+A +AL F+ +Q D+ D+ F +LHG Sbjct: 54 LQGPVSSVKELEFSQGEALPPTALAPTLFQGAQ---DKG--------PFDVIFPLLHGPN 102 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG VQ +LELL +PY +G+LAS+ MDK+ K + + G+P + R ++ Sbjct: 103 GEDGTVQGLLELLNLPYVGNGVLASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENET 162 Query: 121 -------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P +KP GSS+GI + ++ ++ +++IE+ V Sbjct: 163 EAAYDQVERELGYPCFVKPANLGSSVGISKCMNRSELEEAFKEAFQFDR--KIIIEEGVT 220 Query: 174 GIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+ GV+G+ V VPK +FY Y+ KY ++ ++PA+I Y E++ +A Sbjct: 221 AREIEAGVLGNDYPECSVAGEIVPKVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMA 280 Query: 232 FLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +A+ C G+ R+DF L+R K++ E+N PG TP S+FP + + G + +L+ Sbjct: 281 IKAFKALDCSGLVRADFF---LTREGKLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLI 337 Query: 290 LWMV 293 +V Sbjct: 338 ERLV 341 >gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] Length = 321 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 156/315 (49%), Gaps = 42/315 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 + + GG SSE E+SL S + G++V I V S Sbjct: 4 VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + K D+ +HGN GE+G +QA+L++ +PY +S LAS LS DK Q ++ Sbjct: 63 YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122 Query: 102 SCGVPVCPSILVN---RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLD 153 GVPV S+ +N +FT +Q ++ P +KP GSS GI + K D + LD Sbjct: 123 RFGVPVAKSLFLNSPKKFT--NQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALD 180 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 ++ GD ++IE ++ G E+TCG+ G +L +TEI V ++DF+ YE KY Sbjct: 181 ----KAFEEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEI-VTENDFFDYEAKYLG- 234 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+IP I + V + + + + I+R DF+ + + +E+N PG + Sbjct: 235 QSQEITPARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFS 292 Query: 270 PVSIFPEMAAYAGYS 284 S+ P+M A AG S Sbjct: 293 AASLVPQMLAEAGIS 307 >gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925] gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium botulinum BKT015925] Length = 343 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 143/264 (54%), Gaps = 19/264 (7%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 +L + + D+ F V+HG +GEDG +Q + +LL+IP G+++SA+ MDK+ +K V+ + G Sbjct: 77 ILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMDKVYTKYVLENFG 136 Query: 105 VPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + ++V + ++ + IKP GSS+GI + + L Sbjct: 137 IKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISKAHNREELEKGLS 196 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELKYSSLN 210 ++ ++ ++L+E ++ E+ V+G+ D E A VP ++FY YE KYS+ Sbjct: 197 EALKFDR--KVLVETALNAREIEVAVLGN---DEPEAATPGEIVPANEFYDYEAKYSNAE 251 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 S +LPA + ++V+ LA ++ + C G+SR DFL D + +V+ EIN PG T Sbjct: 252 SKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNEINTIPGFTK 311 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S++P+M G S+ L+ ++E Sbjct: 312 ISMYPKMWQAEGKSYGNLISEIIE 335 >gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] Length = 353 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 15/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------ 105 D+ F VLHG +GEDG VQ +LEL +IPY G+LASA+SMDK+ +K +V + GV Sbjct: 95 DVVFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAVSMDKLFTKIIVDNLGVRQAEYE 154 Query: 106 PVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 PV L + T + S P IKP GSS G+ + + + LL+++ H Sbjct: 155 PVTREQLAHMEAVTARIEGHFSYPVFIKPSNAGSSRGVSKAENREELEAGLLEAA--RHD 212 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219 ++L+E+ + G E+ C V G + V V + ++FY +E KY + S V ++ Sbjct: 213 RKILVEEAIVGREVECAVFGGGAEAVVASGVGEILAAAEFYDFEAKYYNEESRTVTDPEL 272 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D + +++ A QA+ G++R DF F +V + EIN PG T +S++P + Sbjct: 273 PGDAAERIRQTAVSVFQAVDGYGLARVDF-FVTGDGEVVFNEINTLPGFTAISMYPMLWE 331 Query: 280 YAGYSFRELL 289 G S EL+ Sbjct: 332 ARGVSKEELV 341 >gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum JIP02/86] gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 328 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 161/316 (50%), Gaps = 33/316 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AV+MGG S E +SL SG+ + L+ + + + ++ + D S Sbjct: 3 VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D+A N +HG GEDG +Q+ EL++IPYT SAL+ +K + V++ Sbjct: 63 FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122 Query: 102 SCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P SI + + + + + + P+ +KP + GSSLG V K D L+ Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLG--VSKVDALDQLEKALE 180 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ +++LIE Y++G E++ GV+ L +TEI + ++DF+ YE KY S Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEI-LSQNDFFDYEAKYLG-KSEE 238 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + V A + ++G G SR+DF+ ++ ++EIN PG++P SI Sbjct: 239 ITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSI 296 Query: 274 FPEMAAYAGYSFRELL 289 FP+ A +A ++L Sbjct: 297 FPQQAMFAKMDMPQML 312 >gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] Length = 347 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ ++R A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5] gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 364 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 155/296 (52%), Gaps = 30/296 (10%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 S RE+++ GKA SQ V+ S +L H+ D+ F ++HG GEDG +Q Sbjct: 72 SNRELAVVPGKA------------SQQLVETSSQELLGHV--DVIFPIVHGTLGEDGCLQ 117 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHL 123 +L + ++P+ S +L SA+ MDK SK+++ G+ V P I + R T ++ Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARET 177 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP GSS+G+ + + + + ++H ++L+E V G E+ C V+G Sbjct: 178 LGLPLFVKPANQGSSVGVSKVDNEAEYEAAVELALGFDH--KVLVESAVRGREIECAVLG 235 Query: 184 D---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V FYSY+ KY + VL PA I ++ + ++ LA A Q +G Sbjct: 236 NDQPIASGCGEIVVSNG-FYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLG 294 Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G++R D FL D +V EIN PG T +S++P++ G S+ EL+ ++E Sbjct: 295 CSGLARVDVFLTD--EGEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIE 348 >gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 364 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 370 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 19/254 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF +LHG FGEDG +Q LE+ +PY G+ ASA MDK K V+ S G+ V P + Sbjct: 105 DVAFPLLHGPFGEDGTIQGFLEMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYV 164 Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 LV R+ + +++ P +KP + GSSLGI + + L+ +++ Sbjct: 165 LVAPRRWRTEKGQILAEIAQKLTFPVFVKPARAGSSLGIGKVLEPGG--LERAIAAAQKV 222 Query: 163 GDQLLIEQYVDGIELTCGVM---GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-L 215 ++++EQ V G E+ C V+ GDA+ + EI + +D+Y +E KY H+ + Sbjct: 223 DPKVIVEQGVKGREVECAVLGGRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAV 282 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + D+ E +R+A +A C G++R DF ++ E N PG T S++P Sbjct: 283 PAPVEADVEAEARRIAARVFEAFDCEGMTRVDFFLTD-DGEILVNEHNTIPGFTEFSMYP 341 Query: 276 EMAAYAGYSFRELL 289 + + G + EL+ Sbjct: 342 ILWEHTGIPYSELI 355 >gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] Length = 366 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG SSE EVSL S K A++ F V + +D+ Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 41 ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------LISPPYVI 130 P+ S +L SA+SMDK +K+++ G+ V P + + R ++H + P I Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANR-ARHPYDSVTAELGLPLFI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188 KP GSS+G+ ++ + + ++H ++L+E + G E+ C V+G+ Sbjct: 185 KPANQGSSVGVSKVRNQAEFEHAVELAFRYDH--KVLVESAIVGREIECAVLGNDYPKAS 242 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V V +FYSY+ KY + + V +PA + D+++ ++ +A A QA+ C+G++R D Sbjct: 243 VCGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P ++V E+N PG T +S++P++ +G + L+ ++E Sbjct: 303 VFLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIE 348 >gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 364 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 370 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354 >gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401] gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401] Length = 346 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 140/255 (54%), Gaps = 18/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + +P+ S +LASA MDK +K+++ G+ + P I Sbjct: 82 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 141 Query: 112 LVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R ++H IS P +KP GSS+G+ + ++ + + + ++H Sbjct: 142 TLTRA---NRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 198 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKI 219 ++++EQ + G E+ C V+G+ + + V SDFY+Y+ KY + V+PA I Sbjct: 199 --KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 256 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +I +++ +A A+Q +GC G++R D P +V EIN PG T +S++P++ Sbjct: 257 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQ 315 Query: 280 YAGYSFRELLLWMVE 294 +G + +L+ ++E Sbjct: 316 ASGLGYTDLITRLIE 330 >gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] Length = 390 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 136/263 (51%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL +PY +G+LASA+ MDK K+V S G+PV P Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184 Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ R ++ P +KP + GSS+GI K + LD + Sbjct: 185 VIRPREWQQEPSAARRRIVEFAAEHGWPLFVKPARAGSSIGI--TKVEDPADLDEAIEEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++++E + G E+ CGV+ ASL V FY +E KY ++ + Sbjct: 243 RRHDPKVIVEALLRGREIECGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKYID-SAAGI 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA + + + VQ LA A A C G+ R+D FL D S + EIN PG TP+S+ Sbjct: 302 VPAPLTEEQTRRVQELAVAAFDAASCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M +G S+ EL+ +++ A Sbjct: 360 YPRMWQESGVSYPELVDRLLQAA 382 >gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 375 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 138/260 (53%), Gaps = 17/260 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162 Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF +D +++ S +KP GSS+G+ + ++ + L + ++ Sbjct: 163 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY ST +P Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 280 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P I + V++ A QA C G++R D + +V E+N PG T +S++P+ Sbjct: 281 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 340 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G + +L+ +++ A Sbjct: 341 LFEEIGIPYTDLITKLIDYA 360 >gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] Length = 360 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLV------ 45 + ++ GG SSE EVS+ SG +A++ F V I D S ++ Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66 Query: 46 ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LA+L + D+ F ++HGN GEDG +Q + +L+ P+ ILA+A+ Sbjct: 67 VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I V R D ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L ++ + D++L+E+ V G E+ V+G+ + V +I Sbjct: 187 VGVSHVTNADEYKKAL--DEAFKYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +YSYE KY NST L PA++P I ++V+ A +QA C G++R D + P Sbjct: 245 AGSWYSYENKYDD-NSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 DGKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIE 343 >gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 370 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354 >gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 347 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 103/332 (31%), Positives = 161/332 (48%), Gaps = 45/332 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K+V+ S G+ P + L ++ + L P + KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFT-KPSNMGSSVGI--SK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y Sbjct: 184 SENKEELHQALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDKG-EVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T S++P + G S+ EL+ +VE Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVE 333 >gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] Length = 366 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 170/349 (48%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A+L GG SSE E+S+ S ++ A+AL+ +K+ I + ++ + A Sbjct: 6 VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65 Query: 48 ----------HL---------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 HL K D+AF VLHG +GEDG VQ +LE+ + Sbjct: 66 AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------P 127 + Y SG+LASA++MDK +K G+ V + L F + +++ P Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + + +++ + LIE+ ++ E+ V+G+ Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDR--KFLIEKAINAREMEVAVLGNDEP 243 Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + VP ++FY Y+ KY +S ++PA+I +++ A A A C G++R Sbjct: 244 IASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL + + +++ EIN PG T +S++P++ A G S+ EL+ ++E Sbjct: 304 VDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIE 352 >gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355] Length = 353 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 43/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+GC G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G ++ +L+ +V Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLV 338 >gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] Length = 361 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 89 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148 Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF +D +++ S +KP GSS+G+ + ++ + L + ++ Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY ST +P Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P I + V++ A QA C G++R D + +V E+N PG T +S++P+ Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326 Query: 277 MAAYAGYSFRELLLWMVE 294 + G + +L+ +++ Sbjct: 327 LFEEIGIPYTDLITKLID 344 >gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 364 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S FY+Y+ KY N V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4] gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4] Length = 368 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 20/272 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D G +LA + D+ F VLHG +GEDG +Q +LEL +PY G+LASA MDK +K+ Sbjct: 95 DGEAGKILASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKK 152 Query: 99 VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++++ G+P+ +++ T + + + P +KP +GGSS+GI + + LD Sbjct: 153 LLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVFVKPARGGSSIGITRVA--EWAALDD 210 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKS-----DFYSYEL 204 + + H ++++E + G E+ CGV+ GD V EI +P+ FY ++ Sbjct: 211 AIAHARRHDPKVIVESGIAGREVECGVLEFPDGDVRASVIAEIRMPEGADDDEAFYDFDS 270 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAK+ + E++ LA A A+ C+G++R DF + EIN Sbjct: 271 KYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALDCQGLARVDFFVTEDGPVIN--EINT 328 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P M G + L+ +V+ A Sbjct: 329 MPGFTSISMYPRMWDAVGVDYGTLVSTLVDTA 360 >gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 364 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 354 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 17/262 (6%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 ++ D F +LHG GEDG +Q + EL IPY G ++SA+ MDK + V+ G Sbjct: 92 TFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIPYVGCGHMSSAICMDKEMAHIVMEHAG 151 Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + P + V D++ + P IKP GSS GI ++ + Sbjct: 152 ISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFIKPANAGSSFGIHKMESFDGFEEAMKD 211 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211 + + ++++E ++G E+ C VMG+ S+D E A P F+ YE KY ++S Sbjct: 212 AFYHDGKGKVILETTIEGFEIGCAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA+I +++ + + +A A+ A+ C+G++R D P K+ E+N PG T Sbjct: 269 HIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVDMFVTP-DEKIILNEVNTIPGFTDT 327 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S +P M AG F EL+ +V Sbjct: 328 SRYPTMMKEAGIPFPELIDRLV 349 >gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026] Length = 361 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 89 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148 Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF +D +++ S +KP GSS+G+ + ++ + L + ++ Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY ST +P Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P I + V++ A QA C G++R D + +V E+N PG T +S++P+ Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326 Query: 277 MAAYAGYSFRELLLWMVE 294 + G + +L+ +++ Sbjct: 327 LFEEIGIPYTDLITKLID 344 >gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] Length = 361 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A++MDK +K + GVPV I Sbjct: 89 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148 Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V RF +D +++ S +KP GSS+G+ + ++ + L + ++ Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216 + D++L+E+ V G E+ V+G+ V +I K FY+YE KY ST +P Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AK+P I + V++ A QA C G++R D + +V E+N PG T +S++P+ Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326 Query: 277 MAAYAGYSFRELLLWMVE 294 + G + +L+ +++ Sbjct: 327 LFEEIGIPYTDLITKLID 344 >gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30] gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10] gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus] gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30] gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10] Length = 350 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ SAL M+K Q ++ GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDTISLVDGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L ++++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AVGLSYQELL 338 >gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 333 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A++ GG SSE +VSL S + S + + V +DV DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 S G+ V PS+L+ R D + I P +KP GSS G+ +K DQ P Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209 + ++ D ++IE +++G E++ G V TE+ V ++F+ Y+ KY+ Sbjct: 188 RV---AFMESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEV-VTTNEFFDYDAKYNG- 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQP 266 + PA+I + K+V + + C GI R D++ D + K+ LEIN P Sbjct: 243 QVQEITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTP 302 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ AG +++L +VE+ Sbjct: 303 GMTHTSFIPQQVHAAGLDIKDVLTDIVEN 331 >gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 368 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 19/273 (6%) Query: 40 RSVGLVLAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 R V + A ++PDL+ F VLHG FGEDG VQ E+ ++ Y GILASA +MDK Sbjct: 83 RLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDKD 142 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSI 150 +K+++ G+ V S+ V R + S I+ P+ KP + GSS G+ +K Sbjct: 143 VAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPARQGSSFGVSKVKDRDG- 201 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE----IAVPKSDFYSYEL 204 + ++ + ++LIE++V+G E+ C V+ D SL V+ I K FY+YE Sbjct: 202 -FEQAVETALRYDSKVLIEEFVEGREIECSVLQRADGSLTVSLPGEIIPAGKHGFYTYEA 260 Query: 205 KYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY + V +PA +P + + + +A A +A+GC ++R DF F + E+N Sbjct: 261 KYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVDF-FLRADGSLLVNEVN 319 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++ + A G + +++ ++E A Sbjct: 320 TLPGFTDISMYAKALAAIGIGYSQVIDVLIEHA 352 >gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] Length = 368 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 24/265 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG EDG +Q +LEL IPY G+ ASA MDK +K V+ + G+P+ + Sbjct: 104 DVVFPVMHGTHAEDGTIQGLLELSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQV 163 Query: 112 LVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ T + + P +KP +GGSS+GI K ++ LD + + ++++ Sbjct: 164 VLRPGTATLSPADRDRLGLPLFVKPARGGSSIGI--TKVSRAADLDAAIAEARRFDEKVI 221 Query: 168 IEQYVDGIELTCGVMG--DASLDVT---EIAVPKSD-----------FYSYELKYSSLNS 211 +E + G E+ CGV+ D ++ + E+ +P FY ++ KY + Sbjct: 222 VEAAIVGREIECGVLEYPDGRVEASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVT 281 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T LPA +P + ++++ LA A A+ RG+SR DF + E+N PG TP+ Sbjct: 282 TFDLPADLPAEQTEQLRTLAVEAFHALDARGLSRVDFFV--TAEGPVINEVNTMPGFTPI 339 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+M A G + LL ++ A Sbjct: 340 SMYPQMWAATGVDYESLLDTLIRTA 364 >gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 348 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 160/333 (48%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KAEGEAALRTAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I DI +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYTDLVEKLVE 334 >gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris] Length = 357 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 157/340 (46%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDRS 41 + +L GG S+E VSL + KA AL+ F + I DV Sbjct: 5 LCLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKEL 64 Query: 42 VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + P D+ F +LHG GEDG VQ +LELL +PY +G+L Sbjct: 65 QFNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P R T + + I P +KP G Sbjct: 125 ASSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAV 194 SS+GI + ++ ++ +++IE+ V E+ GV+G+ V V Sbjct: 185 SSVGISKCSSRDELAKAFQEAFQFDR--KIIIEEGVKAREIEIGVLGNDQPQCSVPGEIV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA++ D+ +++ +A + +A+ C G+ R+DF Sbjct: 243 PKTDFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTEDG 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R ++ E+N PG TP S+FP + + G + L+ +V+ Sbjct: 303 R-IYMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVD 341 >gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 362 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 168/340 (49%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32 + ++ GG SSE EVS++S A LE+ G+ Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 33 VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + D ++ L+ +P D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 +MDK +K + GVPV + + R+ + S L + +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V I Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + E+N PG T +S++P++ G S+ +L+ ++ Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLI 344 >gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 400 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 20/260 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LEL ++ Y +G+LASA+ MDK K V++ G+PV P Sbjct: 134 DVVFPLLHGPFGEDGTLQGMLELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYT 193 Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V + D++ + + P +KP + GSSLGI + +P + ++ H Sbjct: 194 VVPPGEWDRDAEAVTARVAGLGLPVFVKPARAGSSLGISKVDDLADLPAAVAEAR--RHD 251 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHVL 215 ++++E + G E+ C V+G + ++P FY +E KY S S + Sbjct: 252 PKVIVEAGIVGREIECAVLGGRRGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELT 311 Query: 216 -PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA + ++ EVQ +A +A+ G+SR D +F + +V EIN PG TP S++ Sbjct: 312 CPADLSPELVAEVQDVAVRTFEAVSGEGLSRVD-VFVTEAGEVVVNEINTMPGFTPFSMY 370 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P M +G + EL+ +VE Sbjct: 371 PRMWDRSGLPYAELITELVE 390 >gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 326 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 156/323 (48%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 VL K D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E ++DG E+TCG V TE+ V ++++ YE KY+ S Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDRSVVFPITEV-VSHNEYFDYEAKYNGA-SD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+ D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] Length = 360 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLSS- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338 >gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp Length = 307 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSE++VS+ +G + L+ +++ I ++ L+ D A LHG Sbjct: 6 IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 +GEDG VQ LE L IPY+ S L+S + DK SK+++ G+ I + + Sbjct: 66 KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P V+KP GGSS+G+ IV KD+ I L W+ +++IE+Y+ G E Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISX-LETVFEWDS--EVVIEKYIKGEE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++ Sbjct: 183 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 240 Query: 237 AIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C +R D + D + + E+N PG T S+ P+ A AG + +LL ++E Sbjct: 241 ALKCSVYARVDXXVKDGIP---YVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIET 297 Query: 296 ASCLR 300 + +R Sbjct: 298 SLRVR 302 >gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] Length = 288 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 9/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S E+E++L KA +L+ G+ V +++D+ + L P+ F + HG Sbjct: 3 ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPY S SA+ MDK SKQ+ + P + D Sbjct: 63 TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIK-TPKWKAYK-PKDV 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P + KP GSS G+ ++ D+S L + + D+L++E++++G ++T G Sbjct: 121 IDWSIFPCIAKPASAGSSFGLFKVEDDKS--LKEAAQNIFKIDDKLIVEEFIEGKDMTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 L+ EI +PK Y +E KY+ S ++ I K+++ +A Sbjct: 179 YFKGFILEPIEI-IPKKGIYDFESKYTKGMSEYIFVE--DESIAKKLKEIASKLVDIFEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++R DF + V+ LEIN PG+T +S+ P AG SF +++ +V Sbjct: 236 KDMARIDFRVK--GKDVYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLV 286 >gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 350 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 51/330 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---------------------------EDAGFKV 33 +AV+ GG SSE EVS S +L ED ++ Sbjct: 5 IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64 Query: 34 SQI------DVDRSVGLVLA----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 S++ D + ++LA L+P D+ F VLHG GEDG +Q + E+ +IPY Sbjct: 65 SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + + R + ++ +S P +KP + Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+G V K + L S + H +L+E+ + G E+ C V+G + + + Sbjct: 185 AGSSVG--VSKAEDREALSKALSKAAEHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY Y+ KY++ S ++ +P + +E+++ A +A+ G+SR DF F Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDF-FIA 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + +V + EIN PG T +S++P + A G Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQG 331 >gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1] Length = 390 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 137/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LEL +PY +G+LASA+ MDK K+V S G+PV P Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + + P +KP + GSS+GI K D L+ + Sbjct: 185 VIRPREWEKDPAAARKKIVEFAGEHGWPVFVKPARAGSSIGI--SKVDDISGLEEAIEEA 242 Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 H ++++E + G E+ CGV+ AS+ V DFY +E KY ++ V Sbjct: 243 RRHDPKIVVEALLRGREIECGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYID-SADGV 301 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA + + + V+ LA A +A C G+ R+D FL D S + EIN PG TP+S+ Sbjct: 302 VPAPLTEEQTERVRELAVRAFEAASCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M +G S+ EL+ +++ A Sbjct: 360 YPRMWQESGVSYPELVDRLIQAA 382 >gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] Length = 286 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 150/287 (52%), Gaps = 11/287 (3%) Query: 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 +G+ + L+ +++ I + LV D+A LHG +GEDG +Q LE L + Sbjct: 2 TGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLGV 61 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNR--FTMDSQHLISPPYVIKPLK 134 PYT SG+L+S + MDK SK+++ G+ I L NR +D + P V+KP Sbjct: 62 PYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPNS 121 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ +++ L W+ +++IE+Y+ G E+TC ++ L + I Sbjct: 122 GGSSVGVKIVYDKETLLASLEDVFKWDA--EIVIEKYIKGEEITCSILDGKLLPIISIQ- 178 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPL 253 ++F+ Y KY + + + ++PL Y+ V A ++ + C +R D + D + Sbjct: 179 HTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMIKDGI 237 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + +E+N PGMT S+ P+ A AG S+ +LL ++E + +R Sbjct: 238 P---YVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281 >gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1] gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1] Length = 368 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 20/272 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D G +LA + D+ F VLHG +GEDG +Q +LEL +PY G+LASA MDK +K+ Sbjct: 95 DGEAGKILASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKK 152 Query: 99 VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++++ G+P+ +++ T + + + P +KP +GGSS+GI + + LD Sbjct: 153 LLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVFVKPARGGSSIGITRVA--EWAALDD 210 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKS-----DFYSYEL 204 + + H ++++E + G E+ CGV+ GD V EI +P+ FY ++ Sbjct: 211 AIAHARLHDPKVIVESGIIGREVECGVLEFPDGDVRASVIAEIRMPEGAGDDEAFYDFDS 270 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAK+ + E++ LA A A+ C+G++R DF + EIN Sbjct: 271 KYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALDCQGLARVDFFVTEDGPVIN--EINT 328 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P M G + L+ +V+ A Sbjct: 329 MPGFTSISMYPRMWGAVGVDYGTLVSTLVDTA 360 >gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6] gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6] Length = 347 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +VE Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVE 333 >gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] Length = 374 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 20/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG FGEDG +Q +LEL E+PY G+ ASA+ MDK K S G+ V P Sbjct: 108 DVVFPLIHGPFGEDGTIQGLLELAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 167 Query: 112 LVN--RFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V ++T + + + P +KP + GSS GI + K + + + ++ H Sbjct: 168 VVTDRQWTHEREESLKRITALGYPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHD 225 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNSTHV- 214 ++++E + G E+ CGV+ D+ EI V D FY ++ KY S +S Sbjct: 226 AKIIVEAGIVGREIECGVLDGHHGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTR 285 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA +P D+ + ++ LA A A+ G+SR+DF + P R V E+N PG TP+S++ Sbjct: 286 CPADLPKDMQERLRALAVKAFLALDGEGLSRADFFYTPDGRLVIN-EVNTMPGFTPISMY 344 Query: 275 PEMAAYAGYSFRELL 289 M G S+ EL+ Sbjct: 345 KTMWENTGISYTELI 359 >gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9215] gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215] Length = 355 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 166/345 (48%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGK----ACASALEDAGFKVSQ---------IDVDRSVGLVLA 47 + ++ GG S+E EVS+SS K A S + FKV +D D S ++ Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +K D+ F +LHG GEDG + +L+ P Sbjct: 69 EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + +D + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ + ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQKIDS--RILVEEGLEVREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I K SD+Y Y+ KY S N+ ++PA+I I KE++++A + +A+ G +R DF Sbjct: 247 IGEIKYESDWYDYDSKYYS-NNKIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] Length = 362 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 163/346 (47%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E EVSL S A S L+ + + + + + Sbjct: 7 IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66 Query: 42 --------------------VGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 VG L P D+ F VLHG +GEDG +Q + EL PY Sbjct: 67 ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKP 132 G+ ASA+ MDK K ++ +P+ P +LV R + + ++ P +KP Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190 GSS+G+ ++ + L +++ H ++++EQ + E+ V+G+ ++V+ Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAA--RHDRRIVVEQGISAREIEISVLGNEHVEVSIP 244 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +P ++Y Y KY + S ++PA + +VQ LA A QAI G++R DFL Sbjct: 245 GEI-IPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFL 303 Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + WL E+N PG TP+S++ +M +G + +LL ++E Sbjct: 304 LD-REQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIE 348 >gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599] gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599] Length = 350 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 14/292 (4%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 G I S R S + C A +V I + + + K D+ F +LHG GED Sbjct: 54 GNIESIRNDSWHQSEKCVPAFLSPCRQVRGIVTQENGAMTVT--KVDVVFPILHGKNGED 111 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123 G VQ +LEL IP+ L+SA+ MDK + + G+ S+ V N Q Sbjct: 112 GTVQGLLELAGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAA 171 Query: 124 ISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P P +KP K GSS+GI K L ++ H D+++IE+ + G E+ C Sbjct: 172 TEPLGFPLYVKPAKAGSSIGI--TKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCA 229 Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 V+G+ + V E+ + F+ Y KY SL + H+ +PA+I ++ ++++ A +Q Sbjct: 230 VLGNREVIVGEVDEIELLQGFFDYTEKY-SLETAHIHVPARIDEELAHKIKQTATHLYQV 288 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 GCRG +R D P VF E+N PG T S +P M AG S++ELL Sbjct: 289 FGCRGFARVDMFVTPDGDIVFN-EVNTIPGFTSKSRYPSMLRAAGISYKELL 339 >gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] Length = 367 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+E EVSL S K + L+ + F V I ++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65 Query: 40 --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 RS+ +V L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + D + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLD 188 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFNAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEHPLASP 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI + S FY+Y KY N V+ PA + DI +++ +A A+QA+ C G+SR D Sbjct: 244 CGEIVLHDS-FYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 303 -VFLTENNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348 >gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 366 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 149/289 (51%), Gaps = 22/289 (7%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78 +ALE+ + S+ D ++GL+ + L D+ F +LHG GEDG +Q + E+ ++P Sbjct: 64 AALEELKLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLP 123 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISP-------PYV 129 Y +G+LASA MDK+ K++ + G+ C + + S LI P Sbjct: 124 YVGAGVLASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDAS- 186 +KP GSS+GI + + +LL S + + + ++++E++VD E+ GV+G+ Sbjct: 184 VKPANLGSSVGISKARNRE----ELLSSVALAFRYDLKVIVEEFVDAREVEVGVLGNDEP 239 Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V V ++Y Y+ KY S ++PA I ++ + ++ LA A +AI G+ R Sbjct: 240 LASVPGEIVSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCR 299 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +DF K++ E+N PG TP S++P + G ++ LL ++E Sbjct: 300 ADFFVRKSDHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIE 348 >gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 364 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ + + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIE 348 >gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 356 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 16/257 (6%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K + F VLHG GEDG +Q LE + +PY +G+LASA +MDK+ +K ++ + G+P P Sbjct: 89 KDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTGVLASATAMDKIMTKYLLQTVGIPQTP 148 Query: 110 --SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +L N + DS+ L P +KP GSS+GI ++ + + L ++ Sbjct: 149 YVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPANLGSSVGISKVENREELQKAL--ELAY 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++++EQ ++ E+ ++G+ + T E+ V DFY Y+ KY + +PA Sbjct: 207 KYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKNVDFYDYQAKYVDNQISMKIPA 265 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++P ++ ++ Q A A++ + G+SR DF F ++F E+N PG T S++P + Sbjct: 266 ELPAEVCRQAQEYAKKAYKTLDGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPSL 324 Query: 278 AAYAGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 325 WENMGLKYSDLIEELIQ 341 >gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98] Length = 362 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47 + +L GG S+E +VSL + A AL F++ I + +R G V + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 65 Query: 48 -------HLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + P D+ F +LHG GEDG VQ +LEL+ IPY Sbjct: 66 QMSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LASA MDK+ K + + G+ R + + + P +KP Sbjct: 126 NGVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G D V Sbjct: 186 ANLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDDPKCSVV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK +FY Y+ KY ++ ++PA+I + +QR A A QA+ G++R+DF F Sbjct: 244 GEIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G S+ EL+ Sbjct: 303 LTKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELI 341 >gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 368 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 165/352 (46%), Gaps = 67/352 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65 Query: 41 ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 +V L+ LA L D+ F ++HG GEDG +Q +L + Sbjct: 66 LISLNHSNKNVALIPGQEQQQLIAADNATALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 IP+ SG++ SA+SMDK +K+++ G+ + P I + R D+ + P Sbjct: 124 NIPFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----A 185 IKP GSS+G+ ++ + + ++H ++L+E + G E+ C V+G+ A Sbjct: 184 IKPANQGSSVGVSKVRNAAEYQQAVTLAFDFDH--KVLVESAIVGREIECAVLGNDNPRA 241 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 SL E+ V +FYSY+ KY +N T V+PA I ++ +A A + + CRG Sbjct: 242 SL-CGEVVV-SDEFYSYDTKY--INETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRG 297 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++R D P V EIN PG T ++++P++ G EL+ ++E Sbjct: 298 LARVDVFLTP-ENTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIE 348 >gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 366 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] Length = 385 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 23/263 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY SG+LASA+ DK K+V +S G+ V P + Sbjct: 120 DVVFPVLHGPYGEDGTLQGMLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179 Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ + +D P +KP + GSS+GI K D LD + + Sbjct: 180 VIRPREWQLDEAAARKKIIDLAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIAEA 237 Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213 H ++L+E + G E+ CGV+ G + EI P++ +Y ++ KY ++ST Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPETHAYYDFDAKY--IDSTPG 295 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA + + EV+RLA A A C G+ R+DF V EIN PG TP+S+ Sbjct: 296 IVPAPLTPEETAEVRRLAVDAFDAASCEGLVRADFFLTEDGEFVI-NEINTLPGFTPISM 354 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P M +G + EL+ +++ A Sbjct: 355 YPAMWQASGIEYPELVDRLIQAA 377 >gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 359 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 39/325 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAHLK 50 +AV+ GG S E E+S S A L + +V I +D+S + +K Sbjct: 11 VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70 Query: 51 P--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D+ ++VLHG +GEDG +Q + E+ ++PY + ASA++MDK+ + Sbjct: 71 NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130 Query: 97 KQVVSSCGVPVCPS--ILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148 K V G+ +L + D + + P +KP GSS+GI ++ Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELK 205 + + + +++ +L+IE+ + G E+ V G+ + + EI P+++FY + K Sbjct: 191 KLKKAIEDAFQYDY--RLIIEENIIGKEVEVAVFGNGPYEASVAGEIR-PRAEFYDVDAK 247 Query: 206 YSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 Y S T ++PA I + K +Q A +A +AI C+GI R D S ++F E+N Sbjct: 248 YHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNT 307 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289 PG T +S++P++ +G S +ELL Sbjct: 308 MPGFTEISMYPKLWEVSGISNKELL 332 >gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] Length = 358 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK----MRSKQVVSSCGVPV 107 D F VLHG GEDGL+Q +LEL+ I Y +++SA+SMDK + K+ C + Sbjct: 100 DCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDVMSSAMSMDKEIMHILCKEAKIPCADYI 159 Query: 108 CPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 C T + Q I P++IKP GSS G+ + + + ++ ++ Sbjct: 160 CLYANRENPTFEQIQEKIELPWIIKPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKI 219 Query: 167 LIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 L+E+ + G E+ C VMG+ S+D EI F+ +E KY + PA+I Sbjct: 220 LVEKVIKGFEIGCAVMGNEEIFTGSIDEIEIT---GGFFDFEGKYEMKGAAIYCPARIDE 276 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +KE Q LA + A+ C G++R D +F ++V E+N PG+T S +P M A Sbjct: 277 KTFKEAQELARKTYIAMNCCGMARVD-MFVTEDKEVILNELNTIPGLTATSRYPSMMKVA 335 Query: 282 GYSFRELLLWMVE 294 G F +L+ ++E Sbjct: 336 GIEFADLIDKLIE 348 >gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 320 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 154/309 (49%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S ER SL+SGK A AL GF ID + K D+A LHG Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEPQAIESIQ-KIDVALIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG------VPVCPSILVN 114 GEDG +Q +LE+L +PYT SG+LASA+ M K KQ++SS G + + PS+ + Sbjct: 70 PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQL--LIEQY 171 + + + P IKP GG SLG + + P D + N D L L+E+Y Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRS----PSDFAHMLADLNRQDYLEYLVEEY 185 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + GV+ + +L V ++ + +FY Y K+ P+ +P D+ + + Sbjct: 186 VPGRPCSVGVIETSGRPEALPVHDVETDR-EFYDYAAKHDPSKRIENCPSILPKDVTERL 244 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q A H G G+SR DF+ D R V LEIN PG++ + MA AG S+ Sbjct: 245 QEEAVRIHMLTGAHGVSRVDFIVDDNGRSVI-LEINTVPGLSDMGNLATMAKAAGMSYPA 303 Query: 288 LLLWMVEDA 296 L+ +++ A Sbjct: 304 LVTAVLKTA 312 >gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4] gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae TIGR4] gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY N T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333 >gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 354 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 +K D+ F VLHG FGEDG VQ +LEL IPY G+LASA+SMDK+ +K VV GV Sbjct: 92 VKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKIVVDDLGVRQA 151 Query: 109 PSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + V R + + + P +KP GSS G V + D L+ + Sbjct: 152 AYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNAGSSKG--VARADSREELEAALYEAA 209 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLP 216 H ++L+E+ + G E+ C V G + V V + ++FY ++ KY + +S V+ Sbjct: 210 KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVGEILAAAEFYDFDAKYYNSDSRTVVN 269 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 ++P D V+ A +A+ G++R DF VF EIN PG T +S++P Sbjct: 270 PELPGDAANTVREAAKAIFRAVDGYGLARVDFFVKDDGTVVF-NEINTLPGFTAISMYPM 328 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + AG S +L+ +V+ A Sbjct: 329 LWEAAGVSKDQLVDRLVDHA 348 >gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 347 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6] gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39] gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39] Length = 347 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333 >gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 364 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348 >gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840] gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840] Length = 366 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 169/343 (49%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ ++P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 386 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 144/273 (52%), Gaps = 24/273 (8%) Query: 37 DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 ++ R++G V D+ F +LHG FGEDG +Q +LE+ + Y SG+LASA+ MDK Sbjct: 113 EIPRALGEV------DVVFPLLHGPFGEDGTIQGLLEMAGVRYVGSGVLASAIGMDKAYM 166 Query: 97 KQVVSSCGVPVCPSILV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148 K V+ + G+PV P ++V + +D ++ P +KP + GSS GI K Sbjct: 167 KLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVFVKPARAGSSQGI--TKVHD 224 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDA----SLDVTEIAVPKSDFYS 201 + L+ ++ H ++L+E + G E+ C V +GD+ S+ + +FY Sbjct: 225 AAGLEEAIEAAREHDPKVLVEAAIPGREVECAVLESLGDSPPEASVVGEVVVAEGHEFYD 284 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +E KY PA +P + + V+ LA A +A+GC G++R DF + P S ++ E Sbjct: 285 FEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEGLARVDFFYTP-SGELIVNE 343 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 IN PG T S+ P++ A G + +L+ +++ Sbjct: 344 INTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQ 376 >gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] Length = 357 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 159/341 (46%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF------------------------KVSQI 36 + +L GG S+E +VS+ + A AL+ F V Q+ Sbjct: 5 LGLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQL 64 Query: 37 DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + + + A L P D+ F +LHG GEDG VQ +LELL +PY +G+L Sbjct: 65 EFSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P + R + + P +KP G Sbjct: 125 ASSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAV 194 SS+GI + + ++ ++ ++++E+ V E+ GV+G + V V Sbjct: 185 SSVGISKCTNREELAAAFEEAFQFDR--KIIVEEGVTAREIELGVLGNDEPECSVAGEIV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK DFY Y+ KY ++ ++PA+I + Y + ++ A +A+ C G+ R+DF L+ Sbjct: 243 PKKDFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFF---LT 299 Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R KV E+N PG TP S+FP + + G + +L+ +V Sbjct: 300 RDGKVMINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLV 340 >gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] Length = 347 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G DA + V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDYDA 244 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+N Sbjct: 245 KYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNELNT 303 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 304 MPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM] Length = 318 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 163/321 (50%), Gaps = 35/321 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG S E +VSL SG+ +L+ + V ++ V D SV L Sbjct: 1 MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60 Query: 45 VLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V++ Sbjct: 61 PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120 Query: 104 GVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 G+P S + + D +I+ P +KP + GSSLGI +K+ L + Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL--EKA 178 Query: 160 WNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + D++L+E ++DG+E++ GV+ G+ L +TEI +P+++F+ YE KY S ++ Sbjct: 179 FLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-SQEII 236 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P SI P Sbjct: 237 PARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILP 294 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + A G S +L VE A Sbjct: 295 QQARIYGISITDLCGNEVEKA 315 >gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_07A21] Length = 363 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 168/347 (48%), Gaps = 59/347 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------SVGLVLAHLK 50 + +L GG S+E EVS+ S ++ +A++ + V +D+ S L L+ Sbjct: 6 VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65 Query: 51 PD----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 PD + F +LHG +GEDG VQ +LEL + Y + Sbjct: 66 PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLISPPYVIK 131 G+ ASA+ MDK+ ++ + ++ G+P ++ R ++ +H P +K Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEH--DYPLFVK 183 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD---ASL 187 P GSS+GI Q + L +S ++ +L+IE+ V+ EL C V+G+ + Sbjct: 184 PANLGSSVGISKAHDRQGLQAGLELASQYD--TKLIIERSVENARELECAVLGNEYPKAS 241 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V EI +P ++FY Y KY S V+PA + + ++ LA +AI C G++R D Sbjct: 242 GVGEI-IPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVD 300 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F P V EIN PG TP+S++P++ A AG ++ +L+ +++ Sbjct: 301 FFMRP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346 >gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM] gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM] gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 360 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL--------------------EDAGFKV-----SQ 35 + ++ GG SSE EVS+ SG A+ E+ FKV Q Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66 Query: 36 IDVDRSVGLV--LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ V + + LK D+ F ++HGN GEDG++Q + L+ P+ +LA+A Sbjct: 67 VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF D ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVNHVT--NAEEYAAALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY NST L PA +P DI V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ +++ Sbjct: 303 DGKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343 >gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 348 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 45/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ + V Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D + + + F VLHG GEDG VQ LE+L++PY IL+S+++ Sbjct: 66 MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 MDK+ +K+V+ S G+P P + V + T+ + L P + KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFT-KPSNMGSSVGI-- 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 K + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY Sbjct: 183 SKAENQAELRKSLELAFKYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEV-VKDVAFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY T +PA+IP ++ ++ A LA +AIG +G+SR DF + ++ Sbjct: 242 DYEAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G ++ +L+ +VE Sbjct: 301 ELNTMPGFTQWSMYPLLWDNMGLAYPDLIERLVE 334 >gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] Length = 366 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37 + ++ GG SSE EVS+ SG+ A++ + GF S D Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72 Query: 38 ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V ++ +P D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138 +MDK +K + GVPV I + RF + +S YV +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 193 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KY+ NST L PA +P +I + V+ A + A C G++R D + Sbjct: 251 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLSS- 308 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 KV + E+N PG T +S++P++ G S+ EL+ Sbjct: 309 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 344 >gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] Length = 354 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F VLHG GEDG +Q + EL IPY G ++S++ MDK + V+ + VP P + Sbjct: 99 DCIFPVLHGKNGEDGTIQGLFELSGIPYVGCGHMSSSICMDKEMTHIVLENAKVPCAPYL 158 Query: 112 LV-NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V MD + + P IKP GSS GI + + L + + Sbjct: 159 CVYEEKDMDYEAVYQEAKAKLGLPIFIKPANAGSSYGISKLDSFEGFEAALKDAFYHDGK 218 Query: 164 DQLLIEQYVDGIELTCGVMGDASL-----DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 ++++E ++G E+ C VMG+ L D E ++P F+ YE KY ++S PA+ Sbjct: 219 GKVILETTIEGFEIGCAVMGNRELFAGNVDEIETSLP---FFDYEGKYQMVDSHIYCPAR 275 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I ++ +E + LA A++A+ C+G++R D P ++ E+N PG T S +P M Sbjct: 276 ISKELIEEARTLALRAYKALNCKGMTRVDMFKTP-DDQILINEVNTIPGFTDTSRYPTMM 334 Query: 279 AYAGYSFRELLLWMVE 294 AG +F +L+ +V+ Sbjct: 335 KEAGIAFSDLIDRLVD 350 >gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208] gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3] Length = 361 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL +PY +G+LAS+ MDK+ K + + G+P Sbjct: 95 DVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKVIMKHLFAQAGLPQAKYA 154 Query: 110 SILVNRF--TMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L + T DS + + P +KP GSS+GI + + L+ ++ + Sbjct: 155 AFLKKDWKQTPDSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREE--LEKAFELAFEY 212 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++++E+ + G E+ GV+G+ V EIA PK+DFY Y+ KY ++ ++PA++ Sbjct: 213 DRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA-PKTDFYDYKAKYEDGDTDLMIPAQV 271 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + Y E+ +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 272 TDEQYAEISEMAIKAFKAIDGSGLVRADF-FLTNDGQVLINEVNTMPGFTPFSMFPLLWK 330 Query: 280 YAGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 331 EAGVDYSDLIEQLVE 345 >gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] Length = 409 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 58/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S E EVSL S K +A++ F V I +D+ Sbjct: 47 VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106 Query: 43 GLVLAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 + L H D+ F ++HG GEDG +Q +L++L Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------SQHLISPPYV 129 +P+ S I+ SA MDK K+++ G+PV P + + R T S+ L S +V Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASL 187 KP GSS+G+ ++ + + ++ ++H +++IE V G E+ C ++G+ A Sbjct: 227 -KPANQGSSVGVSKVRNAEEYARAIAEALRFDH--KVIIELGVVGREIECAILGNEAAQA 283 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V + SDFYSY+ KY S V+PA++ + + V+++A A QA+ CRG++R Sbjct: 284 SVCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARV 343 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +F +V EIN PG T +S++P++ G + L+ ++E A Sbjct: 344 D-VFLTEEGEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFA 392 >gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] Length = 343 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 143/262 (54%), Gaps = 15/262 (5%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MDK+ +K V+ + G Sbjct: 77 ILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMDKVYTKYVLENFG 136 Query: 105 VPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + ++V + ++ + IKP GSS+GI + + L Sbjct: 137 IKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISKAHNREELEKGLS 196 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212 ++ ++ ++L+E ++ E+ V+G+ EI VP ++FY YE KYS+ S Sbjct: 197 EALKFDR--KILVETALNAREIEVAVLGNDEPKAATPGEI-VPANEFYDYEAKYSNAESK 253 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +LPA + + ++V+ LA ++ + C G+SR DFL D + +V+ EIN PG T +S Sbjct: 254 LLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNEINTIPGFTKIS 313 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P+M G ++ +L+ ++E Sbjct: 314 MYPKMWQAEGKAYGDLISEIIE 335 >gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 359 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 59/346 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 ++ GG S+E EVSL S K A++ F+V+ + +D+ Sbjct: 1 MIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALI 60 Query: 41 -------SVGLVL--------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 +V L+L A + D+ F ++HG GEDG +Q +L + IP+ Sbjct: 61 SLNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPF 120 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPL 133 SG++ SA+SMDK +K+++ G+ + P I + R DS + P IKP Sbjct: 121 VGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPA 180 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDV 189 GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ ASL Sbjct: 181 NQGSSVGVSKVRNAAEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL-C 237 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 E+ + +FYSY+ KY + V +PA I ++ +A +A+ C G++R D Sbjct: 238 GEVVI-SDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDV 296 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG T +S++P++ G EL+ ++E Sbjct: 297 FLTP-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 341 >gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] Length = 348 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ IV + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 183 GVHKIVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] Length = 332 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 158/331 (47%), Gaps = 44/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VSL S + S + + + +DV D V L P Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152 G V SILV R ++ I P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYS 207 ++SS ++IE+++DG+E++ G G TE+ V K++F+ Y KY+ Sbjct: 188 AFMESSD------VMIEKFLDGMEISQGAYKTKDKGVVVFPATEV-VTKNEFFDYNAKYN 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264 + PA++ + K+V +L ++ + GI R D++ D + V LEIN Sbjct: 241 G-EVEEITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINT 299 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMTP S P+ AG +E+L +VE+ Sbjct: 300 TPGMTPTSFIPQQVRAAGLDIKEVLTEIVEN 330 >gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 360 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLV------ 45 + ++ GG SSE EVS+ SG A++ F V I D S ++ Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66 Query: 46 ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L +L + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138 +MDK +K + GVPV I + RF + ++ Y +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNAAEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY NST L PA +P +I V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP- 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 363 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 145/275 (52%), Gaps = 20/275 (7%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + + G VLA + D+ F VLHG +GEDG +Q +LEL +PY +G+LASA MDK Sbjct: 87 VSLSTGAGEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 144 Query: 96 SKQVVSSCGVPVCPSILV--NRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K++ + G+PV ++ +R T+ D + P +KP +GGSS+G+ + Sbjct: 145 TKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVFVKPARGGSSIGVTRVSSWDD-- 202 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYS 201 L + + H ++++E + G E+ CGV M D S++ + EI V + FY Sbjct: 203 LAAAVAVARRHDPKVIVEAAITGREVECGVLEMPDGSVEASTLGEIRVAGVRGREDSFYD 262 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + KY + +PAK+ DI ++ LA A +AI C+G++R DF E Sbjct: 263 FATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAIDCQGLARVDFFL--TDDGPVLNE 320 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P M A +G + LL MVE A Sbjct: 321 INTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 355 >gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_40H22] Length = 362 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 105/342 (30%), Positives = 172/342 (50%), Gaps = 53/342 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVDRS 41 +L GG S+E EVS+ S ++ A++ ++V Q DV + Sbjct: 8 LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67 Query: 42 VGL--VLAHLKPDL-----------AFNV----LHGNFGEDGLVQAILELLEIPYTHSGI 84 GL LA + DL +F+V LHG GEDG VQ +LEL + Y +G+ Sbjct: 68 NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135 ASA+ MDK ++ V + G+ +++ R ++ D Q ++ P +KP+ Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG--DASLDVTEI 192 GSS+GI +S+ + ++S++ ++++E V+ EL C V+G D V Sbjct: 188 GSSIGISKAHDTKSLESAIDLAASYDV--KMMVETSVENARELECAVLGNDDPKASVIGE 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P ++FY Y KY S ++PA++P I E+QR++ A +AI C G+ R DFL P Sbjct: 246 IIPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S +F EIN PG TP+S++P + +G + EL+ ++E Sbjct: 306 -SGDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIE 346 >gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] Length = 347 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNVGISYPELIERLVD 333 >gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] Length = 368 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG +GEDG +Q + EL +PY G+LASA+SMDK+ +K V + GV + Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168 Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V R T + S P IKP GSS G+ + L +++ H Sbjct: 169 PVMRGELSHMESVTERVEKYFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219 ++L+E+ + G E+ C V G + +V V + +DFY ++ KY + S V+ ++ Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVISSGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D ++V+ A A+ G++R DF VF EIN PG T +S++P + Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345 Query: 280 YAGYSFRELLLWMVEDA 296 AG EL+ ++E+ Sbjct: 346 AAGVDKTELVTRLIENG 362 >gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VG----------- 43 + V+ GG S E EVSL S + +A++ + + + I + + +G Sbjct: 6 VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65 Query: 44 --LVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTH 81 + A L PD F VLHG GEDG VQ + EL+ IPY Sbjct: 66 DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVI 130 SG+ SA+ MDK+ +K+++ G+PV + + D H ++ P + Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVF--YKKDLPHKLTEMVEEVEKSFGYPCFV 183 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLD 188 KP GSS+GI + + ++ ++ ++ +LL+E+++ E+ C V+G D Sbjct: 184 KPANLGSSVGITKAHDREELKNAIMHAAEFDR--KLLVERFIPAREIECSVLGNDDPVAS 241 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V +P +FYSY KY + +L PA + + ++++ LA A++A+ C ++R D Sbjct: 242 VPGEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVD 301 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL ++ + E+N PG T +S++P++ +G ++EL+ ++E Sbjct: 302 FLISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIE 348 >gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 348 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P IKP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K D L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I +I +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334 >gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 331 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 163/328 (49%), Gaps = 41/328 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG + E +SL SG+ L F+V +I + D Sbjct: 4 IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63 Query: 41 SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 +V + LK D FN +HG GEDG++QA LL+IPYT ++++ +K Sbjct: 64 TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+ PS +N+ + I P +KP + GSSLGI + +++ + + Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVYQERELAKAI- 182 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++E ++ G E++ GV+ L +TEI + ++DF+ +E KYS S Sbjct: 183 -EHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEI-ISRNDFFDFESKYSG-KS 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGM 268 + PA++ + K++++LA ++ + GISRS+++ DP F+LEIN PG+ Sbjct: 240 QEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYILVNGDP-----FFLEINTIPGL 294 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + SI P+ AG S EL + D+ Sbjct: 295 SEESILPKQLKIAGISLSELFKKNIYDS 322 >gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L PD+ F ++HG +GEDG +Q + EL+++PY G+ ASAL M+K Q + GV Sbjct: 93 LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSA 152 Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P+IL+ + Q I P KP + GSS GI + + I L ++ Sbjct: 153 PTILLTN-QDNQQRQIEAFIQTHDFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFA 209 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 + +L+++ + G+E+ CG++G+ SL V F+ +E KY +++ +PA + Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPL 269 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P I +V+ A L + ++G +G++R DF F +++ EIN PG T S +P M A Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328 Query: 280 YAGYSFRELL 289 G S++ELL Sbjct: 329 AIGLSYQELL 338 >gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] Length = 350 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 162/343 (47%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP ++ + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISP-------PYVIKPLKG 135 SA+SMDK+ K + G+ P + +N ++ +H++ P +KP Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++ + +L++EQ V EL C V+G L + + Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQLD--PRLVVEQGVHARELECAVLGGHQLRSSVVGEV 245 Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDT 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 306 KHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 363 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 M V+ GG S+E EVSL S K A++ F+V+ + +D+ Sbjct: 1 MGVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPA 60 Query: 41 ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77 +V LV + D+ F ++HG GEDG +Q +L + + Sbjct: 61 LIALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANM 120 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130 P+ SG++ SA SMDK +K+++ G+ + P I + R + Q+ P P I Sbjct: 121 PFVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANRE-QYGFEPVREKLGLPLFI 179 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186 KP GSS+G+ + + + + S++H ++L+E + G E+ C V+G+ AS Sbjct: 180 KPANQGSSVGVSKVCSAEEFTAAVELAFSFDH--KVLVESAIVGREIECAVLGNDQPKAS 237 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L E+ + +FYSY+ KY S + V+PA + + ++ +A A + + C G++R Sbjct: 238 L-CGEVVI-SDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMAR 295 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D P K+ EIN PG T +S++P++ G EL+ ++E Sbjct: 296 VDVFLTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIE 343 >gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] Length = 389 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 19/258 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F +LHG FGEDG +Q +LEL ++ Y SG+LASA+ MDK K V++ G+ V P Sbjct: 124 DVVFPLLHGPFGEDGTLQGMLELADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFR 183 Query: 111 ILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 +L D+ L + P +KP + GSSLGI + + +++ H Sbjct: 184 VLPPGREPDAATLDAVVADLGLPLFVKPARAGSSLGISRVDDKADL--ADAIAAARVHDP 241 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKY-SSLNSTHVL 215 ++++E + G E+ CGV+G S ++P + FY +E KY T Sbjct: 242 KVIVEAALFGREVECGVLGGRSGAPPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSC 301 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA +P D+ VQ +A A +A+GC G++R D P +V EIN PG TP S++P Sbjct: 302 PADLPDDVVARVQDVAVRAFEAVGCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYP 360 Query: 276 EMAAYAGYSFRELLLWMV 293 M A +G + L+ +V Sbjct: 361 RMWAVSGLDYASLVDELV 378 >gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont] Length = 364 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ ++HG GEDG +Q +L + +P+ S +L SA+SMDK +K+++ G+ V P + Sbjct: 100 DVIIPIVHGTLGEDGSLQGLLRMANLPFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWL 159 Query: 112 LVN---RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 V R +D Q +I+ P IKP GSS+G V K Q D ++ + Sbjct: 160 SVTQAQRAALDVQAVIARFGLPLFIKPANQGSSVG--VSKVTQPDEFDAALGLAFRFDRK 217 Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPL 221 +LIEQ + G E+ C V+G+ + + + EI V + FYSY+ KY S + T V+PA I Sbjct: 218 VLIEQGISGREIECAVLGNEAPEASPCGEIVVHDA-FYSYDTKYISESGTQVVVPADIST 276 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + + ++ +A A QA+ C G++R D +F + + E+N PG T +S++P++ A Sbjct: 277 EASEAIRAVAITAFQALECFGMARVD-VFLTETGDIIVNEVNTLPGFTNISMYPKLWLAA 335 Query: 282 GYSFRELLLWMVE 294 G S+ +L+ ++E Sbjct: 336 GLSYSDLITRLIE 348 >gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046] Length = 357 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 50/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVG------------- 43 + +L GG S+E EVSLS+ KA AL+ F V I + + VG Sbjct: 5 IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64 Query: 44 ---------------LVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + H++ D+ F +LHG GEDG VQ LE+L IPY +G+L Sbjct: 65 QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137 SA MDK+ KQ+ +P P R + + + P +KP GS Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI K + L+ + + +++IEQ V E+ V+G+ + +V+ EI Sbjct: 185 SVGI--SKATNAAELEKAVQFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIK- 241 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P ++FY Y+ KY ++ ++PA + D+Y + +A A +AI G+ R+DF F + Sbjct: 242 PMTEFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADF-FVTEN 300 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG TPVS++P + + ++ +L+ +++ A Sbjct: 301 NEIYINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342 >gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 334 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQIDVDRSVG---- 43 +A+L GG + E EVS S S L+ D F V++ V +V Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 44 -LVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L H ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVP---VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + G+P + S+L+ Q +S PY +KP GGSS+G+ +K ++ + Sbjct: 125 A--GIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182 Query: 153 DLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206 + ++ + N G Q+++E++V G E + G+ + L TE+ + +F+ YE KY Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEI 262 + + + PA D+ +E Q R+A L + + C+G+ R DF + + K +++EI Sbjct: 242 TPGLTEEITPA----DLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEI 297 Query: 263 NVQPGMTPVSIFPEMAAYAG 282 N PG T S P+ AG Sbjct: 298 NTIPGQTAQSFIPQQVRAAG 317 >gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 378 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q + E++ +PY G+LASA MDK +K ++++ G+ Sbjct: 100 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 157 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148 PV P I ++ F + + +++ P +KP + GSS G+ ++++ Sbjct: 158 PVAPGITLDARDYDAACAFAANGETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKVEREGD 217 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 + L + +H ++L+EQ +D E+ C V+ + D + P Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGDEPRASWPGEIVLDKRAGGDD 277 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY ++HV +PA +P + + V+ A A +A+ G+SR D F K Sbjct: 278 QFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-TFVTADGK 336 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 337 VMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLIE 374 >gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium] Length = 333 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 16/246 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPTLMGK 327 Query: 281 AGYSFR 286 G R Sbjct: 328 YGLEIR 333 >gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] Length = 361 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +LK D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47368] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330] gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330] gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] Length = 353 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 18/286 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ A +L AG V + DVD S+ L +PD LHG Sbjct: 6 VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111 GE+G +QA+LELL +P+ S A DK +K + G+ + Sbjct: 66 GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125 Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L R +D+ + P ++KP +GGS+LG V+ + +P ++ S + D +L E+ Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPSVMV--SCLAYSDTVLAER 183 Query: 171 YVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++DG E+ V+ G+ L + E+ P Y Y +Y+ ++ PA++ D+ Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVE-PLGGVYDYTARYTPGSTDFHCPARLAPDVLAR 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 VQ A AH+ +G R +SR D + D V LE+NV PG+T S Sbjct: 243 VQDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287 >gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 355 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA---------GFKVSQ----IDVDRSVGLVLA 47 + ++ GG S+E +VS+SS K AL F +++ +D D+S+ L+ Sbjct: 9 IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F +LHG GEDG + +L+ + P Sbjct: 69 KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128 Query: 83 GILASALSMDKMRSKQVVSSCGVP-----------VCPSILVNRFTMDSQHLISPPYVIK 131 GIL SAL MDK+ K++ S +P + + N +++ + P +K Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I + LQ + W +++IE+ +D EL CG++G+ L +E Sbjct: 189 PANSGSSLGISKAKTRSEI-IKALQKA-WEIDSRIVIEEGLDVRELECGIIGNLKLTASE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +D+Y Y+ KYS +++ ++PA I I ++++ +A + +A+ G +R DF Sbjct: 247 IGEVSYSTDWYDYDSKYS-MDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + +S K+F EIN PG T S+FP + +G + +L+ +V+ +S L Sbjct: 306 LEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISSDL 355 >gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42] gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42] Length = 354 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL +PY +G+LAS+ MDK+ K + + G+P Sbjct: 88 DVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKVIMKHLFAQAGLPQAKYA 147 Query: 110 SILVNRF--TMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L + T DS + + P +KP GSS+GI + + L+ ++ + Sbjct: 148 AFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLGSSVGISKCRNREE--LEKAFELAFEY 205 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++++E+ + G E+ GV+G+ V EIA PK+DFY Y+ KY ++ ++PA++ Sbjct: 206 DRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA-PKTDFYDYKAKYEDGDTDLMIPAQV 264 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + Y E+ +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 265 TDEQYAEISEMAIKAFKAIDGSGLVRADF-FLTNDGQVLINEVNTMPGFTPFSMFPLLWK 323 Query: 280 YAGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 324 EAGVDYSDLIEQLVE 338 >gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT] gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium novyi NT] Length = 343 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 168/334 (50%), Gaps = 43/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + + +IS IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT--EIAVPKSDFY 200 + + L ++ ++ ++L+E ++ E+ V+G D + T EI VP ++FY Sbjct: 185 AHNREELEAGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPVAATPGEI-VPANEFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KYS+ S +LPA + + ++V+ LA + + C G+SR DFL D + +V+ Sbjct: 242 DYEAKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 EIN PG T +S++P+M G ++ EL+ ++E Sbjct: 302 EINTIPGFTKISMYPKMWQAEGKAYGELISEIIE 335 >gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 333 >gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] Length = 366 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] Length = 355 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGK----ACASALEDAGFKVSQ---------IDVDRSVGLVLA 47 + ++ GG S+E EVS+SS K A S + FKV +D D S ++ Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +K D+ F +LHG GEDG + +L+ + P Sbjct: 69 EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + ++ + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ + ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQKIDS--RILVEEGLEVREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I K SD+Y Y+ KY S N+ ++PA+I I KE++++A + +A+ G +R DF Sbjct: 247 IGEVKYESDWYDYDSKYYS-NNKIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 360 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 15 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 75 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 195 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 250 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 251 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 309 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 310 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 352 >gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] Length = 348 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++ Sbjct: 66 MTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S +P P + V+ + +S P KP GSS+GI Sbjct: 126 MDKITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Sbjct: 184 KAENQTELRTALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E Sbjct: 243 YDAKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47901] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 372 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 32 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 91 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 92 NDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 151 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 152 KITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 209 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 210 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 268 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+N Sbjct: 269 AKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 327 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 328 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 358 >gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94] gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 348 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 183 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVTFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA] gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae JJA] gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17570] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333 >gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 381 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/342 (29%), Positives = 167/342 (48%), Gaps = 62/342 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DR----------- 40 + +L GG S+E EVSLS+ +A AL ++V I + DR Sbjct: 27 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86 Query: 41 -------------SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + L+ H K D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 87 QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R + + Q +I P +KP Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206 Query: 136 GSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI ++ D L+ + + + ++++EQ + E+ V+G+ D E+ Sbjct: 207 GSSVGI-----SKATSRDELKKAIEVALQYDRKIVVEQGIIAREIELAVLGN---DYPEV 258 Query: 193 AVPK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +VP ++FY Y+ KY+ ++ ++PA++P + ++ LA A +AI G+ R+D Sbjct: 259 SVPGEIKPVTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRAD 318 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F F V+ E+N PG TPVS++P + + S+ EL+ Sbjct: 319 F-FVTADHSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELI 359 >gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271] gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271] Length = 325 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++MGG S+E VSL S A L + + +DR Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P+ + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLPMYI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320 >gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 348 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/330 (28%), Positives = 167/330 (50%), Gaps = 43/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++MD Sbjct: 68 NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S +P V ++ + +R +++ ++S P +KP GSS+GI + Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 ++ + +L + +++ ++LIEQ V E+ G++G+ + T E+ V DFY Y+ Sbjct: 188 EEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 245 AKYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + + G S+ EL+ +V Sbjct: 304 TMPGFTQWSMYPLLWEHMGLSYAELIEELV 333 >gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585] gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae 70585] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASAL------------------------------EDAGFK 32 +L GG S+EREVS+ S ++ A+ ED Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66 Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333 >gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] Length = 361 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPID 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + +++D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESCIEEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFL ++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346 >gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 334 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQIDVDRSVG---- 43 +A+L GG + E EVS S S L+ D F V++ V +V Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 44 -LVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L H ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVP---VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + G+P + S+L+ Q +S PY +KP GGSS+G+ +K ++ + Sbjct: 125 A--GIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182 Query: 153 DLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206 + ++ + N G Q+++E++V G E + G+ + L TE+ + +F+ YE KY Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEI 262 + + + PA D+ +E Q R+A L + + C+G+ R DF + + K +++EI Sbjct: 242 TPGLTEEITPA----DLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEI 297 Query: 263 NVQPGMTPVSIFPEMAAYAG 282 N PG T S P+ AG Sbjct: 298 NTIPGQTAQSFIPQQVRAAG 317 >gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1] gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1] gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33] gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1] gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94] gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99] gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] Length = 353 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 155/335 (46%), Gaps = 53/335 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG S ER+VSL+SG + A AL + G +V +D ++ L+P Sbjct: 5 ILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEVGK 64 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F LHG +GEDG VQ LE + +T Sbjct: 65 EPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVRFT 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISP-PYVIKPLKG 135 + A A + K R++ V+++ GVPV L + + + L++ P V KP+ Sbjct: 125 GADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPVAD 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS + V + D L+ L G +LL+E ++ G E T GV+G L V EI + Sbjct: 185 GSS--VSVHRADSLAELERLAPEMRADGAELLVEPFLPGREFTVGVIGGQVLPVIEIEL- 241 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPL 253 + + Y KY + V PA IP + +Q+LA AH+A+G SR+DF D Sbjct: 242 STPLFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCDAT 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + LE+N PG+T S+ P A+ AG+++ +L Sbjct: 302 GEPMC-LEVNALPGLTATSLLPLAASGAGWTYADL 335 >gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] Length = 325 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++MGG S+E VSL S A L + + +DR Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P+ + Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLPMYI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320 >gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301] gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942] gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/342 (31%), Positives = 172/342 (50%), Gaps = 53/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS+ S A ASAL D ++V +D+ G VLA+ Sbjct: 6 VGLLFGGRSGEHEVSIRSAAAIASALADPSNRDRYQVLPFYIDKEGGWHSGETAAQVLAN 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 KP ++ F +LHG GEDG +Q +L L++ P+ SG+L SAL Sbjct: 66 QKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRPFVGSGVLGSAL 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137 MDK+ KQ + +P + VNR + S + + P +KP GS Sbjct: 126 GMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD----ASLDVTEI 192 S+GI ++ L+ + +L+IE +D E+ C V+G+ AS+ + EI Sbjct: 186 SVGIAKVRD--RAELEAALDQAAALDRRLIIEAAIDNPREVECAVLGNDYPQASI-LGEI 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + ++PA++ ++ +++Q LA A QA+ G+SR DF D Sbjct: 243 TY-DSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGLSRLDFFLDS 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F EIN PG T +S++P++ A +G +F +L+ +++ Sbjct: 302 QG-QIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQ 342 >gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EVFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] Length = 364 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 135/264 (51%), Gaps = 18/264 (6%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 L H+ D+ F V+HG GEDG +Q + E+LE+PY G+L S+L MDK+ SK + G Sbjct: 96 ALGHI--DIWFPVIHGPNGEDGTLQGLFEVLEVPYVGCGVLGSSLGMDKLASKSAFAQAG 153 Query: 105 VPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPL 152 +P V+R + S I P P +KP GSS+GI Q + Sbjct: 154 LPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGYPCFVKPANLGSSVGISKATNRQELET 213 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLN 210 L ++S++ ++++E V E+ C ++G+ + + + + +DFY Y KY+ Sbjct: 214 ALDLAASYDR--RVIVETGVVAREIECSILGNDNPKASVLGETRFSTDFYDYAAKYTEGG 271 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + ++P+ + + +Q +A A QAI G++R DF + + ++ EIN PG T Sbjct: 272 AELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLARVDFFYIEKTDQILINEINTMPGFTA 331 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 S++P M +G F +L+ +++ Sbjct: 332 TSMYPMMWEASGIKFSDLVDKLIQ 355 >gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54] gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974] gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974M2] gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54] gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54] gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104] gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41301] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 370 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 147/255 (57%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + V+HGN GEDG +Q + +LL+ PY SG+LASA S DK +KQ+++ + + Sbjct: 97 DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 156 Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +V NR M +L + IKP GSS+GI + +Q LD L + ++ + + Sbjct: 157 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 214 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E+ +D E+ C ++G+ + ++ I VPK+D FY Y K+ + T LP ++ Sbjct: 215 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 274 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D+ K +Q+++ A +A+G +G++R DFL + + EIN PG T +S++P++ Sbjct: 275 PADLTKRIQQMSLDAFKALGLKGMARVDFLVSE-DGEPYLGEINTLPGFTNISLYPKLWE 333 Query: 280 YAGYSFRELLLWMVE 294 +G S+ L+ +++ Sbjct: 334 VSGISYTALIDQLIQ 348 >gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] Length = 347 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/332 (30%), Positives = 162/332 (48%), Gaps = 45/332 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K+V+ S G+ P + L ++ + + +S P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLASKIA-EVEEKLSYPVFTKPSNMGSSVGI--SK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y Sbjct: 184 SENKEELRQALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T S++P + G S+ EL+ +V+ Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1] gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1] Length = 318 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 158/318 (49%), Gaps = 34/318 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE +SL +G + L + ++ + D SV + Sbjct: 1 MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q LELLEIP+T G+ +AL+ +K + G Sbjct: 61 DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N ++D +++ P +K K GSS G V K + L + + Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFG--VSKVHEISDLKNAIAIAL 178 Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 D+++IE ++DG+E++ GV+ G+ + L +TEI V ++DF+ YE KY S + P Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEI-VSENDFFDYEAKYLG-KSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I ++ +V ++A ++ + G SRS+F+F + + LE+N PGMT SI P+ Sbjct: 237 ARISPELSAKVAKVAKKIYEILKLEGFSRSEFIFK--DDEPYLLEVNTIPGMTEESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVE 294 A AG S L VE Sbjct: 295 QAKEAGISLEALFGNAVE 312 >gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] Length = 351 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 162/343 (47%), Gaps = 55/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----------------GLVL 46 VL GG+S+ER+VSL+S L + G +DV + GL + Sbjct: 5 VLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGLEI 64 Query: 47 A----HLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74 A +PDLA F LHG GE+G +QA +L Sbjct: 65 AKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASFDL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL-ISPPYVIK 131 L I YT L A++MDK +KQ+ GV + + + D + L +S P V+K Sbjct: 125 LGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVVVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GGSS+G+ ++ ++ L +S+ + +++++E Y+ G E CGV+ +L E Sbjct: 185 PCSGGSSIGVYIVNTEEEYRQAL--KNSFRYENEVVVETYIKGREFACGVIDGKALPPIE 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK+ ++ Y KY + + V PA I +I + ++ L A QA+ SR+DF+ D Sbjct: 243 I-IPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFILD 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE+N PGMT S+ P+ A G + +L +++ Sbjct: 302 A-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQ 343 >gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] Length = 277 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L D F LHG GE+G +QA ++ I Y+ S S L+MDK +KQ++ +P Sbjct: 31 LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPT- 89 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 P + + + S P V+KP+ GSS+G+ +++ + L ++ +N +++I Sbjct: 90 PKWQI--WEQGQEVYYSTPCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNS--KVMI 145 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 EQ ++G E + GV+GD L EI +P+ FY+YE KY + + PA I D+ + Sbjct: 146 EQKIEGREFSVGVLGDNVLPAIEI-IPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + L ++ +G SR D++ ++ +E N PGMTP S+ P+ A G SF EL Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTK-ELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263 Query: 289 LLWMVE 294 +VE Sbjct: 264 CETIVE 269 >gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1] Length = 368 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG +GEDG +Q + EL +PY G+LASA+SMDK+ +K V + GV + Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168 Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V R T + S P IKP GSS G+ + L +++ H Sbjct: 169 PVMRGELSHMESVTERVEKHFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219 ++L+E+ + G E+ C V G + +V V + +DFY ++ KY + S V+ ++ Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVIASGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D ++V+ A A+ G++R DF VF EIN PG T +S++P + Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345 Query: 280 YAGYSFRELLLWMVEDA 296 AG EL+ ++E+ Sbjct: 346 AAGVDKTELVTRLIENG 362 >gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 348 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P V ++ + +R +++ +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 + ++ + +L + +++ ++LIEQ V E+ G++G+ + T E+ V DFY Sbjct: 186 ESEEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I ++ A A +AIG G+SR DF +++ E Sbjct: 243 YQAKYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + + G ++ EL+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWEHMGLNYAELIEELV 333 >gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 368 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG +GEDG +Q + EL +PY G+LASA+SMDK+ +K V + GV + Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168 Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V R T + S P IKP GSS G+ + L +++ H Sbjct: 169 PVMRGELSHMESVTERVEKHFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219 ++L+E+ + G E+ C V G + +V V + +DFY ++ KY + S V+ ++ Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVIASGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D ++V+ A A+ G++R DF VF EIN PG T +S++P + Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345 Query: 280 YAGYSFRELLLWMVEDA 296 AG EL+ ++E+ Sbjct: 346 AAGVDKTELVTRLIENG 362 >gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] Length = 333 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43 +A++ GG SSE +VSL S + S + + V S + VDR+ Sbjct: 8 IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D A+ +HG GE+G++Q EL++IPY+ SG+L AL+ +K + + Sbjct: 68 SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127 Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 +S GV V SIL+ R + Q + + P +KP+ GSS G+ +K DQ P Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209 + ++ + +IE Y+ G+EL+ G + V TE+ V ++F+ Y+ KY+ Sbjct: 188 RV---AFMQNEAAMIESYMKGVELSIGCYKTSEKAVVFPATEV-VTSNEFFDYDAKYNG- 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQP 266 + PA+I D K+V + + C GI R D++ + V LE+N P Sbjct: 243 QVQEITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTP 302 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ AG E+L +VE+ Sbjct: 303 GMTATSFIPQQVRAAGLDITEVLTEIVEN 331 >gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 384 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 25/306 (8%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 ++ E+ +G S + D G + + ++ + G+ A + D+ F VLHG +GEDG +Q Sbjct: 65 ADGELPEVTGGTAVSLVGDPGGRGLAV-LEPAAGVASALTEVDVVFPVLHGAYGEDGTIQ 123 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSILVNRFTMD- 119 +LE+ IPY SG+ ASA SMDK +K+++++ G+P ++ + +D Sbjct: 124 GLLEMSGIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDD 183 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP + GSS+GI + P + ++S + ++++E V G E+ Sbjct: 184 ADRERLGLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAASVDP--KVIVEAAVPGREVE 241 Query: 179 CGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 CGV+ ASL P +++Y + KY +PA + + + VQ A Sbjct: 242 CGVLARPDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETAR 301 Query: 233 LAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A A+ CRG++R DF D R V E+N PG TP+S++P M A G F L Sbjct: 302 KAFLALDCRGLARVDFFLGTGPDGADRLVV-NEVNTMPGFTPISMYPRMWAATGVDFAAL 360 Query: 289 LLWMVE 294 + +VE Sbjct: 361 VDRLVE 366 >gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] Length = 348 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + +S P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 D L + ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ Sbjct: 186 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++P + +++ A A +AIG G+SR DF + +VF E+N Sbjct: 245 AKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVRLAEEAFAKR 343 >gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 374 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 147/255 (57%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + V+HGN GEDG +Q + +LL+ PY SG+LASA S DK +KQ+++ + + Sbjct: 101 DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 160 Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +V NR M +L + IKP GSS+GI + +Q LD L + ++ + + Sbjct: 161 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 218 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E+ +D E+ C ++G+ + ++ I VPK+D FY Y K+ + T LP ++ Sbjct: 219 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 278 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D+ K +Q+++ A +A+G +G++R DFL + + EIN PG T +S++P++ Sbjct: 279 PADLTKRIQQMSLDAFKALGLKGMARVDFLVSE-DGEPYLGEINTLPGFTNISLYPKLWE 337 Query: 280 YAGYSFRELLLWMVE 294 +G S+ L+ +++ Sbjct: 338 VSGISYTALIDQLIQ 352 >gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 347 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI + Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRSEN 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 187 QEELRQAL--KLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] Length = 347 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 164/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+E EVSL S K A++ F V + +D Sbjct: 9 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68 Query: 40 ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R + LA + +P D+ F ++HG GEDG +Q L + + Sbjct: 69 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA DK +K+++ G+ + P I + R + + + P +K Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 246 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N V+PA+IP ++ +++ +A A+Q +GC G +R D Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVD- 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S +P++ +G + +L+ ++E Sbjct: 306 VFLTADNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIE 351 >gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 354 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 17/261 (6%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 LK D+ F VLHG GEDG VQ +LEL IPY G+L+SA+SMDK+ +K +V GV Sbjct: 92 LKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCGVLSSAVSMDKLYTKIIVDDLGVTQA 151 Query: 109 PSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + V R + L+ S P +KP GSS G+ + + + L +++ Sbjct: 152 AYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNAGSSKGVSRAEDRKELMEALTEAAV- 210 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEIAVPKSDFYSYELKYSSLNSTHVL 215 H ++L+E+ + G E+ C V G +L V EI + ++FY ++ KY + +S V+ Sbjct: 211 -HDRKILVEEMIVGREIECAVFGGGNLPAEASGVGEI-LAAAEFYDFDAKYYNSDSRTVV 268 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 +P + V+ A QA+ G++R DF VF EIN PG T +S++P Sbjct: 269 DPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFVKEDGSVVF-NEINTMPGFTAISMYP 327 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + AG + EL+ ++E A Sbjct: 328 MLWEAAGMNKDELVGRLMEHA 348 >gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] Length = 357 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 138/259 (53%), Gaps = 23/259 (8%) Query: 51 PD-LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 PD + F +LHG GEDG +Q + E+L++PY G+LASA MDK+ SK + G+P P Sbjct: 93 PDTVVFPILHGPNGEDGTIQGLFEILDLPYVGCGVLASANGMDKIASKHLFQQAGIPQVP 152 Query: 110 SI-------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + + NR + + P +KP GSS+GI + + + + Sbjct: 153 FVPFVKADFKKSPEAIYNRI----EGTLRYPVFVKPANMGSSVGISKATNREELTAAIEE 208 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHV 214 + ++ ++++EQ +D E+ V+G+ ++ + + V ++ FY Y KY + +T Sbjct: 209 ALKYDR--RIVVEQGIDAREVEVAVLGNDEVNTSVVGEVVKQAGFYDYNEKYINNTTTLQ 266 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA IP ++ +++ A A +AI G++R DF +++VF E+N PG T S++ Sbjct: 267 IPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDFFLTE-TQEVFINEVNTMPGFTQFSMY 325 Query: 275 PEMAAYAGYSFRELLLWMV 293 P++ G S+++L+ ++ Sbjct: 326 PKLWEAMGISYKDLVEELI 344 >gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031] gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae P1031] Length = 347 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] Length = 382 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 171/343 (49%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ ++VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67 Query: 37 --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L L+ +K DL V+HGN GEDG VQ++ LL PY SG Sbjct: 68 AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGS 137 I +SA+S DK +KQ+++ G+ ++V + +T + + +KP + GS Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE---IA 193 S+GI + + D +++ ++L+E+ + + E+ C V+G+ + ++ I Sbjct: 188 SVGIYKVSNKEE--FDKAIQDGFHYDFKILVEETIANPREVECSVLGNRDIKASKLGAIR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP D FY Y K+ + +P ++P ++ KE+Q+++ A + +G RG++R DFL D Sbjct: 246 VPAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F E+N PG T +S++P++ A +G ++++LL +++ Sbjct: 306 ENDVPYFG-EVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQ 347 >gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] Length = 325 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++MGG S+E VSL S A L + + +DR Sbjct: 5 IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P+ + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEVQLPMYI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320 >gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium] gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082] Length = 358 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 137/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI + + + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_47G05] Length = 345 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG VQ +LEL + Y +G+ ASAL MDK ++ + ++ G+P Sbjct: 77 DVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALARAIFAASGLPQTQYT 136 Query: 112 LVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ R + P +KP GSS+GI + Q + + L +S ++ Sbjct: 137 VIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDRQGLQVGLELASRYDT 196 Query: 163 GDQLLIEQYVDGI-ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 +L++E+ V+ EL C V+G+ + V EI +P ++FY Y KY S V+PA Sbjct: 197 --KLIVERSVENARELECAVLGNEFPQASGVGEI-IPGAEFYDYTTKYIDDRSELVIPAV 253 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + +Q+LA +AI C G++R DF F V EIN PG TP+S++P++ Sbjct: 254 LEKSKTETIQQLAIQTFKAIDCSGLARVDF-FMCSDGSVLVNEINTMPGFTPISMYPKLW 312 Query: 279 AYAGYSFRELLLWMVE 294 A AG ++ +L+ +++ Sbjct: 313 AAAGIAYGDLIDRLIQ 328 >gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] Length = 308 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 155/303 (51%), Gaps = 21/303 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 +A+L GG SSER +SL SGK A++L+D G + ID + +A ++ D F LH Sbjct: 8 VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G GEDG +Q IL+ ++ YT +G +S + K+ +K++ S +P P +N+ F Sbjct: 68 GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLL 167 M + IS P +IKP GSS+G+ +K+ + I ++ S+ + ++ Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVE-----SFKYDRYII 182 Query: 168 IEQYVDGIELTCGVMGDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 IE+Y+ G E T ++ L +I + + +SY KY ++ P Sbjct: 183 IEKYIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKF-VEYICPGGSSQSKEIL 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++++A A++AIGC G+SR D L + LEIN PGMT S+ A +G SF Sbjct: 242 IKKIALAAYKAIGCFGLSRVD-LKQNYDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFS 300 Query: 287 ELL 289 +L+ Sbjct: 301 KLV 303 >gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] Length = 358 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] Length = 326 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLVLAHLKP------ 51 +A++ GG SSE +SL S + S L+ + V + R +V L P Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI L T+ + ++S P +KP GGSS G+ +K+ +I + Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 + +++ G +++IE ++DG E+TCG A +V TE+ V ++F+ ++ KY+ Sbjct: 184 AKAFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEV-VTDNEFFDFDAKYNG-QVQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 242 EITPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 FIPQQVRAAGLEMKDVMTDIIEN 323 >gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] Length = 358 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 137/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI + + + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Hungary19A-6] gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Hungary19A-6] Length = 347 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 303 TMPGFTQWSMYPLLWDNMGITYPDLIERLVE 333 >gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 353 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 138/257 (53%), Gaps = 16/257 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG VQ ILEL +IPY G+LASA+SMDK+ +K++VS G+ + Sbjct: 95 DVVFPVLHGLYGEDGTVQGILELAKIPYVGCGVLASAVSMDKLSTKRMVSGLGICQAAYV 154 Query: 112 LVNRFTM-DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + D +IS P +KP GSS G+ + + L +++ ++ Sbjct: 155 SVMKAELKDMDAVISKIEKEIPYPVFVKPSNAGSSRGVTRADNREELITGLKEAA--DND 212 Query: 164 DQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++L+E+ + G E+ CGV GD + V EI + ++FY ++ KY + S V+ ++ Sbjct: 213 RRILVEEMIVGREIECGVFGDGDSTKASGVGEI-LAAAEFYDFDAKYYNAESKTVVDPEL 271 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + V+ A A+ G+SR DF F V + EIN PG T +S++P + Sbjct: 272 PDGATERVREAAVKIFNAVDGYGLSRVDF-FVKADGTVVFNEINTLPGFTAISMYPMLWE 330 Query: 280 YAGYSFRELLLWMVEDA 296 G R+L+ +++ A Sbjct: 331 ARGVDKRQLIDDLIDHA 347 >gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] Length = 360 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LELL IPY +G+LASA MDK+ KQ+ + G+P + Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASAAGMDKVVMKQLFAQAGLPQVEYV 154 Query: 112 LVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 R ++ + P +KP GSS+GI + + +++ ++ Sbjct: 155 SFIRREWEADRTAAYEKVETLGYPCFVKPANLGSSVGISKCDNREELEAAFVEAFLFDR- 213 Query: 164 DQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 ++++E G E+ GV+G +A+ V +PK FY Y+ KY ++ ++PA+I Sbjct: 214 -KIIVEAAAVGREVEIGVLGNDEAACSVVGEILPKKAFYDYKAKYEDGDTGLIIPAEITE 272 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + ++E+ LA A +AI G+ R+DF K E+N PG TP S+FP + +A Sbjct: 273 EQHQEMSALAIKAFKAIDGSGLVRADFFLTS-EGKFIINEVNTMPGFTPFSMFPLLWKHA 331 Query: 282 GYSFRELLLWMV 293 G + +L+ +V Sbjct: 332 GVEYPDLIEKLV 343 >gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 348 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K D L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I I +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334 >gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 371 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 20/266 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + +LHG +GEDG VQ +LE+L+IPY SG+LASA +MDK +K V+ + G+ P I Sbjct: 105 DVFWPLLHGVYGEDGTVQGMLEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGI 164 Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +V +R+ +S + + P+ +KP + GSSLG+ + L+ ++ Sbjct: 165 VVHEDRWAEESHRVATYLRRNHPLPWFVKPARAGSSLGVTRVTDPAQ--LEAAMKEAFAE 222 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV- 214 ++L+E+ +D E+ CGV+ A +P +FY YE KY + + Sbjct: 223 DPKVLVEEGLDAREVECGVLQGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSID 282 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA +P + +EV+ + A +A+G G++R D +F +V E+N PG TP S+F Sbjct: 283 VPAALPDAVLEEVRETSCRAFRALGLEGLARVD-MFVTSDHRVLINEVNTMPGFTPYSMF 341 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P + G S+ +L+ ++E A R Sbjct: 342 PVLWENMGLSYADLIAELIEQARSRR 367 >gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] Length = 312 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 145/295 (49%), Gaps = 17/295 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS---QIDVDRSVGLVLAHLKPDLAFNVLH 59 +LMGG S+ERE+SL SGKA +AL + G V+ ID + ++ H D+ F LH Sbjct: 5 LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRH---DVVFLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------PVCPSILV 113 G GEDG +Q++LE +P+T S AS ++ K SK G+ P + Sbjct: 62 GTGGEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAI 121 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + L+S P+ +KP GSSLG+ I + +P + + LIE+ + Sbjct: 122 EKIQNRAARLVS-PWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKLDKAG--LIEEAIS 178 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T G+ + I + +F +Y KY + H + + K++ +A Sbjct: 179 GTEWTVGLFDSVTFPPVAIQAHR-EFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVARE 237 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+QA+G G++R D + D + + LE+N PGMT S P+ AA G+S EL Sbjct: 238 AYQAVGATGLARVDLICD-VQGNPWILEVNTIPGMTETSTVPKAAAAFGWSLGEL 291 >gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] Length = 323 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 156/304 (51%), Gaps = 18/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ-----IDVDRSVGLV--LAHLKPDL 53 +AVL GGIS EREVSL SGK AL +K + IDV LV L + Sbjct: 20 IAVLHGGISDEREVSLRSGKNVFEAL--TSYKELKDSTILIDVKDHYELVEILKKENVEY 77 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 +N+LHG FGEDG +Q +L+ L I YT L S+L M+K+ +K++ S + L+ Sbjct: 78 CYNILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLL 137 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ + P ++KP+ GSS+G+ +IK + ++++ H +E Y+ Sbjct: 138 EDAVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEFD-NIVKDIKDIH--NYFLEPYIK 194 Query: 174 GIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+T G++ D D+ + PK++ Y Y+ KY+ + +PAK+ DI K++ Sbjct: 195 GKEVTVGLVRDND-DIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIE 253 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ +GC G+ R D + + +E+N Q GMT S P MA F +++ Sbjct: 254 NCKKAYDVLGCEGLCRIDAIISD-DGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVV 312 Query: 290 LWMV 293 L+++ Sbjct: 313 LYIL 316 >gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101] gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 366 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 20/259 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG +Q +L+L+++P+ SG+L SA+ MDK+ K G+P Sbjct: 104 DVWFPILHGPNGEDGTIQGLLKLMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQ 163 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 +V R + S + P P +KP GSS+GI ++ + L ++S Sbjct: 164 VVTRSQIWSNSCVFPKLCDDIETTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAAS 223 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ ++++E V+ EL C V+G+ AS+ V EI SDFY YE KY+ + + Sbjct: 224 YDR--RIIVEAGVEAKELECAVLGNDMPKASI-VGEITY-NSDFYDYETKYTEGKADLHI 279 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++ I +++ +A A A+ G++R DF + + ++ EIN PG T S++P Sbjct: 280 PARVSEAIATKIKEMATQAFLAVDAAGLARVDFFYVEKTGEILINEINTMPGFTSSSMYP 339 Query: 276 EMAAYAGYSFRELLLWMVE 294 + +G F EL+ +++ Sbjct: 340 MLWEASGIPFSELVDTLIQ 358 >gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 361 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D Q S P +KP GSS+GI K + + +++ ++ Sbjct: 155 SFIRSAWEKDRQEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 353 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + +S P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 D L + ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ Sbjct: 191 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++P + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 358 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 146/259 (56%), Gaps = 24/259 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG VQ + E+ +P GIL SA ++DK +K+++ + G+PV ++ Sbjct: 98 DILFPVLHGPYGEDGSVQGLAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 157 Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 V T++S+ + P IKP + GSS+G+ + Q L + ++ H Sbjct: 158 TVRADAAPSLATLESE--LGLPLFIKPARQGSSVGVAKVHASQEFAPALAE--AFRHDHT 213 Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSD--FYSYELKYSSLNSTHV-LPA 217 LL E++V G E+ V+ DA+ D+ EI VP + FY+Y+ KY N + +PA Sbjct: 214 LLAEEFVAGREIEFSVLEDAAGDLFVSRPGEI-VPAENHGFYNYDAKYVDENGAALKVPA 272 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFP 275 ++P ++ ++ +A A +A+GC G++R DF L+ + +L EIN PG T +S++ Sbjct: 273 ELPPNVEAAMRDMAAKAFRAVGCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYS 329 Query: 276 EMAAYAGYSFRELLLWMVE 294 + A +G S+ E++ +V+ Sbjct: 330 KAMAASGVSYAEVIDRLVD 348 >gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] Length = 366 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG SSE EVSL S K A++ F V + +D+ Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 41 ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 +V L+ + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------LISPPYVI 130 P+ S +L SA+SMDK +K+++ G+ V P + + R ++H + P + Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANR-ARHPYDSVTAQLGLPLFV 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188 KP GSS+G+ ++ + + ++H ++L+E + G E+ C V+G+ Sbjct: 185 KPANQGSSVGVSKVRNQAEFERAVDLAFRYDH--KVLVESAIVGREIECAVLGNDYPKAS 242 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V V +FYSY+ KY + + V +PA + ++++ ++ +A A Q + C+G++R D Sbjct: 243 VCGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P ++V E+N PG T +S++P++ +G + L+ ++E Sbjct: 303 VFLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIE 348 >gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311] gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311] Length = 353 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 27/285 (9%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L AGF+ ID DR D+ F VLHG GEDG VQ + L+ PY SG+L Sbjct: 80 LPPAGFRSLPIDNDRV----------DVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSGVL 129 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLK 134 SA+ MDK+ K ++ G+P P + +N + + + P +KP Sbjct: 130 GSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKPAN 189 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191 GSS+GI + + L +++ H +L++E V EL C V+G L V E Sbjct: 190 MGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVVGE 247 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I+ ++D+Y YE KY+ S ++PA +P + ++Q +A A A+ G++R D +D Sbjct: 248 ISF-EADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFYD 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T S++P + +G + +L+ +V A Sbjct: 307 EKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351 >gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] Length = 365 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + ++ GG S+E EVSL S K A++ F V + +D+ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 43 GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77 + L H D+A F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V R +D++ +I+ P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G V K D D + +++ ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVG--VSKVDSIEEFDAALALAFSFDRKVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V + FYSY+ KY S + V+PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDA-FYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F ++ E+N PG T +S++P++ AG S+++L+ +++ Sbjct: 303 -VFLTNDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLID 348 >gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25] gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25] Length = 364 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 30/296 (10%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 S RE+++ GKA +E +G GL L H+ D+ F ++HG GEDG +Q Sbjct: 72 SNRELAVVPGKASQQLVETSG-----------TGL-LEHV--DVIFPIVHGTLGEDGCLQ 117 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HL 123 +L + ++P+ S +L SA+ MDK SK+++ G+ V P I + R + D+ + Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNT 177 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP GSS+G+ + + + + ++ +++L+E V G E+ C V+G Sbjct: 178 LGLPMFVKPANQGSSVGVSKVGTEAEYHAAVELALGFD--EKVLVESAVKGREIECAVLG 235 Query: 184 DA---SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V S FYSY+ KY + V+PA I D + ++ LA A + +G Sbjct: 236 NEHPIASGCGEIVV-SSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLG 294 Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G++R D FL D V EIN PG T +S++P++ AG S+ EL+ ++E Sbjct: 295 CSGLARVDVFLTD--DGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIE 348 >gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] Length = 356 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 15/258 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-GVPVCPS 110 D+ F VLHG +GEDG +Q ILEL IPY G++ASA+SMDK+ +K++V V Sbjct: 95 DVVFPVLHGLYGEDGTIQGILELAGIPYVGCGVVASAVSMDKLFTKKIVDGLKDVRQAKY 154 Query: 111 ILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + V R+ + + + P +KP GSS G V K L+ + H Sbjct: 155 VPVRRYELKEMDKVLDGIEERLPYPVFVKPSNAGSSKG--VSKAGDRAGLEKALRLAAEH 212 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAK 218 +++L+E+ + G E+ C V+G + + + + A + FY ++ KY++ S V+ + Sbjct: 213 DEKILVEETIVGREIECAVLGTSDVKASGVGEILAADSAAFYDFDAKYNNAESKTVINPE 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P EV+ A +A+ G+SR DF + + V + EIN PG T +S++P + Sbjct: 273 LPDGKTDEVRNDAVRIFKAVDGFGLSRVDFFIENGTNDVVFNEINTMPGFTSISMYPMLW 332 Query: 279 AYAGYSFRELLLWMVEDA 296 A G +EL+ ++ +A Sbjct: 333 ADRGIEKKELVDELINEA 350 >gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40] Length = 361 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +LK D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] Length = 353 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 141/257 (54%), Gaps = 18/257 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG VQ + ++ +P GI SA ++DK +K++V+ G+ Sbjct: 94 KIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAK 153 Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHG 163 S+ + R + + + + P IKP + GSS+G+ +V + D + S + + Sbjct: 154 SVTITREEVPAFSALEQALGLPIFIKPARQGSSVGVHKVVTEADYQAAM----SDGFTYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGD--ASLDVTEIA--VPKSD--FYSYELKYSSLNSTHV-LP 216 D+LL E+++ E+ CGV+ D +L V+ VP FYSY+ KY + T + +P Sbjct: 210 DKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP 269 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A++P + E++ +A A + +GC ++R DF F R++ EIN PG T +S++ + Sbjct: 270 AELPEQVENEIRAIAARAFRVLGCDSMARVDF-FVTADRRIVLNEINTIPGFTDMSMYSK 328 Query: 277 MAAYAGYSFRELLLWMV 293 + A +G S+ E++ +V Sbjct: 329 VMAVSGVSYPEIINRLV 345 >gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Taiwan19F-14] gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Taiwan19F-14] gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA04375] Length = 347 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRPALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] Length = 349 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 46/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39 + +L GG S+ER+VS+ S ++ A+ F V S+ D Sbjct: 6 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 65 Query: 40 RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + ++A +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 MDK+ +KQV+ S+ +P + L ++ + LI P +V KP GSS+GI Sbjct: 126 MDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 183 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 K + L + + + ++LIEQ VD E+ G++G+ + T EI V F Sbjct: 184 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 241 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 242 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 300 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S++P + G S+ +L+ +V Sbjct: 301 NELNTMPGFTQWSMYPLLWENMGLSYSDLIEELV 334 >gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] Length = 326 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLVLAHLKP------ 51 +A++ GG SSE +SL S + S L+ + V V R +V L P Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI L T+ + ++S P +KP GGSS G+ +K+ +I + Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212 +++ G +++IE ++DG E+TCG A +V TE+ V ++F+ ++ KY+ Sbjct: 184 DKAFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEV-VTDNEFFDFDAKYNG-QVQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 242 EITPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 FIPQQVRAAGLEMKDVMTDIIEN 323 >gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 348 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K D L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I I +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334 >gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 348 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 164/332 (49%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I D V + + + F +LHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S GVP V ++ + ++ ++ +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K D L + + ++LIEQ VD E+ G++G+ + T E+ V + FY Sbjct: 184 KADSETELREAIQLALQYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEV-VKEVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA++ D+ +++ A A +A+GC G+SR DF F ++ E Sbjct: 243 YQAKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDF-FLTKDGFIYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + G S+ EL+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLSYPELIERLV 333 >gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] Length = 361 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH] gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH] Length = 365 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 164/337 (48%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQID------------------VD 39 + ++ GG+S E E+SL S SAL + S ID + Sbjct: 6 LMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIK 65 Query: 40 RSVGLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 R +++ L+ D+ F ++HG GEDG +Q L++++IP +GIL S Sbjct: 66 RDSSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSS 138 A+S++K K ++ S +P+ P I ++ D + ++ P ++KP GSS Sbjct: 126 AISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSS 185 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI + D I + ++ + +++E+++ E+ C V+G+ + + EI V Sbjct: 186 IGISIAYNDTQI--EKCIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQ 243 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS++ V +PA++ + +++ AFL ++ + RG++R DFL + Sbjct: 244 DFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ EIN PG T +S+F +M + G + L+ Sbjct: 304 DTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLV 340 >gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 361 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 161/338 (47%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R T + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] Length = 333 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSV----GLVLAHLKPDL 53 +A++ GG SSE +VS+ S + S + + V + + D +V G + K D Sbjct: 8 IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67 Query: 54 AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +F +HG GE+G++Q ELL IPY+ SG+L A++ +K + Sbjct: 68 SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++ GV V S+LV R D Q ++ P +KP+ GSS G+ +K + L Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210 + ++ D +IE ++DG EL+ G V TE+ V ++F+ Y+ KY+ Sbjct: 188 RR--AFMESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEV-VSSNEFFDYDAKYNG-Q 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267 + PA+I KEV + + C GI R D++ D + V LE+N PG Sbjct: 244 VQEITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPG 303 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MTP S P+ AG + ++L +VE+ Sbjct: 304 MTPTSFIPQQVRAAGLNITDVLTEIVEN 331 >gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457] gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28] Length = 353 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] Length = 366 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 165/343 (48%), Gaps = 59/343 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S+E EVSL S A++ + ++ I VD+ L Sbjct: 11 VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70 Query: 47 -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 A+ +P D+AF+VLHG GEDG VQ +L +L I Sbjct: 71 AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130 PY +L SA+ MDK +K+V+ GVPV PS+ + R T D+ + P I Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLR-TGDAAPDVDAIIGQLGLPLFI 189 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ + L + ++ ++L+EQ + G E+ V+G+ S +V+ Sbjct: 190 KPASQGSSVGVSKVTDRAGFAAALALAFRYDA--KVLVEQGISGREIETAVLGNDSPEVS 247 Query: 191 ---EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI + +FY+Y+ KY + V+PA +P I ++++A A+ A+GC ++R Sbjct: 248 VCGEI-LANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARV 306 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF ++ E+N PG T +S++P++ +G + L+ Sbjct: 307 DFFLTDQG-QILLNEVNTLPGFTSISMYPKLWEASGLDYPALV 348 >gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] Length = 358 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI + + + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S +P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSTYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a] gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1] Length = 361 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] Length = 361 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 380 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 167/362 (46%), Gaps = 76/362 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S+E E+SL S + AL+ F+ I +D+S +L Sbjct: 9 VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68 Query: 47 --------------AHLKP----------------DLAFNVLHGNFGEDGLVQAILELLE 76 AH P D+ F VLHG GEDG VQ +LEL Sbjct: 69 LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISP- 126 +PY SG+L SA+ MDK K+++ +P+ P + + R D L +P Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCG 180 P +KP GSS+G+ +K I + + ++ +++ EQ ++G+ E+ C Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAVEHAFEFDL--KIVCEQGIEGVREIECS 246 Query: 181 VMGD----ASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDI----YKEVQRLA 231 V+GD AS+ EI V +D FYSY KY + + +IP D+ VQ +A Sbjct: 247 VLGDDDPIASVP-GEIVVGHADGFYSYAAKYIDADGATI---RIPADLSPAEANAVQLVA 302 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+ G++R D P R ++ EIN PG T +S++P++ +G REL+ Sbjct: 303 LRAFRALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIER 361 Query: 292 MV 293 ++ Sbjct: 362 LI 363 >gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] Length = 347 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 333 >gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 347 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333 >gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 133/261 (50%), Gaps = 15/261 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S G ++ D+ F VLHG GEDG VQ +LEL IPY G+LASA+SMDK+ +K +V Sbjct: 84 SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143 Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 S G VPV S L +N ++ +S P +KP GSS G V K D L Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208 + + H ++L+E+ + G E+ C V G +V V + ++FY ++ KY + Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S V+ ++P ++V++ A +A+ G+SR DF VF EIN PG Sbjct: 262 AESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T +S++P + G S L+ Sbjct: 321 TAISMYPMLWEARGISKSRLV 341 >gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 348 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 183 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 364 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 30/296 (10%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 S RE+++ GKA +E G V L H+ D+ F ++HG GEDG +Q Sbjct: 72 SNRELAVVPGKANQQVVETTGQGV------------LEHI--DVIFPIVHGTLGEDGCLQ 117 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HL 123 +L + ++P+ S +L SA+ MDK SK+++ G+ V P I + R + Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNR 177 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP GSS+G+ + + + + ++ +++L+E V G E+ C V+G Sbjct: 178 LGLPMFVKPANQGSSVGVSKVGSEAEYHAAVELALGFD--EKVLLESAVQGREIECAVLG 235 Query: 184 D---ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V FYSY+ KY + V+PA I + + ++RLA A + +G Sbjct: 236 NDNPIASGCGEIVVSNG-FYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLG 294 Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G++R D FL D +V EIN PG T +S++P++ AG S+ EL+ ++E Sbjct: 295 CAGLARVDVFLTD--DGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIE 348 >gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] Length = 347 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333 >gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] Length = 361 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALRYDLA--IVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] Length = 347 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333 >gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis substr. CH1] gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 348 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + +S P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 D L ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ Sbjct: 186 DNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++P + +++ A +A +AIG G+SR DF + +VF E+N Sbjct: 245 AKYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343 >gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] Length = 366 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 201 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366] gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366] Length = 328 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40 +A+L GG + E VS+ S A L+ F V +I +VDR Sbjct: 5 IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ L +K + F +HG+ GEDG +Q ++L IPYT L SA++M+K +K +V Sbjct: 65 SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124 Query: 101 SSCG-VPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + S + + T S + + PY +KP GGSS+G+ + P DL Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNH----PDDLQ 180 Query: 156 QS--SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDV---TEIAVPKSDFYSYELKYSSL 209 + ++ Q+LIE+++ G E T GV+ D + V TE+ K +F+ +E KY+ Sbjct: 181 AAIDRAFKEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAK-EFFDFEAKYTPG 239 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +T PA I + + V ++ + + CRG+ R DF+ + +++EIN PG T Sbjct: 240 VATETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQT 299 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ A AG + ++ + Sbjct: 300 ATSFIPQQVAAAGMKLNDFYTKLIRET 326 >gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] Length = 356 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 52/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VSL + ++ +A++ + + I ++ S L Sbjct: 6 ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L+H++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLIS-------PPYVIKPLKGGSSL 139 SMDK+ KQ+ ++ G+P P S L + + ++IS P +KP GSS+ Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-- 197 GI +++ + ++ ++ +L+IEQ V+ E+ V+G+ D E +P Sbjct: 186 GISKCTDSETLIHGIEEALQFDR--KLVIEQGVNAREVEVAVLGN---DTPETTLPGEVV 240 Query: 198 ---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 DFY Y+ KY +PA I +I ++ +A A +A C G+ R+DF Sbjct: 241 KDVDFYDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-D 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 K++ E N PG T S++P + G S+ EL+ ++ Sbjct: 300 DKIYINETNAMPGFTKFSMYPLLWENMGKSYSELITDLI 338 >gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1] Length = 353 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + K + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 375 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 145/258 (56%), Gaps = 15/258 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108 D+ F ++HGN GEDG +Q +L LL PY SG+L SA+S DK +K+++ GV Sbjct: 97 DVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYE 156 Query: 109 --PSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + V +++ DS + +KP GSS+GI K + S D ++ + ++ Sbjct: 157 LLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGI--HKVETSDDYDEAIRDAFRYDNK 214 Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219 +L+E+ ++G EL V+G+ + V I VP D FY+Y+ K+ + +P I Sbjct: 215 VLVEEAIEGPEELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVPVDI 274 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + KE+ ++A +++A+G +G++R DFL S + E+N PG T +S++P++ A Sbjct: 275 PEALSKELTKMALDSYRALGLKGMARIDFLVSQDSEP-YVSEVNTLPGFTNISLYPQLFA 333 Query: 280 YAGYSFRELLLWMVEDAS 297 +G S+REL+ +++ A+ Sbjct: 334 ASGISYRELIDRLIQLAN 351 >gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] Length = 384 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q + E++ +PY G+LASA MDK +K ++++ G+ Sbjct: 106 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 163 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148 PV P I ++ F ++ +++ P +KP + GSS G+ ++ + Sbjct: 164 PVAPGITLDVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGD 223 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 + L + +H ++L+EQ +D E+ C V+ + + + + P Sbjct: 224 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDD 283 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY + +++HV +PA +P + V+ A A A+ G+SR D F + Sbjct: 284 QFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD-TFVTADGE 342 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 343 VMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLIE 380 >gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 384 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q + E++ +PY G+LASA MDK +K ++++ G+ Sbjct: 106 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 163 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148 PV P I ++ F ++ +++ P +KP + GSS G+ ++ + Sbjct: 164 PVAPGITLDVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGD 223 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 + L + +H ++L+EQ +D E+ C V+ + + + + P Sbjct: 224 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDD 283 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY + +++HV +PA +P + V+ A A A+ G+SR D F + Sbjct: 284 QFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD-TFVTADGE 342 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 343 VMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLIE 380 >gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] Length = 370 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG SSE EVSL S K AL+ F+ + +D+ Sbjct: 15 VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74 Query: 42 --------------VGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 G A L+P D+ ++HG GEDG +Q +L + + Sbjct: 75 RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R +D + +I+ P +K Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+G+ +K+ L + ++H ++L+E V G E+ C V+G+A + Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELALRYDH--KVLVESAVVGREIECAVLGNAQPQASL 252 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 E+ V +FY+Y+ KY + V+PA I +Q++A A+QA+ C G++R D Sbjct: 253 CGEVVV-HDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVD 311 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F + E+N PG T +S++P++ +G + L+ ++E Sbjct: 312 -VFLTADGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 357 >gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941] gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus 2308] gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19] gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str. 870] gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str. Tulya] gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str. 86/8/59] gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str. 292] gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str. C68] gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str. 9-941] gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] Length = 353 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 347 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+ER+VS+ S ++ A+ F V Sbjct: 7 LLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSGDFIKTQEFDQTPSQDERLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K+V+ S G+ P + LV++ + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLVSKIA-EVEEKLNYPVFTKPSNMGSSVGI--SK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G D + V FY YE Sbjct: 184 SENQAELRQALDLAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDYE 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAK+ D+ +++ A A +AIG G+SR DF + +VF E+N Sbjct: 244 AKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G + EL+ +VE Sbjct: 303 TMPGFTQWSMYPLLWDNMGIPYPELIERLVE 333 >gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] Length = 350 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 172/348 (49%), Gaps = 56/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRS--------------- 41 + +L GG S E VS++S +A AL+ + V I + R+ Sbjct: 5 IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64 Query: 42 -VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L L LK D+ F VLHG GEDG +Q +L++++ P+ + + Sbjct: 65 KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTMDSQHLISPPYVIKP 132 L SA+ MDK+ K + S G P + + ++ D + + P IKP Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLD 188 GSS+G+ + + + L ++S++ ++++IE+ + EL CGV+G+ AS+ Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAASYD--NRIIIEEGIIARELECGVLGNDIPKASV- 241 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V EI +SDFY Y+ KY +S +PA++P I +++Q++A A I RG+SR DF Sbjct: 242 VGEITF-ESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDF 300 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++K+F EIN PG T S++PE+ G F EL+ ++E A Sbjct: 301 FYIEGTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348 >gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13] gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 353 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 349 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 158/334 (47%), Gaps = 48/334 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------LK 50 +L GG S+EREVS+ S ++ A+ + F V + + + L Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67 Query: 51 PDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 DLA F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI 144 K+ +K V + GVP P V F ++Q I+ P +KP GSS+GI Sbjct: 128 KLLAKHVFEAVGVPQVP--YVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFY 200 K D L S ++ + ++++IEQ VD E+ C V+G+ S DV+ V FY Sbjct: 184 KVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVGFY 242 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY +PAK+ D+ +++Q A A++A+ G+SR DF F V+ Sbjct: 243 DYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G S+ +L+ +V+ Sbjct: 302 EVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335 >gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. PCC 9511] Length = 310 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 16/261 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106 D+ F +LHG GEDG + +L+ + P GIL SAL MDK+ K++ S +P Sbjct: 53 DIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYL 112 Query: 107 ------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + N +++ + P +KP GSSLGI K I + LQ + W Sbjct: 113 DIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSEI-IKALQKA-W 170 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218 +++IE+ +D EL CG++G+ L +EI +D+Y Y+ KYS +++ ++PA Sbjct: 171 EIDSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS-MDNQIIIPAD 229 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I I ++++ +A + +A+ G +R DF + +S K+F EIN PG T S+FP + Sbjct: 230 IDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLW 289 Query: 279 AYAGYSFRELLLWMVEDASCL 299 +G + +L+ +V+ +S L Sbjct: 290 NASGLNIDQLVAKLVDISSDL 310 >gi|256826798|ref|YP_003150757.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256582941|gb|ACU94075.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 327 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/324 (30%), Positives = 162/324 (50%), Gaps = 42/324 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ER +SL SGK ALE+AG KV +D + + L +PD+A++ LHG Sbjct: 3 VAVLMGGASFERAISLDSGKRVCEALEEAGHKVVPLDTTKDLVPTLRSERPDVAYSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRS----KQVVSSCGVPVCPS 110 GEDG +Q++LE LEIP+ S + +K +RS + +SS P Sbjct: 63 KHGEDGTIQSLLEFLEIPFVGSPAAVCHDTWNKATIPLALRSWAAGQGGMSSASYP--QG 120 Query: 111 ILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + + R M + P +KP GGS+LG+ ++ + + LL + Sbjct: 121 VCLARDAMKDMGAATAIDLFEQRIPGGYPLCVKPACGGSALGVHRVECVEDMGAALLDAL 180 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN---S 211 +++ D++L+++++DG+E+ ++G+ +L EI V + Y + + S Sbjct: 181 TYD--DEVLVQEWIDGVEVAVSILGNGWDAHALPPVEIIV-RDGLYDTDARLSDEAVDYY 237 Query: 212 THVLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 T V P+ + + I E++R + ++A G + R D ++D +V LE+NV Sbjct: 238 TPVRPSSLSNNEADAQAIRAEIERASLEVYRAYGVCDMGRVDLIWDGAQARV--LEVNVS 295 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PGMT S+FP AG S +L Sbjct: 296 PGMTERSLFPVACDAAGLSMTAVL 319 >gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] Length = 361 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + H ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] Length = 354 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 58/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +AVL GG+SSE VSL S + + + F V I + R Sbjct: 6 VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65 Query: 43 -----------------GLV-------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 G+V + ++ D+ F VLHG GEDG VQ +L L IP Sbjct: 66 SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYV 129 + G+ ASA+ MDK +K + + +P ++ V+ + + ++ P Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G I D+ +++++ H +L+ E+ V+G E+ C V+G+ V Sbjct: 186 VKPANAGSSVG-ISKAADRETLYKAIETAA-THDRKLVFEEAVNGREIECAVLGNEEPVV 243 Query: 190 T---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + EI P ++FY Y KY + + V+PA +P D+ + V++ A + +GCRG++R Sbjct: 244 SCCGEIK-PCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRM 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF F V E N PG T +S++P++ G S+ ELL Sbjct: 303 DF-FALEDGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELL 344 >gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris SK11] gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 367 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 158/334 (47%), Gaps = 48/334 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------LK 50 +L GG S+EREVS+ S ++ A+ + F V + + + L Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85 Query: 51 PDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 DLA F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 86 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI 144 K+ +K V + GVP P V F ++Q I+ P +KP GSS+GI Sbjct: 146 KLLAKHVFEAVGVPQVP--YVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGI--S 201 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFY 200 K D L S ++ + ++++IEQ VD E+ C V+G+ S DV+ V FY Sbjct: 202 KVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVGFY 260 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY +PAK+ D+ +++Q A A++A+ G+SR DF F V+ Sbjct: 261 DYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVYLN 319 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G S+ +L+ +V+ Sbjct: 320 EVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 353 >gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] Length = 321 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 31/290 (10%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVL--------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 CASA+ I DR+ G +L + L+ D F VLHG GEDG +Q +L+ Sbjct: 40 CASAI---------ISPDRTHGGILKILEDGSTSLLRIDCVFPVLHGRNGEDGTIQGLLK 90 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 L IP+ L+SAL MDK + V+ + G+ + + + + +S Sbjct: 91 LAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTANWDQIQKTELPQLNEKCEQFIDKLS 150 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI +S+ + ++ H ++++E+ + G E+ C V+G+ Sbjct: 151 LPIFVKPANAGSSVGITKATDFESLREGI--KFAFTHDSKVIVEEMLSGKEVECAVLGND 208 Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + + +P ++FY Y+ KY S +S +PA + + VQ A A+QA+GC G+ Sbjct: 209 APQASALGQIIPCNEFYDYDAKYQS-DSELKIPADLDEVTTRRVQETAVRAYQALGCSGL 267 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R DF F V+ E N PG T +S++P++ Y+G + ELL +V Sbjct: 268 ARVDF-FVSEDGTVYLNEPNTLPGFTSISMYPKLWEYSGLPYSELLERLV 316 >gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] Length = 364 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 58/340 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVG----- 43 + +L GG S+E EVSLS+ +A AL ++V I +++ V Sbjct: 10 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69 Query: 44 ----------------LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L+ H ++ D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 70 QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R + + Q +I P +KP Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189 Query: 136 GSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI +D+ I + + ++++EQ + E+ V+G+ D E++V Sbjct: 190 GSSVGISRATNRDELIK---AIEVALQYDRKIVVEQGIIAREIELAVLGN---DYPEVSV 243 Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P ++FY Y+ KY ++ ++PA++P + ++ LA A +AI G+ R+DF Sbjct: 244 PGEIKPVTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADF- 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F V+ E+N PG TPVS++P + + S+ EL+ Sbjct: 303 FVTADNSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELI 342 >gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] Length = 347 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ SA+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333 >gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 353 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580] gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580] Length = 361 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL +PY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGVLASSAGMDKVVMKHLFAQAGLDQAKYV 154 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L ++ + + P +KP GSS+GI + + LD ++ + Sbjct: 155 SFLKKTWSQSKEECYAQVEGELGYPCFVKPANLGSSVGISKCRSREE--LDQAFELAFQY 212 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ V G E+ GV+G+ V PK DFY Y+ KY ++ ++PA + Sbjct: 213 DRKIVVEEGVIGREIELGVLGNDEPVCSVAGEIAPKKDFYDYKAKYEDGDTDLIIPASLT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D Y+ ++ +A A QAI G+ R+DF R V E+N PG TP S+FP + Sbjct: 273 EDEYETMRSMAVKAFQAIDGSGLVRADFFLTNEGR-VLINEVNTMPGFTPFSMFPLLWKQ 331 Query: 281 AGYSFRELLLWMV 293 +G + EL+ +V Sbjct: 332 SGVEYAELIEKLV 344 >gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 15/261 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S G ++ D+ F VLHG GEDG VQ +LEL IPY G+LASA+SMDK+ +K +V Sbjct: 84 SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143 Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 S G VPV S L +N ++ +S P +KP GSS G V K D L Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208 + + H ++L+E+ + G E+ C V G +V V + ++FY ++ KY + Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S V+ ++P ++V + A +A+ G+SR DF VF EIN PG Sbjct: 262 AESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T +S++P + G S L+ Sbjct: 321 TAISMYPMLWEARGISKSRLV 341 >gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] Length = 330 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 167/327 (51%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG + E +SL+S K L+ + + V QI +D Sbjct: 5 IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D AF ++HG GEDG +Q ++L IPYT SA++M+K +KQ+V Sbjct: 65 SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124 Query: 101 SSC-GVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 S+ + + S+ + F++DS + + P +KP GGSS+G+ K ++ LD Sbjct: 125 SAVPDLNIAKSVQL--FSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGM--SKVNEWDDLD 180 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209 ++ G ++LIE+++ G E T G V G+ + L +TEI K +F+ +E KY++ Sbjct: 181 KAVQRAFAEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTK-EFFDFEAKYTAG 239 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + V PA++ ++ + + + + + C+G+ R DF+ ++ +++E+N PG + Sbjct: 240 LTNEVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFILKD-NKDFYFIEVNTIPGQS 298 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ AG + ++++A Sbjct: 299 ENSIIPQQVRAAGLTLTYFYGNLIDEA 325 >gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 348 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142 MDK+ +KQV+++ GVP F D+ +H I S P +KP GSS+GI Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183 Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197 + S+ +DL + + ++LIEQ V E+ G++G+ + T E+ V Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY T +PAK+ + +++ A A +AIG G+SR DF F ++ Sbjct: 239 DFYDYDAKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F E+N PG T S++P + G ++ +L+ +V Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333 >gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYSDLIEHLVD 333 >gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] Length = 348 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 43/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+L+MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K ++ GVP V ++ + +++ Q L P +V KP GSS+GI K Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFV-KPANMGSSVGI--SK 184 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYE 203 + L + + ++LIEQ V E+ G++G+ ++ TE D FY Y+ Sbjct: 185 AENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA +P ++ +++ A A +A+G G++R DF F ++ E+N Sbjct: 245 AKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDF-FLAEDGTIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYTDLIKELV 333 >gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 355 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL +PY +G+LAS+ MDK+ K + + G+ Sbjct: 89 DVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGVLASSAGMDKVVMKHLFAQAGLDQAKYV 148 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L ++ + + P +KP GSS+GI + + LD ++ + Sbjct: 149 SFLKKTWSQSKEECYAQVEGELGYPCFVKPANLGSSVGISKCRSREE--LDQAFELAFQY 206 Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ V G E+ GV+G+ V PK DFY Y+ KY ++ ++PA + Sbjct: 207 DRKIVVEEGVIGREIELGVLGNDEPVCSVAGEIAPKKDFYDYKAKYEDGDTDLIIPASLT 266 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D Y+ ++ +A A QAI G+ R+DF R V E+N PG TP S+FP + Sbjct: 267 EDEYETMRSMAVKAFQAIDGSGLVRADFFLTNEGR-VLINEVNTMPGFTPFSMFPLLWKQ 325 Query: 281 AGYSFRELLLWMV 293 +G + EL+ +V Sbjct: 326 SGVEYAELIEKLV 338 >gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] Length = 377 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 141/256 (55%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F V+HGN GEDG VQ + LL+ PY SGI ASALS DK +K+++ GV P + Sbjct: 96 DFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSGITASALSFDKDYTKRILDLAGVRNTPYV 155 Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 LV NR D Q + + +KP K GSS+GI ++ +Q L + +++ + Sbjct: 156 LVTPENRDQYDWQAIENELGTTVFVKPAKQGSSVGIHKVENEQEYQAALDDAFIYDY--K 213 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+EQ ++ E+ ++G+ +++ VPK D FY YE K+ + LP + Sbjct: 214 VLVEQAINNPREVEISILGNEKPIASKLGGVRVPKGDAFYDYENKFVDASGVVFDLPVIL 273 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278 P + +E+ +A A++A+ +G++R DFL D V +L E N PG T +S++P+M Sbjct: 274 PEKLTREITEMALKAYKALDMKGLARIDFLVD--ENDVPYLGEPNTLPGFTNISLYPQMW 331 Query: 279 AYAGYSFRELLLWMVE 294 + +G + L+ ++E Sbjct: 332 SVSGIDYSTLIDKLIE 347 >gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 355 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 18/267 (6%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G + +K D AF VLHG +GEDG +Q + EL ++PY G+LASA+SMDK +K + Sbjct: 86 GAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGVLASAVSMDKFFTKIIADR 145 Query: 103 CGV------PVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 GV PV + M + + P IKP GSS G+ + + + Sbjct: 146 VGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPSNAGSSRGVSKAENREQLT 205 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS 207 L +++ H ++L+E+ + G E+ C V G+ V V + + FY +E KY Sbjct: 206 EGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASGVGEVLAAAQFYDFEAKYF 263 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + S V+ ++P D + V+R A +A+ G++R DF F V + EIN PG Sbjct: 264 NAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDF-FVTKDGDVVFNEINTMPG 322 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294 T +S++P + AG S EL+ ++E Sbjct: 323 FTAISMYPMLFEAAGISKTELVGKLIE 349 >gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41317] Length = 347 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333 >gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] Length = 361 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|258593040|emb|CBE69351.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) [NC10 bacterium 'Dutch sediment'] Length = 436 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 139/266 (52%), Gaps = 25/266 (9%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 H D+AF V+HG GEDG +Q + EL +PY +G+ ASA+ MDK+ SK V G+PV Sbjct: 144 HPTIDVAFPVIHGTHGEDGTIQGLCELANLPYVGAGVAASAVGMDKIISKLVFQGAGLPV 203 Query: 108 CPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 I V R + + ++S P V+KP GSS+GI V ++ L Sbjct: 204 VEGIGVTRRELLEDEAAVVQALERILSYPVVVKPAVAGSSVGIGV--AHDAVEALSLAKR 261 Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA--VPKSDFYSYELKY-------SS 208 + ++L+E+ V IE+ CGV+G+ +L V+E + + Y KY S+ Sbjct: 262 AMRFSCRVLVERAVQQRIEVQCGVIGNHALTVSECEELISSGEVVGYRDKYPENKKPGSA 321 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + ++PA+IP + E++ +A A ++I RGISR DFL D + K + EIN PG Sbjct: 322 DLAPSIIPARIPQALSDEIRSIAAAAFKSIDSRGISRVDFLVDSAAMKPYVNEINTMPGS 381 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 ++++ +G EL++ +VE Sbjct: 382 LSLTLWER----SGVKPAELIVRLVE 403 >gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] Length = 361 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115] Length = 353 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 15/261 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S G ++ D+ F VLHG GEDG VQ +LEL IPY G+LASA+SMDK+ +K +V Sbjct: 84 SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143 Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 S G VPV S L +N ++ +S P +KP GSS G V K D L Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208 + + H ++L+E+ + G E+ C V G +V V + ++FY ++ KY + Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S V+ ++P +E ++ A +A+ G+SR DF VF EIN PG Sbjct: 262 AESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T +S++P + G S L+ Sbjct: 321 TAISMYPMLWEARGISKSRLV 341 >gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] Length = 330 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 43/329 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A++ GG SSE +VSL S + S + + V +D+ DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+GL+Q +L+ +PY+ SG+L A++ DK Q + Sbjct: 68 SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQ----SI 150 GV V S+L+ + D + I P +KP GSS G+ +K+ +I Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKY 206 +L+S ++++E Y++G E++ GV L TE+ V ++F+ Y+ KY Sbjct: 188 RKAMLESP------EIMVESYLEGTEISIGVYKTKEKAVVLPATEV-VTSNEFFDYDAKY 240 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + PA++P D+ + V+++ + + C GI R DF+ + LE+N P Sbjct: 241 NG-QVQEITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISK-EGSISMLEVNTTP 298 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ AG S ++L +VE+ Sbjct: 299 GMTATSFIPQQVRAAGLSMTDVLTEIVEN 327 >gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330] Length = 353 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 171/342 (50%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 + + LDL ++ + ++L+EQ V E+ G++G+ + T E+ V FY Sbjct: 193 REELRASLDL----AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYD 247 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E Sbjct: 248 YEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNE 306 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 +N PG T S++P + G ++ +L L+ + E+A R Sbjct: 307 LNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 361 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 154/343 (44%), Gaps = 57/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---- 56 + ++ GG S E EVSL S +A +AL+ + V I + R+ G L+ P LA Sbjct: 6 VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRN-GQWLSGGDPLLALEQQAD 64 Query: 57 ---------------------------------------VLHGNFGEDGLVQAILELLEI 77 VLHG FGEDG +Q + E + Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPY 128 PY G+LA+++ MDK K ++ G+P P LV R +Q + P Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DAS 186 +KP GSS+GI + + + +++ ++ ++++EQ ++ E+ ++G D Sbjct: 185 FVKPANLGSSVGISKVSNRAELATGMAEAAGYDR--RIVVEQGINAREIEVAILGNDDPK 242 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V +P +DFY Y KY + +PA++ ++++ +A A +AI G++R Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF + + ++ EIN PG T +S +P++ G + ELL Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELL 345 >gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058] Length = 353 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/340 (30%), Positives = 168/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G S+ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] Length = 358 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F VLHG FGEDG +Q +LE +PY G+ ASA MDK + K ++ G+PV P Sbjct: 102 DVVFPVLHGPFGEDGTLQGLLEFANLPYVGCGVFASAACMDKTQMKVLLRGGGLPVGPYE 161 Query: 111 ILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 L +D L + P +KP +GGSSLG++ +++ + +P + + ++ ++L Sbjct: 162 ALAPGEDVDEAALRDRLGLPLFVKPARGGSSLGVVKVERWEDLPEAVAVARKYDP--KVL 219 Query: 168 IEQYVDGIELTCGVMG--DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +E + G E+ C V+ D ++ + EI VP D Y +E KY + + +PA + Sbjct: 220 VETGIAGREVECAVLEFPDGRVEASVLGEIVVP--DAYDFETKYLNNIARLQVPADVSEP 277 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + E++ LA A + + C G++R DF + E+N PG T S++P+M G Sbjct: 278 LASEIRALAVRAFETMDCSGLARVDFFIAEDGGPIIN-ELNTLPGFTTSSLYPKMWEQTG 336 Query: 283 YSFRELLLWMVEDA 296 + +LL ++E A Sbjct: 337 LDYSKLLDTLIETA 350 >gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17545] Length = 347 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S + A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] Length = 338 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 148/301 (49%), Gaps = 25/301 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------DLA 54 +A+L GG S ER +SL SG+A AL++ G + ID + LK D Sbjct: 18 IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDP------AIVSLKGMDWNGFDAV 71 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VC 108 F LHG FGEDG VQ +LE IPYT S AS L+ DK +KQ VP + Sbjct: 72 FIALHGRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELS 131 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 P + M ++ L P VIKP GSSLG+ ++++ + L + ++ + L++ Sbjct: 132 PHESFDSLLMKAKEL-GWPVVIKPASQGSSLGVSIVRQPEQ--LQSAYERARHYDEALIM 188 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E + G E T G+ D L I + +F+ + KY ++ ++ +P ++++ Sbjct: 189 EAAIVGSEWTVGLHDDEILPPICIETDR-EFFDWVAKYEDDHTRYIFDKPLPATCRQKLE 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A A+G GISR D + D S W LEIN PG+T S+ P+ A AG+S E Sbjct: 248 TACRGAVHALGVTGISRVDLMLD--SEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGE 305 Query: 288 L 288 L Sbjct: 306 L 306 >gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405] gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057] Length = 353 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 394 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 34/281 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D+ LHG FGEDG +Q + E++ +PY G+LASA MDK +K ++ + G+ Sbjct: 116 LGHI--DVVLPALHGPFGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGI 173 Query: 106 PVCPSILV--------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147 PV P I + + F D + + P +KP + GSS G+ +++ D Sbjct: 174 PVAPGITLDTRHYDASDEFATDGEEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGD 233 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196 + + +S H ++L+EQ +D E+ C V+ D T A+P Sbjct: 234 AAALAAAVFEAS-RHDWRVLVEQGIDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGD 292 Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY ++ KY ++H +PAKI D+ V+ A A A+ G+SR D F Sbjct: 293 DQFYDFDSKYMDSQASHTEIPAKIGDDLIARVRETAVRAFDAVDGMGLSRVD-TFVTADG 351 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S+FP+ G FR ++ ++E A Sbjct: 352 DVLVNEINTLPGCTSISMFPQAWEAMGIPFRTVVTDLIEGA 392 >gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR] gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR] Length = 365 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E EVSL+S + AL +++ I + R Sbjct: 6 VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65 Query: 42 -------VGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 G L +L+ D+ VLHG FGEDG +Q +LEL IPY Sbjct: 66 AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKP 132 G+ AS++ MDK K + + +P + L + D + + P +KP Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190 GSS+GI + + + ++ ++++E+ ++G E+ V+G+ + + Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLACLYDR--KVVVEENINGREIEVAVLGNDEPEASIA 243 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP +DFY YE KY S S +PA + EV++LA A +AI G+SR DF Sbjct: 244 GEI-VPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ EIN PG T +S++P++ A G + +LL ++E Sbjct: 303 IKKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIE 347 >gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72] Length = 353 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+ERE+S+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENRAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G++R DF + S +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTEDS-QVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G S+ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 15/261 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S G ++ D+ F VLHG GEDG VQ +LEL IPY G+LASA+SMDK+ +K +V Sbjct: 84 SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143 Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 S G VPV S L +N ++ +S P +KP GSS G V K D L Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208 + + H ++L+E+ + G E+ C V G +V V + ++FY ++ KY + Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S V+ ++P +++ + A +A+ G+SR DF VF EIN PG Sbjct: 262 AESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T +S++P + G S L+ Sbjct: 321 TAISMYPMLWEARGISKSRLV 341 >gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 361 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + S P +KP GSS+GI K + + +++ ++ Sbjct: 155 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 367 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 101 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLTQAKYA 160 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + S P +KP GSS+GI K + + +++ ++ Sbjct: 161 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 220 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 221 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 278 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 279 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 337 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 338 TGLPYPELI 346 >gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] Length = 361 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVVFPLLHGPNGEDGTIQGLLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLSQAKYA 154 Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L ++ S+ + P +KP GSS+GI + + L+ ++ + Sbjct: 155 AFLKKDWSRSSEECCEQVEKELGYPCFVKPANLGSSVGISKCRSREE--LEKAFELAFQY 212 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++++E+ V G E+ GV+G+ V EIA PK+DFY Y+ KY ++ ++PA++ Sbjct: 213 DRKVVVEEGVIGREIEIGVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTDLIIPAEV 271 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 D Y ++ +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 272 TDDQYAKISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWK 330 Query: 280 YAGYSFRELLLWMVE 294 AG + +L+ +V+ Sbjct: 331 EAGIEYADLIEQLVD 345 >gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 361 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis AD011] gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis V9] Length = 378 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 34/281 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D+ LHG FGEDG +Q + E++ +PY G+LASA MDK +K ++ + G+ Sbjct: 100 LGHI--DVVLPALHGPFGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGI 157 Query: 106 PVCPSILV--------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147 PV P I + + F D + + P +KP + GSS G+ +++ D Sbjct: 158 PVAPGITLDTRHYDASDEFATDGEEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGD 217 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196 + + +S H ++L+EQ +D E+ C V+ D T A+P Sbjct: 218 AAALAAAVFEAS-RHDWRVLVEQGIDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGD 276 Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY ++ KY ++H +PAKI D+ V+ A A A+ G+SR D F Sbjct: 277 DQFYDFDSKYMDSQASHTEIPAKIGDDLIARVRETAVRAFDAVDGMGLSRVD-TFVTADG 335 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S+FP+ G FR ++ ++E A Sbjct: 336 DVLVNEINTLPGCTSISMFPQAWEAMGIPFRTVVTDLIEGA 376 >gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 349 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 139/262 (53%), Gaps = 13/262 (4%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + ++K + F ++HG +GEDG +Q + L ++P+ G+L+SA+SMDK +K V G+ Sbjct: 90 IVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFVGCGVLSSAISMDKSFTKIAVEKTGI 149 Query: 106 PVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +LV N+ + PY +KP GSS+GI + + + L + Sbjct: 150 RQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKPANAGSSVGINKVHNKRELEHALRVA 209 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL 215 + + ++L+E+ + G E+ V+G+ L ++ + + ++FY ++ KY++ S V+ Sbjct: 210 AKEDA--KILVEETIIGREVEVAVLGNEELQISGVGEILAAAEFYDFDAKYNNAESKTVI 267 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A++P +I + ++ A ++A+ +G+SR DF +F EIN PG T +S++P Sbjct: 268 CAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFVTETGDMIFN-EINTMPGFTKISMYP 326 Query: 276 EMAAYAGYSFRELLLWMVEDAS 297 + G S + L+ ++ AS Sbjct: 327 MLFEDFGISIKNLITELINLAS 348 >gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 347 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIEHLVD 333 >gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 364 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 98 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + S P +KP GSS+GI K + + +++ ++ Sbjct: 158 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 217 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 276 GEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 335 TGLPYPELI 343 >gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetaseA gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] Length = 353 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345 >gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLTQAKYA 154 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + S P +KP GSS+GI K + + +++ ++ Sbjct: 155 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris MG1363] gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 349 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 159/336 (47%), Gaps = 48/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ + F V + + + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKL 65 Query: 49 LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L DLA F VLHG GEDG +Q LE+L + Y IL+++ + Sbjct: 66 LTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142 MDK+ +K V + GVP P V F ++Q I+ P +KP GSS+GI Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGI- 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198 K D L S ++ + ++++IEQ VD E+ C V+G+ S DV+ V Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVG 240 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y KY +PAK+ D+ +++Q A A++A+ G+SR DF F V+ Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVY 299 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G S+ +L+ +V+ Sbjct: 300 LNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335 >gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M] gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M] Length = 366 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 201 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 358 >gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987] gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R] gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316] gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909] gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R] gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316] gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909] gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] Length = 348 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142 MDK+ +KQV+++ GVP F D +H I S P +KP GSS+GI Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183 Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197 + S+ +DL + + ++LIEQ V E+ G++G+ + T E+ V Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY T +PAK+ + +++ A A +AIG G+SR DF F ++ Sbjct: 239 DFYDYDAKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F E+N PG T S++P + G ++ +L+ +V Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333 >gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3 str. Ether] gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] Length = 353 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + G+S+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187 Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193 G+ +V + D + S + + D+LL E+++ E+ CGV+ D +L V+ Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243 Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP FYSY+ KY + T + +PA++P + E++ +A A + +GC ++R DF F Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2] gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 341 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 160/336 (47%), Gaps = 47/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32 +A++ GG S E VS+ S A L E + Sbjct: 6 IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65 Query: 33 VSQIDVDRSV-GLVL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + + DRSV GL++ + DL F VLHG FGEDG +Q +LEL IPY I Sbjct: 66 PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SAL MDK + V G+ + + T+D++ L P YV KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYV-KPARSGSSFGVTKV 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFY 200 + + + L ++ + + ++LIE+ V G E+ C + G+ + +V +I + F Sbjct: 185 CRQEEL-LSAVEIAR-QYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFR 242 Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E + S NST ++PA I + VQ A ++A+GCRG++R D +F V Sbjct: 243 IHQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVD-MFLKEDGTV 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PGMT S FP M A AG F E++ +V Sbjct: 302 ILNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLV 337 >gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] Length = 367 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 63/350 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+E EVSL S K + L+ F V I ++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65 Query: 40 --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 RS+ +V L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + + + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186 P GSS+GI + + LD ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFYAALDF----AFLFDVKVLIESAVKGREIECAVLGNEQPLA 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 EI + S FY+Y KY N V+ PA + + ++++++A A+QA+ C G+SR Sbjct: 242 SPCGEIVLHDS-FYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSR 300 Query: 246 SD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D FL D + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 301 VDVFLTD--TNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348 >gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] Length = 355 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 18/262 (6%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G + +K D AF VLHG +GEDG +Q + EL ++PY G+LASA+SMDK +K + Sbjct: 86 GTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGVLASAVSMDKFFTKIIADR 145 Query: 103 CGV------PVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 GV PV + M + + P IKP GSS G+ + + + Sbjct: 146 VGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPSNAGSSRGVSKAENREQLT 205 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS 207 L +++ H ++L+E+ + G E+ C V G+ V V + ++FY +E KY Sbjct: 206 EGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASGVGEVLAAAEFYDFEAKYF 263 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + S V+ ++P D + V+R A +A+ G++R DF F V + EIN PG Sbjct: 264 NAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDF-FVTKDGDVVFNEINTMPG 322 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 T +S++P + AG S EL+ Sbjct: 323 FTAISMYPMLFEAAGISKTELV 344 >gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 353 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 372 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 32 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 91 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 92 NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 151 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 152 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 209 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 210 ENHEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 268 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+N Sbjct: 269 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 327 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 328 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 358 >gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A++ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP G S+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR +F + ++F E+N Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333 >gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 171/344 (49%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIEEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFL ++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 303 KSGVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] Length = 324 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 161/318 (50%), Gaps = 36/318 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG SSE ++S+ SG L+ + ++ + + L Sbjct: 5 IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 A + D FN +HG GE+G + A L+ + +T + AL+ +K + VV Sbjct: 65 SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124 Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGI-IVIKKDQSIPLDLL 155 + G+ ++ +N+ +D +I+ P IKP K GSS GI V ++ +P L Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAIAL 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++LIE ++ GIE++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 185 ---AYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEI-VSENDFFDYDAKYNG-KS 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + K+V+ A ++ + G SRS+F+F ++ + ++LEIN+ PG+T Sbjct: 240 KEITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQ 297 Query: 272 SIFPEMAAYAGYSFRELL 289 SI P+ A AG S +L Sbjct: 298 SILPQQALAAGISLADLF 315 >gi|323453883|gb|EGB09754.1| hypothetical protein AURANDRAFT_24617 [Aureococcus anophagefferens] Length = 317 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 153/301 (50%), Gaps = 20/301 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER++SL G A AL G++V+ +D+ ++ LV A + D+ F LHG Sbjct: 11 IAVLCGGTSAERDLSLKGGADVAEALRARGYRVTIVDLTPALDLVAALRRVDVVFVCLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE+L+IPYT SG++ ++ +DK+R+K+ + C PV ++ ++ D Sbjct: 71 PLGEDGSVQGFLEVLKIPYTFSGVVTQSVCVDKVRTKRYLRGCE-PV--RLIPDQLLADG 127 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L + PP ++K + GSS G V K D + ++ +++ G + L+EQ++ G++L Sbjct: 128 APLRVPPPCMVKDPQSGSSRG--VWKCDTAD--EVRAAAAQCAGPRCLVEQFISGVDLVV 183 Query: 180 GVMGDASLDVTEIAV--------PKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEV 227 V +L E K+D + + S + + PA +P + E Sbjct: 184 CVNDGEALPAMEFKTDKDWQDLASKNDLWGWAGADGSDGARAAIEKICPATLPAAVVDEA 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + A + + G +F V+++E++ P MT S+ A AG SF + Sbjct: 244 RDTALAIYDFLEVEGAMNFEFRVTVDGAAVYFVEVSSVPAMTRASVHACCAEAAGLSFED 303 Query: 288 L 288 + Sbjct: 304 V 304 >gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 361 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVP-------VCPSILVNRFTM--DSQHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ + + NR T + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055] Length = 377 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 138/253 (54%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELLLWMV 293 G + EL+ ++ Sbjct: 332 TGLPYPELIEELI 344 >gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187] gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 361 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 337 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++MGG S E VSL S + A+ L + + +DR Sbjct: 16 IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + + FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 76 SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +KP K GSSLG K ++ L Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLG--ASKVNEEAALKEAI 193 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 194 DKAFAVDDEILIESFLKGTEISIGVIKYRGVIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 251 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 252 EITPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 309 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S +L +E Sbjct: 310 LLPQQAKVAGISLADLFESEIE 331 >gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1] gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 361 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEIL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ S + + + D + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9301] gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301] Length = 355 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQ----IDVDRSVGLVLA 47 + ++ GG S+E EVS+SS K A + F +++ +D D S ++ Sbjct: 9 IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG + ++ + P Sbjct: 69 EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIK 131 GI+ SAL MDK+ K + S+ +P ++ ++ + + + P +K Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI +K + I L L +W ++LIE+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVKNESEILLAL--EKAWGIDPRILIEEGLEVREIECGIIGNSKLITSE 246 Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +SD+Y Y+ KY S N+ ++PA+I I E++ +A + +A+ G +R DF Sbjct: 247 IGEVNYESDWYDYDSKYHS-NNKIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G +L+ +V+ Sbjct: 306 LEKSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350 >gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] Length = 347 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 45/332 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K+V+ S G+ P + + + + L+ P + KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFT-KPSNMGSSVGI--SK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y Sbjct: 184 SENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T S++P + G S+ +L+ +V+ Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333 >gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 347 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+ER+VS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K D L + + ++LIE V+ E+ G++G+A + T E+ V FY Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA I I +E++ A A +AIG G+SR DF V+ E Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +N PG T S++P + G ++ +L+ +VE Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334 >gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7] Length = 343 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 55/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 + VL GGIS+ER+VSL SG AL+ G +V +DV S Sbjct: 3 IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62 Query: 42 VGLV---------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 VG + + L+PD + F LHG GE+G +QA +L Sbjct: 63 VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKP 132 I YT + ++SA+ M+K SK + ++ GVP I R + PY V+K Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGI---RLKKGETPDVKVPYPCVVKA 179 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G+++ D+ ++ + ++++IEQY+ G E + GV+ + + EI Sbjct: 180 CCGGSSVGVVMANNDEE--YAAALEEAFKYDEEVVIEQYIKGREFSVGVVDGKAYPIIEI 237 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A P FY Y+ KY + ++ PA++ + +Q A A + + + +R DF+ D Sbjct: 238 A-PIHGFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDE 296 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE N PGMTP S+ P+ A G + +L +++ Sbjct: 297 -KEDFYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337 >gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51] gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 353 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 DL F VLHG FGEDG VQ +LEL IPY I +SAL MDK + V + G+ Sbjct: 92 DLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIPSSALCMDKSLAYIVAGNAGIATPKFR 151 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D++ L P YV KP + GSS G+ + + + + + +S ++ ++LIE+ Sbjct: 152 TVTAKEAIDAERLAYPVYV-KPARSGSSFGVTKVCRQEELLSAVAIASQYD--SKVLIEE 208 Query: 171 YVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDI 223 V G E+ C + G+ + +V +I + F + E + S NST ++PA I Sbjct: 209 AVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRIHQENEPEKGSENSTLIVPADISPQA 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 VQ A ++A+GC+G++R D +F +V E+N PGMT S FP M A AG Sbjct: 269 RSRVQETAKAIYRALGCKGLARVD-MFLKEDGEVILNEVNTLPGMTSYSRFPRMMAAAGL 327 Query: 284 SFRELLLWMV 293 F E++ +V Sbjct: 328 PFAEVIDRLV 337 >gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] Length = 310 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG L +V +D S L D FN+LHG Sbjct: 11 VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNSNWLEQLD-GVDFVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ +L L +P + SG+L +AL MDK+RSK + G+PV + ++ T D Sbjct: 70 GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVLASDT-DF 128 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + +I +KP GSS+G+ + + + +S + + E+ + G E T Sbjct: 129 EAVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSASEYQ--GPVFAERRIVGEEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + + FY Y KY S ++ + P + + E+ LA A +AI Sbjct: 187 VAILGDRALPAIRLQAHEI-FYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAI 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C R DF+ D + + LE N PGMT S+ P A AG S + LL ++E Sbjct: 246 DCAVWGRVDFMVDQQGQP-YILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIE 300 >gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] Length = 357 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL G ISSE EVSL S + + + V + + Sbjct: 6 VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65 Query: 39 ------------DRSVGLVLAHL----KP---DLAFNVLHGNFGEDGLVQAILELLEIPY 79 DR G +L L +P D F VLHG EDG +Q +LE+ + Y Sbjct: 66 QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISP----PYVIK 131 G+LASA MDK + ++ + G+ + P ++ R + +++ +++ P IK Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ K + L S ++ +++ E V G EL C V+G+ D E Sbjct: 186 PANTGSSVGVGKAKDAGGLCAAL--SEAFRFDRKVIAETAVVGDELECAVLGN--FDRAE 241 Query: 192 IA-----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + VP+ +FY Y KY ++ +PA+I + + +++ A A A+GC G+SR Sbjct: 242 ASCVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRV 301 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF R V EIN PG T +S++P++ G + EL+ ++E Sbjct: 302 DFFLTREGRVVLN-EINTLPGFTSISMYPKLFEAVGLPYPELISRLIE 348 >gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L] gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205] Length = 364 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG---------FKVSQ---------------- 35 + ++ GG++ E VS+ S A+AL F + Q Sbjct: 8 LGLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAK 67 Query: 36 -IDVDRSVGLVLAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +RS L A L+P +L VLHG GEDG +Q + L+++P+ S Sbjct: 68 GTPAERSE-LPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGS 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPL 133 G+L SA+ MDK K ++ G+P P V+ ++ Q + P IKP Sbjct: 127 GVLGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 GSS+GI + L ++ H ++++EQ + EL C V+G + + Sbjct: 187 NLGSSVGISKASNRAELMQGLALAA--QHDPRMVVEQGIQARELECAVLGGQQMRSSVLG 244 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI +D+Y Y+ KYS S V+PA++P + + + +A A +A+G G++R DF + Sbjct: 245 EICF-DADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFY 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S ++ EIN PG T S++P + A G EL+ +V+ Sbjct: 304 EQASGALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQ 347 >gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2] Length = 371 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 23/256 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q + EL + + SG+ ASA SMDK +K +++ G+P CP Sbjct: 106 DVYFPLLHGQYGEDGTLQGLFELSDTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWE 165 Query: 112 LVNRFTM------DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 LV TM ++Q I+ P +KP + GSS+G+ ++ + LD S++ H Sbjct: 166 LVTE-TMWEADQAEAQDRITGLGLPVFVKPARAGSSMGVSRVESAEG--LDQALRSAFEH 222 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVL 215 ++++E V G E+ C V+G ++ P + FY +E KY +L + Sbjct: 223 DSKVIVEPQVVGREIECAVLGSVHDREVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLT 282 Query: 216 -PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273 PA++ +Q L+ + C G+SR D F+ D + +V EIN PG TP S Sbjct: 283 CPARVDETTTARIQELSAQVFRLFDCTGLSRVDTFVTD--AGEVLINEINTLPGFTPTSA 340 Query: 274 FPEMAAYAGYSFRELL 289 +P M + +G + L+ Sbjct: 341 YPFMWSKSGIEYPALI 356 >gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLAQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L +T + + P +KP GSS+GI + + + ++ + Sbjct: 155 AFLKKDWTRSPEESCEQVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ ++G E+ GV+G D V PK+DFY Y+ KY ++ ++PA + Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAHVT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y ++ +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 273 DEEYAKISEMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331 Query: 281 AGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 332 AGVEYADLIEQLVE 345 >gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ ++ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 TDVLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS + + +PA + + ++ AFLA++ + RG++R DF + Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al Hakam] gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 367 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 101 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 160 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 161 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 220 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 221 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 278 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 279 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 337 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 338 TGLPYPELI 346 >gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915] Length = 346 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 47/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E +S+ S K A AL+ ++ I + R L Sbjct: 6 IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65 Query: 47 -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 A L PD + VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V+SS G+ +V M D++ L+ P +V KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFV-KPARSGSSFGVTKV 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200 + + + ++ ++ ++LIE V G E+ C ++G+ + +V +A+ F Sbjct: 185 TGPEQLRSAVAEARQYDS--KVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFR 242 Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S NS ++PA IP + VQ A ++A+GCRG++R D +F V Sbjct: 243 IHQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVD-MFLKEDGVV 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M A AG S E++ MV Sbjct: 302 VLNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMV 337 >gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3] gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 364 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG SSE EVSL S K AL F+ + +D+ Sbjct: 6 VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65 Query: 42 ------VGLVLA--------HLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 G LA L+P D+ ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R +D +I+ P +K Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187 P GSS+G+ +K L + ++H ++L+E V G E+ C V+G+ ASL Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELALRYDH--KVLVESAVVGREIECAVLGNTLPQASL 243 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 E+ V +FY+Y+ KY + + V+PA I D +Q++A A+QA+ C G++R Sbjct: 244 -CGEVVV-HDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARV 301 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D +F ++ E+N PG T +S++P++ +G + L+ ++E Sbjct: 302 D-VFLTADGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 348 >gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus] Length = 345 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 45/324 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + ++ GG+S E VS+ S + A +L+ ++ I + Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 39 ------DRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DR+V GL++ ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYS 201 +Q + L + ++ ++LIE+ V G E+ C +MG+ + +V +A+ F Sbjct: 186 TEQELKAALETAREFDS--KVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST + PA IP + VQ A ++A+GCRGI+R D +F V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVD-MFLKEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAG 282 E+N PG+T S +P M A AG Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAG 326 >gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] Length = 331 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR-FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 G+ V SIL+ R D + + I P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++IE ++DG E++ G+ A L TE+ V ++F+ Y+ KY+ Sbjct: 188 ---AFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTTNEFFDYDAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR-KVFWLEINVQPGM 268 + PA++ + +EV + + + GI R D++ D + KV LEIN PGM Sbjct: 243 QEITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L +VE+ Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 350 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 142/253 (56%), Gaps = 20/253 (7%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 LK D+ F++LHG+ GE+G Q + + P+ S +L+S++ MDK SK+++S+ G+ V Sbjct: 95 LKIDVIFSILHGSNGENGAFQGLFNTIYTPFVGSNVLSSSICMDKDISKRILSTFGISVV 154 Query: 109 PSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQSSS 159 PSI + + + I P IKP GSS G+ V I +SI + L S Sbjct: 155 PSITLYYENYKKKINKIINNIKFPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYS-- 212 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLP 216 ++LIE ++ G E+ GV+G+ ++ + EI K FY Y+ KY S + ++P Sbjct: 213 ----KKILIEPFIQGREIEVGVLGNRNVISSVCGEIKFKKI-FYDYKEKYISKKTKIIIP 267 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 AKI +I +++++A LA ++ C ++R DF F ++K+F EIN PG T SI+P+ Sbjct: 268 AKISNEISNKIKKIAKLAFISLECSIMARVDF-FLTKNKKIFLNEINTIPGFTKNSIYPK 326 Query: 277 MAAYAGYSFRELL 289 + + +G F+ L+ Sbjct: 327 LWSKSGLDFKSLI 339 >gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 361 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 55/339 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPD----- 52 VL GG+S E ++S+ S +AL +A + V +++ LV L D Sbjct: 5 VLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLLQL 64 Query: 53 -------------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + F VLHG GEDG +Q LE+L +PY Sbjct: 65 KQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKP 132 +G+ ASA MDK+ SKQ+ G+P P + ++ + D I P+ +KP Sbjct: 125 AGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ ++ Q + + + ++ ++++EQ + E V+G+ + + + Sbjct: 185 ANMGSSVGVSRVENSQELIKAVDVALEFDR--RIVVEQGISANECEVAVLGNDDIHASVV 242 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V SDFY Y+ KY + +PA +P + +++ A A++A+ G++R+DF F Sbjct: 243 GRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADF-F 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ E+N PG T S++P + G ++R+L+ Sbjct: 302 VTANYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLI 340 >gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 788 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/324 (30%), Positives = 154/324 (47%), Gaps = 44/324 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+E EVSL+S + +L+ ++ + + + VL + Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K DL F +LHG FGEDG +Q LE+L PY +SA+ MDK +K+++ Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574 Query: 104 GVPVCPSILV------NRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ I NR D H I P +KP+ GSS+G+ + + LD Sbjct: 575 GIQTSSFIAFSETDWKNR-AKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETE--LD 631 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS------YELKYS 207 +++ +L+E + G E+ V+G+ + V +P + +S Y KYS Sbjct: 632 AAIRNAFAFDPVILVENEIAGREIEFAVLGNDQITV----LPPGEVFSAGKIHDYRGKYS 687 Query: 208 SLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQ 265 N+T P A +P +E + +A A+QA C+G++R DF D FW EIN Sbjct: 688 RDNATPSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD--QSGSFWFNEINPI 745 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PG TP S++P+M G+S EL+ Sbjct: 746 PGFTPFSLYPQMCEANGFSNEELI 769 >gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 348 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 68 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 186 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 245 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G S+ +L L+ + E+A R Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343 >gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] Length = 302 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 161/299 (53%), Gaps = 12/299 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID----VDRSVGLVLAHLKPDLAFNVL 58 +L GG SSEREVSL S + SA+ + G V+ +D D+ +V K D+AF +L Sbjct: 5 LLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDK---IVEVAEKQDVAFILL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117 HG+ GEDG++QA+LE + PY + S L++ K +K + G+ S+ + + Sbjct: 62 HGSPGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPE 121 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + ++ P +K GGSS+ + ++ + L + + +N G+++L+E+ + G E+ Sbjct: 122 VTWEPGLNYPIFVKSNIGGSSVNVHLVTNYEE--LFIAMEALFNAGEEVLLEEAIIGQEV 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TCGV+ D +L I + F+ Y KY+ + + PA + + K +Q A AH Sbjct: 180 TCGVIDDQALPPILIR-SQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNT 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +G SR+DF+ +F LE+N PGM+ S+ P AA G +F EL+ +++ A Sbjct: 239 LNLQGCSRADFILRD-DELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296 >gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36] gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36] Length = 353 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 166/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------S 34 +L GG S+EREVS+ S ++ A+ F V + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 35 QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 VD S + + + D A F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G S+ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 370 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 26/258 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F +LHG FGEDG +Q +LE+ + Y SGI ASA+ MDK K V G V P Sbjct: 104 DVVFPLLHGPFGEDGSIQGMLEMAGVSYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYE 163 Query: 111 ILVNR-FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ N+ + DS+ + P +KP + GSS+GI K D L + Sbjct: 164 VITNKQWLRDSEAAMKRCDNLQYPLFVKPARAGSSVGI--TKVDDPSELRAAIEIARAED 221 Query: 164 DQLLIEQYVDGIELTCGVM-------GDASLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214 +++IEQ + G E+ CGV+ ASL EIAV + FY +E KY + + Sbjct: 222 PKVIIEQGIVGREIECGVLEGRGSGPSRASLP-GEIAVADNLHTFYDFEAKYVDGAAAEL 280 Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPV 271 PA + + E++ LA A AI G+SR DF + P W+ EIN PG TP Sbjct: 281 SCPANLSDEATLEIRELAVKAFDAIDAEGLSRVDFFYTPEGD---WIINEINTMPGFTPS 337 Query: 272 SIFPEMAAYAGYSFRELL 289 S++P+M A G +REL+ Sbjct: 338 SMYPQMWAKTGIEYRELI 355 >gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 353 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 102/340 (30%), Positives = 166/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G S+ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31] gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31] Length = 356 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 170/342 (49%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL----------------- 44 ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61 Query: 45 VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 62 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + +D + + + P ++KP GSS+G Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197 I V + I + ++ ++ ++IE++++ E+ C ++G+ + + E+ V Sbjct: 182 INVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239 Query: 198 DFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS + + +PA + + ++ AFL ++ + RG++R DF + S Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341 >gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 361 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESSVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] Length = 347 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID ++ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENHEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ EL+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333 >gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150] Length = 353 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49] Length = 353 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 163/330 (49%), Gaps = 43/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLV 338 >gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 364 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 98 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + + + S P +KP GSS+GI K + + +++ ++ Sbjct: 158 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 217 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 276 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 335 TGLPYPELI 343 >gi|222099401|ref|YP_002533969.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571791|gb|ACM22603.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 251 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 19/253 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL FNVLHG FGEDG +Q+IL+ L + YT S +S L DK+ + + + + Sbjct: 5 DLVFNVLHGTFGEDGSLQSILDFLGVRYTGSDAFSSMLCFDKLLAYRFLKDF-------V 57 Query: 112 LVNRFTMDSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 + F +H+ S P V+KP + GSS+G+ + + D+ L + +G ++ Sbjct: 58 KIPNFVEVKEHIDSSPVGYPCVVKPRREGSSIGVFICESDEEFQRALKEDLPL-YG-SVI 115 Query: 168 IEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +++Y+ G E+T ++ G L + E+ + FY Y KY+ + +LPA + + Sbjct: 116 VQEYIPGREMTVSIIETEEGFKVLPILELRPKRRKFYDYIAKYTEGETEFLLPAPLKPEE 175 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + V+ A A GCRG R D +F + + F+LEIN PG+T +S P A AG Sbjct: 176 EQRVKETALRAFTEAGCRGFGRVDGIF--FNGEFFFLEINTVPGLTELSDLPASAKAAGI 233 Query: 284 SFRELLLWMVEDA 296 F EL+ +++ A Sbjct: 234 EFEELIDIIIKSA 246 >gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] Length = 377 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 62/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 35 --------QIDVDRSVGLVLA--HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +D+DR + ++A L+ D + V+HGN GEDG VQ + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVN----------RFTMDSQHLISPPYVIKPL 133 I ASALS DK +K++++ G+ P +L+ R + +LI IKP Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLI----FIKPA 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDV 189 + GSS+GI + + L + ++ ++L E+ +D E+ ++G+ + + Sbjct: 183 RQGSSVGIHRVTNAEEYAAALKDAFKYDF--KVLAEKGLDRPQEIEISILGNEHPVASKL 240 Query: 190 TEIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + VPK D FY YE K+ + LP K+P + E+ +A A++ +G +G+SR D Sbjct: 241 GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRID 300 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D S + +L E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 301 FLVD--SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346 >gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 15/261 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S G ++ D+ F VLHG GEDG VQ +LEL IPY G+LASA+SMDK+ +K +V Sbjct: 84 SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143 Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 S G VPV S L +N ++ +S P +KP GSS G V K D L Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208 + + H ++L+E+ + G E+ C V G +V V + ++FY ++ KY + Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S V+ ++P ++ ++ A +A+ G+SR DF VF EIN PG Sbjct: 262 AESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T +S++P + G S L+ Sbjct: 321 TAISMYPMLWEARGISKSRLV 341 >gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] Length = 332 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/328 (28%), Positives = 156/328 (47%), Gaps = 38/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53 +A++ GG SSE +VS+ S + S + + + +DV D G + A K D Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67 Query: 54 AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +F V +HG GE+G++Q EL+ +PY+ SG+L AL+ DK + Sbjct: 68 SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 G+ V SILV R + + P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLN 210 ++ ++++IE+Y+ G+E++ G G TE+ V K++F+ Y KY+ Sbjct: 188 ---AFMESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEV-VTKNEFFDYNAKYNG-E 242 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267 + PA++ + ++V L + + GI R D++ D V LEIN PG Sbjct: 243 VQEITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPG 302 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MTP S P+ AG +++L +VE+ Sbjct: 303 MTPTSFIPQQVRAAGLEMKDVLTDIVEN 330 >gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 364 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 98 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + + + S P +KP GSS+GI K + + +++ ++ Sbjct: 158 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 217 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 276 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 335 TGLPYPELI 343 >gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae 3841] gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv. viciae 3841] Length = 358 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 144/258 (55%), Gaps = 18/258 (6%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG +GEDG VQ E+ +P GIL SA ++DK +K+++ + G+PV Sbjct: 96 KVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVAR 155 Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 ++ ++ + S + + P IKP + GSS+G+ + Q + L + ++ H Sbjct: 156 AVTIHEGAVPSLAALEGELGLPLFIKPARQGSSVGVAKVHASQEVAPALAE--AFRHDRT 213 Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY-SSLNSTHVLPAK 218 LL E++V G E+ V+ DA+ ++ EI +S FYSY+ KY + +PA+ Sbjct: 214 LLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVPAESHGFYSYDAKYIDEKGAALKVPAE 273 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPE 276 +P ++ ++ +A A +A+GC G++R DF L+ + +L EIN PG T +S++ + Sbjct: 274 LPQEVETAMRDVAAKAFRAVGCDGMARIDFF---LTDDMQFLVNEINTIPGFTDISMYSK 330 Query: 277 MAAYAGYSFRELLLWMVE 294 A +G ++ E++ +V+ Sbjct: 331 AMAASGVTYAEIIDRLVD 348 >gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA] gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 15/242 (6%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +K D+ F +LHG +GEDG +Q +LEL IPY G+LASA+SMDK+ +K +VS G+ Sbjct: 89 VEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGCGVLASAVSMDKLYTKIIVSDLGI 148 Query: 106 PVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V R + ++ P IKP GSS GI Q + LL++ Sbjct: 149 RQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSNAGSSRGISKAGNRQELEAGLLEA 208 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTH 213 + H ++L+E+ + G E+ C V G S + V + ++FY ++ KY + S Sbjct: 209 A--RHDRKILVEETIVGREVECAVFGGGSHGIEASGVGEILAAAEFYDFDAKYFNEESRT 266 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 V +P ++V+R A +A+ G++R DF VF EIN PG T +S+ Sbjct: 267 VTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFVKDNGEVVF-NEINTMPGFTAISM 325 Query: 274 FP 275 +P Sbjct: 326 YP 327 >gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 374 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 20/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG FGEDG +Q +LEL E+PY G+ ASA+ MDK K S G+ V Sbjct: 108 DVVFPLIHGPFGEDGTIQGLLELAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYE 167 Query: 112 LVN--RFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V ++T + + + P +KP + GSS GI + K + + + ++ H Sbjct: 168 VVTDRQWTHEREESLKRITALGYPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHD 225 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNSTHV- 214 ++++E + G E+ CGV+ ++ EI V D FY ++ KY S +S Sbjct: 226 AKIIVEAGIVGREIECGVLDGHHGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTR 285 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA +P D+ + ++ LA A A+ G+SR+DF + P R V E+N PG TP+S++ Sbjct: 286 CPADLPKDMQERLRALAVKAFLALDGEGLSRADFFYTPDGRLVIN-EVNTMPGFTPISMY 344 Query: 275 PEMAAYAGYSFRELL 289 M G S+ EL+ Sbjct: 345 KTMWENTGISYTELI 359 >gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG VQ + EL +IPY G+LASA+SMDK+ +K +V G+ Sbjct: 100 KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 159 Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + V D +HL I P +KP GSS G V K + L+ + Sbjct: 160 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 215 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214 H +L E+ + G E+ C V+GD S V EI A ++ FY ++ KY++ S V Sbjct: 216 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 275 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 + ++P + ++++ A +A+ G+SR DF + R VF EIN PG T +S++ Sbjct: 276 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 334 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P + G ELL +++ A Sbjct: 335 PMLWKACGLDIPELLDTLIDQA 356 >gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 353 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG VQ + EL +IPY G+LASA+SMDK+ +K +V G+ Sbjct: 92 KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 151 Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + V D +HL I P +KP GSS G V K + L+ + Sbjct: 152 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 207 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214 H +L E+ + G E+ C V+GD S V EI A ++ FY ++ KY++ S V Sbjct: 208 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 267 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 + ++P + ++++ A +A+ G+SR DF + R VF EIN PG T +S++ Sbjct: 268 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 326 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P + G ELL +++ A Sbjct: 327 PMLWKACGLDIPELLDTLIDQA 348 >gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678] Length = 353 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/342 (29%), Positives = 165/342 (48%), Gaps = 46/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 11 LILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKL 70 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+ Sbjct: 71 MTNATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLA 130 Query: 91 MDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI Sbjct: 131 MDKITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--S 188 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY Sbjct: 189 KSENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYD 247 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E Sbjct: 248 YEAKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNE 306 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 +N PG T S++P + G S+ +L L+ + E+A R Sbjct: 307 LNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] Length = 361 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F VLHG GEDG VQ + EL +IPY G+LASA+SMDK+ +K +V G+ Sbjct: 100 KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 159 Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + V D +HL I P +KP GSS G V K + L+ + Sbjct: 160 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 215 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214 H +L E+ + G E+ C V+GD S V EI A ++ FY ++ KY++ S V Sbjct: 216 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 275 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 + ++P + ++++ A +A+ G+SR DF + R VF EIN PG T +S++ Sbjct: 276 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 334 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P + G ELL +++ A Sbjct: 335 PMLWKACGLDIPELLDTLIDQA 356 >gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] Length = 347 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPGLIERLVD 333 >gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 361 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 52/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46 + +L GG S+E +VSL + A AL F++ I + +R G V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEAL 65 Query: 47 ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V+ E+N PG TP S+FP + + G + EL+ Sbjct: 303 TQDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340 >gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 358 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 145/258 (56%), Gaps = 22/258 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG VQ + E+ +P GIL SA ++DK +K+++ + G+PV ++ Sbjct: 98 DILFPVLHGPYGEDGSVQGLAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 157 Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + T++S+ + P IKP + GSS+G+ + Q L + ++ H Sbjct: 158 TIRADAAPSLATLESE--LGLPLFIKPARQGSSVGVAKVHASQEFAPALAE--AFRHDHT 213 Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKYSSLNSTHV-LPAK 218 LL E++V G E+ V+ +A+ ++ EI +S FY+Y+ KY N + +PA+ Sbjct: 214 LLAEEFVAGREIEFSVLENAAGELFVSRPGEIVPAESHGFYNYDAKYIDENGAALKVPAE 273 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPE 276 +P D+ ++ +A A +A+GC G++R DF L+ + +L EIN PG T +S++ + Sbjct: 274 LPPDVEATMRDMAAKAFRAVGCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYSK 330 Query: 277 MAAYAGYSFRELLLWMVE 294 A +G S+ E++ +V+ Sbjct: 331 AMAASGVSYAEVIDRLVD 348 >gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] Length = 394 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 22/238 (9%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+AF VLHG+FGEDG +Q + EL+ IPY +L+SA+ MDK+ K V+ G+PV Sbjct: 100 KIDIAFPVLHGSFGEDGALQGLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVK 159 Query: 110 SILV--NRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + D+ + + P ++KP GSS+GI + + + ++ + Sbjct: 160 YVWFYSKNWQQDTTSHIGKVEQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGF 219 Query: 161 NHGDQLLIEQY-VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSL------- 209 +H +LL+EQ VD E+ C V+G +A E + + SY+ KY + Sbjct: 220 SH--KLLVEQTIVDLKEINCSVLGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMS 277 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + LPA+IP ++ ++Q+LA Q +GC G+SR DFL D + +V+ EIN PG Sbjct: 278 GTKRKLPAEIPTEMSDKIQQLAVDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG 335 >gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579] gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264] gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] Length = 361 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + + + S P +KP GSS+GI K + + +++ ++ Sbjct: 155 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054] Length = 380 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 29/258 (11%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LEL +PY SG+LASA+ MDK +K+++ S G+ Sbjct: 117 DVVLPLLHGPWGEDGTLQGLLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYT 176 Query: 112 LVNRFTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 ++ +S + P +KP + GSS+GI +K LD + Sbjct: 177 VLKPREWESEAGRAAARERIAALGLPLFVKPCRAGSSIGITKVKDLAD--LDAAVEEARR 234 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV 214 H ++++E+ V+G E+ CGV+ D +VP +FY +E KY ++S+ V Sbjct: 235 HDPKVIVEKGVEGREIECGVL--EFEDGPRASVPAEVLVDGDFEFYDFEAKY--IDSSEV 290 Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPV 271 +PA++ E++R A +GC G++R DF R W+ E+N PG TP+ Sbjct: 291 RIPAELTAAEQAEIRRQAVEVFDGLGCEGLARVDFFLLADGR---WMVNEVNTMPGFTPI 347 Query: 272 SIFPEMAAYAGYSFRELL 289 S +P+M G + EL+ Sbjct: 348 SAYPKMWEATGVPYAELI 365 >gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 355 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 46/332 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+E VSL + K+ +A++ + V Sbjct: 6 IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65 Query: 34 --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 S D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISP-------PYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T ++ LI+ P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197 + + + ++ ++ ++++EQ V E+ V+G + T+ + + + Sbjct: 186 RCNDEAELVKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F E+N PG TP S+FP + A S+ E++ Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEII 334 >gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] Length = 347 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 105/339 (30%), Positives = 158/339 (46%), Gaps = 51/339 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK-----VSQ-------------IDVDRSVG- 43 + GG S+E VSL S A + L+ + F+ ++Q I DR G Sbjct: 8 IFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQGT 67 Query: 44 ------LVLA--------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 LVL+ L D AF VLHG GEDG +Q +LEL IP G Sbjct: 68 ECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD----SQHLISPPYVIKPLKGGSS 138 L+SAL MDK R+ ++ + GV V S++ R MD + + P +KP++ GSS Sbjct: 128 ALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVP 195 GI + + +P + + + +LL+E+ + G E+ C V+G L V EI + Sbjct: 188 FGITRVTGPEGLPGAAAAAFANDR--ELLLEEAIPGFEVGCAVLGTDELTVGAVDEIELS 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + F+ +E KY+ S PA+I E+Q +A ++A+ C+ +R D P Sbjct: 246 QG-FFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTPEGE 304 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 VF E+N PG T S +P M AG F L+ ++E Sbjct: 305 IVFN-EVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342 >gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20] Length = 388 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE++ IPY G+LASA MDK +K ++ + G+ P + Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178 Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V + + D + ++ P +KP + GSSLGI + + + + + + + + Sbjct: 179 VVGPHAWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDRPEDLAGAIKAARAVD-- 236 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213 ++L+E + G E+ V+ D +A P +FY YE KY + ++ Sbjct: 237 PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVA 296 Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA+I + + A A +A+GC G++R DF V EIN PG TP S Sbjct: 297 MVCPARIDPEARALLMDTAARAFEALGCEGLARVDFFLTEAGEAVVN-EINTMPGFTPFS 355 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M +G + EL+ ++E Sbjct: 356 MYPYMWQVSGLGYTELVSELIE 377 >gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] Length = 372 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 167/349 (47%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+E EVSL S K + L+ F V + ++ Sbjct: 11 VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70 Query: 40 --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R++ LV L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 71 RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I V R T + + ++ P IK Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190 Query: 132 PLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186 P GSS+GI + + LD ++ ++LIE V G E+ C V+G+ + Sbjct: 191 PANQGSSVGISKVSTESEFYAALDF----AFLFDMKVLIESAVKGREIECAVLGNEEPLA 246 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 EI + S FY+Y KY N V+ PA++ + +++ +A A++A+ C G+SR Sbjct: 247 SPCGEIVLHDS-FYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSR 305 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D +F + V EIN PG T +S++P++ AG ++ +L+ ++E Sbjct: 306 VD-VFLTENNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIE 353 >gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 355 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 17/262 (6%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 ++ D F +LHG GEDG +Q + EL IPY G ++SA+ MDK + V+ G Sbjct: 92 TFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIPYVGCGHMSSAICMDKEMAHIVMEHAG 151 Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + P + V + ++ + P IKP GSS GI ++ + Sbjct: 152 ISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIKPANAGSSFGIHRMESFDGFEEAMKD 211 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211 + + ++++E ++G E+ VMG+ S+D E A P F+ YE KY ++S Sbjct: 212 AFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA+I +++E + +A A++A+ C+G++R D P + E+N PG T Sbjct: 269 HIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMFVTP-EDTIILNEVNTIPGFTDT 327 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S +P M AG F EL+ +V Sbjct: 328 SRYPTMMKEAGIPFPELIDKLV 349 >gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118] gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118] Length = 378 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132 + +S +S DK +K++++ G+ +LV ++ PY +KP Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191 + GSS+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + ++ Sbjct: 183 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 240 Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 I +P+S DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R Sbjct: 241 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 300 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL D F E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 301 DFLVDKNDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 347 >gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a] gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia K279a] Length = 404 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG SSE EVSL S K AL+ F+ + +D+ Sbjct: 46 VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105 Query: 42 --------------VGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 G A L+P D+ ++HG GEDG +Q +L ++ + Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R +D+ +I+ P +K Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ +K L + ++H ++L+E V G E+ C V+G+ V Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALALRYDH--KVLVESAVVGREIECAVLGNEHPQASV 283 Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY + N V+PA I ++++A A+Q + C G++R D Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVD- 342 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F ++ E+N PG T +S++P++ +G + L+ ++E Sbjct: 343 VFLTADGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 388 >gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 388 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE++ + Y G+LASA MDK +K ++ + G+ P + Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178 Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V +D+ +S P +KP + GSSLGI +++ + +P + + + + Sbjct: 179 VVGPHAWKRDPEVILDACRSLSYPLFVKPARAGSSLGISKVERPEDLPGAIEAARAIDP- 237 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS-T 212 ++L+E + G E+ V+ D +A P +FY +E KY + ++ Sbjct: 238 -KVLVESGIVGREVEVAVLEGRGDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVA 296 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA+I + + A A +A+GC G++R DF V EIN PG TP S Sbjct: 297 MVCPARIGPEERALIMDTAARAFEAVGCEGLARVDFFLTEAGEAVVN-EINTMPGFTPFS 355 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M +G + +L+ ++E Sbjct: 356 MYPYMWQVSGLGYTDLVSELIE 377 >gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] Length = 378 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 172/345 (49%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 +A+L GG SSE +VS S AL+ + VS Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 35 --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV---NR----FTMDSQHLISPPYVIKPLKGG 136 I ASA+S DK +K+++S G+ P ++V NR ++ + L + +V KP K G Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFV-KPAKQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 186 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 243 Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 244 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 303 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D S V +L E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 304 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 382 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 12 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71 Query: 37 --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 72 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132 + +S +S DK +K++++ G+ +LV ++ PY +KP Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191 + GSS+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + ++ Sbjct: 187 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 244 Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 I +P+S DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R Sbjct: 245 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 304 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL D F E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 305 DFLVDENDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 351 >gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] Length = 377 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 62/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 35 --------QIDVDRSVGLVLA--HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +D+DR + ++A L+ D + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVN----------RFTMDSQHLISPPYVIKPL 133 I ASALS DK +K++++ G+ P +L+ R + +LI IKP Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLI----FIKPA 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDV 189 + GSS+GI + + L + ++ ++L E+ +D E+ ++G+ + + Sbjct: 183 RQGSSVGIHRVTNAEEYAAALKDAFKYDF--KVLAEKGLDRPQEIEISILGNEHPVASKL 240 Query: 190 TEIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + VP+SD FY YE K+ + LP K+P + E+ +A A++ +G +G+SR D Sbjct: 241 GAVRVPESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRID 300 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D S + +L E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 301 FLVD--SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346 >gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT 5713] gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 378 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132 + +S +S DK +K++++ G+ +LV ++ PY +KP Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191 + GSS+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + ++ Sbjct: 183 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 240 Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 I +P+S DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R Sbjct: 241 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 300 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL D F E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 301 DFLVDENDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 347 >gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601] gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601] Length = 355 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/346 (28%), Positives = 163/346 (47%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA---------GFKVSQ----IDVDRSVGLVLA 47 + ++ GG S+E EVS+SS K A + F +++ +D D S +++ Sbjct: 9 IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68 Query: 48 HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F +LHG GEDG + +L + P Sbjct: 69 ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GI+ SAL MDK+ K + S+ +P ++ ++ + + ++ P +K Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188 Query: 132 PLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 P GSSLGI VI K + IP + +LIE+ ++ E+ CG++G++ L + Sbjct: 189 PSNSGSSLGISKVINKSEIIPA---LEKARGIDPSILIEEGLEVREIECGIIGNSKLLTS 245 Query: 191 EIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI KSD+Y Y KY S N+ ++PA+I I KE++ +A + +A+ G +R DF Sbjct: 246 EIGEVNYKSDWYDYNSKYHS-NNKIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+F EIN PG T S+FP + +G +L+ +V+ Sbjct: 305 FLEKSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350 >gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 348 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP V ++ + ++S ++ P +KP GSS+GI K Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204 + L + + ++LIEQ V E+ G++G+ ++ T+ D FY Y+ Sbjct: 186 ENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P ++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] Length = 358 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 140/263 (53%), Gaps = 21/263 (7%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 H D+ F LHG GEDG VQ + E+ IPY +G+++SA+ MDK ++++ + G+PV Sbjct: 95 HADIDVVFPALHGVNGEDGTVQGVFEMAGIPYVGTGVMSSAVCMDKEFMRKLMVAEGLPV 154 Query: 108 CPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +++ T + HL P +V KP +GGSS+G+ + +P + ++++++ Sbjct: 155 TRDVILRGRTELTDAEKDHLGLPVFV-KPARGGSSIGVSKVNTWDELPAAIAEAAAFD-- 211 Query: 164 DQLLIEQYVDGIELTCGVM----GD------ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 D++++E + G E+ GV+ G+ A L+ TE + FY ++ KY T Sbjct: 212 DKVIVEAELVGAEVEVGVLEYPTGELVASVPAKLNGTEDS--DEGFYGFDTKYLDNTVTA 269 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA K +Q LA QA+ C G+SR DF + EIN PG TP+S+ Sbjct: 270 TIPAPFDEATTKALQDLAVETFQALNCEGLSRVDFFV--TEQGPMINEINTLPGFTPISM 327 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P++ +G S+ ELL ++ A Sbjct: 328 YPQVFLASGVSYPELLDTLIATA 350 >gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA+ Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAERT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG 18311] gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 348 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 89/331 (26%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP V ++ + +++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202 + + +DL + + ++LIEQ V E+ G++G+ ++ T+ D FY Y Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+ Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PG T S++P + G S+ +L+ +V Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|111222491|ref|YP_713285.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a] gi|111150023|emb|CAJ61718.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a] Length = 321 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 18/287 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S EREVSL SG AL G + DVD + LA PD+ F VLHG Sbjct: 9 ILAGGLSPEREVSLRSGGRLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG ++ +L+L ++PY + A ++ DK +K V + GV ++ + R + Sbjct: 69 GEDGTIREVLDLYDLPYVGAAPPACRVAFDKATAKAAVGAAGVATPAAVTLPREAFHDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + LI P V+KP GGS+ G+ + + L+ S + + D LIE+ V Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVSRVDDAGGLAEALM--SCFGYHDSALIERAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+T GV+ G +L EI P + Y Y +Y++ + PA++ + + Sbjct: 187 SGVEITVGVVEVGDGPVALPAVEIE-PAAGVYDYAARYTAGATAFFTPARLDDAVLRAAA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A AH+ +G R +SR+D + D F LE+NV PGMT S +P Sbjct: 246 ATAVTAHRVLGLRDLSRTDMIVDAAGVAQF-LEVNVAPGMTDTSTWP 291 >gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] Length = 362 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK------------------------VSQI 36 + ++ GG S E EVSL + A +A ++ V Q+ Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67 Query: 37 DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++R+ G A L D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGG 136 ASA MDK K++ G+P N ++ S L+ P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAV 194 SS+GI K + L+ + ++++E+YVD E+ V+G+ V V Sbjct: 188 SSVGIS--KANNREELEKAVDLALQFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG TP S++P + G S+ LL M+ Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMI 344 >gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] Length = 378 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 32/278 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D VLHG +GEDG +Q + E++ +PY G+ ASA MDK +K ++++ G+ Sbjct: 100 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVFASAACMDKHYTKVLLAAAGI 157 Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148 PV P I ++ F + + +++ P +KP + GSS G+ ++++ Sbjct: 158 PVAPGITLDARDCDAACAFAANGETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKVEREGD 217 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197 + L + +H ++L+EQ +D E+ C V+ + D + P Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGDEPRASWPGEIVLDKRAGGDD 277 Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY ++ KY ++HV +PA +P + + V+ A A +A+ G+SR D F K Sbjct: 278 QFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-TFVTADGK 336 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ +L+ ++E Sbjct: 337 VMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLIE 374 >gi|75675248|ref|YP_317669.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255] gi|74420118|gb|ABA04317.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255] Length = 330 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP------ 51 + +L GG + ER VS++S +A AL +A + + VD + H +P Sbjct: 3 ITILFGGSNKERLVSVASAQALHHALPEADLWFWNLRDEIVDVRSETLRDHARPFEDEFV 62 Query: 52 --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + A + LHG E+G +QA+ EL IP+T SG AS L+ D Sbjct: 63 PGGSGAPLERALDRARAEDRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSI 150 K+ +K+ V+S GVP +L+ D H ++ V KP GSS G+I + + Sbjct: 123 KVAAKRFVASAGVPTPAHVLLE----DIDHALAEHGRLVAKPACDGSSYGLIFV----NA 174 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY 206 P D++ + +IE +V G+E TCGV+ + V + VP + Y KY Sbjct: 175 PQDIVTVREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKY 234 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + + P + +I ++ + AH+A+ CRG SR+DF+ +LE N P Sbjct: 235 LAKTTQEICPGRFSPEIAAQIMDHSLRAHRALSCRGYSRTDFIV--TGNGPIYLETNTLP 292 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 G+T S++P+ G F + L Sbjct: 293 GLTAASLYPKALHAQGVGFADFL 315 >gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] Length = 378 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE++ IPY G+LASA MDK +K ++ + G+ P + Sbjct: 109 DVVLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 168 Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +V + + D + ++ P +KP + GSSLGI + + + + + + + + Sbjct: 169 VVGPHAWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDRPEDLAGAIEAARAVDP- 227 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS-T 212 ++L+E + G E+ V+ D +A P +FY YE KY + ++ Sbjct: 228 -KVLVESGIVGREVEVAVLQGRGDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVA 286 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA+I + + A A +A+GC G++R DF V EIN PG TP S Sbjct: 287 MVCPARIGPEARDLLMDTAARAFEALGCEGLARVDFFLTDAGEAVVN-EINTMPGFTPFS 345 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M +G + EL+ ++E Sbjct: 346 MYPYMWQVSGLGYTELVSELIE 367 >gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 364 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 137/258 (53%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG +Q +LEL IPY G+LASA +MDK +K+++++ G+PV Sbjct: 103 DVVFPVLHGAFGEDGTIQGLLELAGIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFS 162 Query: 112 LVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 + R + + P +KP + GSS+GI + LD + + ++L Sbjct: 163 ALKRGQSTLEQTDREKLGLPVFVKPSRAGSSVGISRVADWAG--LDAAIALARATDPKVL 220 Query: 168 IEQYVDGIELTCGVMG------DASLDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAK 218 +E V G E+ CGV+ +ASL EI V D +Y +E KY ++ +PAK Sbjct: 221 VEAAVVGREVECGVLEFPDGHVEASLPA-EIRVLSEDENAWYDFETKYLGDDAELDIPAK 279 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++++ +A A +A+ C+G++R DF F ++ E+N PG T S +P+M Sbjct: 280 LDDALTEKLRAMAVEAFRALDCQGLARVDF-FVTEDHQLIINEVNTMPGFTTKSAYPKMW 338 Query: 279 AYAGYSFRELLLWMVEDA 296 G + LL +VE A Sbjct: 339 EVTGMDYPTLLTTLVETA 356 >gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 364 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 52/324 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47 + +L GG S+E +VSL + A AL F++ I + +R G V + Sbjct: 9 LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 68 Query: 48 -------HLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + P D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 69 QMNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 129 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPA 188 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + I Sbjct: 189 NLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVIG 246 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK +FY Y+ KY ++ ++PA++ + K +QR A A Q++ G++R+DF F Sbjct: 247 EIVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADF-FL 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFP 275 +V+ E+N PG TP S+FP Sbjct: 306 TKDGEVYINEVNTMPGFTPFSMFP 329 >gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 139/254 (54%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLI-----SPPYV--IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + S Y+ +KP GSS+GI + + + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYLMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus] Length = 345 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 45/324 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + ++ GG+S E VS+ S + A +L+ ++ I + Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 39 ------DRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DR+V GL++ ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYS 201 +Q + L + ++ ++LIE+ V G E+ C +MG+ + +V +A+ F Sbjct: 186 TEQELKAALETAREFDS--KVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST + PA IP + VQ A ++A+GCRGI+R D +F V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVD-MFLKEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAG 282 E+N PG+T S +P M A AG Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAG 326 >gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 353 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 165/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159] gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159] Length = 349 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 46/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39 + +L GG S+ER+VS+ S ++ A+ F V S+ D Sbjct: 6 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 65 Query: 40 RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + ++A +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 MDK+ + QV+ S+ +P + L ++ + LI P +V KP GSS+GI Sbjct: 126 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 183 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 K + L + + + ++LIEQ VD E+ G++G+ + T EI V F Sbjct: 184 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 241 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 242 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 300 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S++P + G S+ L+ +V Sbjct: 301 NELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 334 >gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] Length = 348 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 51/336 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142 MDK+ +KQV+++ GVP F D +H I S P +KP GSS+GI Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183 Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197 + S+ +DL + + ++LIEQ V E+ G++G+ + T E+ V Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY +PAK+ + +++ A A +AIG G+SR DF F ++ Sbjct: 239 DFYDYDAKYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F E+N PG T S++P + G ++ +L+ +V Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333 >gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] Length = 356 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 49/334 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 + +L GG S+E EVSLS+ A A++ ++V I + + + Sbjct: 5 IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64 Query: 43 GLVLAHLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L KP D+ +LHG GEDG VQ +LE+L IPY +G+LAS Sbjct: 65 QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGS 137 + MDK+ KQ+ G+ P + R D+ L+ P +V KP GS Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFV-KPANLGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVP 195 S+GI K D L + + +++IEQ V E+ GV+G + + V P Sbjct: 184 SVGI--SKADNREELIVAVKEALKFDRKIVIEQGVVAREIEVGVLGNDEPACSVAGEIKP 241 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY Y+ KY N+ ++PA++ +Y ++ A A + + C G+ R+DF F + Sbjct: 242 LKAFYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADF-FVTANN 300 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ E+N PG TP S+FP + + G + EL+ Sbjct: 301 EILINEVNTLPGFTPFSMFPLLWEHTGVPYPELI 334 >gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 395 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 27/260 (10%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D F LHG FGEDG VQ IL+ + IPYT + A+A+ MDK+ K V S +P+ Sbjct: 108 KIDAVFVALHGTFGEDGAVQGILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTD 167 Query: 110 SILVNR--FTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 R + D I P +KP GSS+GI K + + D ++ + ++ Sbjct: 168 YFYFYRDFYKFDIVKAEAEKIGYPVFVKPANLGSSVGISKAKNEAELK-DAVE-VAMHYD 225 Query: 164 DQLLIEQYVDG-IELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSS----------L 209 ++++E+ V+ E+ C V+G D +TE + DF +Y+ KY S Sbjct: 226 RKIIVEKSVEKPREINCAVLGYEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMK 285 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 N LPA IP ++ +EV+RLA LA ++I G++R DFL D + KV+ EIN PG Sbjct: 286 NQKKNLPANIPDEMTEEVKRLAKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPGSI 344 Query: 270 PVSIFPEMAAYAGYSFRELL 289 +F M G SF+EL+ Sbjct: 345 AFYLFEPM----GISFKELI 360 >gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 332 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40 +A++ GG SSE EVSL S + S + + V Q+ +D+ Sbjct: 7 IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GE+GL+Q +++++PY+ SG+L A++ +K + Sbjct: 67 SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151 G V S++V + D H IS P IKP GSS G+ +K IP Sbjct: 127 RGFGYNVAKSMVVYK---DEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIP 183 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYS 207 L ++N ++++IE ++ G E++ G G SL TE+ V +++F+ Y KY+ Sbjct: 184 AAL--ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEV-VTENEFFDYNAKYN 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264 + PA++ D + V + + C GI R D++ D + V LEIN Sbjct: 241 G-QVQEITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINT 299 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PGMT S P+ AG + ++L +VE Sbjct: 300 TPGMTATSFIPQQVRAAGLNMTDVLTNIVE 329 >gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] Length = 372 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 ++ D+ F VLHG +GEDG +Q +LEL +IPY G+L+SA+SMDK+ +K +V GV Sbjct: 110 EVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCGVLSSAVSMDKLYTKIIVDDLGVRQ 169 Query: 108 CPSILVNR---FTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V R M+S + S P IKP GSS G V K D L+ S + Sbjct: 170 AAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNAGSSRG--VTKADDRQALEAGLSEA 227 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVL 215 H ++L+E+ + G E+ C V G +V V + ++FY +E KY + S V Sbjct: 228 ARHDRKILVEETIIGREIECAVFGGGLKEVVASGVGEILAAAEFYDFEAKYYNEESRTVT 287 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 ++P + V++ A +A+ G++R DF VF EIN PG T +S++P Sbjct: 288 DPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFVKDDGEVVF-NEINTMPGFTAISMYP 346 >gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160] gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408] Length = 353 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 46/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + LV+ ++ + ++ P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELN 308 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 PG T S++P + G ++ +L L+ + E+A R Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001] Length = 316 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 15/295 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V+ GG+S EREVS SG A AL AG DV + LA + + F VLHG Sbjct: 8 VIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHGVA 67 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------- 115 GEDG ++ ILEL +PY + A + DK +K+ G+ S+ + + Sbjct: 68 GEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHDLG 127 Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 T + P +KP GGS+ G+ +++ + +P L+ +++ D+ LIE+ V Sbjct: 128 AAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEALMACFAYH--DEALIERLV 185 Query: 173 DGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G E+ GV +G+ + + + Y Y +Y+ PA+I +E R+ Sbjct: 186 TGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAARV 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+ +G R +SR+D + +V LE NV PGMT S +P AG F Sbjct: 246 AVAAHRTLGLRDLSRTDAIVT-TEGEVVVLETNVAPGMTLTSTYPMALEAAGLGF 299 >gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7] Length = 330 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38 +A++ GG SSE +SL S S ++ + + + D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V H D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K Sbjct: 65 SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122 Query: 99 VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + GV + SI L T+ + +++ P +KP GGSS G+ +K+ +I + Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ G ++++E+++DG E+TCG V G + +TE+ V ++F+ ++ KY+ Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT Sbjct: 239 VDEITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG ++++ ++ED Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322 >gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24] gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24] Length = 382 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 132/259 (50%), Gaps = 28/259 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LEL + Y +G+LASA+ MDK K V + G+ V P I Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYI 175 Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 V D Q L P P +KP + GSS+GI K D LD +++ Sbjct: 176 AVT----DRQWLTDPEAIRKRVDRLGYPVFVKPARAGSSMGI--SKVDSLEGLDAAIAAA 229 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNS 211 H +L+IE + G E+ C V+ + ++P + +FY + KY ++ Sbjct: 230 REHDLKLVIEAGIVGREIECAVLEGRGTEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDA 289 Query: 212 THV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA +P + V+ LA A A+G G+SR DF + P ++ EIN PG TP Sbjct: 290 ASLSCPADLPDEAIARVRELAAAAFDAVGAEGLSRVDFFYTP-DGELIINEINTMPGFTP 348 Query: 271 VSIFPEMAAYAGYSFRELL 289 S++P+M A +G + EL+ Sbjct: 349 KSMYPQMWAASGLGYAELI 367 >gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] Length = 348 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP V ++ + +++ ++ P +KP GSS+GI K Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204 + L + + ++LIEQ V E+ G++G+ ++ T+ D FY Y+ Sbjct: 186 ENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P+++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSNLIKELV 333 >gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] Length = 347 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 I D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+N Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333 >gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] Length = 330 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38 +A++ GG SSE +SL S S ++ + + + D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V H D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K Sbjct: 65 SFKENGVAKHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122 Query: 99 VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + GV + SI L T+ + +++ P +KP GGSS G+ +K+ +I + Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ G ++++E+++DG E+TCG V G + +TE+ V ++F+ ++ KY+ Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT Sbjct: 239 VDEITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG ++++ ++ED Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322 >gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 382 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 20/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LEL + Y +G+LASA+ MDK K V S G+ V P + Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYV 175 Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V ++ D + + + P +KP + GSS+GI K + LD + H Sbjct: 176 AVTDRQWRKDPESVRKQVDRLGFPVFVKPARAGSSMGI--SKVESMAELDAAIEEARRHD 233 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214 +L+IE + G E+ C V+ D ++P +FY + KY + + Sbjct: 234 LKLVIEAGITGREIECAVLEGRGTDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALS 293 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA IP + V+ LA A A+G G+SR DF + P + EIN PG TP S++ Sbjct: 294 CPADIPEEAIARVRELAAAAFDAVGAEGLSRVDFFYTPAGELII-NEINTMPGFTPKSMY 352 Query: 275 PEMAAYAGYSFRELL 289 P+M A +G + +L+ Sbjct: 353 PQMWAASGLDYADLI 367 >gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 375 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 142/255 (55%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108 D+ F ++HGN GEDG +Q +L LL PY SG+L SA+S DK +K+++ GV Sbjct: 97 DVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYE 156 Query: 109 --PSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + V +++ DS + +KP GSS+GI K + S D ++ + ++ Sbjct: 157 LLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGI--HKVETSDDYDEAIRDAFRYDNK 214 Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219 +L+E+ ++G EL V+G+ + V I VP D FY+Y+ K+ + +P I Sbjct: 215 VLVEEAIEGPEELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVPVDI 274 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + KE+ ++A +++A+G +G++R DFL S + E+N PG T +S++P++ A Sbjct: 275 SEALSKELTKMALDSYRALGLKGMARIDFLVSQDSEP-YVSEVNTLPGFTNISLYPQLFA 333 Query: 280 YAGYSFRELLLWMVE 294 +G S+REL+ +++ Sbjct: 334 ASGISYRELIDRLIQ 348 >gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4] gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 362 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + L+ ++ Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 214 DRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 333 TGLPYPELI 341 >gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium] Length = 330 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 16/234 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY YE KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 ++Y++ Q A LA+ +G G+SR DF F ++F E+N PG T S++ Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMY 321 >gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] Length = 378 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 30/272 (11%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F VLHG +GEDG +Q + E++ +PY G+LASA MDK +K ++++ G+PV P I Sbjct: 104 DAVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGI 163 Query: 112 LVNRFTMD----------------SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDL 154 ++ + D S+ + P +KP + GSS G+ ++ + + L Sbjct: 164 TLDARSFDKASEFKANADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAA 223 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYE 203 + +H ++L+EQ +D E+ C V+ + + + + P FY ++ Sbjct: 224 AVYEASHHDWRILVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFD 283 Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY ++HV +PA +P + V+ A A A+ G+SR D F KV EI Sbjct: 284 SKYMDAAASHVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVD-TFVTKDGKVMVNEI 342 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T +S++P+ G + +L+ ++E Sbjct: 343 NTMPGFTSISMYPKAWEATGVRYTDLITMLIE 374 >gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 362 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + L+ ++ Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 214 DRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 333 TGVPYPELI 341 >gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 362 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG VQ +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 96 DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S + + + D + ++ P +KP GSS+GI K + L+ ++ Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 214 DRKIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 333 TGLPYPELI 341 >gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] Length = 355 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/332 (26%), Positives = 157/332 (47%), Gaps = 46/332 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+E +SL + K+ +A++ + V Sbjct: 6 IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65 Query: 34 --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 S D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T ++ + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197 + + + ++ ++ ++++EQ V E+ V+G + T+ + + + Sbjct: 186 RCNDEAELVKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA + +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F E+N PG TP S+FP + A S+ E++ Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEII 334 >gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 388 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 26/268 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q +LE++ +PY G+LASA MDK +K ++ + G+ P + Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178 Query: 112 LVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWN 161 +V T +++ ++ P +KP + GSSLGI + + P DL Q+ ++ Sbjct: 179 VVGPHTWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDR----PEDLRQAIEAARA 234 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS 211 ++L+E + G E+ V+ D +A P +FY Y+ KY + ++ Sbjct: 235 VDPKVLVESGIVGREVEVAVLQGRDDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDA 294 Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 V PA+I + + A A +A+GC G++R DF V EIN PG TP Sbjct: 295 VAMVCPARIGPEARALIMDTAARAFEAVGCEGLARVDFFLTDSGEAVVN-EINTMPGFTP 353 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASC 298 S++P M +G + L+ ++E A+ Sbjct: 354 FSMYPYMWQVSGLDYTALVSELIELAAA 381 >gi|312198489|ref|YP_004018550.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c] gi|311229825|gb|ADP82680.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c] Length = 318 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 145/296 (48%), Gaps = 16/296 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ L+ G V DVD S L P + VLHG Sbjct: 9 VLAGGLSPEREVSLRSGRRLCDELDRIGVDVELRDVDGSTLPALDADPPAVVIPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG ++ +L+L +PY + A + DK +K +S+ G+ P++ + R + Sbjct: 69 GEDGTIREVLDLYGLPYVGATPAACRGAFDKATAKAALSAAGIATPPAVTLPREAFHDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + LI P V+KP GGS+ G+ ++ + L+ + + + D LIE+ V Sbjct: 129 AAALIDRVVTRLGLPLVVKPRAGGSAFGVGRVEDAGQLAEALM--ACFGYHDCALIERAV 186 Query: 173 DGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ GV+ VT AV P + Y Y +Y+ +T +PA++ D+ + Sbjct: 187 AGVEIAVGVVDTGDGPVTLPAVEIQPVTGVYDYAARYTPGATTFHIPARLDEDVLRAAAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AH+ + R +SR+D + D F LE+NV PG+T S +P AG Sbjct: 247 AAVAAHRVLDLRDLSRTDLIIDADGVAQF-LEVNVAPGLTATSTWPMALKAAGLDL 301 >gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066] gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 348 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 165/331 (49%), Gaps = 45/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP V ++ + +++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202 + + +DL + + ++LIEQ V E+ G++G+ ++ T+ D FY Y Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+ Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PG T S++P + G S+ +++ +V Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDIIKELV 333 >gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str. 168] Length = 354 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 88 DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYA 147 Query: 110 SILVNRFTM-------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L +T + + + P +KP GSS+GI + + + ++ + Sbjct: 148 AFLKKDWTRSPKESCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 205 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ ++G E+ GV+G D V PK+DFY Y+ KY ++ ++PA + Sbjct: 206 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 265 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y + +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 266 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 324 Query: 281 AGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 325 AGVEYADLIEQLVE 338 >gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 350 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 14/262 (5%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 +LA + D+ F V+HG +GEDG +Q +LELL +PY +G+LASA MDK +K ++ + G Sbjct: 91 ILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVGNGVLASATGMDKATTKTLLRAAG 150 Query: 105 VPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +PV +++ + + + + P +KP + GSSLG+ + D S L+ ++ Sbjct: 151 LPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGSSLGVTRV-GDWS-ELEAAVKTAR 208 Query: 161 NHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVPKSD-FYSYELKYSSLNSTHV 214 ++L+E+ V G E+ V+ D +L V EI V ++ F+ Y+ KY ++ Sbjct: 209 EFDTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEIRVADTERFFDYDTKYGG-DAVFD 267 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA +P+ I ++ LA +A+GC G+ R DF + V E+N PG T S + Sbjct: 268 IPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLRGGTEPVVN-EVNTLPGFTAHSQY 326 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P++ G + ELL ++ A Sbjct: 327 PQIWRATGLEYPELLDSLIRTA 348 >gi|86749124|ref|YP_485620.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2] gi|86572152|gb|ABD06709.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 329 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 153/323 (47%), Gaps = 47/323 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP-DLAF- 55 +L GG S ER VS++S +A +AL DA ++ + D SV V LAH +P + AF Sbjct: 5 ILFGGTSKERLVSVASAQALHAALPDA--ELWFWNDDDSVHAVTAEALLAHARPFEEAFR 62 Query: 56 ----NV--------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 N+ LHG E+G +QA+ E+ +P+T SG AS L+ Sbjct: 63 PAGENIGPLERALDRAAIEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHLAF 122 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK+ +K+ + GV I + ++ + KP + GSS G+ I Q Sbjct: 123 DKVAAKRFAAIAGVRAPAGIALA--EAEAALAAHGRLIAKPARDGSSYGLFFINAKQ--- 177 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKY 206 DL+ + LIE +V GIE TCGV+ A +L EI VP + Y KY Sbjct: 178 -DLVAVRDAARSEDYLIEPFVSGIEATCGVLEQADGSLLALPPIEI-VPADGGFDYTAKY 235 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + ++ + P + I + A AH+ +GCRG SRSDF+ ++ +LE N P Sbjct: 236 LAKSTQEICPGRFAPQISARIMEDAVKAHRVMGCRGYSRSDFIV--VADGPIFLETNTLP 293 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 G+T S++P+ G +F + L Sbjct: 294 GLTKASLYPKALQAQGIAFVDFL 316 >gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. SMY] Length = 361 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYA 154 Query: 110 SILVNRFTM-------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L +T + + + P +KP GSS+GI + + + ++ + Sbjct: 155 AFLKKDWTRSPKESCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ ++G E+ GV+G D V PK+DFY Y+ KY ++ ++PA + Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y + +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 273 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331 Query: 281 AGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 332 AGVEYADLIEQLVE 345 >gi|288920000|ref|ZP_06414320.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f] gi|288348564|gb|EFC82821.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f] Length = 319 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 18/297 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSLSSG AL G DVD + LA P + VLHG Sbjct: 9 VLAGGLSVEREVSLSSGSRLHEALSRIGVDTELRDVDDATLTALAGDPPAVVIPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119 GEDG ++ +L+L +PY + A + DK +K V++ G+ ++ + R + Sbjct: 69 GEDGTIREVLDLYGLPYVGAEPAACRSAFDKAAAKATVTASGISTPRAVTLPREAFHDLG 128 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + LI P V+KP GGSS G+ +++ + L+ + + + D LIEQ V Sbjct: 129 AAQLIDRVVGRLGLPLVVKPRAGGSSFGVGRVEEAGQLAEALM--ACFGYHDWALIEQAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G +L EI P + Y Y +Y+ +T + PA++P + Sbjct: 187 TGVEIAVGVVDTGSGPIALPAVEIE-PVTGPYDYAARYTPGATTFITPARLPAAVLDAAA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 A AHQA+G R +SR+D + D F LE+NV PGMT S +P AG F Sbjct: 246 AAAVAAHQALGLRDLSRTDLIVDAAGVPQF-LEVNVAPGMTDTSTWPMCLEAAGLEF 301 >gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 135/254 (53%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L + ++ + Sbjct: 152 VLKNQWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI--SKAENREELQNALALAYQYD 209 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T E+ V FY Y+ KY + +PA++P Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYDAKYINNKIEMQIPAEVP 268 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++Y++ Q A +A+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 269 EEVYQKAQEYAKIAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTQFSMYPLLWEN 327 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 328 MGLKYGDLIEELIQ 341 >gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L++PY +G++ SA +MDK+ +K ++ + G+P P Sbjct: 97 IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI + + + L ++ + Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYD 214 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + L+EQ +D E+ V+G+ + T E+ V + FY Y KY + +PA +P Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVP 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ ++ + A A+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 274 EDVMQKARDFAKSAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 333 MGLKYSDLIEELIQ 346 >gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 46/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39 + +L GG S+ER+VS+ S ++ A+ F V S+ D Sbjct: 40 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 99 Query: 40 RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + ++A +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 100 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 159 Query: 91 MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 MDK+ + QV+ S+ +P + L ++ + LI P +V KP GSS+GI Sbjct: 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 217 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 K + L + + + ++LIEQ VD E+ G++G+ + T EI V F Sbjct: 218 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 275 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 276 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 334 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S++P + G S+ L+ +V Sbjct: 335 NELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 368 >gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum] Length = 343 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 47/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S G+ KP Sbjct: 6 VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKS-GVWKLCEKPCLDWEQYAK 64 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 65 YPVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDI 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +S + MDK + V + G+ V ++ S P +KP + GSS G+ + Sbjct: 125 QSSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKV 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFY 200 K + + + ++ ++ ++LIEQ V G E+ C V+G + +V +I++ F Sbjct: 185 DKAEDLCAAINEARQYDR--KVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFK 242 Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S N+T +PA +P + + +Q+ A +Q +GCRG++R D LF + Sbjct: 243 IHQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARID-LFLREDGHI 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ EL+ ++E Sbjct: 302 VLNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIE 338 >gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 157/324 (48%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-----------------KVSQIDVDRS-V 42 +A+LMGG SSE EVSL S L+ + K + +D++ Sbjct: 4 IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63 Query: 43 GLVLAHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + K AFN +HG GEDG +QA + IP T + ASAL+ +K V+ Sbjct: 64 SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +NR T + + P +K + GSS+G+ ++ I D Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDI--DEAI 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE+++ G E++ GV+ L +TEI V ++DF+ +E KY S Sbjct: 182 EKAFEVDSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEI-VSENDFFDHEAKYEG-KSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ + K+V+ +A + + +G SRS+++ ++ + LE+N PG+T S Sbjct: 240 EITPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKAS 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG + L +E+A Sbjct: 298 ILPQQAKAAGITLANLFDNAIEEA 321 >gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 344 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 44/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVGLVL 46 + VL GG S E VS+ S + A L+ ++ I + R G V Sbjct: 6 IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65 Query: 47 AHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 A L PD VLHG FGEDG VQ + EL + Y + + Sbjct: 66 AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + S+ G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202 +P + + ++ ++LIE+ V G E+ C V+GD +V IA+ F + Sbjct: 186 PDDLPAAIEAAREYD--SKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243 Query: 203 EL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + S NST ++PA IP + VQ+ A ++A+GC G++R D P +V Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M + AG S E+L +V Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336 >gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824] gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824] gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018] Length = 343 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/337 (24%), Positives = 166/337 (49%), Gaps = 43/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKAC----------------------------ASALEDAGFK 32 +A+L GG S+E EVS S + A +E+ ++ Sbjct: 5 VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64 Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + + +L + + D+ F V+HG +GEDG +Q + +L+ +P +L+S++ MD Sbjct: 65 KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143 K+ +K V+ + ++V+ + + +I IKP GSS+GI Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 + + L ++ ++ ++L+E+ ++ E+ V+G+ EI VP +FY Sbjct: 185 AHNRKELEAGLEEAMKYDR--KILVEEALNAREIEVAVLGNEEPKAAIPGEI-VPAKEFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY + S ++PA + + ++++ +A ++A+ C G+SR DFL D + +++ Sbjct: 242 DYEAKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 E+N PG T +S++P++ A AG + +L+ ++E A+ Sbjct: 302 EVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338 >gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 357 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 165/344 (47%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S+E EVS+ S AL+ + + + R +L Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69 Query: 47 -----------------AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 AH P D+ F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV S+ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ DA+ ++ EI Sbjct: 190 GVAKVHASQEFAPALAE--AFRHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + +PA +P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFF--- 304 Query: 253 LSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L++ + +L EIN PG T +S++ + A +G + E++ +VE Sbjct: 305 LTQDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVE 348 >gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016] gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 378 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 60/347 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 +A+L GG SSE +VS S AL+ + VS Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 35 --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPLK 134 I ASA+S DK +K+++S G+ P ++V T ++Q S + +KP K Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPAK 183 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVT 190 GSS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 184 QGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLG 241 Query: 191 EIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DF Sbjct: 242 AVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDF 301 Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D S V +L E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 302 LVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto BEST195] gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] Length = 361 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG GEDG +Q +LELL IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLAQAKYA 154 Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + L +T + + P +KP GSS+GI + + + ++ + Sbjct: 155 AFLKKDWTRSPKESCEQVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212 Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ ++G E+ GV+G D V PK+DFY Y+ KY ++ ++PA + Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + Y + +A A +AI G+ R+DF F +V E+N PG TP S+FP + Sbjct: 273 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331 Query: 281 AGYSFRELLLWMVE 294 AG + +L+ +VE Sbjct: 332 AGVEYADLIEQLVE 345 >gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] Length = 367 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 14/248 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q LE+L +PY +G+ ASA MDK+ SKQ+ G+P P + Sbjct: 101 IVFPVLHGPNGEDGTIQGFLEVLGMPYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVA 160 Query: 113 VN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + + ++ P +KP GSS+GI + + + ++ ++ Sbjct: 161 FDSREWAQSPEEWMNRCEGNLLYPLFVKPANMGSSVGISKATTTEELRAAVEKALQFDR- 219 Query: 164 DQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 ++++EQ + E V+G DA V V +DFY Y+ KY + +PA++P Sbjct: 220 -RIVVEQGISAQECEVAVLGNDDAHASVVGRLVKTADFYDYDEKYVNNTVEMEIPAQLPD 278 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 I ++Q A A++A+ +G+SR DF F S ++ EIN PG TP S++P + Sbjct: 279 AISDKIQEYALRAYRALDGKGLSRVDF-FVTASHDIYINEINTMPGFTPYSMYPCLWEAT 337 Query: 282 GYSFRELL 289 G + R+L+ Sbjct: 338 GLNTRDLI 345 >gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] Length = 353 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 15/258 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + VLHG GEDG VQ + L+ P+ SG+L SA+ MDK+ K ++ G+ P + Sbjct: 96 DIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSGVLGSAVGMDKLAMKAAFAAAGLSQVPYL 155 Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +N ++ + P +KP GSS+GI + + L Q++ Sbjct: 156 GLNAIDLEEPERLEQLLTRLEKELGYPCFVKPANLGSSVGITKARTRDELLDGLHQAAVL 215 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218 + +LL+EQ V EL C V+G L + + + +D+Y YE KY+ S ++PA Sbjct: 216 D--TRLLVEQGVKARELECAVLGRRHLRASVVGEIRFDADWYDYETKYTEGRSQTLIPAP 273 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P + +++Q +A A QA+ G +R D +D S +++ EIN PG T S++P + Sbjct: 274 LPASVSQQIQAMAIRACQAVHAYGQARVDVFYDETSGQIWLNEINTLPGFTSQSMYPTLW 333 Query: 279 AYAGYSFRELLLWMVEDA 296 G +L+ +V+ A Sbjct: 334 EATGIPLPQLVAQLVDTA 351 >gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112] gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112] Length = 382 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 60/347 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 +A+L GG SSE +VS S AL+ + VS Sbjct: 11 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70 Query: 35 --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 71 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPLK 134 I ASA+S DK +K+++S G+ P ++V T ++Q S + +KP K Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPAK 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVT 190 GSS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 188 QGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLG 245 Query: 191 EIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DF Sbjct: 246 AVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDF 305 Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D S V +L E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 306 LVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 350 >gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC 15703] gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 378 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 30/272 (11%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F VLHG +GEDG +Q + E++ +PY G+LASA MDK +K ++++ G+PV P I Sbjct: 104 DAVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGI 163 Query: 112 LVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-QSIPLDL 154 ++ F D+ +++ P +KP + GSS G+ ++ + + L Sbjct: 164 TLDARSFDKASEFKTDADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAA 223 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYE 203 + H ++L+EQ +D E+ C V+ + + + + P FY ++ Sbjct: 224 AVYEASRHDWRILVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFD 283 Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY ++HV +PA +P + V+ A A A+ G+SR D F KV EI Sbjct: 284 SKYMDAAASHVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVD-TFVTKDGKVMVNEI 342 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PG T +S++P+ G + +L+ ++E Sbjct: 343 NTMPGFTSISMYPKAWEATGVRYTDLITKLIE 374 >gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 331 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF-TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 G+ V SIL+ R D + + I P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++IE ++DG E++ G+ A L TE+ V ++F+ Y+ KY+ Sbjct: 188 ---AFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTNNEFFDYDAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR-KVFWLEINVQPGM 268 + PA++ + +EV + + + GI R D++ D + KV LEIN PGM Sbjct: 243 QEITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 T S P+ AG +++L +V Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSEIV 327 >gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] Length = 360 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 20/261 (7%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 A K D+ F +LHG GEDG +Q +LELL IPY +G+LASA MDK+ K V + G+ Sbjct: 89 ADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNGVLASAAGMDKVMMKDVFAQAGLA 148 Query: 107 VCPSILVN-----RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLL 155 + N + T DS + ++ P +KP GSS+GI + + + DL Sbjct: 149 QAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPANMGSSVGISKCRSKEELQTAFDL- 207 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212 ++ + ++++E+ V G EL GV+G+ V EIA PK+DFY Y+ KY ++ Sbjct: 208 ---AFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTD 263 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++PA + D YK + +A A +++ G+ R+DF +V E+N PG TP S Sbjct: 264 LIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTE-KGEVLINEVNTMPGFTPFS 322 Query: 273 IFPEMAAYAGYSFRELLLWMV 293 +FP + + G + EL+ +V Sbjct: 323 MFPLLWKHTGVEYPELIEKLV 343 >gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032] gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032] Length = 360 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 16/259 (6%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 A K D+ F +LHG GEDG +Q +LELL IPY +G+LASA MDK+ K V + G+ Sbjct: 89 ADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNGVLASAAGMDKVMMKDVFAQAGLA 148 Query: 107 VCPSILVN-----RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + N + T DS + ++ P +KP GSS+GI + + + + Sbjct: 149 QAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPANMGSSVGISKCRSKEELQTAFDLA 208 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHV 214 ++ + IE+ GV+G+ V EIA PK+DFY Y+ KY ++ + Sbjct: 209 FQYDRRVVVEEGVVGREIEI--GVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTDLI 265 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA + D YK + +A A +++ G+ R+DF +V E+N PG TP S+F Sbjct: 266 IPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTE-KGEVLINEVNTMPGFTPFSMF 324 Query: 275 PEMAAYAGYSFRELLLWMV 293 P + + G + EL+ +V Sbjct: 325 PLLWKHTGVEYPELIEKLV 343 >gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus] gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus] Length = 343 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 158/332 (47%), Gaps = 47/332 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------SVGLV 45 +A+L GG S E +VS+ S + A+ +++ ++ I + + + Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65 Query: 46 LAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 A L PD +AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G V K Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYG--VKK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYS 201 + + LD S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 184 VNGADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257 + E + S N+ +PA + +++ +Q A ++A+GCRG+SR D FL D S + Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFLQDNGS--I 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M AG + EL+ Sbjct: 302 VLNEVNTLPGFTSYSRYPRMMVAAGITLPELI 333 >gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 348 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 139/253 (54%), Gaps = 19/253 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSI 111 + F +LHG GEDG +Q LE+L++PY + IL S+++MDK+ +K+V+ S GVP V + Sbjct: 88 VVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVAMDKITTKRVLESAGVPQVAYKV 147 Query: 112 LVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 V ++ ++ +S P +KP GSS+GI K + L + + ++ Sbjct: 148 FVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGI--SKAESESELREAIQLALQYDSRI 205 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 LIEQ V+ E+ G++G+ DVT V + FY Y+ KY N T +PA++ + Sbjct: 206 LIEQGVNAREIEVGLLGNT--DVTSTLPGEVVKEVAFYDYQAKYIDNNITMAIPAELETE 263 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAY 280 + +++ A A +A+GC G+SR DF L+R ++ E+N PG T S++P + Sbjct: 264 LANKMRAYAENAFKALGCCGLSRCDFF---LTRDGSIYLNELNTMPGFTQWSMYPLLWEN 320 Query: 281 AGYSFRELLLWMV 293 G S+ +L+ +V Sbjct: 321 MGLSYSDLIEKLV 333 >gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L++PY +G++ SA +MDK+ +K ++ + G+P P Sbjct: 97 IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI + + + L ++ + Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYD 214 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + L+EQ +D E+ V+G+ + T E+ V + FY Y KY + +PA +P Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVP 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ ++ + A A+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 274 EDVMQKARDFAKSAYPMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 333 MGLKYSDLIEELIQ 346 >gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135] gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135] Length = 365 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 17/256 (6%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 LK D+ F ++HG GEDG +Q L++++IP SGIL SA+S++K K ++ S +P+ Sbjct: 87 LKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAISINKYFCKLLLKSFNIPLV 146 Query: 109 PSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P I ++ D + + P ++KP GSS+GI + + I + ++ + Sbjct: 147 PFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIGISIAYNETQIEKCIEEAFA 206 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV-- 214 ++ ++IE+++ E+ C V+G+ + + EI + FY Y+ KYS+ V Sbjct: 207 YDL--TVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDFVFYDYDAKYSTAPGNSVVF 264 Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA + +++ AF ++ + RG++R DFL + + V+ EIN PG T +S+ Sbjct: 265 NIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDTDLVYINEINTIPGFTDISM 324 Query: 274 FPEMAAYAGYSFRELL 289 F +M + G + L+ Sbjct: 325 FSKMCEHDGLDYGSLV 340 >gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9313] gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313] Length = 353 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 17/253 (6%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + VLHG GEDG VQ + L+ P+ SG+L SALSMDK+ K ++ G+P P V+ Sbjct: 99 YPVLHGPNGEDGTVQGLFTLMGQPFVGSGVLGSALSMDKLAMKAAFAAAGLPQVPYAAVD 158 Query: 115 RFTM--------DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + ++HL + P +KP GSS+GI + + + L +++S + Sbjct: 159 AADLLETESRQGVAKHLEAKLKYPCFVKPANLGSSVGISKAQNRNELLIGLDKAASLDR- 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++EQ V EL C V+G L V EI +D+Y Y+ KYS S ++PA +P Sbjct: 218 -RIVVEQGVSARELECAVLGKRELQTSVVGEICF-DADWYDYDTKYSENCSHTLIPAPLP 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +++ LA A + + G++R DF ++ +++ EIN PG T S++P + Sbjct: 276 EGVEAQIRTLALQACRCVAAHGMARVDFFYNAARNEIWLNEINTLPGFTSQSMYPMLWEA 335 Query: 281 AGYSFRELLLWMV 293 +G + EL+ +V Sbjct: 336 SGVTLEELVSQLV 348 >gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] Length = 348 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP V ++ + +++ ++ P +KP GSS+GI K Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204 + L + + ++LIEQ V E+ G++G+ ++ T+ D FY Y+ Sbjct: 186 ENEAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P ++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 426 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------------------DVD 39 +A+L GG SSE +VS S AL+ + VS D D Sbjct: 55 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114 Query: 40 RSVG---------------LVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + V + L +K DL F V+HGN GEDG VQ + +LL+ PY S Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM---DSQHLISPPYVIKPLKGGS 137 I ASA++ DK +K++++ G+ P ++V NR + I +KP K GS Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIA 193 S+GI + + L + +++ ++L+EQ +D E+ ++G+ + + + Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDY--KILVEQGIDHPQEVEISILGNEHPVASKLGAVR 292 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+ D FY+YE K+ + LP K+P + +E+ +A A++ +G +G++R DFL D Sbjct: 293 VPEGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD 352 Query: 252 PLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S V +L E N PG T +S++P+M +G + +L+ +++ Sbjct: 353 --SNNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQ 394 >gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 22/257 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG +GEDG +Q + E L +PY G+LASA+ MDK K + G+ V P Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLQVGPWE 170 Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +I + D + ++ P +KP + GSS GI + + + + ++ ++ Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213 ++++E + G E+ C V+ ++P ++ FY +E KY +T Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGAAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288 Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P + + ++ LA A +A+ G+ R DF F P R V EIN PG TP+S Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347 Query: 273 IFPEMAAYAGYSFRELL 289 ++P M G S+ +L+ Sbjct: 348 MYPAMWERTGLSYDDLI 364 >gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 22/257 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D+ F +LHG +GEDG +Q + E L +PY G+LASA+ MDK K + G+ V P Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQATGLQVGPWE 170 Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +I + D + ++ P +KP + GSS GI + + + + ++ ++ Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213 ++++E + G E+ C V+ ++P ++ FY +E KY +T Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGAAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288 Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P + + ++ LA A +A+ G+ R DF F P R V EIN PG TP+S Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347 Query: 273 IFPEMAAYAGYSFRELL 289 ++P M G S+ +L+ Sbjct: 348 MYPAMWERTGLSYDDLI 364 >gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +A+L GG S E +VS+ S K A+ ++ ++ I + RS Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 43 -----------GLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 GL++ K D F+VLHG GEDG +Q + EL IPY + Sbjct: 66 SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G +++N + + ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + LD ++ + ++LIEQ V G+E+ C V+G+ + +V +I++ F Sbjct: 186 NEDE--LDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243 Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S N+ ++PA + + ++Q A ++A+GC+G+SR D R + Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQENGR-II 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M A AG + L+ Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLI 333 >gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] Length = 330 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38 +A++ GG SSE +SL S S ++ + + + D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V H D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K Sbjct: 65 SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122 Query: 99 VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + GV + SI L T+ + +++ P +KP GGSS G+ +K+ +I + Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAI 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ G ++++E ++DG E+TCG V G + +TE+ V ++F+ ++ KY+ Sbjct: 183 --AKAFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEV-VTDNEFFDFDAKYNG-Q 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT Sbjct: 239 VDEITPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG ++++ ++ED Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322 >gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] Length = 378 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S AL+ + VS + G++L + Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKD-GILLGNEDSQKIFDGEPE 65 Query: 49 ----------------LKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L P D F V+HGN GEDG +Q + +LL PY S Sbjct: 66 DQVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD---SQHLISPPYVIKPLKGG 136 I ASA+S DK +K+++S G+ P ++V NR + + +KP K G Sbjct: 126 NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 186 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 243 Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 244 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 303 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D S V +L E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 304 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 349 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 149/300 (49%), Gaps = 22/300 (7%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 ISS + S + K A L DA K ++ G + D+ F VLHG FGEDG Sbjct: 53 ISSMEDGSWLNSKTSAYILPDATKKCIMVET----GGEYKEVHVDVVFPVLHGLFGEDGT 108 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------- 120 VQ +LEL +IPY G+LASA+ MDK+ +K VV G+ V + + Sbjct: 109 VQGLLELAKIPYVGCGVLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIE 168 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P IKP GSS G+ + + +L+ + H ++L+E+ + G E+ Sbjct: 169 KIEGRFDYPVFIKPSNAGSSRGVSKALDREELKKGILE--ALKHDRKVLVEETIVGHEVE 226 Query: 179 CGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV+G DVT V + + FY Y+ KY L+S +L +K+P + +++ A Sbjct: 227 CGVLGRPG-DVTASGVGEIKSAATFYDYDAKY-KLDSLTLLDSKLPDGVREKLPEYAKKI 284 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G+SR DF F ++ + EIN PG T +S++P + AG ++L+ ++E Sbjct: 285 FTALDGFGLSRVDF-FAREDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIE 343 >gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] Length = 351 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 51/335 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S E EVSL+S ++ +A A F V+ + + R Sbjct: 17 LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75 Query: 41 ------SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + L L+ L+P D+ F +LHG FGEDG VQ +L+LL +P+ S +L SA+ M Sbjct: 76 PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135 Query: 92 DKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIV 143 DK K V ++ G+P P L+ R + D + +++ P +KP GSS+GI Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGD----ASLDVTEIAVPKSD 198 + + L ++ ++ ++L+E+ EL GV+G+ AS+ V EI +S Sbjct: 196 ADDPEGLREALETAARYDR--RVLVERGLARARELEVGVLGNDAPRASV-VGEIRY-ESL 251 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y KY+ + ++PA IP ++ Q LA A +A+ G++R DF +++ Sbjct: 252 FYDYSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELY 309 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 EIN PG T S+FP++ +G + L+ ++ Sbjct: 310 LNEINTMPGFTRTSMFPKLWEASGVPYDALITQLI 344 >gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9303] gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303] Length = 353 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 133/253 (52%), Gaps = 17/253 (6%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + VLHG GEDG VQ + L+ P+ SG+L SALSMDK+ K ++ G+P P V+ Sbjct: 99 YPVLHGPNGEDGTVQGLFTLMGQPFVGSGVLGSALSMDKLAMKAAFAAAGLPQVPYFAVD 158 Query: 115 R---FTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +S+ ++ P +KP GSS+GI + + + L +++S + Sbjct: 159 AADLLDTESRQGVAKNLEAKLKYPCFVKPANLGSSVGISKAQNRNELLIGLDKAASLDR- 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++EQ V EL C V+G L V EI +D+Y Y+ KYS S ++PA +P Sbjct: 218 -RIVVEQGVSARELECAVLGKRELQTSVVGEICF-DADWYDYDTKYSENCSHTLIPAPLP 275 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +++ LA A + + G++R DF ++ +++ EIN PG T S++P + Sbjct: 276 EGVEAQIRTLALQACRCVAAHGMARVDFFYNAARNEIWLNEINTLPGFTSQSMYPMLWEA 335 Query: 281 AGYSFRELLLWMV 293 +G + EL+ +V Sbjct: 336 SGVTLEELVSQLV 348 >gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6] gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6] Length = 382 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG +Q +LEL + Y +G+LASA+ MDK K V S G+ V P + Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYV 175 Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V ++ D + + + P +KP + GSS+GI K D LD + H Sbjct: 176 AVTDRQWQKDPEAVRKQVDRLGFPVFVKPARAGSSMGI--SKVDSLEGLDAAIEEARRHD 233 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214 +L+IE + G E+ C V+ D ++P +FY + KY ++ + Sbjct: 234 LKLVIEAGIVGREIECAVLEGRGTDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLS 293 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA IP + V+ LA A A+G G+SR DF + P + EIN PG TP S++ Sbjct: 294 CPADIPDEAIARVRELAAAAFDAVGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMY 352 Query: 275 PEMAAYAGYSFRELL 289 P+M A +G + EL+ Sbjct: 353 PQMWAKSGLGYAELI 367 >gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] Length = 355 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 18/292 (6%) Query: 13 EVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 E + + G+ S ++D + + + D S L K DL F VLHG GEDG +Q Sbjct: 46 EGNWAKGEQIKSEIKDQNELRFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGF 105 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP--- 126 LE+++I Y + +L+SA MDK+ KQ+ ++ +P P +T + + +I Sbjct: 106 LEIMDIAYVGNNVLSSAAGMDKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVND 165 Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGV 181 P +KP GSS+GI + + + ++ ++ +++IEQ V E+ V Sbjct: 166 NLKYPVFVKPANLGSSVGISRCNDEAELVKGIEEALKFDK--RIVIEQGAVGAKEIEVAV 223 Query: 182 MGDASLDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 +G + T+ + + ++FY YE KY+ S +PA I ++Y E +++A A +A Sbjct: 224 LGYNEVKTTDPGEIVNISTTEFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRA 283 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 I G+ R+DF + ++F E+N PG TP S+FP + A S+ E++ Sbjct: 284 ISGSGLVRADFFYTK-EGEIFINEVNTMPGFTPFSMFPSLWANMNVSYPEVI 334 >gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 132/254 (51%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L++PY +G++ SA +MDK+ +K ++ + G+P P Sbjct: 97 IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P IKP GSS+GI + + + L ++ + Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFIKPANMGSSVGITRAENREELQNAL--QEAYRYD 214 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + L+EQ +D E+ V+G+ + T EI V + FY Y KY +PA IP Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEI-VKEEAFYDYNAKYIDNTIQMAIPANIP 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++ + A A+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 274 EEVMQKARDYAKSAYTMLGGSGLSRIDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 333 MGLKYGDLIEELIQ 346 >gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 132/253 (52%), Gaps = 12/253 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D AF VLHG GEDG VQ +L+L IP+ G+L+SA+ MDK + ++ S GV V SI Sbjct: 98 DAAFPVLHGRNGEDGTVQGMLKLAGIPFVGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSI 157 Query: 112 LVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ ++ + P +KP + GSS GI + + ++ +++ + ++ Sbjct: 158 SADKAMLLKDILNKAETLRYPVFVKPARAGSSFGISRVIDRAELEKAII--NAFEYDSKI 215 Query: 167 LIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +IE+ +DG E+ C ++G+ +L +V EI + +S + Y KY+ S +PA+I Sbjct: 216 VIEENIDGFEVGCAILGNDNLVIGEVDEIEL-QSGIFDYNEKYTLKTSKIHMPARIDTVT 274 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + ++ A + + A+ C G +R D P VF E+N PG T S +P M G Sbjct: 275 AERIKDTARILYNALCCTGFARVDMFLTPKGEIVFN-EVNTIPGFTAHSRYPNMLRGVGL 333 Query: 284 SFRELLLWMVEDA 296 SF ++ ++ A Sbjct: 334 SFASIVERLIRMA 346 >gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] Length = 330 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38 +A++ GG SSE +SL S S ++ + + + D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V H D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K Sbjct: 65 SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122 Query: 99 VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + GV + SI L T+ + +++ P +KP GGSS G+ +K+ +I + Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAI 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ G ++++E ++DG E+TCG V G + +TE+ V ++F+ ++ KY+ Sbjct: 183 --AKAFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEV-VTDNEFFDFDAKYNG-Q 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT Sbjct: 239 VDEITPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG ++++ ++ED Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322 >gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 327 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 156/311 (50%), Gaps = 24/311 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 19 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117 GEDG ++ +L+L +PY +S L+ DK +K V+ G+P + + +RF+ Sbjct: 79 GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138 Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D L P ++KP +GGS LG V++ ++P ++ +++ L+E Sbjct: 139 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDGPALPAAMVGCFAYDS--TALVE 193 Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +Y+ G ++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ + Sbjct: 194 RYLPGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLDTEVAE 252 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V +A AH A+G R +SR D + D + L +NV PGMT S+ P A A F Sbjct: 253 AVATVAVAAHTALGLRDLSRVDLIVD-ADHQPHVLGVNVAPGMTETSLLPLAAQAASLDF 311 Query: 286 RELLLWMVEDA 296 ++ +V A Sbjct: 312 GRMIGTLVSRA 322 >gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211] gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211] Length = 348 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 162/332 (48%), Gaps = 47/332 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+ER+VS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+++MD Sbjct: 68 NDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V++S G+P P + V + + ++ P KP GSS+GI Sbjct: 128 KITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGI----- 182 Query: 147 DQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYS 201 +S D L+S+ ++ + ++LIEQ V+ E+ G++G +A + V FY Sbjct: 183 SKSENQDELRSALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PAK+ D+ +++ A A AIG G+SR DF + ++ E Sbjct: 243 YEAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTD-KGEILLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + G S+ +L+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWENMGISYTDLIEKLV 333 >gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] Length = 367 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+E EVSL S K + L+ F V I ++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65 Query: 40 --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 RS+ ++ L +P D+ F ++HGN GEDG +Q +L + + Sbjct: 66 RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIK 131 P+ G+L S+ MDK +K+++ G+ V P I + +R + + ++ P IK Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLD 188 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVTNESEFKAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEQPLASP 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI + S FY+Y KY N V+ PA + +++ +++ +A A++A+ C G+SR D Sbjct: 244 CGEIVLHDS-FYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F V EIN PG T +S++P++ G +++ L+ ++E Sbjct: 303 -VFLTEDNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIE 348 >gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 372 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 132/265 (49%), Gaps = 21/265 (7%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G+V D+ F +LHG FGEDG VQ +LE+ ++ Y G+ ASA+ MDK K S Sbjct: 96 GIVTRTAPVDVVFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFES 155 Query: 103 CGVPVCP-SILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ V P ++ NR D + ++ P +KP + GSS GI K D L Sbjct: 156 AGLEVGPYEVVTNREWEHEDREQILERVLKLGFPLFVKPTRAGSSFGI--TKVDSVEELV 213 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELK 205 + H +++IE + G E+ C V+ ++ EI V D FY +E K Sbjct: 214 PAIEEARRHDPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAK 273 Query: 206 YSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 Y S +S V PA +P D+ + ++ LA A A+ G+SR+DF + R V E+N Sbjct: 274 YVSESSAVTVCPANLPQDVQERLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNT 332 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289 PG TP+S++ M G S+ +L+ Sbjct: 333 MPGFTPISMYKTMWENTGISYTDLI 357 >gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 134/250 (53%), Gaps = 15/250 (6%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 A LK D+ F ++HG+FGEDG +Q ++ ++ +PY S IL S++ MDK +K+++ G+P Sbjct: 97 ALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPYVGSSILGSSICMDKTITKRLLRDSGLP 156 Query: 107 VCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 V + + + +S P+ IKP+ GSS+G+ + L ++ Sbjct: 157 VASFKTFSHYERSNITFVSFYNMFGLPFFIKPVNQGSSIGVSKVTNQNVFNKAL--DVAF 214 Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSD---FYSYELKYSSLNSTHV 214 +GD++++E + G EL C V+G+ S EI + ++ FY+Y KY S + + Sbjct: 215 AYGDKIMVEPCIVGRELECAVLGNDDPISSVCGEIVINSNNDNGFYTYYKKYISSTTEVI 274 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA I I +V+ + A Q + C G++R D +F L+ ++ E+N PG T S++ Sbjct: 275 IPALITNIISDKVRHYSICAFQTLSCSGMARID-MFLTLNNQIIINEVNTLPGFTSHSMY 333 Query: 275 PEMAAYAGYS 284 P++ G S Sbjct: 334 PKLWEATGIS 343 >gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 361 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LEL+ IPY +G+LAS+ MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R + + + P +KP GSS+GI K + + ++ ++ Sbjct: 155 SFIRSAWEKNREEAYDKVEEKLGYPCFVKPANLGSSVGINKCKNREELESAFEEAFQFDR 214 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ + G E+ GV+G+ + + VPK DFY Y+ KY ++ ++PA++ Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331 Query: 281 AGYSFRELL 289 G + EL+ Sbjct: 332 TGLPYPELI 340 >gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102] gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102] Length = 353 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48 + V+ GG S E +VS+ S + A L ++V + +DR G VL+ Sbjct: 8 VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67 Query: 49 LKP----DLA---------------------FNVLHGNFGEDGLVQAILELLEIPYTHSG 83 P DL + VLHG GEDG +Q + EL++ PY +G Sbjct: 68 GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L SA+SMDK K ++ G+ P + + + + P IKP Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L +++ + +L++EQ V EL C V+G +L + + Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATLDP--RLVVEQGVQARELECAVLGGTTLRASVV 245 Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +D+Y YE KY+ ST ++PA +P I + ++ + A A+G G++R DF + Sbjct: 246 GEVRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +V+ EIN PG T S++P + +G + +L+ ++E A Sbjct: 306 DDSRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351 >gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 334 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 153/329 (46%), Gaps = 39/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VS+ S + S + + V +DV D +V P Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q ELL IPY+ SG+L A++ DK + Sbjct: 68 SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153 GV V S+L+ R D I P +KP GSS GI +K DQ P Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209 + ++ D+++IE+Y+ G E++ G + V TE+ V ++F+ Y+ KY+ Sbjct: 188 RV---AFMESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEV-VTSNEFFDYDAKYNG- 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQP 266 + PA++ + + V + + C GI R D++ D R V LEIN P Sbjct: 243 QVEEITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTP 302 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GMT S P+ AG +++L ++E+ Sbjct: 303 GMTATSFIPQQVRAAGLDIKDVLTDIIEN 331 >gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424] gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424] Length = 355 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 46/332 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+E VSL + K+ +A+ + V Sbjct: 6 IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65 Query: 34 --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 S D D S L + K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + + P +KP GSS+GI Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197 ++ + + ++ ++ ++++EQ V E+ V+G + T+ + + + Sbjct: 186 RCNDEKQLIKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y E + +A A +AI G+ R+DF + K+ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTK-EGKI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F E+N PG TP S+FP + A ++ E++ Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEII 334 >gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878] Length = 345 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110 D +LHG GEDG +Q ++E+ IPY I +SAL MDK + V S G+ P+ Sbjct: 91 DAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQSSALCMDKSLTYIVARSAGI-ATPNF 149 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I+ +D L P +V KP + GSS G+ + +++ +P + + ++ ++LIE Sbjct: 150 WIVTADDDIDPGQLTYPVFV-KPARSGSSFGVSKVSREEELPSAVKTAREYD--SKVLIE 206 Query: 170 QYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLD 222 + V E+ C V+G DA L +V +A+ F ++ + S NST ++PA IP + Sbjct: 207 EAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIHQESNPEQGSENSTFIVPADIPDE 266 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 VQ A + ++A+GCRG++R D +F +V E+N PGMT S +P M A AG Sbjct: 267 SRARVQETAKVIYRALGCRGLARVD-MFLKEDGQVVLNEVNTLPGMTSYSRYPRMMAAAG 325 Query: 283 YSFRELLLWMV 293 E++ MV Sbjct: 326 MPLGEVIDRMV 336 >gi|91977855|ref|YP_570514.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5] gi|91684311|gb|ABE40613.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 329 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/324 (29%), Positives = 153/324 (47%), Gaps = 49/324 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV-SQIDVDRSVGL--VLAHLKP-DLAFNV- 57 +L GG S ER VS++S +A +AL DA + D+ V +LAH +P + +F+ Sbjct: 5 ILFGGTSKERLVSVASAQALHAALPDAELWFWNDDDLVHVVAADALLAHTRPFEESFHPA 64 Query: 58 ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 LHG E+G +QA+ E+ +P+T SG AS ++ DK Sbjct: 65 GGGIGPLERALDRAATEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHVAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSI 150 + +K+ + G+ I T+D Y + KP + GSS G+ I Q Sbjct: 125 IAAKRFAAIAGIRAPAGI-----TLDHAERALATYGRLIAKPTRDGSSYGLFFIDAKQ-- 177 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205 DL+ + + LIE +V G+E TCGV+ A +L EI VP + Y+ K Sbjct: 178 --DLVAVRNAAKTEDYLIEPFVCGVEATCGVLEQADGALLALPPVEI-VPADGGFDYKAK 234 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y + ++ + P + ++ + A AH+ +GCRG SRSDF+ + +LE N Sbjct: 235 YLAKSTQEICPGRFTPEVSAVIMDYAVKAHRVMGCRGYSRSDFIV--AADGPIFLETNTL 292 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PG+T S++P+ G SF + L Sbjct: 293 PGLTKASLYPKALKAQGISFDDFL 316 >gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] Length = 364 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/337 (26%), Positives = 166/337 (49%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG-------------LVL 46 + ++ GG+S E E+SL S S+L + + V I VD+ G L+ Sbjct: 5 LMLIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIK 64 Query: 47 AH-------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 H L+ D+ F ++HG GEDG +Q +++++IP +GIL S Sbjct: 65 RHTTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI-------LVNR--FTMDSQHLISPPYVIKPLKGGSS 138 A+S++K K ++ S +PV I ++N+ D + ++ P ++KP GSS Sbjct: 125 AISINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI V I + ++ ++ +++E+++ E+ C V+G+ + + EI V Sbjct: 185 IGINVAYNVSQIEKYIEEAFEYDL--TVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS++ + +PA + + +++ AFL ++ + RG++R DFL Sbjct: 243 DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ E+N PG T +S+F +M + G S+ L+ Sbjct: 303 DTNLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLV 339 >gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9] gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9] gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus thermophilus ND03] Length = 348 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/331 (26%), Positives = 164/331 (49%), Gaps = 45/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP V + + +++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202 + + +DL + + ++LIEQ V E+ G++G+ ++ T+ D FY Y Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+ Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PG T S++P + G S+ +L+ +V Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|296313256|gb|ACZ97544.2| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 301 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 137/251 (54%), Gaps = 17/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F V+HGN GEDG +Q + +LL PY S I ASA++ DK +K++++ G+ P + Sbjct: 52 DFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNISASAMAFDKDLTKKIITQAGIRNTPYV 111 Query: 112 LV---NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 LV NR + + IKP K GSS+GI + + L + +++ + Sbjct: 112 LVTPENRADYSWGRIEEQLGNLTFIKPAKQGSSVGIHRVTNAEEYEAALNDAFKYDY--K 169 Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+EQ +D E+ ++G+ + + + VP+ D FY YE K+ + LP K+ Sbjct: 170 VLVEQGIDRPQEVEISILGNEHPIASKLGAVRVPEDDLFYDYENKFVDASGVVFELPVKL 229 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278 P + E+ +A A++A+G +G++R DFL D S V +L E N PG T +S++P+M Sbjct: 230 PQYLVDEITDMALKAYKALGMKGLARIDFLVD--SNNVPYLGEPNTLPGFTNISLYPQMW 287 Query: 279 AYAGYSFRELL 289 +G S+ EL+ Sbjct: 288 EVSGISYSELI 298 >gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora] gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora] Length = 355 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113 LHG GEDG +Q + L++ P+T SG+L SA+SMDK K ++ G+P P I + Sbjct: 106 LHGPNGEDGTIQGLFTLMQKPFTGSGVLGSAVSMDKQAMKACFTAVGLPQVPYICLDILE 165 Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 N+ + + P +KP GSSLGI Q + L +S+++ +L++ Sbjct: 166 LERIPNKLVNRIEKSLGYPCFVKPANLGSSLGISKCNSRQELISGLKLASAYD--SRLVV 223 Query: 169 EQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 E+ V E+ C V+G + L + EI ++++Y Y KY+ +S V+PA + + + Sbjct: 224 ERAVIAREIECAVVGKSVLRASVLGEICF-ENEWYDYTTKYTKGSSYMVIPAHLSEETTR 282 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 + L+ A +A+G GI+R DF + + ++ EIN PG T S++P + +G + Sbjct: 283 RARELSLEACRAVGAYGIARVDFFYVESTNNLWVNEINTLPGFTEQSMYPMLWMSSGLTL 342 Query: 286 RELLLWMVEDA 296 EL+ +++ A Sbjct: 343 NELVHQLIKLA 353 >gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 371 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 174/351 (49%), Gaps = 68/351 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG SSE ++SL S K+ A++ +++ I +D++ Sbjct: 14 VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73 Query: 42 ----------VGLVLAH-----LKPD--------LAFNVLHGNFGEDGLVQAILELLEIP 78 V +VL PD + F +LHG++GEDG +Q +L L+ P Sbjct: 74 LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYV 129 + +L SA+SMDK SK+++S G+ + +T D + I P Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFA---YTKDRKGNIDYEKVKENLGTPVF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----A 185 +KP GSS+GI + + + + + ++ + ++++IE+ + G E+ C V+G+ A Sbjct: 191 VKPANQGSSVGISKVYEKKKFYMAV--DEAFRYDNKIVIEEEIKGREIECAVLGNEDPIA 248 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 SL E+ S FYSY+ KY +NS V +PA++ D ++V++ A A +A+ C G Sbjct: 249 SLP-GEVLFTDS-FYSYDAKY--INSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNG 304 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++R DF F +F EIN PG T +S++P++ +G +++L+ M+ Sbjct: 305 VARVDF-FLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMI 354 >gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 167/338 (49%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S E VS+ S A+ ++ ++ I + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 39 ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DRS GL++ ++P D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 +S + MDK + VV + G+ V P IL ++++ + P +V KP + GSS G+ Sbjct: 126 SSVICMDKALAYTVVKNAGITV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + K + + + ++ ++ ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 184 VCKAEELQAAIEEARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241 Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ + S N+ +PA +P ++ +++Q A ++ +GCRG++R D LF Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARID-LFLREDGC 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG T S +P M AG++ E+L ++E Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338 >gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens] gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens] Length = 328 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP----DL 53 +A++ GG SSE +VSL S + S + + + +DV D V L H P D Sbjct: 5 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64 Query: 54 AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +FN +HG GE+G++Q EL+ IPY+ +LASAL+ DK + + Sbjct: 65 SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 S G+ V SIL+ ++ I+ P +KP GSS G+ +K DQ P Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAP---A 181 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++E ++DG+E+T G+ +TE+ V ++F+ Y KY+ Sbjct: 182 LRKAFMESSEVMVESFLDGVEITQGIYKTREKSVPFPITEV-VTSNEFFDYNAKYNG-EV 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGM 268 + PA+I ++ ++V + + + GI R D++ + + + LE+N PGM Sbjct: 240 DEITPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGM 299 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG + +L +VE+ Sbjct: 300 TVTSFVPQQVRAAGLDIKNVLSDIVEN 326 >gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] Length = 374 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 19/262 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q + E++ +PYT G+ ASAL MDK +KQV+ G+PV Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166 Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ + + P P +KP + GSSLG+ ++ + ++ + H Sbjct: 167 VITDYAWRHRESAVPAEVLDFGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224 Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV- 214 ++++E V G E+ C V+ A+P Y +E KY + ++ + Sbjct: 225 PKVIVEAGVVGAREVECAVLEGRDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLS 284 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA+IP + K + A A + + G++R DF + + ++ EIN PGMTP S+F Sbjct: 285 IPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLF 344 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P M + G +++L+ ++E A Sbjct: 345 PGMWEHMGMPYQDLVTELIEIA 366 >gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] Length = 389 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 36/284 (12%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 L H+ D+ F VLHG GEDG +Q + E+L +PY G+LASA SMDK +K ++ + G+ Sbjct: 102 LGHI--DVVFPVLHGPNGEDGTIQGLFEMLGVPYVGCGVLASAASMDKHYTKVLLDNAGI 159 Query: 106 PVCPSILVNR--FTMDSQHL--------------ISPPYVIKPLKGGSSLGIIVIKK--- 146 V I ++ F D+Q + P +KP + GSS G+ + + Sbjct: 160 AVANGITLDTRAFDADTQFAAQGETLLNMVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGD 219 Query: 147 --DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 + L + H ++L+EQ VD E+ C V+ + + ++P Sbjct: 220 AVSGAAQLAAAVYEAAQHDWRVLVEQGVDAREIECAVLCPVAGQPVQASLPGEIVLDRRA 279 Query: 196 --KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY ++ KY ++HV +PA +P D+ + V+ A A +A+ G+SR D F Sbjct: 280 EGDDQFYDFDSKYMDKQASHVEVPAHLPEDVLERVRETAIKAFKAVDGMGLSRVDS-FVT 338 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P+ +G + EL+ ++E A Sbjct: 339 ADGDVIVNEINTMPGFTSISMYPKAWEASGLPYGELITTLIEGA 382 >gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium] Length = 343 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 168/338 (49%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S E VS+ S A+ ++ ++ I + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65 Query: 39 ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DRS GL++ ++P D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 +S + MDK + VV + G+ V P IL ++++ L+ P +V KP + GSS G+ Sbjct: 126 SSVICMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDLVYPVFV-KPARSGSSFGVNK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + K + + + ++ ++ ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 184 VCKAEELQAAIREARKYD--SKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFF 241 Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ + S N+ +PA +P ++ + +++ A ++ +GCRG++R D LF Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARID-LFLREDGC 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG T S +P M AG++ E+L ++E Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338 >gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 372 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 21/256 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F +LHG FGEDG VQ +LE+ ++ Y G+ ASA+ MDK K S G+ V P Sbjct: 105 DVVFPLLHGPFGEDGTVQGLLEMADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 164 Query: 111 ILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ NR D + ++ P +KP + GSS GI K D L + H Sbjct: 165 VVTNRQWEHEDREQILERVLKLGFPMFVKPTRAGSSFGI--TKVDSVEELVPAIEEARRH 222 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNST-H 213 +++IE + G E+ C V+ ++ EI V D FY +E KY S +S Sbjct: 223 DPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVT 282 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 V PA +P D+ + ++ LA A A+ G+SR+DF + R V E+N PG TP+S+ Sbjct: 283 VCPANLPQDVQERLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNTMPGFTPISM 341 Query: 274 FPEMAAYAGYSFRELL 289 + M G S+ +L+ Sbjct: 342 YKTMWENTGISYTDLI 357 >gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] Length = 331 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53 +A++ GG SSE +VSL S + S + + + +DV + G + A K D Sbjct: 8 IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67 Query: 54 AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +FN +HG GE+G++Q LEL+ +PY+ +L SAL+ DK + + Sbjct: 68 SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127 Query: 101 SSCGVPVCPSILVN-RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ V SIL+ + D + + + P IKP GSS G+ +K I L + Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++E ++DGIE+T G+ +TE+ V ++F+ Y KY+ Sbjct: 188 --AFMESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEV-VTSNEFFDYNAKYNG-EVD 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA+I ++ +V + + + GI R D++ D V LE+N PGMT Sbjct: 244 EITPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|329848165|ref|ZP_08263193.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19] gi|328843228|gb|EGF92797.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19] Length = 329 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 146/326 (44%), Gaps = 43/326 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKP-------- 51 +L GG S ER VS++S +A A AL DA D +V + AH +P Sbjct: 5 ILFGGTSRERLVSVASAQALAHALPDADLWFWDHDGTVNVTSPAALHAHDRPFELPFRAD 64 Query: 52 -----------DLAFNV-------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 DLA + LHG E+G Q + E +P+T SG AS L+ DK Sbjct: 65 GILIGDMAGSLDLAVHENRVLVLGLHGGSAENGEFQVLAEARGVPFTGSGSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 +K+ GV S+ ++ H + KP + GSS G+I + Q D Sbjct: 125 TAAKRFAGLAGVHSPSSVSLDELDEAFSHYGK--LIAKPAQDGSSFGLIYVNSSQ----D 178 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208 L +IE +V G E TCGV+ A +L EI VP + Y+ KY + Sbjct: 179 LAAVRREAKTTAYVIEPFVTGPEATCGVLEQADGSLIALPPVEI-VPAEGTFDYKSKYLA 237 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + + PA+ +I +++ L+ AH+A+ CRG SRSDF+ +LE N PG+ Sbjct: 238 AATQEICPARFASEIMAQLRDLSIKAHKAMSCRGYSRSDFIIS--DHGPVYLETNTLPGL 295 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 T S++P+ G F + L +E Sbjct: 296 TKASLYPKSLKAQGIEFVDFLNGQIE 321 >gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] Length = 348 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 49/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----SQI-DVDRSVGLVLAHLKPD-- 52 + +L GG S+EREVS+ S ++ A+ F V SQ+ D ++ L KPD Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQEL---SQKPDDN 62 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F VLHG GEDG +Q LE+L++PY + IL+S Sbjct: 63 EKLMTNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSS 122 Query: 88 ALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGI 141 +++MDK+ +K V++S G+P V ++ + +D + + P +KP GSS+GI Sbjct: 123 SVAMDKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD 198 K + + L + + ++LIEQ V E+ G++G+ S+ T E+ V Sbjct: 183 --SKAETEMELKEAIGLALKYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEV-VKDVA 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY T +PA+I +I KE++ A A +A+G G+SR DF ++ Sbjct: 240 FYDYQAKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMY 298 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +V+ Sbjct: 299 LNELNTMPGFTQWSMYPLLWENMGLVYSDLIEELVK 334 >gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] Length = 353 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 17/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---VPVC 108 DL + VLHG GEDG VQ + L+ P+ SG+L SA+ MDK+ K ++ G VP Sbjct: 96 DLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSGVLGSAVGMDKLAMKAAFAAAGLSQVPYM 155 Query: 109 ---------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P L T Q L P +V KP GSS+GI + L Q+++ Sbjct: 156 GLTAADLEDPERLEQLLTRVEQELGYPCFV-KPANLGSSVGITKANNRDELLAGLHQAAA 214 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPA 217 + +LL+EQ V+ EL C V+G L + + + +D+Y YE KY+ S ++PA Sbjct: 215 LD--PRLLVEQGVNARELECAVLGRRHLRASVVGEIRFDADWYDYETKYTEGRSHTLIPA 272 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + +++Q +A A A+ G +R D +D S +++ EIN PG T S++P + Sbjct: 273 PLPALVSQQIQAMAIRACHAVHAFGQARVDVFYDETSGEIWLNEINTLPGFTSQSMYPTL 332 Query: 278 AAYAGYSFRELLLWMVEDA 296 A +G +L+ +V+ A Sbjct: 333 WAASGIPLPQLVAELVDTA 351 >gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 362 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 16/257 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F VLHG +GEDG +Q +LE+ +PY +G+LASA MDK +K+++++ G+PV Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLEMAGVPYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFH 161 Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 +L R T + H + P +KP +GGSS+GI + ++P + ++ W+ +++ Sbjct: 162 VLRQRETEVPPEVLHRLGLPLFVKPARGGSSIGITRVTDLAALPAAIAEARRWD--PKVI 219 Query: 168 IEQYVDGIELTCGVMG--DASLDVTEIAV------PKSDFYSYELKYSSLNSTHVLPAKI 219 IE V G E+ GV+ D ++ + IA + FY +E KY + + +PA + Sbjct: 220 IEAAVIGREVEIGVLERPDGTVHASAIAEIEMAADAEHAFYDFETKYLDDRAQYTVPADL 279 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + + LA A A +G++R DF F V E+N PG T S++P M A Sbjct: 280 TEEQTSAIAELAVRAFHAFDGQGLARVDF-FQTAEGPVIN-EVNTMPGFTSTSMYPRMWA 337 Query: 280 YAGYSFRELLLWMVEDA 296 +G + ELL +++ A Sbjct: 338 ESGIGYAELLSLLIDTA 354 >gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum] Length = 355 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 17/262 (6%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 ++ D F +LHG GEDG +Q + EL IPY G + A+ MDK + V+ G Sbjct: 92 TFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIPYVGCGHMRFAICMDKEMAHIVMEHAG 151 Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + P + V + ++ + P IKP GSS GI ++ + Sbjct: 152 ISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIKPANAGSSFGIHRMESFDGFEEAMKD 211 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211 + + ++++E ++G E+ VMG+ S+D E A P F+ YE KY ++S Sbjct: 212 AFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 PA+I +++E + +A A++A+ C+G++R D P + E+N PG T Sbjct: 269 HIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMFVTP-EDTIILNEVNTIPGFTDT 327 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S +P M AG F EL+ +V Sbjct: 328 SRYPTMMKEAGIPFPELIDKLV 349 >gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 389 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 132/268 (49%), Gaps = 21/268 (7%) Query: 45 VLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 VL + P D+ +LHG FGEDG VQ +LEL ++ Y G+L SA+ MDK K V Sbjct: 115 VLESVGPVDVVLPLLHGPFGEDGTVQGMLELADLRYVGVGVLGSAVGMDKHYMKLVFEGH 174 Query: 104 GVPVCP--SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 G+PV P ++ ++ D + + P +KP + GSSLGI K LD Sbjct: 175 GLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVFVKPTRAGSSLGI--SKVSDVGDLDRA 232 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYS 207 + + H +++IE + G E+ C V+G ++P +FY +E KY Sbjct: 233 MAEALKHDPKVIIEAGIVGREIECAVLGGHGDTPARASLPGEITMTGSAHEFYDFEAKYL 292 Query: 208 SLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + PA++ V+ +A A A+G G+SR D +F V EIN P Sbjct: 293 DDASAQLSCPAELDETTTATVREVAVRAFDAVGGEGLSRVD-VFVQEDGAVVVNEINTMP 351 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G TP+S++P M +G S+ EL+ +++ Sbjct: 352 GFTPISMYPRMWERSGVSYTELISELID 379 >gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] Length = 364 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 166/337 (49%), Gaps = 50/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG-------------LVL 46 + ++ GG+S E E+SL S S+L + + V + VD+ G L+ Sbjct: 5 LMLIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIK 64 Query: 47 AH-------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 H L+ D+ F ++HG GEDG +Q +++++IP +GIL S Sbjct: 65 RHTTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI-------LVNR--FTMDSQHLISPPYVIKPLKGGSS 138 A+S++K K ++ S +PV I ++N+ D + ++ P ++KP GSS Sbjct: 125 AISINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI V I + ++ ++ +++E+++ E+ C V+G+ + + EI V Sbjct: 185 IGINVAYNVSQIEKYIEEAFEYDL--TVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY Y+ KYS++ + +PA + + +++ AFL ++ + RG++R DFL Sbjct: 243 DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + ++ E+N PG T +S+F +M + G S+ L+ Sbjct: 303 DTNLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLV 339 >gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 342 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 54/335 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32 + +L GG+S E +SL S + A +L E+ + Sbjct: 3 IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62 Query: 33 VSQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + + DR+V GL++ ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 63 PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGI 141 +SAL MDK + V S G+ N +T+ ++ L ++ P +KP + GSS G+ Sbjct: 123 SSALCMDKSLAYVVARSAGIATP-----NFWTVAAKELPDADLTYPVFVKPARSGSSFGV 177 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKS 197 + + +P + +S ++ ++LIEQ V G E+ C V+G+ +V IA+ Sbjct: 178 SKVTQADDLPSAVEVASQYDS--KVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHG 235 Query: 198 DFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F + E + S NST ++PA IP V+ A ++A+GC G++R D LF Sbjct: 236 FFRIHQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVD-LFLTED 294 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 V E+N PG+T S +P M A AG S E++ Sbjct: 295 GAVVLNEVNTLPGLTSYSRYPRMMAAAGLSMGEVI 329 >gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353] Length = 353 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 165/344 (47%), Gaps = 54/344 (15%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35 +L GG S+EREVS+ S ++ A+ +D F +Q Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGII 142 K+ +K+V+ S G+ P + + +D + L ++ P KP GSS+GI Sbjct: 133 KITTKRVLESAGIAQVPYVAL----VDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGI- 187 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 K + L ++ + ++L+EQ V E+ G++G+ + T E+ V F Sbjct: 188 -SKSENRAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAF 245 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY T +PAKI ++ +++ A A +A+G G+SR DF + +VF Sbjct: 246 YDYEAKYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFL 304 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 E+N PG T S++P + G ++ +L L+ + E+A R Sbjct: 305 NELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 345 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 12/249 (4%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 V+HG +GEDG +QA L++ I Y +G+L+SA+ MDK+ S + + + N+ Sbjct: 94 VVHGTYGEDGTIQAFLDVAGISYIGNGLLSSAICMDKVTSNDIFEKNKLRQAKYLYTNKE 153 Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D L I P ++KP GSS+G+ + + + L++ ++ ++L+E+ Sbjct: 154 GLDDNFLDKCIEEIGLPLIVKPSANGSSVGVNKVTTRKELLDSGLEALKYDK--KVLVEE 211 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++G E+ V+GD + DV++ A SD F Y+ KY S ++ LP K+ D KE Q Sbjct: 212 LIEGQEIEFAVVGDMNPDVSKPAAYISDHTFLDYDAKYFSKSTKESLPYKLDEDKLKEAQ 271 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287 + A GC G +R D +F + EIN PG TP S F + SF E Sbjct: 272 EFVKKCYVACGCEGFARVD-IFYANDGNFYVNEINTFPGFTPSSFFARLCELMYDKSFSE 330 Query: 288 LLLWMVEDA 296 LL ++ED Sbjct: 331 LLDILIEDG 339 >gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] Length = 372 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 21/256 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110 D+ F +LHG FGEDG VQ +LE+ ++ Y G+ ASA+ MDK K S G+ V P Sbjct: 105 DVVFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 164 Query: 111 ILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ NR D + ++ P +KP + GSS GI K D L + H Sbjct: 165 VVTNRQWEHEDREQILERVLKLGFPMFVKPTRAGSSFGI--TKVDSVEELVPAIEEARRH 222 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNST-H 213 +++IE + G E+ C V+ ++ EI V D FY +E KY S +S Sbjct: 223 DPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVT 282 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 V PA +P D+ ++ LA A A+ G+SR+DF + R V E+N PG TP+S+ Sbjct: 283 VCPANLPQDVQDRLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNTMPGFTPISM 341 Query: 274 FPEMAAYAGYSFRELL 289 + M G S+ +L+ Sbjct: 342 YKTMWENTGISYTDLI 357 >gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 338 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 137/270 (50%), Gaps = 15/270 (5%) Query: 35 QIDVDRSVGLVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 Q + DR G + A L D+AF +LHG GE G VQ +L+ IP+T +L+SAL Sbjct: 73 QFNYDRP-GFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDVLSSALC 131 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQS 149 MDK + + + G+ + L+ + P ++KP + GSS G+ ++ D+ Sbjct: 132 MDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYVRNYDEL 191 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKY 206 + L ++ ++LIE Y+ G E+ G++ D L V+E+ + + ++ KY Sbjct: 192 LNACLF---AFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFDFQEKY 248 Query: 207 SSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++T LP + P + KEVQRL LA + C SR DF F ++F E+N Sbjct: 249 HP-HATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDF-FVTEDHRIFLNEVNTI 306 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PG T S +P M AG S+ EL+ M+ED Sbjct: 307 PGFTSSSRYPGMLDRAGVSYPELITKMIED 336 >gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanB ligase gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis] gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|741410|prf||2007289A D-Ala lactate ligase Length = 342 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ ++PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P MAA AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured actinobacterium HF0200_46I24] Length = 364 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 21/258 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 ++ F +LHG +GEDG +Q +LEL + Y +G+ ASA+ MDK+ ++ + ++ G+P Sbjct: 96 EVVFPLLHGPYGEDGTIQGLLELAGLAYVGAGVSASAVGMDKVLARAIFAASGLPQTQYS 155 Query: 112 LVNRF-----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 ++ R ++ +H P +KP GSS+GI + Q + L +S + Sbjct: 156 VIMRSEWRREQAPVLERLEEEH--DYPLFVKPANLGSSVGISKVHDRQGLHAALELASRF 213 Query: 161 NHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + +L+IE+ V+ EL C ++G+ + V EI +P +FY Y KY S V+P Sbjct: 214 D--TKLIIERSVENARELECAILGNDYPKASGVGEI-IPGGEFYDYTTKYIDERSQLVIP 270 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ LA A +AI C G++R D F V EIN PG TP+S++P+ Sbjct: 271 AVLEKSESEAVQELAIRAFKAIDCSGLARVD-CFMCSDGSVLVNEINTMPGFTPISMYPK 329 Query: 277 MAAYAGYSFRELLLWMVE 294 + A AG + +L+ +++ Sbjct: 330 LWAAAGIDYGDLIDRLIQ 347 >gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] Length = 335 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 157/327 (48%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40 +A+L GG + E +S+ S A L+ F+V +I +VDR Sbjct: 12 IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D F +HG+ GEDG +Q ++L +PYT L S+++M+K +K +V Sbjct: 72 SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131 Query: 101 SSCGVP---VCPSILVNR---FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + G+P V S + + + +D ++ + PY +KP GGSS+G+ K + L Sbjct: 132 N--GIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMS--KVTHAADLQ 187 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDV---TEIAVPKSDFYSYELKYSSL 209 ++ DQ+LIE+++ G E T GV+ D + V TE+ K +F+ +E KY+ Sbjct: 188 EAIEKAFKEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAK-EFFDFEAKYTPG 246 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +T PA I + V ++A + + C G+ R DF+ +++EIN PG T Sbjct: 247 VATETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQT 306 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ A G + ++ + Sbjct: 307 ATSFIPQQVAAMGMKLNDFYTKLIRET 333 >gi|148257414|ref|YP_001241999.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] gi|146409587|gb|ABQ38093.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 329 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 153/327 (46%), Gaps = 45/327 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP-DLAFNV- 57 +L GG + ER VS++S +A + L D+ + D V R G L AH +P + F Sbjct: 5 ILFGGSNKERLVSVASAQALHATLPDSDLWFWEADDAVHRVSGKALVAHARPFEEPFTAD 64 Query: 58 ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 LHG E+G +Q + E+ +P+T S AS L+ DK Sbjct: 65 GPRIGTLADALDRAKAEDRVLVLALHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + +K+ GV V + L + +QH + KP+K GSS G+I + Q Sbjct: 125 VAAKRFAVLGGVTVAEGVSLADAEAALAQH---GRLIAKPVKDGSSFGLIFVNAKQ---- 177 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV---TEIAVPKSDFYSYELKYS 207 DL+ + ++ LIE +V G E TCGV+ D SL EI +P ++Y KY Sbjct: 178 DLVAVRAAAATEEYLIEPFVTGTEATCGVLEQPDGSLIALPPIEI-LPADGAFNYFAKYL 236 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + + P + +I +Q A AH+A+ C G SRSDF+ + +LE N PG Sbjct: 237 ATATKEICPGRFTPEITAALQTEAIKAHRALSCGGYSRSDFIVS--ANGPVYLETNTLPG 294 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294 +T S++P+ A SFR+ L ++ Sbjct: 295 LTAASLYPKALAAQNISFRDFLQQQID 321 >gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] Length = 365 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D + ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRKAVLKAVSRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 315 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|315498872|ref|YP_004087676.1| d-alanine--d-alanine ligase [Asticcacaulis excentricus CB 48] gi|315416884|gb|ADU13525.1| D-alanine--D-alanine ligase [Asticcacaulis excentricus CB 48] Length = 329 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 14/242 (5%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG E+G Q E +P+T SG AS L+ DK+ +K+ + GV I ++ Sbjct: 89 LHGGIAENGEFQVKCEARGVPFTGSGSAASHLAFDKVSAKRFAACAGVSSPAGIALSE-- 146 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D+ V KP + GSS G+I + DL+ LIE +V G E Sbjct: 147 LDAAFAEYGKLVAKPAQDGSSFGLIFVNSTN----DLVAVRDAAKEQPYLIEPFVTGAEA 202 Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 TC V+ +L EI +P + Y KY S + + PA+ ++ E+QRLA Sbjct: 203 TCAVLEQTDGSLIALPPIEI-IPDRGAFDYHSKYLSNKTQEICPARFAPEVIAEIQRLAI 261 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+ CRG +RSDF+ + ++E N PGMT S++P+ A G F E L Sbjct: 262 AAHKALSCRGYTRSDFIVS--DKGPVFIETNTLPGMTASSLYPKALAAQGIGFVEFLHGQ 319 Query: 293 VE 294 V+ Sbjct: 320 VD 321 >gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] Length = 366 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 164/346 (47%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A++ GG S+E +VSL S K + L+ F + I ++ Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65 Query: 40 --------RSVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77 R+V ++ +K D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 PY I++SA MDK +K+++ G+ V P I + ++ H + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + ++ L ++ + ++++E + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEEEFNAAL--EMAFEYDLKVIVESAIVGREIECAVLGNEDPEVSP 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY + V+PA + + ++++A A++ + C G++R D Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVD- 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ AG ++ L+ ++E Sbjct: 303 VFLTQDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIE 348 >gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 374 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q + E++ +PYT G+ ASAL MDK +KQV+ G+PV Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166 Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ + + P P +KP + GSSLG+ ++ + ++ + H Sbjct: 167 VITDYAWRHRESAVPAEVLDFGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224 Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF------------YSYELKYSSLN 210 ++++E V G E+ C V L+ + A P++ F Y +E KY + + Sbjct: 225 PKVIVEAGVVGAREVECAV-----LEGRDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQD 279 Query: 211 STHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + +PA+IP + K + A A + + G++R DF + + ++ EIN PGMT Sbjct: 280 AVSLSIPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMT 339 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P S+FP M + G +++L+ ++E A Sbjct: 340 PFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3] gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 365 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAILKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] Length = 343 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 50/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + VL GG S E EVS+ S ++ + +KV + + Sbjct: 6 LGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINE 65 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 SV + L H K D+ F VLHG +GEDG +Q L+ L+IPY + +L+SA Sbjct: 66 VKASKDRCITESVRVFLDH-KLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAA 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140 MDK K + S +P + + +++ + P +KP GSS+G Sbjct: 125 GMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197 + + + L + ++ +L+ E++V+G E+ C V+G+ ++ + EI +P Sbjct: 185 VSKVHSPGEVKKALEKGFYYDR--KLIFEEFVEGREIECSVLGNDQVEASLPGEI-LPGK 241 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY + V+PA + + + + LA A +AI G +R DF + V Sbjct: 242 EFYDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFLK--NNGV 299 Query: 258 FWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG T S++P++ G ++ +L+ ++E Sbjct: 300 LLVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIE 337 >gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 358 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 165/344 (47%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S+E EVS+ S AL+ + + + R +L Sbjct: 10 IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69 Query: 47 -----------------AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 AH P D+ F VLHG GEDG VQ E+ +P G Sbjct: 70 TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ D + ++ EI Sbjct: 190 GVAKVHASQEFAPALTE--AFRHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247 Query: 195 PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + +PA++P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFF--- 304 Query: 253 LSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L+ + +L EIN PG T +S++ + A +G ++ E++ +V+ Sbjct: 305 LTDDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVD 348 >gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] Length = 374 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q + E++ +PYT G+ ASAL MDK +KQV+ G+PV Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166 Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++ + + P P +KP + GSSLG+ ++ + ++ + H Sbjct: 167 VITDYAWRHRESAVPAEVLDLGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224 Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF------------YSYELKYSSLN 210 ++++E V G E+ C V L+ + A P++ F Y +E KY + + Sbjct: 225 PKVIVEAGVVGAREVECAV-----LEGRDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQD 279 Query: 211 STHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + +PA+IP + K + A A + + G++R DF + + ++ EIN PGMT Sbjct: 280 AVSLSIPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMT 339 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P S+FP M + G +++L+ ++E A Sbjct: 340 PFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|218681670|ref|ZP_03529471.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 894] Length = 320 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 14/253 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ E+ +P GIL SA ++DK +K+++ + G+PV ++ Sbjct: 60 DILFPVLHGPHGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 119 Query: 112 LVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ S ++ P IKP + GSS+G+ + Q L Q ++ H LL Sbjct: 120 TIHAGAAPSLSVLEGELGLPLFIKPARQGSSVGVAKVHASQEFAAALEQ--AFRHDRTLL 177 Query: 168 IEQYVDGIELTCGVM--GDASLDVT---EIAVPKS-DFYSYELKYSSLNSTHV-LPAKIP 220 E++V G E+ V+ D L V+ EI +S FY+Y KY N + +PA +P Sbjct: 178 AEEFVAGREIEFSVLEDTDGKLFVSRPGEIVPAESHGFYNYNAKYIDENGAALKVPADLP 237 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 +I ++ +A A +A+GC G++R DF R V E+N PG T +S++ + A Sbjct: 238 SEIEAAMRDMAAKAFRAVGCDGMARVDFFLTSDMRFVIN-ELNTIPGFTDISMYSKAMAA 296 Query: 281 AGYSFRELLLWMV 293 +G S+ E++ +V Sbjct: 297 SGVSYAEIIDRLV 309 >gi|58696727|ref|ZP_00372272.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila simulans] gi|58537095|gb|EAL60215.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila simulans] Length = 175 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVI 144 ++ I PYV+KP+ GSS+G+ +I Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYII 151 >gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 375 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 23/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q + E++ +PYT G+ AS+ MDK +K ++ G+PV Sbjct: 108 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYH 167 Query: 112 LVNRFTMDSQH----LISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +++ F D +H + +P P +KP + GSSLG+ + Q ++ + Sbjct: 168 VISDF--DWRHRADEVPTPILSWGLPVFVKPARAGSSLGVTRVDSWQDFEAAVVAAR--R 223 Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213 H ++++E V G E+ C V+ + P Y ++ KY + + Sbjct: 224 HDPKVIVEAAVQGAREIECAVLEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQ 283 Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + +PA+IP + ++Q A A Q +G G+SR DF + P + ++ E+N PGMTP S Sbjct: 284 LQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYS 343 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M G S+ +L+ ++E Sbjct: 344 LYPGMWENVGLSYTDLVTELIE 365 >gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] Length = 349 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 151/300 (50%), Gaps = 22/300 (7%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 I+S + S + K A L DA K +++D + D+ F VLHG FGEDG Sbjct: 53 IASMEDGSWINSKINAYILPDAIKKCIIVEIDGE----YKEVHVDVVFPVLHGLFGEDGT 108 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------PVCPSILVNRFTMDSQ 121 +Q +LEL IPY G+LASA+ MDK+ +K VV G+ PV + F + Sbjct: 109 IQGLLELSGIPYVGCGVLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVK 168 Query: 122 HL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS G+ + + +L+ + NH ++L+E+ + G E+ Sbjct: 169 RIEDRFDYPVFVKPSNAGSSKGVSKASNREELEKGILE--ALNHDRKVLVEETIVGHEVE 226 Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV+G + V EI + FY Y+ KY L+S +L +++P + +++ A Sbjct: 227 CGVLGRPGEVMASGVGEIK-SAATFYDYDAKY-KLDSLTLLDSQLPNGVREKLPECAKKI 284 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G+SR DF F ++ + EIN PG T +S++P + AG +EL+ ++E Sbjct: 285 FTALDGFGLSRVDF-FAKEDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIE 343 >gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] Length = 315 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|8671343|emb|CAB95026.1| D-alanine-D-alanine ligase [Prochlorococcus marinus] Length = 247 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 19/249 (7%) Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQ 121 GEDG +Q +L PY SG+L SAL MDK+ K S+ G+P ++ + D + Sbjct: 3 GEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKK 62 Query: 122 HL----------ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 L + P IKP GSS+GI KK+ LDL + ++++E Sbjct: 63 RLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDL----AAQLDSRIVVE 118 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + + EL C V+G + + + + SD+Y Y+ KYS ++ ++PA IP I KEV Sbjct: 119 KNIKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEV 178 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q L+ LA +AI GI+R DF +D ++ EIN PG T S++P + +G + Sbjct: 179 QSLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQ 238 Query: 288 LLLWMVEDA 296 L+ ++E A Sbjct: 239 LVARLIESA 247 >gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99] Length = 356 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 137/255 (53%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ + G+P P Sbjct: 89 DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFAHRGLPQLPYV 148 Query: 110 SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L + + +++I + P +KP GSS+GI + + ++ + ++ ++ Sbjct: 149 SFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSVGISKCEDEAALIKGIEEAFQFDR 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L+IEQ VD E+ V+G+ + T E+ V FY Y+ KY +PA + Sbjct: 209 --KLVIEQGVDAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKVKLAIPADL 265 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 D+ ++ +A A +A C G+ R+DF F +++ E N PG T S++P++ Sbjct: 266 DQDVQMTLRNMAVEAFKATDCSGLLRADF-FVTADNQIYINETNAMPGFTAYSMYPKLWE 324 Query: 280 YAGYSFRELLLWMVE 294 G S+ EL+ +++ Sbjct: 325 NMGVSYSELITKLID 339 >gi|92116839|ref|YP_576568.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14] gi|91799733|gb|ABE62108.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14] Length = 340 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/325 (29%), Positives = 148/325 (45%), Gaps = 48/325 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----RSVGLVLAHLKP----- 51 + +L GG + ER VS++S +A AL +A I D RS ++L H +P Sbjct: 3 ITILFGGSNKERLVSVASAQALHRALPEADLWFWDIRDDVHNVRSE-VLLDHARPFEDEF 61 Query: 52 -----DLAFNV---------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F LHG E+G +QA+ EL IP+T SG AS L+ Sbjct: 62 VPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLAF 121 Query: 92 DKMRSKQVVSSCGVPV---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 DK+ +K+ + GV P ++R + LI+ KP + GSS G+I + Q Sbjct: 122 DKVAAKRFAALAGVTTPAGVPLEEIDRAFAEHGRLIA-----KPARDGSSYGLIFVNAKQ 176 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYEL 204 D + ++ +IE +V GIE TCGV+ + V + VP + Y Sbjct: 177 ----DFVAVRHAAKTEEYVIEPFVSGIEATCGVLERSDGTVVALPPVEIVPAEGRFDYAS 232 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + + + P + I + A AH+A+ CRG SR+DF+ ++ +LE N Sbjct: 233 KYLAQTTQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIV--TGKEPVYLETNT 290 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289 PG+T S++P+ G F + L Sbjct: 291 LPGLTAASLYPKALKAQGIGFADFL 315 >gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] Length = 366 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 26/277 (9%) Query: 37 DVDRSVGLVL--AHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 D +S G+++ + LK + A F VLHG GEDG VQ + E++ +PY +G+LASA MD Sbjct: 78 DNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPYVGAGVLASACGMD 137 Query: 93 KMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSLGII 142 K+ SKQ+ G+P P + V + F L P Y IKP GSS+GI Sbjct: 138 KIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMY-IKPANLGSSVGI- 195 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS----- 197 K + L + + ++++EQ ++ E+ V+G+ D I+VP Sbjct: 196 -SKAENRDELIAAIELALRYDRRVVVEQGIEAREIEVAVLGN---DDIHISVPGELVKSV 251 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY YE KY + + +PA I D+ ++ A A QA+ G+SR DF + +V Sbjct: 252 DFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDFFLTS-NDEV 310 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F E+N PG T S++P + G ++ +L+ +++ Sbjct: 311 FINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQ 347 >gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 327 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 42/327 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-----------------KVSQIDVDRS-V 42 +AVLMGG S E EVSL S L+ + + + + VD++ Sbjct: 4 IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+L K D AFN +HG GEDG +QA L+ IP T + ASAL+ +K V+ Sbjct: 64 SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + G+P + +N+ +H + P +K + GSS G+ ++ I Sbjct: 124 NPYGIPRAKAYYLNQ----GEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDI-- 177 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSS 208 D ++ ++++IE+++ G E++ GV+ L +TEI V ++DF+ Y+ KY Sbjct: 178 DDAIEKAFEVDNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEI-VSENDFFDYQAKYQG 236 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 S + PA++ ++V+ LA + + +G SRS+++ + + + LE+N PG+ Sbjct: 237 -RSKEITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGL 293 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 + SI P+ A AG + L +E+ Sbjct: 294 SNASILPQQAKAAGITLANLFDNAIEE 320 >gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 365 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + + P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D F L V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARID-TFVTLDGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2] gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1] Length = 365 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAVSRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] Length = 357 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 48/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPD--- 52 + +L GG S+E E+S+ + K+ + L+ +K+ I VD+ +G +++ + Sbjct: 4 LYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKEL 63 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F +HG F EDG +Q +++++ Y + +L+S Sbjct: 64 VVEGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSS 138 A+ MDK + V + G+ LV ++ + I IKP GSS Sbjct: 124 AVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSS 183 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +G+ + K + I L+++ + + +++L+E+ V G EL VMG+ L + + V Sbjct: 184 VGVTKVTKKEEIEPALIEA--FKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVT 241 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + +F+ YE KY + H++P + + KE+Q +A A+ C+G +R D R Sbjct: 242 R-EFFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDR 300 Query: 256 KVFWLEINVQPGMTPVSIFPEM 277 K+ EIN PGMT VS+ P M Sbjct: 301 KMLVNEINTIPGMTAVSMAPAM 322 >gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] Length = 365 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + + P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D F L V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARID-TFVTLDGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 333 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 38/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41 +A++ GG S E +VS+ S + S + + + +DV DR+ Sbjct: 8 IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67 Query: 42 --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 +G + D A+ +HG GE+G++Q +L+ +PY+ SG+L +++ DK Sbjct: 68 SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIK-KDQSIPLDL 154 + + GV V SIL+ R + + P +KP GSS G+ +K DQ P Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAP--- 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210 +++ D+++IE +++G E++ G V TE+ V K++F+ Y+ KY+ Sbjct: 185 ALRTAFMESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEV-VTKNEFFDYDAKYNG-Q 242 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPG 267 + PA++ + K V + + C GI R D++ D + K+ LEIN PG Sbjct: 243 VKEITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPG 302 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MT S P+ AG +++L +VE+ Sbjct: 303 MTETSFIPQQVRAAGLDIKDVLSDIVEN 330 >gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] Length = 365 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + + P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] Length = 315 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPAGISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 348 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 105/338 (31%), Positives = 166/338 (49%), Gaps = 51/338 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32 +A+L GG S E +S+ S + A L E+ + Sbjct: 6 VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65 Query: 33 VSQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + + DRSV GL++ ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 +SAL MDK + VV + G+ P+ I+ +D+ L P V+KP + GSS G+ Sbjct: 126 SSALCMDKSLAYIVVRNAGI-ATPNFWIVTADEDIDADRL-PYPVVVKPARSGSSFGVSK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSD 198 + + + + L ++++ + ++LIE+ V G E+ C ++G+ LD V +I + Sbjct: 184 VSRKEEL-LSAVETAR-QYDSKVLIEEAVVGSEVGCAILGN-DLDVIVGEVDQIRLSHGF 240 Query: 199 FYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 F ++ + S NST ++PA I + VQ+ A ++ +GCRG+SR D +F Sbjct: 241 FRIHQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVD-MFLKEDG 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 KV E+N PGMT S +P M A AG F E++ MV Sbjct: 300 KVVLNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMV 337 >gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus] Length = 343 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 47/332 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S + A+ +++ ++ I + +S G+ KP Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKS-GVWKMCEKPCAEWENSNC 64 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+AF+ +H GEDG +Q + EL IPY I Sbjct: 65 YSAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDI 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + + + G+ + ++N+ + + P +KP + GSS G V Sbjct: 125 QSSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYG--VK 182 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200 K + + LD S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 183 KVNVADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFR 242 Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E + S N+ +PA + + +Q A ++A+GCRG+SR D R V Sbjct: 243 IHQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFLQDNGRIV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M A AG + EL+ Sbjct: 303 L-NEVNTLPGFTSYSRYPRMMAAAGITLPELI 333 >gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 348 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 12/250 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DLA VLHG GEDG +Q +LEL IPY + +SAL MDK + V G+ Sbjct: 92 DLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQSSALCMDKSLAYTVARGAGIATPNFW 151 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V L++ P +KP + GSS G+ + + + L ++ + ++LIE+ Sbjct: 152 TVTANEKVDADLLTYPVFVKPARSGSSFGVSKVSRKEE--LSGAVDTARQYDSKVLIEEA 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS----SLNSTHVLPAKIPLDI 223 V G E+ C ++G+ LD+T V + F+ + + S NST ++PA I + Sbjct: 210 VVGSEVGCALLGN-DLDLTAGEVDRISLSHGFFRIHQESAPESGSENSTAIVPADISAEA 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 VQ A ++A+GCRG+SR D +F KV E+N PGMT S +P M A AG Sbjct: 269 RSLVQETAKAVYRALGCRGLSRVD-MFLQEDGKVVLNEVNTLPGMTSYSRYPRMMAAAGL 327 Query: 284 SFRELLLWMV 293 E++ +V Sbjct: 328 PLAEVIDRLV 337 >gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4] gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4] Length = 365 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 64/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + S L+ F+V + V S G VL P Sbjct: 8 VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F VLHG FGEDG +Q +LEL Sbjct: 68 LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIK 131 ++PY G+ ASA +MDK +K+++++ G+PV + R + + P +K Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187 Query: 132 PLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183 P + GSS+GI + D ++L + + ++L+E V G E+ CGV+ Sbjct: 188 PSRAGSSVGISRVADWADLDAAIELARRTD----PKVLVEAAVRGREVECGVLEFPDGRV 243 Query: 184 DASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +ASL ++ +A + +Y +E KY ++ +PAK+ + ++ +A A +A+ C+ Sbjct: 244 EASLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQ 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF V E+N PG T S +P+M G + LL +++ A Sbjct: 304 GLARVDFFVTEEGDLVI-NEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTA 357 >gi|218672834|ref|ZP_03522503.1| D-alanine/D-alanine ligase [Rhizobium etli GR56] Length = 289 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 138/254 (54%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ + ++ +P GIL SA ++DK +K+++ + G+PV ++ Sbjct: 29 DMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARAV 88 Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ T S + + P IKP++ GSS+G+ + Q L + ++ H LL Sbjct: 89 TIHEGTTPSLAALEGELGLPLFIKPVRQGSSVGVAKVHASQEFAGALAE--AFRHDRTLL 146 Query: 168 IEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY-SSLNSTHVLPAKIP 220 E+++ G E+ V+ DA+ + EI +S FYSY+ KY + +PA++P Sbjct: 147 AEEFIAGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKYIDETGAALKVPAELP 206 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++ A A +A+GC G++R DF R V E+N PG T +S++ + A Sbjct: 207 PEVEAAMRDAAAEAFRAVGCDGMARVDFFLTSDMRFVIN-ELNTIPGFTDISMYSKAMAA 265 Query: 281 AGYSFRELLLWMVE 294 +G S+ E++ +VE Sbjct: 266 SGVSYAEVIDRLVE 279 >gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 327 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 19 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 79 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 137 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 138 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 195 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 196 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 254 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 255 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 313 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 314 VCSRLVDDVA 323 >gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27] gi|39930876|sp|Q83I36|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27] Length = 347 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 26/262 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F +LHG FGEDG +Q +L+LL+IPY SG+ ASA +MDK +K + S G+PV P Sbjct: 93 DLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWY 152 Query: 112 LV-------NR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 L+ NR F + P +KP+ GSS G + + +P+ + + H Sbjct: 153 LIKGHAWHKNRDSFLKQISDRFTFPLFVKPVDAGSSFGCTFVDFFEQLPVAI--EHALQH 210 Query: 163 GDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPK---SDFYSYELKYSSLNSTH-VLPA 217 G ++E +D E+ C ++ + L +E+ K S FY Y KY LN V+PA Sbjct: 211 GKSAIVEPALDAPEVFCSLIENNGVLQCSELVFVKHSGSKFYDYSAKY--LNPVEFVIPA 268 Query: 218 KIP-LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 + D Y E+ F +GCR +R DF + EIN PG+T SIFP Sbjct: 269 QFDNTDGYAEIASKVFF---ELGCRHYARIDFFV--TESGLVLNEINTSPGLTQKSIFP- 322 Query: 277 MAAYAGYSFRELLLWMVEDASC 298 +++ + +++ ++ A C Sbjct: 323 -SSFKSMQYSQVIETILASAYC 343 >gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] Length = 356 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 21/267 (7%) Query: 47 AHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV----S 101 +HL K D+ F VLHG GEDG +Q +LE+ IPY G+L+SA+SMDK+ +K V + Sbjct: 90 SHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVGCGVLSSAISMDKVYTKMAVEKPLA 149 Query: 102 SCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 GV I R ++Q I S P +KP GSS G+ K +++ Sbjct: 150 KIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVFVKPSNAGSSCGVSKAKDREALKKA 209 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSL 209 + + S + ++L+E+ + G EL C V V +V + ++FY Y+ KY++ Sbjct: 210 VENALSVDR--RVLVEESITGRELECAVFSGKEGQVESSSVGEILAAAEFYDYDAKYNNP 267 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +S L I +I +++++ A A+ +SR DF +V + EIN PG T Sbjct: 268 DSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSRVDFFLS--GEEVIFNEINTMPGFT 325 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S++P + GYS EL+ ++E A Sbjct: 326 SISMYPMLFKKKGYSIEELVEKLLESA 352 >gi|58201633|gb|AAW66893.1| vancomycin resistance protein C1 [Enterococcus gallinarum] Length = 235 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 12/219 (5%) Query: 41 SVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 S G +L + PD+ F VLHG +GEDG +Q +LEL+ +PY + ASAL M+K Q Sbjct: 8 SQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQ 67 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + + G+ P++L++R+ D + P IKP + GSS GI + ++ Sbjct: 68 LADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHS 127 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLN 210 L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D F+ +E KY ++ Sbjct: 128 AL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLIS 185 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +T +PA +PL + +++ A L ++ +G G++R DF Sbjct: 186 ATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFF 224 >gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist] gi|39930872|sp|Q83G28|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist] Length = 347 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 26/262 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F +LHG FGEDG +Q +L+LL+IPY SG+ ASA +MDK +K + S G+PV P Sbjct: 93 DLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWY 152 Query: 112 LV-------NR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 L+ NR F + P +KP+ GSS G + + +P+ + + H Sbjct: 153 LIKGHAWHKNRDSFLKQISDRFTFPLFVKPVDAGSSFGCTFVDFFEQLPVAI--EHALQH 210 Query: 163 GDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPK---SDFYSYELKYSSLNSTH-VLPA 217 G ++E +D E+ C ++ + L +E+ K S FY Y KY LN V+PA Sbjct: 211 GKSAIVEPALDAPEVFCSLIENNGVLQCSELVFVKHSGSKFYDYSAKY--LNPVEFVIPA 268 Query: 218 KIP-LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 + D Y E+ F +GCR +R DF + EIN PG+T SIFP Sbjct: 269 QFDNTDGYAEIASKVFF---ELGCRHYARIDFFV--TESGLVLNEINTSPGLTQKSIFP- 322 Query: 277 MAAYAGYSFRELLLWMVEDASC 298 +++ + +++ ++ A C Sbjct: 323 -SSFKSMQYSQVIETILASAYC 343 >gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] Length = 330 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 47/330 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-----KVSQ-----------IDVDR---S 41 +A++ GG S EREVSL S ++ F ++S+ + +DR S Sbjct: 8 IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + + D AF +HG GE+GL+Q ++LEIPY G+L +L+ DK +S Sbjct: 68 FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127 Query: 102 SCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGII-VIKKDQSIPLD 153 + G+ + S R D + + P +KP GGSS+ V DQ L Sbjct: 128 AFGIRIAAS---ERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQ---LA 181 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++L+E+ ++G E+T C ++ + L +TE+ + K +F+ ++ KY Sbjct: 182 VAIQKAFEEAPEVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAKYHG- 240 Query: 210 NSTHVLPAKIPLDIYKEVQ----RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 NS + PA+I + +E+Q R+A L H +GI R D++ + + LE+N Sbjct: 241 NSDEITPARISEKLTQELQELTSRIALLLH----AQGIIRVDYIIEADGKPTL-LEVNTT 295 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG + ++ D Sbjct: 296 PGMTEASFIPQEIRAAGLELSHIFTAIIND 325 >gi|146342495|ref|YP_001207543.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium sp. ORS278] gi|146195301|emb|CAL79326.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium sp. ORS278] Length = 329 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 49/324 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP-DLAFNV- 57 +L GG + ER VS++S KA +AL +A + D V ++ G L AH KP + F Sbjct: 5 ILFGGSNKERLVSVASAKALHAALPEADLWFWEADDTVQQASGPALVAHAKPFEEPFTAD 64 Query: 58 ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 LHG E+G +Q + E+ +P+T S AS L+ DK Sbjct: 65 GVRIGTLAEALDRARAEDRILVLGLHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSI 150 + +K+ GV + +D+ Y + KP+K GSS G+I + Q Sbjct: 125 VAAKRFAVLGGVTAAEGV-----ALDNAETALARYGKLIAKPVKDGSSFGLIFVNAKQ-- 177 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205 DL+ + ++ LIE +V G E TCGV+ A +L EI +P ++Y K Sbjct: 178 --DLVAVKAAAATEEYLIEPFVTGKEATCGVLEQADGSLIALPPIEI-LPADGAFNYFAK 234 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y + + + P + ++ +QR A AH+A+ C G SR+DF+ + +LE N Sbjct: 235 YLAAATKEICPGRFNPEVTAALQREAIKAHRALSCGGYSRTDFIVS--ADGPVYLETNTL 292 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PG+T S++P+ A G F + L Sbjct: 293 PGLTAASLYPKALAAQGIPFADFL 316 >gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] Length = 376 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 139/255 (54%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106 D+ F ++HGN GEDG +Q +L LL PY + IL SA+S DK +K++V GVP Sbjct: 97 DVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTAILGSAMSFDKDITKKIVKLAGVPTTRYE 156 Query: 107 VCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 V + +++ DS + IKP GSS+GI ++ + + ++ + + Sbjct: 157 VITPLTAEQYSYDSLSDELGQTLFIKPANQGSSVGIHKVENAEEYSEGI--RDAFRYDSK 214 Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219 +LIE+ ++G EL ++G+ + + I VPK D FY+Y+ K+ + +P I Sbjct: 215 VLIEEAIEGPEELEISILGNDHPIASKIGAIRVPKDDAFYTYDNKFVDASQVKFDVPVDI 274 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ +++ + ++A+G +G++R D+L K + E+N PG T +S++P++ A Sbjct: 275 SEELAQQITEMGLTTYRALGLKGMARIDYLVSK-DDKPYMSEVNTLPGFTNISLYPQLFA 333 Query: 280 YAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 334 ASGISYSELIDRLIQ 348 >gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 348 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/334 (28%), Positives = 163/334 (48%), Gaps = 51/334 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+ER+VS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+++MD Sbjct: 68 NDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 K+ +K+V++S G+P P + V + +L P + KP GSS+GI Sbjct: 128 KITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFT-KPSNMGSSVGI---- 182 Query: 146 KDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 +S D L+S+ ++ + ++LIEQ V+ E+ G++ + + + E+ V F Sbjct: 183 -SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEV-VKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY T +PAK+ D+ +++ A A AIG G++R DF + ++F Sbjct: 241 YDYEAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTD-KGEIFL 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S++P + G S+ +L+ +V Sbjct: 300 NELNTMPGFTQWSMYPLLWENMGISYTDLIEKLV 333 >gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2] gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1] Length = 315 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 248 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 135/248 (54%), Gaps = 13/248 (5%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 4 LHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME 63 Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D + P V+KP GGSS+G+ IV KD+ I + L W+ +++IE+Y+ Sbjct: 64 DLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIK 120 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+TC + L + I ++F+ Y KY ++ + ++P ++ + V + + Sbjct: 121 GDEITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLA 178 Query: 234 AHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 ++A+ C +R D + D + + +EIN PGMT S+ P+ AA AG + +LL + Sbjct: 179 CYKALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMI 235 Query: 293 VEDASCLR 300 +E + +R Sbjct: 236 IETSLRVR 243 >gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 361 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDR- 40 + +L GG S+E +VSL + A AL F++ I DV+ Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 41 --------------SVGLVLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 S ++ A D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + + Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADF-FL 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V+ E+N PG TP S+FP + + G + +L+ ++ Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELI 344 >gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3] Length = 315 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] Length = 315 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L+ IPY S +S DK + + V++ G+ V P + + F + Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP +GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D R VF LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVEDAS 297 + +V+D + Sbjct: 302 VCSRLVDDVA 311 >gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 375 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 23/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG +GEDG +Q + E++ +PYT G+ AS+ MDK +K ++ G+PV Sbjct: 108 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYH 167 Query: 112 LVNRFTMDSQH----LISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +++ F D +H + +P P +KP + GSSLG+ + Q ++ + Sbjct: 168 VISDF--DWRHRADEVPTPILSWGLPVFVKPARAGSSLGVTRVDSWQDFESAVVAAR--R 223 Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213 H ++++E V G E+ C V+ + P Y ++ KY + + Sbjct: 224 HDPKVIVEAAVQGAREIECAVLEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQ 283 Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + +PA+IP + ++Q A A Q +G G+SR DF + P + ++ E+N PGMTP S Sbjct: 284 LQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYS 343 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 ++P M G S+ +L+ ++E Sbjct: 344 LYPGMWENVGLSYTDLVTELIE 365 >gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37] Length = 345 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE---------------------------DAGFKV 33 + ++ GG S E VS+ S + A +L+ + G + Sbjct: 6 VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65 Query: 34 SQIDVDRSV-GLVL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + + DRSV GL++ ++ DL VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + V S G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSY 202 ++ +P + + ++ ++LIE+ V G E+ C ++G D L +V +A+ F + Sbjct: 186 EEELPSAVETARQFD--SKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S NST + PA I + VQ A ++A+GCRG+SR D +F + Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVD-MFLKEDGTIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAG 282 E+N PG+T S +P M A AG Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAG 325 >gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC 8503] gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503] Length = 330 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/325 (25%), Positives = 156/325 (48%), Gaps = 37/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38 +A++ GG SSE +SL S S ++ + + + D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V H D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K Sbjct: 65 SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122 Query: 99 VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + GV + SI L T+ + +++ P +KP GGSS G+ +K+ +I + Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210 + ++ G ++++E+++DG E+TCG +V TE+ V ++F+ ++ KY+ Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I ++ + +Q + +G +G+ R D++ P + LEIN PGMT Sbjct: 239 VDEITPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG ++++ ++ED Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322 >gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] Length = 373 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 20/262 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + L+++P+ SG+L SAL MDK K ++ G+P P Sbjct: 101 DVWFPVLHGPNGEDGTIQGLFALMQVPFVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYA 160 Query: 112 LVNRFTM--DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V + D + L+ P +KP GSS+GI S+ L +++ + Sbjct: 161 AVQAADLRHDPEGLLQRLERDLGYPCFVKPANMGSSVGISKASDRSSLLQGLELAAALDP 220 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--------VTEIAVPKSDFYSYELKYSSLNSTHV 214 +L++EQ V EL C V+G + V EI +D+Y YE KY++ S+ V Sbjct: 221 --RLVVEQGVTARELECAVLGQGAAAGGGLKASVVGEIRF-SADWYDYETKYTAGLSSTV 277 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA++P + + ++ +A A A+ G++R DF +D +++++ EIN PG T S++ Sbjct: 278 IPAELPEAVSERLRAMALQACAAVATEGLARVDFFYDEAAQRLWLNEINTLPGFTSQSMY 337 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P + A +G +L+ +VE A Sbjct: 338 PMLWAASGVPLVDLVHQLVESA 359 >gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium] gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA / D-alanine--D-alanine ligase [Enterococcus faecium] gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium] Length = 343 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 64 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYG 239 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q A ++A+GCRG++R D Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG + EL+ Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333 >gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S+E EVSL S K A++ F V + +D+ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 41 -----------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + G A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R +S + P +K Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY + V+PA + I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG T +S++P++ +G S+ +L+ ++E Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLE 348 >gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 348 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 58/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + ++ GG S+EREVS+ S ++ A+ F V Sbjct: 6 LILIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + +DV + V + + + F VLHG GEDG +Q LE+L +PY IL+S+++ Sbjct: 66 MTNATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLG 140 MDK+ +K+++ S G+P P + V ++ ++L ++ P KP GSS+G Sbjct: 126 MDKITTKRILESAGIPQVPYVAV----IEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVG 181 Query: 141 IIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 I + + + LDL ++ + ++LIEQ V+ E+ G++G+ + T E+ V Sbjct: 182 ISKSENQEELRAALDL----AFKYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEV-VK 236 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY YE KY T +P KI + ++ A A +A+G +G++R DF + Sbjct: 237 DVAFYDYEAKYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTE-EG 295 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300 +F E+N PG T S++P + G + +L L+ + E+A R Sbjct: 296 DIFLNELNTMPGFTQWSMYPLLWENMGLPYSDLIEKLVNLAEEAFAQR 343 >gi|85714979|ref|ZP_01045964.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A] gi|85698176|gb|EAQ36048.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A] Length = 329 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 149/326 (45%), Gaps = 50/326 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDVDRSVGLVLAHLKP---- 51 + +L GG + ER VS++S +A AL +A + IDV + H +P Sbjct: 3 ITILFGGSNKERLVSVASAQALHHALPEADLWFWNHRDEVIDVRPEA--LRNHARPFEDE 60 Query: 52 ----------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + A + LHG E+G +QA+ EL IP+T SG AS L+ Sbjct: 61 FVPAGEGAPLERALDKAKAEGRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLA 120 Query: 91 MDKMRSKQVVSSCGVPV---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ +K+ V+S GVP P ++R + L++ KP GSS G+I + Sbjct: 121 FDKVAAKRFVASAGVPTPAHIPLQSIDRALAEHGRLVA-----KPACDGSSYGLIFV--- 172 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYE 203 P D++ + +IE +V G+E TCGV+ + V + VP + Y Sbjct: 173 -DAPQDIVTVREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYA 231 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY + + + P + +I +++ + AH A+ CRG SR+DF+ + +LE N Sbjct: 232 AKYLAKTTQEICPGRFSPEIAEQIMDYSLRAHLALSCRGYSRTDFIV--TGKGPIYLETN 289 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289 PG+T S++P+ F + L Sbjct: 290 TLPGLTAASLYPKALHAQNIGFADFL 315 >gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella denticola F0289] gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola F0289] Length = 332 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 155/327 (47%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VS+ SG+ S + + + +DV D V L L P Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +LL +PY+ SG+L A++ DK + Sbjct: 68 SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 GV V SIL+ R + + + P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211 ++ D++++E ++DG+E++ GV + V TE+ V ++F+ Y KY+ Sbjct: 188 ---AFMESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEV-VTSNEFFDYNAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268 + PA++ + + V + + GI R D++ D V LEIN PGM Sbjct: 243 QEITPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +E+L +VE+ Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] Length = 365 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ +A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L++PY +G++ SA +MDK+ +K ++ + G+P P Sbjct: 97 IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P IKP GSS+GI + + + L ++ + Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFIKPANMGSSVGITRAENREELQNAL--QEAYRYD 214 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + L+EQ +D E+ V+G+ + T EI V + FY Y KY +PA IP Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEI-VKEEAFYDYNAKYIDNTIQMAIPADIP 273 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++ + A A+ +G G+SR DF F ++F E+N P T S++P + Sbjct: 274 EEVMQKARDYAKSAYTMLGGSGLSRIDF-FLTNKNELFLNELNTMPDFTEFSMYPLLWEN 332 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 333 MGLKYGDLIEELIQ 346 >gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3] gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4] Length = 365 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ +A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30] gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30] Length = 356 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIE 339 >gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] Length = 317 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 155/320 (48%), Gaps = 34/320 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE ++SL SG + L + +I + D SV + Sbjct: 1 MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q+ +L+ +P T +AL+ +K V+ G Sbjct: 61 NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120 Query: 105 VPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N ++ +I+ P +K K GSS GI + + + L+ ++ Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEK--LNAAIDIAF 178 Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++IE ++DG E++ GV+ G+ L +TEI V ++DF+ YE KY S + P Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEI-VSENDFFDYEAKYLG-KSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I + +V +A + + +G +RS+F+F + LE+N PG+T SI P+ Sbjct: 237 ARITKEQENKVTTVAKKIYNVLKMKGYTRSEFIFK--DGEPHLLEMNTIPGLTNESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVEDA 296 AA AG + L +E+A Sbjct: 295 QAAEAGITMEALFDSAIEEA 314 >gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 310 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 16/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58 +A+L GG S E + S S A AL + G + +D+ SV L PD AF Sbjct: 3 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDI--SVPDFWKRL-PDFEAAFIAG 59 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 60 HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 119 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +Q I P KP G S +++ D+ + +LL D+ + E ++ Sbjct: 120 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDL-RELLAEEGEYSSDEFIAEPFLT 178 Query: 174 GIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G T GV+ D ++ + AV +FY E K + PA IP + +Q L Sbjct: 179 GNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQEL 238 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A GCRG++R DF+ R V LE+N PG+T MA +G +R ++ Sbjct: 239 AVRVFTVCGCRGVARVDFMLSE-DRPVV-LEVNTVPGLTLQGNLAAMAKASGLGYRRVVE 296 Query: 291 WMVEDA 296 M++ A Sbjct: 297 IMLQSA 302 >gi|306520162|ref|ZP_07406509.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-32g58] Length = 313 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 14/206 (6%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159 V SIL+ ++F + + ++ P IKP++ GSS GI I K++ + +DL + Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + H ++++IE+ +DG E+ C V+G+ L V EI + K F+ Y KY+ +S +P Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRG 242 A+I LD K +Q A + ++ +GC G Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSG 311 >gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 360 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 345 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 16/213 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 96 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 K+ + + +++LA A AI CRG++R DF Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 306 >gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 312 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 16/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58 +A+L GG S E + S S A AL + G + +D+ SV L PD AF Sbjct: 5 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDI--SVPDFWKRL-PDFEAAFIAG 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 62 HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 121 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +Q I P KP G S +++ D+ + +LL D+ + E ++ Sbjct: 122 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDL-RELLAEEGEYSSDEFIAEPFLT 180 Query: 174 GIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G T GV+ D ++ + AV +FY E K + PA IP + +Q L Sbjct: 181 GNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQEL 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A GCRG++R DF+ R V LE+N PG+T MA +G +R ++ Sbjct: 241 AVRVFTVCGCRGVARVDFMLSE-DRPVV-LEVNTVPGLTLQGNLAAMAKASGLGYRRVVE 298 Query: 291 WMVEDA 296 M++ A Sbjct: 299 IMLQSA 304 >gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1] gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2] gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1] gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2] gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1] Length = 365 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ +A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDVTRRRVQEVAVKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 404 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 33/244 (13%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG F EDG++Q LELL +PY +++S+ MDK+ K V G+P+ + Sbjct: 109 DVAFPIVHGTFAEDGVLQGYLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYV 168 Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---S 159 ++ D L+ P ++KP GSS+GI ++ +D L+ + + Sbjct: 169 WFYSTKWNEDQDELVKKVEGKLQYPVIVKPANLGSSVGI-----SKAANVDELEEAVELA 223 Query: 160 WNHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSL------ 209 ++++IE+ V + E+ C V+GD A V E + + SYE KY+ Sbjct: 224 SQFANKIVIEKMVQNMTEINCSVLGDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGG 283 Query: 210 ------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 ++ ++PA I + KE+Q LA A Q +GC G+SR DFL D + VF EIN Sbjct: 284 ASKGMESTNRIIPADISEEKTKEIQELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEIN 343 Query: 264 VQPG 267 PG Sbjct: 344 TIPG 347 >gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus N315] gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus COL] gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122] gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH9] gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH1] gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. Newman] gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu3] gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 132] gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MR1] gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122] gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH1] gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TW20] gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981] gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JKD6159] gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS03] gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS01] gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11] gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46] gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 356 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 364 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 363 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 16/213 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ G+PV Sbjct: 114 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 173 Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R T+ Q + P +KP +GGSS+G+ + +P + ++ H +++ Sbjct: 174 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 231 Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217 +E + G EL CGV M D +L+ + EI V + FY + KY + +PA Sbjct: 232 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 291 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 K+ + + +++LA A AI CRG++R DF Sbjct: 292 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 324 >gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 331 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 157/326 (48%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VSL S + S + + V +DV D V L + P Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +L+ +PY+ SG+L AL+ +K + Sbjct: 68 SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR-FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV V S+L+ R + D + + + P +KP GSS G+ +K+ + L Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++++E ++DG+E++ G+ L TE+ V ++F+ Y+ KY+ Sbjct: 186 RVAFMESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEV-VTSNEFFDYDAKYNG-QVK 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ + +V ++ + GI R D++ S V LEIN PGMT Sbjct: 244 EITPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKEVLTEIVEN 329 >gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 346 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 22/251 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG GEDG +Q +LEL IPY + +SAL MDK + V + G I Sbjct: 92 DVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQSSALCMDKSLTYTVARAAG------I 145 Query: 112 LVNRF-TMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 RF T+ + + P P +KP + GSS G+ + +P L + ++ + Sbjct: 146 ATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSGRDELPGALDVARRYD--SK 203 Query: 166 LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAK 218 +L+E+ V G E+ C ++G+ + +V +IA+ F + E + S NS+ +PA Sbjct: 204 VLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIHQEDEPERGSDNSSVTVPAA 263 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I + VQ A A++A+GCRG+SR D +F V E+N PGMT S +P M Sbjct: 264 ISQEARALVQETAKAAYRALGCRGLSRVD-MFLTADGDVVLNEVNTLPGMTSYSRYPRMM 322 Query: 279 AYAGYSFRELL 289 A AG F E++ Sbjct: 323 AAAGLPFAEVI 333 >gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii] Length = 343 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 165/338 (48%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S E VS+ S A+ ++ ++ I + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 39 ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DRS GL++ ++P D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 +S MDK + VV + G+ V P IL ++++ + P +V KP + GSS G+ Sbjct: 126 SSVTCMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + K + + + ++ ++ ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 184 VCKAEELQAAIEEARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241 Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D LF Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARID-LFLREDGC 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG T S +P M AG++ E+L ++E Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG +GEDG +Q +LE+ +PY G+L SAL MDK + K + + +PV P + Sbjct: 115 DVIFPVMHGTYGEDGALQGLLEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFL 174 Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +R + + + P ++KP GSS+G+ Q++ + Q+ ++ Sbjct: 175 AYHRKQWKQAPETILLAVEQELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAGEYD- 233 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220 +++IE+++D EL+C V+G+ + I V + Y+ KY +PA IP Sbjct: 234 -TKIIIERWLDVRELSCAVLGNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIP 292 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + KEV ++ A + G++R DF D +++ E+N P T S++P++ + Sbjct: 293 GPLAKEVFHMSTQAFLVLDLSGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSA 352 Query: 281 AGYSFRELLLWMVE 294 + + +LL ++E Sbjct: 353 SNLPYPKLLDRLIE 366 >gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 361 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 11 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 71 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 191 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 247 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 248 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 307 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 344 >gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] Length = 356 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGVKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177] Length = 393 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376 >gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus] Length = 314 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 41 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 98 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 99 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 157 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 158 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 216 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q A ++A+GCRG++R D Sbjct: 217 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 276 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG + EL+ Sbjct: 277 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 310 >gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium] Length = 359 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 80 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 137 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 138 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 196 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 197 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 255 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q A ++A+GCRG++R D Sbjct: 256 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 315 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG + EL+ Sbjct: 316 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 349 >gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] Length = 332 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 156/330 (47%), Gaps = 43/330 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VS+ SG+ S + + + +DV D +V L L P Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +L++IPY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIP---L 152 G+ V SIL+ R + + + P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208 +QS D+++IE ++DG+E++ GV V TE+ V ++F+ Y KY+ Sbjct: 188 AFMQS------DEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYNG 240 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQ 265 + PA++ + K V + + GI R D++ D + V LEIN Sbjct: 241 -QVEEITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTT 299 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG + +L +VE+ Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius] gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius] Length = 343 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/331 (28%), Positives = 152/331 (45%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +A+L GG S E +VS+ S K A+ + ++ I + RS Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 43 -----------GLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 GL++ K D AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G V K Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYG--VKK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYS 201 + + LD S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 184 VNGADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+ +PA + + ++ A ++A+GCRG++R D R V Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFLQDNGRIVL 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M AG + EL+ Sbjct: 304 -NEVNTLPGFTSYSRYPRMMVAAGITLPELI 333 >gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium] Length = 343 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 151/333 (45%), Gaps = 49/333 (14%) Query: 1 MAVLMGGISSEREVSLSSG-----------------------------KACASALEDAGF 31 +A+L GG S E +VSL S K CA D + Sbjct: 6 VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 32 --------KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVGCD 123 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G V Sbjct: 124 IQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG--V 181 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY 202 K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 182 KKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIF 241 Query: 203 ------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 E + S N+ +PA + + +Q A ++A+GCRG++R D R Sbjct: 242 RIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNGRI 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 V E+N PG T S +P M A AG + EL+ Sbjct: 302 VL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333 >gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735] gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735] Length = 331 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53 +A++ GG SSE +VSL S + S + + V +DV + S G A K D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67 Query: 54 AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +F +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 GV V SIL+ R + I P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211 ++ ++++IE Y+DG+E++ G+ +V TE+ V K++F+ Y+ KY+ Sbjct: 188 ---AFMESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEV-VTKNEFFDYDAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268 + PA++ + +V + + GI R D++ + V LEIN PGM Sbjct: 243 QEITPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L +VE+ Sbjct: 303 TATSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium] gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium] gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium] gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium] gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis] gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis] gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein VanA; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanA ligase gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium] gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium] gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium] gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis] gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium] gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium] gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium] gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium] gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium] gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium] gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis] gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis] gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis] gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis] Length = 343 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 64 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q A ++A+GCRG++R D Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG + EL+ Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333 >gi|257784124|ref|YP_003179341.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469] gi|257472631|gb|ACV50750.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469] Length = 333 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 38/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ER SL SG + ALE G++V +D D + L KPD+AF LHG Sbjct: 5 VAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFVCLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRSKQVVSSCGVPVCPSILVN 114 GEDG V A+LE L+IPY S + + +K +R V P I++ Sbjct: 65 AGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQIVLT 124 Query: 115 -----------RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 M + L + P +KP+ GGS++G+ + + LL + + Sbjct: 125 ASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKALLGALGF 184 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + D ++I+Q+VDG+E++ V+ DA +L EI+V K Y + + H P Sbjct: 185 D--DSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKG-IYDTDARLDPERIEHFCP 241 Query: 217 AKI---------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + P+ + ++R A A GCR ++R DF++D V + + PG Sbjct: 242 VRSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWD--GHHVMVMGLKTFPG 299 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +T S+ P AGY+ ++L +VE A Sbjct: 300 LTETSLVPMAIEAAGYAVEDVLAQLVEGA 328 >gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] Length = 363 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 28/258 (10%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F VLHG GEDG VQ + E++ +PY +G+LASA MDK+ SKQ+ G+P P + V Sbjct: 100 FPVLHGPNGEDGTVQGLFEVIGMPYVGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVR 159 Query: 115 R----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHG 163 + F L P Y IKP GSS+GI + +D+ I L + + Sbjct: 160 KAEWLNDKESVFKHCEGTLFYPMY-IKPANLGSSVGISKAENRDELIEAIEL---ALRYD 215 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL--P 216 ++++EQ ++ E+ ++G+ D I+VP DFY YE KY LN+ VL P Sbjct: 216 RRVVVEQGIEAREIEVAILGN---DDIHISVPGELVKTVDFYDYESKY--LNNEVVLQIP 270 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A +P D+ ++ A A QA+ G+SR DF F + ++F E+N PG T S++P Sbjct: 271 ALVPEDVNTRLREYAVRAFQALDGSGLSRCDF-FLTSNDELFINEVNTMPGFTQFSMYPS 329 Query: 277 MAAYAGYSFRELLLWMVE 294 + G ++ +L+ +++ Sbjct: 330 LWKNTGLNYGDLVEELIQ 347 >gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS] gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus pyogenes M49 591] gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180] gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005] gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429] gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096] gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131] gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131] Length = 348 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333 >gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1] gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1] gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 348 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333 >gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)] gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName: Full=Vancomycin resistance-like protein gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 128/249 (51%), Gaps = 18/249 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG GEDG Q +LEL IPY + +SAL MDK + V S G+ P Sbjct: 92 DVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQSSALCMDKSLAYVVARSAGI-ATPDF 150 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLL 167 + T+D L P +V KP + GSS G+ + + P DL + S+ + ++L Sbjct: 151 WTVTGDETIDPGRLTYPVFV-KPARSGSSFGVSKVCR----PEDLATAVESARRYDTKVL 205 Query: 168 IEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIP 220 IE V G E+ C ++G D L +V IA+ F ++ + S NST V+PA IP Sbjct: 206 IEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIP 265 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + VQ A ++A+GCRG+SR D +F +V E+N PGMT S +P M A Sbjct: 266 TEKRSLVQETAKAVYRALGCRGLSRVD-MFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAA 324 Query: 281 AGYSFRELL 289 AG E++ Sbjct: 325 AGLPLSEVI 333 >gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394] gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394] Length = 348 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333 >gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750] gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 348 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333 >gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58] gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58] Length = 379 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 22/257 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109 D+ F +LHG +GEDG +Q + E L +PY G+LASA+ MDK K + G+ V Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVSFQAAGLEVGAWE 170 Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +I + D + ++ P +KP + GSS GI + + + + ++ ++ Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213 ++++E + G E+ C V+ ++P ++ FY +E KY +T Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGSAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288 Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P + + ++ LA A +A+ G+ R DF F P R V EIN PG TP+S Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347 Query: 273 IFPEMAAYAGYSFRELL 289 ++P M G S+ +L+ Sbjct: 348 MYPAMWERTGLSYDDLI 364 >gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] Length = 367 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 18/253 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ HG+ GEDG +Q +LE L +PYT G+ +S +MDK+ +K ++ +PV + Sbjct: 94 DVCLLTFHGSNGEDGSIQGMLEFLNVPYTGCGMYSSMYTMDKVITKLILKEKNIPVVDFL 153 Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 N+ F + ++ P ++KP + GSS+G V K + L+ ++++ D+ Sbjct: 154 YTNKKNYTNDFLNHCKEVLEYPMIVKPARLGSSIG--VKKVNDKCELEEAIETAFSFDDK 211 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLN---STHVLPAKIP 220 +++E+++D EL C VMG ++ V+EI K DF+ Y KY S H++PA I Sbjct: 212 VIVEKWIDSRELNCAVMGYKNIVVSEIEEIKKQKDFFDYNEKYVQKGKKFSNHIIPAPID 271 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++ +A A+ C G R DFL K++ E+N PG ++ Sbjct: 272 ENLKNTIKSIARDTFNALECHGNIRIDFLLSK-DNKIYVNEVNSIPGALSYYLW----QM 326 Query: 281 AGYSFRELLLWMV 293 +G++F +++ M+ Sbjct: 327 SGFTFSQVIDNMI 339 >gi|187235564|gb|ACD01995.1| putative D-alanine-D-alanine ligase [Clostridium septicum] Length = 211 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 8/215 (3%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVN 114 LHG FGEDG VQ++L+ L+IPY+ L+SAL MDK +K+++ S + + V Sbjct: 2 LHGKFGEDGTVQSVLQTLDIPYSGCEPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVE 61 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P IKP GGSS+ I K + + + + W++ +++IE+++ G Sbjct: 62 EIDYDKIEEMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKG 119 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TC V V I PK+DF+ Y KYS + V+ ++ ++KEV+++A Sbjct: 120 EEITCPVFKGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDT 177 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++A+ C SR D + R + LE+N PGMT Sbjct: 178 YKALKCSVYSRIDMIVTE-DRTPYILELNTFPGMT 211 >gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270] gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 348 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEVLV 333 >gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 281 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 138/258 (53%), Gaps = 15/258 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V +DVD ++ L ++PD+ + ++HG+ GEDG +Q++LEL+ +PY + A ++ D Sbjct: 3 VKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASD 62 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS----------QHLISPPYVIKPLKGGSSLGII 142 K + V+S+ G+ V S+ + + + P V+KP +GGS+LG+ Sbjct: 63 KAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVT 122 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFY 200 ++ +P ++ +++ ++ +EQY++G E+ V+ G + + + Y Sbjct: 123 IVASAAGLPRAMVDCFAYD--ERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAADGPY 180 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ +Y + + + +PA++ + V+ A AH +G R +SR+D + D R + L Sbjct: 181 DYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDAGR-AWIL 239 Query: 261 EINVQPGMTPVSIFPEMA 278 ++NV PGMT S+FP+ A Sbjct: 240 DVNVAPGMTETSLFPQAA 257 >gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2] gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2] Length = 362 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/339 (27%), Positives = 149/339 (43%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK------------------------VSQI 36 + ++ GG S E EVSL + A +A ++ V Q+ Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67 Query: 37 DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ + G A L D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGG 136 ASA MDK K++ G+P N ++ L+ P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAV 194 SS+GI K L+ + ++++E+YVD E+ V+G+ V V Sbjct: 188 SSVGI--SKASNREELEKAVDLALQFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG TP S++P + G S+ LL M+ Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMI 344 >gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232] gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str. Manfredo] gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232] gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 348 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + +L GG S+EREVS+ S ++ A+ F V ++ Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65 Query: 37 DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ L +KP + F VLHG GEDG +Q LE+L +PY + +++S++ Sbjct: 66 MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139 +MDK+ +K+V+ S G+P + +D Q L ++ P +KP GSS+ Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L + + ++LIEQ V E+ G++G+ + T E+ + Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY T +PA + I E++ A +A +A+G G+SR DF F + Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ E+N PG T S++P + G ++ +L+ +V Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333 >gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] Length = 332 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VS+ SG+ S + + + +DV D +V L L P Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +L+++PY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152 G+ V SIL+ R + I P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPALRV 187 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208 +QS D+++IE ++DG+E++ GV V TE+ V ++F+ Y KY+ Sbjct: 188 AFMQS------DEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYNG 240 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQ 265 + PA++ + K V + + GI R D++ D + V LEIN Sbjct: 241 -QVEEITPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTT 299 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG + +L +VE+ Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 370 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVAPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 164/338 (48%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S E VS+ S A+ ++ ++ I + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 39 ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DRS GL++ ++P D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 +S MDK + VV + G+ V P IL ++++ + P +V KP + GSS G+ Sbjct: 126 SSVTCMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + K + + + + ++ ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 184 VCKAEELQAAIEDARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241 Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D LF Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARID-LFLREDGC 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG T S +P M AG++ E+L ++E Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ST398] Length = 356 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 59 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 164 KLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + D+ ++ +A A Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064] Length = 318 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 48 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 107 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 108 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 165 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 166 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 222 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 223 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 281 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 282 LLWQETGLPYGALIERLVD 300 >gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] Length = 348 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 43/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67 Query: 49 ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + ++ P +KP GSS+GI K Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--SKA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+A + T E+ V FY Y+ Sbjct: 186 EDLAGLHKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 245 AKYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G ++ +L+ +V Sbjct: 304 TMPGFTQWSMYPLLWDNMGLAYPDLIEELV 333 >gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] Length = 346 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 20/250 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG GEDG Q +LEL IPY + +SAL MDK + V S G+ P Sbjct: 92 DVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQSSALCMDKSLAYVVARSAGI-ATPDF 150 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLL 167 + T+D L P +V KP + GSS G+ + + P DL + S+ + ++L Sbjct: 151 WTVTGDETIDPGRLTYPVFV-KPARSGSSFGVSKVCR----PEDLATAVESARRYDTKVL 205 Query: 168 IEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFYSYELKY---SSLNSTHVLPAKI 219 IE V G E+ C ++G+ LD V IA+ F ++ + S NST V+PA I Sbjct: 206 IEAAVVGSEVGCAILGN-DLDLIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADI 264 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P + VQ A ++A+GCRG+SR D +F +V E+N PGMT S +P M A Sbjct: 265 PTEKRSLVQETAKAVYRALGCRGLSRVD-MFLKEDGEVVLNEVNTLPGMTSYSRYPRMMA 323 Query: 280 YAGYSFRELL 289 AG E++ Sbjct: 324 AAGLPLSEVI 333 >gi|39936587|ref|NP_948863.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris CGA009] gi|39650443|emb|CAE28966.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris CGA009] Length = 329 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 45/322 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51 +L GG S ER VS++S +A SAL DA D DR S +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHSALPDADLWFWNDD-DRVHAVSAQALLAHARPFEEAFVP 63 Query: 52 --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + A + LHG E+G +QA+ EL +P+T SG AS L+ D Sbjct: 64 DGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFD 123 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+ +K+ + GV I + ++ + KP GSS G+ I Q Sbjct: 124 KVAAKRFAAIAGVRTVTGIALA--DAEAALEAHGRLIAKPACDGSSYGLFFINAKQ---- 177 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV---TEIAVPKSDFYSYELKYS 207 DL+ + LIE +V G+E TCGV+ D SL EI VP + Y KY Sbjct: 178 DLVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYL 236 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + ++ + P + +I + A AH+ + CRG SRSDF+ +LE N PG Sbjct: 237 AKSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPG 294 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 +T S++P+ G F + L Sbjct: 295 LTKASLYPKALNALGIPFVDFL 316 >gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067] Length = 370 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 145/282 (51%), Gaps = 29/282 (10%) Query: 36 IDVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 I+ ++S G ++ A L+ D + F +LHG GEDG VQ + E+L IPY +G+LAS+ Sbjct: 77 IETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSA 136 Query: 90 SMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLG 140 +MDK+ K++ + +P P++ V + + + ++ P +KP GSS+G Sbjct: 137 AMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVG 196 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---- 196 I Q + + ++ ++ ++++EQ V E+ GV+G+ D +VP Sbjct: 197 ISKATNKQELTEAMTEAFLYDR--RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILP 251 Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R+DF Sbjct: 252 EGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRADFFLTD 311 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG TP S++P + +G + L+ +V+ Sbjct: 312 -DNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVD 352 >gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b str. F2365] gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459] gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175] gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816] gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220] gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A] Length = 370 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83] gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83] Length = 330 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV+ GG S E VSL S S L F + ++R Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSI-LVNRFTM-DSQHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDL 154 S G+ + S+ L R T D LI+ P +KP GGSS+ V++ Q +P Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLP--- 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLN 210 +++ G++++IE+ + G E+TCG +L VTE+ V ++F+ ++ KY+ Sbjct: 183 AIEQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYNGA- 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I + + +Q + ++ + RGI R D++ + LE+N PGMTP Sbjct: 241 VEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTL-LEVNTTPGMTP 299 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG +E+L ++ D Sbjct: 300 TSFIPQQVRAAGMDMKEVLCTIIRDG 325 >gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 348 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F +LHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P V ++ ++ + ++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 + + + + + +++ ++LIEQ V E+ G++G+ + T E+ V DFY Sbjct: 186 QTKEELKEAIQLALTYDS--RVLIEQGVVAREIEVGLLGNTEVKSTLPGEV-VKDVDFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA+I D +++ A A +A+G G+SR DF F +++ E Sbjct: 243 YKAKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDF-FLSQDGQIYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + G ++ +L+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEELV 333 >gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 342 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 18/252 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCP 109 D+ VLHG GEDG +Q +LEL IPY + +SAL MDK + V +S G+ P Sbjct: 90 DVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSSALCMDKSLAYVVAASAGIATPKFR 149 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++L D + P +KP + GSS G+ + + + + S++ + ++LIE Sbjct: 150 TVLAG----DDAGAFTYPVFVKPARSGSSFGVSKVSGREELAAAI--STAAQYDAKVLIE 203 Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLD 222 + V G E+ C V+G+ + +V IA+ F ++ + S NST ++PA +P + Sbjct: 204 EAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQEEQPESGSENSTPIVPADVPAE 263 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 VQ+ A ++A+GC+G++R D FL D V E+N PG+T S +P M A A Sbjct: 264 TRARVQQTAKAIYRALGCKGLARVDMFLTD--DGTVVLNEVNTLPGLTSYSRYPRMMAAA 321 Query: 282 GYSFRELLLWMV 293 G L+ +V Sbjct: 322 GVPLSALIDRLV 333 >gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99] Length = 370 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208] Length = 370 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 348 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P V ++ ++ + ++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 + + + + + +++ ++LIEQ V E+ G++G+ + T E+ V +FY Sbjct: 186 QTKEELKEAIQLALTYDS--RVLIEQGVVAREIEVGLLGNTEVKSTLPGEV-VKDVEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PA+I D +++ A A +A+G G+SR DF F +++ E Sbjct: 243 YKAKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDF-FLSQDGQIYLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + G ++ +L+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEELV 333 >gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MW2] gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MSSA476] gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 356 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + ++ GG S+E EVS+ + + +A++ + V ++ Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65 Query: 37 DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ L ++ L +P D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] Length = 315 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AVL GG+S ER++SL SG A L+ G V +D+D R++G L PD+ + ++H Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q IL L +PY + + K +K V + GV S+ + + Sbjct: 67 GGPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFS 126 Query: 116 -------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 T+ + HL P V+KP +GGS LG+ + ++ +++ ++ LI Sbjct: 127 QLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183 Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E+YV G EL V+ G+ + + V Y ++ +Y+ S + +PA++ + ++ Sbjct: 184 ERYVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEK 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V++ A H +G +SR+D + D F +++NV PGMT S+ P +AA A S Sbjct: 244 VKKTAITVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAEAEGSLD 301 Query: 287 ELLLWMVED 295 +L +V + Sbjct: 302 DLYDALVRN 310 >gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 356 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ G+P P I Sbjct: 89 DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148 Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 R + + + P +KP GSS+GI +Q + + ++ ++ Sbjct: 149 SFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSVGISKCNDEQELKAGIAEAFQFDR 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L+IEQ ++ E+ V+G+ + T E+ V FY Y+ KY +PA++ Sbjct: 209 --KLVIEQGINAREVEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIRLQIPAEL 265 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ ++ +A A +A C G+ R+DF F ++F E N PG T S++P + Sbjct: 266 DQEVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQIFINETNAMPGFTAFSMYPSLWE 324 Query: 280 YAGYSFRELLLWMVE 294 G S+ +L+ ++E Sbjct: 325 NMGLSYSDLITKLIE 339 >gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] Length = 344 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S+ER+VS+ SG AL G + +DV D V Sbjct: 3 IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62 Query: 46 LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++K D+ F LHG GE+G VQA +L++I Sbjct: 63 AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135 YT +G SA++MDK +K + VP + + NR S H + P V+K G Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ +DQ + L ++++ ++++IE+Y+ G E T V+ + + I P Sbjct: 183 GSSIGVYIV-QDQEAYVKAL-DEAFSYEEEVVIEEYIQGKEYTVAVVDGEAYPIVLIE-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S FY Y+ KY + + PA + + +++Q A ++A+ + R DF+ D + Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDE-AG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G + L ++E Sbjct: 299 NMYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337 >gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] Length = 328 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 40/320 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE--------------------DAG--FKVSQIDV 38 + V+ GG +SE ++SL SGK L+ D G + VS+ D Sbjct: 7 LGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDF 66 Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 +G + L D+ FN +HG GE+G + A+ ELL IP++ SAL+ +K Sbjct: 67 TLQIGNDIVFL--DVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLS 124 Query: 99 VVSSCGVPVCPSILVNRF-TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 V+ +P ++R +D + + + P +K + GSS G+ +KK ++ L Sbjct: 125 VLREINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQAL 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGV---MGDAS-LDVTEIAVPKSDFYSYELKYSSLN 210 ++ Q++IE ++G E++ GV GD L VTEI + +++F+ Y KY Sbjct: 185 --QKAFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEI-ITENEFFDYAAKYEG-K 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMT 269 S + PA+IP++ +EV++ + + +G +G+ RS+F+F D + LEIN PG T Sbjct: 241 SQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIFVDGVPH---LLEINTVPGFT 297 Query: 270 PVSIFPEMAAYAGYSFRELL 289 SI P+ A G E Sbjct: 298 QKSIIPQQALAMGIELSEFF 317 >gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161] gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] Length = 370 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] Length = 342 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 18/259 (6%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D LHG GEDG +Q +L+L IP+ + +SA MDK+ + ++ G+P Sbjct: 76 KIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKVITNVMLEQAGIPQAR 135 Query: 110 SILVNRFTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + + S + L S P +KP GSS+G V K + L + + Sbjct: 136 FTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVG--VSKAENREELRAAIAKA 193 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++LIE+ + G E+ C V+G+ + V EIA P ++FY YE KY S S + Sbjct: 194 AKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIA-PSNEFYDYEAKYLSGTSGLYI 252 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + + ++ A A+Q +GC G++R DF F +V E+N PG T +S++P Sbjct: 253 PAHLESGVIETIRSTAQKAYQVLGCSGLARVDF-FVRNGSEVLLNELNTLPGFTSISMYP 311 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ + G S +EL+ +++ Sbjct: 312 KLMEHEGLSNQELIHRLIQ 330 >gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171] Length = 370 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + +P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAAIPQVPAVA 159 Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + + ++ P +KP GSS+GI Q + + ++ ++ Sbjct: 160 VRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVGISKATNKQELTEAMTEAFLYDR- 218 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+T ++ Sbjct: 219 -RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILPEGAVAKFYDYKAKYQDNNTTLII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ ++ +++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVEPEVLAQMKEYAIQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + +G + L+ +V+ Sbjct: 334 LLWQESGLPYPALIERLVD 352 >gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] Length = 356 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 59 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + D+ ++ +A A Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] Length = 345 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 48/338 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS---------------QIDVDRSVGLV-- 45 +L GG SSE ++SL S + L + +K+ +ID D LV Sbjct: 6 ILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLVKE 65 Query: 46 --------LAHL-----KPDLAFNVL----HGNFGEDGLVQAILELLEIPYTHSGILASA 88 +A K D + ++ HG +GEDG +QA+L+++ I Y +G+L+SA Sbjct: 66 VKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGI- 141 + MDK+ S + + + N+ DS I P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVGVS 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--F 199 V K++ + + + ++L+E+ ++G E+ V+G + DV+E A SD F Sbjct: 186 KVTNKNELLA---AGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHTF 242 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y+ KY S ++ LP + + +E Q A++A GC G +R D +F + Sbjct: 243 LDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVD-IFLGKDNNFYV 301 Query: 260 LEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 EIN PG TP S F + SF E+L +++D Sbjct: 302 NEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKDG 339 >gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] Length = 356 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + ++ GG S+E EVS+ + + +A++ + V ++ Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 37 DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ L ++ L +P D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 339 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 57/335 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 VL GG+S ER+VSLSSG ++AL + G V +D+ +G+ H++P Sbjct: 5 VLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDL--YLGINNKHIEPAYINLKSNKTF 62 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F LHG+ GE+G +QA+L++ Sbjct: 63 SYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLDIN 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 I YT +G + S L+MDK SK+++ S + V+ T I+ P V+KP Sbjct: 123 GIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPCSC 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ +++ P +L + + + + ++IE+ + G E + G++ +L V EI Sbjct: 183 GSSVGVTMVET----PSELNSAIEFAKKYENSVIIEEKIVGREFSVGILNGEALPVIEIK 238 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P FY Y+ KY + + PA I +I +Q A H + SR DF+ D Sbjct: 239 -PLIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQ- 296 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 S + LE N PGMTP S+ P+ A ++ +L Sbjct: 297 SNNAYCLEANTLPGMTPTSLLPQEALANDITYSDL 331 >gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 374 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 18/261 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG FGEDG +Q + E++ + Y +G+ +S+ SMDK+ K ++ G+P + Sbjct: 108 DVVLPLLHGPFGEDGTIQGLFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFV 167 Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNH 162 + + +D + +KP + GSS+GI ++ + + ++ H Sbjct: 168 AITDRQWRTERKRVLDDVAELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREH 227 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL 215 ++L+E V G E+ CGV+ ++++P DFY +E KY S S+ + Sbjct: 228 DPKVLVEAQVVGREVECGVLESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLS-TSSLTI 286 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++P + ++ LA +A+GC G++R DF + + E+N PG TP S FP Sbjct: 287 PAELPEEATARLRALAAEVFEAMGCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFP 345 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 +M A G + L+ M+ A Sbjct: 346 QMWAATGVDYAALVERMISTA 366 >gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] Length = 370 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 66/352 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 +L GG S+E EVSL + + +AL+ F+ I Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 37 -----------DVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPY 79 + ++S G ++ A L+ D + F +LHG GEDG VQ + E+L IPY Sbjct: 67 AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P P++ V + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI Q + + ++ ++ ++++EQ V E+ GV+G+ D Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDR--RVVVEQGVIAREIEMGVLGN---DTP 241 Query: 191 EIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP + FY Y+ KY N+ ++P ++ +I +++ A A + G Sbjct: 242 ICSVPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASG 301 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R+DF ++F E+N PG TP S++P + G + L+ +V+ Sbjct: 302 LVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVD 352 >gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 393 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + ++ GG S+E EVS+ + + +A++ + V ++ Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102 Query: 37 DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ L ++ L +P D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376 >gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis] Length = 342 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 329 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/325 (28%), Positives = 147/325 (45%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------ASALEDAGFKVSQIDVDRS 41 +A++ GG S E EVS S + A ++ DA K ID Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPV----CPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + C F+ + Q LI P +KP GGSS+ I DQ L Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRI--DQWEQLS 183 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDAS--LDVTEIAVPKSDFYSYELKYSSL 209 + ++ +LIE+ + G E+TCG ++ D S L VTE+ V F+ Y+ KY Sbjct: 184 TAVADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEV-VAHDTFFDYDAKYYG- 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I ++ + VQ + + C G R D++ + LE+N PGMT Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYIIEADGIPTL-LEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325 >gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14] Length = 348 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 43/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 6 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 65 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + + ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L ++ + ++L+EQ V+ E+ G++G+A + T E+ V FY Sbjct: 184 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY T +PAKI I ++ A A +AIG G+SR DF +F E Sbjct: 243 YDAKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PG T S++P + G ++ +L+ +V Sbjct: 302 LNTMPGFTQWSMYPLLWDNMGLAYPDLIEELV 333 >gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 356 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 393 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 96 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 140 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 141 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 200 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 201 KLVNDKLNYPVFVKPANLGSSIGISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 258 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + D+ ++ +A A Sbjct: 259 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 317 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 318 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376 >gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 320 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 15/294 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG+S ER+VSL SG A L+ G V +DVD L PD+ + ++HG Sbjct: 14 IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 GEDG +Q IL L++PY + + K +K V + GV S+ + + Sbjct: 74 GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133 Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q ++ P V+KP +GGS LG+ + ++ +++ ++ LIE Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAMVACFAYD--ERALIEA 191 Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G E+ V+ G+ + + V Y ++ +Y+ S + PA++ + VQ Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A H+ +G +SR+D + D F +++NV PGMT S+ P A AG Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQGTPWF-IDVNVVPGMTETSLLPLAAEAAG 304 >gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 315 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AVL GG+S ER++SL SG A L+ G V +D+D R++G L PD+ + ++H Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLRTFGPDVVWPLVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116 G GEDG +Q +L L +PY + + K +K V + GV + P L + F Sbjct: 67 GGPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGV-ITPDSLTLPQSYF 125 Query: 117 T-MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + M +Q +++ P V+KP +GGS LG+ + ++ +++ ++ LI Sbjct: 126 SQMGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183 Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E+YV G EL V+ G+ + + V Y ++ +Y+ S + +PA++ + + Sbjct: 184 ERYVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIET 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V+ A H +G +SR+D + D F +++NV PGMT S+ P +AA A S Sbjct: 244 VKATAVTVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAEAEGSLE 301 Query: 287 ELLLWMVED 295 EL +V + Sbjct: 302 ELYDALVRN 310 >gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] Length = 325 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+LMGG S E VSL S A L+ + + +I + D Sbjct: 4 IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ L + D AFN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 64 SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +N+ T + + P +K + GSS+G+ ++ I D Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDI--DQAI 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE+++ G E++ GV+ L +TEI V ++DF+ YE KY S Sbjct: 182 EKAFEVDTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEI-VSENDFFDYEAKYQG-KSK 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ + K+V+ +A + + +G SRS+++ + LE+N PG+T S Sbjct: 240 EITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNS 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S L +E+A Sbjct: 298 ILPQQAKAAGISLTNLFDNAIEEA 321 >gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] Length = 356 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 59 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREI 221 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + D+ ++ +A A Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 159/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51 + ++ GG S+E EVS+ + + +A++ + V I D D R + A +K Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A + C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 370 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + +P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAAIPQVPAVA 159 Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + + ++ P +KP GSS+GI Q + + ++ ++ Sbjct: 160 VRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVGISKATNKQELTEAMTEAFLYDR- 218 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+T ++ Sbjct: 219 -RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILPEGAVAKFYDYKAKYQDNNTTLII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ ++ +++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVEPEVLAQMKDYAIQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + +G + L+ +V+ Sbjct: 334 LLWQESGLPYPALIERLVD 352 >gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] Length = 353 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVD--------RSVGLVLAH 48 + ++ GG S E VS+ S +ALE F VS +D VLA Sbjct: 8 IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +P ++ + VLHG GEDG VQ + L+ P+ +G Sbjct: 68 GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L S+++MDK+ K ++ G+ P + +N + + + P +KP Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L +++S + ++++EQ VD EL C V+G L + + Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASLDP--RIVVEQGVDARELECAVLGKRQLKASVV 245 Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +D+Y Y KYS ST ++PA IP + +V+ +A + +A+ G++R DF + Sbjct: 246 GEIRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + ++ EIN PG T +S++P + +G +L+ +VE A Sbjct: 306 DDRTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351 >gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AVL GG+S ER++SL SG A L+ G V +D+D R++G L PD+ + ++H Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +L L +PY + + K +K V + GV S+ + + Sbjct: 67 GGPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFS 126 Query: 116 -------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 T+ + HL P V+KP +GGS LG+ + ++ +++ ++ LI Sbjct: 127 QLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183 Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E+Y+ G EL V+ G+ + + V Y ++ +Y+ S + +PA++ + ++ Sbjct: 184 ERYIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEK 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V+ A H +G +SR+D + D F +++NV PGMT S+ P +AA A S Sbjct: 244 VKTTAVTVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAKAEGSLE 301 Query: 287 ELLLWMVED 295 EL +V + Sbjct: 302 ELYDALVRN 310 >gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] Length = 356 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ G+P P Sbjct: 89 DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148 Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L + F ++ +S P +KP GSS+GI + + + ++ ++ Sbjct: 149 SFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSVGISKCNNEDELKSGIKEAFQFDR 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L+IEQ V+ E+ V+G+ + T E+ V FY Y+ KY +PA + Sbjct: 209 --KLVIEQGVNAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIQLQIPADL 265 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 D+ ++ +A A +A C G+ R+DF F +++ E N PG T S++P + Sbjct: 266 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 324 Query: 280 YAGYSFRELLLWMVE 294 G S+ +L+ +++ Sbjct: 325 NMGLSYADLIAKLID 339 >gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 359 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + VL GG S E EVSL + ++ ++ ++ + Sbjct: 5 LYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIER 64 Query: 37 --------DVDRSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D RS+G +L+ + P + +LHG GEDG VQ +LEL+ +PY +G+ Sbjct: 65 LIATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----------MDSQHLISPPYVIKPLK 134 L++AL++DK SKQV++ G+ V R+ ++ I P +KP Sbjct: 125 LSAALTLDKAMSKQVLAQAGINQT-EYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPAS 183 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS+GI + + ++ S++ +L+IE+ V G E+ V+G+ ASL Sbjct: 184 LGSSIGISRCTNRGELLAGIREAFSYD--KKLVIEREVSGREIQVAVIGNERPLASLPGE 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I F+ YE KY T +PA + + ++ LA A+QA GC G++R DF Sbjct: 242 FIH--DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFL 299 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 D +++ EIN PG T S++P M G ++ EL+ ++ A Sbjct: 300 DG-EGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHA 345 >gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] Length = 329 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/325 (29%), Positives = 146/325 (44%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------ASALEDAGFKVSQIDVDRS 41 +A++ GG S E EVS S + A ++ DA K ID Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPV----CPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + C F+ + Q LI P +KP GGSS+ I DQ L Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRI--DQWEQLS 183 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDAS--LDVTEIAVPKSDFYSYELKYSSL 209 + ++ +LIE+ + G E+TCG V+ D S L VTE+ V F+ Y+ KY Sbjct: 184 TAVADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEV-VAHDTFFDYDAKYYG- 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I + + VQ + + C G R D++ + LE+N PGMT Sbjct: 242 KSDEITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYIIEADGIPTL-LEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325 >gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MRSA252] gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS00] Length = 356 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 59 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREI 221 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + D+ ++ +A A Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] Length = 373 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 23/261 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ +LHG FGEDG +Q +LEL ++ Y SG+ ASA+ MDK K V + G+PV P + Sbjct: 108 DVVLPLLHGPFGEDGTLQGLLELADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYV 167 Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQ-SIPLDLLQSSSWN 161 ++ M S + P +KP + GSS+GI V +DQ ++L + S Sbjct: 168 VITDKQWRRDKDAAMASLTPLRYPVFVKPARAGSSVGISKVDSRDQLEAAIELARESD-- 225 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-------FYSYELKYSSLNSTHV 214 +++IE + G E+ CGV+ D+ + FY +E KY + + + Sbjct: 226 --PKVVIEAGIVGREVECGVLEGHGSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRL 283 Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 PA + + ++ L+ A A GC G++R D+ + +F EIN PG TPVS+ Sbjct: 284 ACPADVSAEDTARIKELSIKAFDAAGCEGLARVDWFYT-AEGTLFLNEINTLPGFTPVSM 342 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 FP + +G + +L+ ++E Sbjct: 343 FPAVWRESGLDYTDLITDLIE 363 >gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 356 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ G+P P Sbjct: 89 DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148 Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L + F ++ +S P +KP GSS+GI + + + ++ ++ Sbjct: 149 SFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSVGISKCNNEDELKSGIKEAFQFDR 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L+IEQ V+ E+ V+G+ + T E+ V FY Y+ KY +PA + Sbjct: 209 --KLVIEQGVNAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIQLQIPADL 265 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 D+ ++ +A A +A C G+ R+DF F +++ E N PG T S++P + Sbjct: 266 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 324 Query: 280 YAGYSFRELLLWMVE 294 G S+ +L+ +++ Sbjct: 325 NMGLSYADLIAKLID 339 >gi|160903079|ref|YP_001568660.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95] gi|190359202|sp|A9BI46|DDL_PETMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160360723|gb|ABX32337.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 24/304 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + ++ GG S ERE+SL+S K +++ + G+K +D +D + + K AFNV+H Sbjct: 3 IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFINKIQNYK--FAFNVVH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG + ++LE+L I YT S + DK + + I + + T+ Sbjct: 61 GDYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNY-------IQMPQTTLT 113 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ ++ P P++IKP K GSS G+ +I + L ++L+++Y+ G E Sbjct: 114 NKLILPPFEYPFIIKPRKSGSSKGVYIIHNENEYKFYL--EKDLKEFQEVLVQEYIKGRE 171 Query: 177 LTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLA 231 +T + L + EI +PK +FY YE KY++ T + P P I +++ + Sbjct: 172 ITISYIQKNEEFILLPILEI-IPKKEFYDYEAKYTN-GLTELKPQLNSPEKIIQKINEIG 229 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 Q + + + R D + +V+ LEIN PG+T +S P A AG SF EL+ Sbjct: 230 NHVMQTLTFKDMFRIDAILK--DDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINI 287 Query: 292 MVED 295 ++++ Sbjct: 288 IIKN 291 >gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 44/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41 +A++ GG SSE +VSL S + S + + V +DV DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 42 --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP--- 151 + S G+ V S+L+ R ++ I+ P +KP GSS G+ +K DQ P Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207 + ++SS +++E Y+DG E+T G+ V TE+ V ++F+ Y+ KY+ Sbjct: 188 VAFMESSD------VMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264 + PA+I + + V + + + GI R D++ D +V LE+N Sbjct: 241 G-QVDEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNT 299 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 300 TPGMTTTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] Length = 323 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 34/317 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 +AV+MGG +SE E+SL SG A+ L+ ++V I + ++ Sbjct: 5 IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L H K D FN +HG+ GEDG +QA LELL IP T +AL+ +K V+ Sbjct: 65 SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + S +N ++ + +I P +K + GSS GI + I L Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE + G E++ GV+ L +TEI + ++DF+ Y+ KY ST Sbjct: 183 EIAFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEI-LSENDFFDYQAKYEG-KST 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA + ++ ++ +A + + +G +RS+F+ ++ LE+N PGMT S Sbjct: 241 EITPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHS 298 Query: 273 IFPEMAAYAGYSFRELL 289 I P+ A AG S EL Sbjct: 299 ILPQQAKEAGISLPELF 315 >gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 44/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41 +A++ GG SSE +VSL S + S + + V +DV DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 42 --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP--- 151 + S G+ V S+L+ R ++ I+ P +KP GSS G+ +K DQ P Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207 + ++SS +++E Y+DG E+T G+ V TE+ V ++F+ Y+ KY+ Sbjct: 188 VAFMESSD------VMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264 + PA+I + + V + + + GI R D++ D +V LE+N Sbjct: 241 G-QVDEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNT 299 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 300 TPGMTTTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 377 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 131/259 (50%), Gaps = 25/259 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG +GEDG +Q +LE+ +I Y SG+LASA+ MDK K V ++ G+ V P + Sbjct: 108 DVVFPLLHGPWGEDGTLQGLLEMSDIRYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYV 167 Query: 112 LV--NRFTMDSQ------HLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNH 162 ++ +T D Q + P +KP +GGSSLGI V D+ LD + + H Sbjct: 168 VIRDRDWTRDPQACRTAVDQLGYPVFVKPARGGSSLGISKVTSLDE---LDAAIAEARAH 224 Query: 163 GDQLLIEQYVDG---IELTCGVMGDASLD----VTEIAVPKS--DFYSYELKYSSLNSTH 213 ++++E V IE+ + L E+AV DFY +E KY + Sbjct: 225 DPKVIVEASVKNPREIEVGVLGGLNGGLPQVSVCGEVAVSGGGHDFYDFETKYLPEGEQY 284 Query: 214 V---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +PA +P I E++ A A AI G++R DF D R V EIN PG TP Sbjct: 285 TALSVPADLPEQIAAEIRAKALTAFDAIEGEGLARVDFFVDEDGR-VLINEINTMPGFTP 343 Query: 271 VSIFPEMAAYAGYSFRELL 289 S+FP + A +G + L+ Sbjct: 344 TSMFPRLWAASGMDYPSLV 362 >gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] Length = 366 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 164/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A++ GG S+E +VSL S K + L+ F + I ++ Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65 Query: 40 --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 R V ++ L +P D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 PY I++SA MDK +K+++ G+ V P I + ++ + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+GI + + L S ++ + +++IE + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEAEFNAAL--SMAFEYDLKVIIESAIVGREIECAVLGNEEPEVSP 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI + + FY+Y KY + V+PA + I +++ A A+Q + C G+SR D Sbjct: 244 CGEIVLNDA-FYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F +V EIN PG T +S++P++ G ++ L+ ++E Sbjct: 303 -VFLTEDNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIE 348 >gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 64 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q ++ +GCRG++R D Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDRG 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG S EL+ Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGISLPELI 333 >gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] Length = 393 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36 + ++ GG S+E EVS+ + + +A++ + V ++ Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102 Query: 37 DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ L ++ L +P D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +H I + P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI K + L ++ +L+IEQ V+ E+ V+G+ + T E+ V Sbjct: 223 GI--SKCSNEVELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376 >gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 A + PD + ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ ++ ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 186 RAEELQAAVTEAGKYD--SKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S N+ +PA +P ++ +++Q A ++ +GCRG++R D LF + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARID-LFLREDGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M AG++ E+L Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEIL 333 >gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] Length = 350 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 33/306 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVL----------AHLKPDLAF 55 GI+ + L G ++ ED + + DRSV GL++ ++ D+ Sbjct: 42 GITKSGDWRLCDGPE--ASWEDGAHRPVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVL 99 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 VLHG GEDG Q + EL IPY + +SAL MDK + VV+ G+P P+ Sbjct: 100 PVLHGKLGEDGAPQGLFELSGIPYVGCDVQSSALCMDKSLAYTVVAEAGIPT-PTF---- 154 Query: 116 FTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +T+ I P P +KP + GSS G V K + LD +++ + +++LIE+ Sbjct: 155 WTLYPGDEIDPGVLPYPVFVKPARSGSSFG--VSKVSSAAELDEAIATARQYDEKVLIEE 212 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDI 223 V E+ C ++G+ + +V +A+ F ++ + S N+T ++PA IP + Sbjct: 213 GVVAEEIGCAILGNGADLVTGEVDHVALSHGFFKIHQEDAPETGSENATFIVPADIPAEA 272 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + V+ A ++A+GCRG++R D +F V E+N PG+T S +P M A AG Sbjct: 273 QELVKTEAQRVYRALGCRGLARVD-MFLKADGTVVLNEVNTLPGLTSYSRYPRMMAAAGI 331 Query: 284 SFRELL 289 S ELL Sbjct: 332 SMTELL 337 >gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1] Length = 365 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 20/259 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K ++S GV V ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGRYVV 159 Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + + P +KP +GGSS+GI + + L+ + H Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217 ++LIEQ + G E+ C V+ +VP FY +E KY S + A Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277 Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 LD + VQ++A A Q +GC G++R D P V+ E N PG T S FP Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336 Query: 276 EMAAYAGYSFRELLLWMVE 294 M +G ++ +++ ++E Sbjct: 337 LMWQASGMTYAQIVSELIE 355 >gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans] Length = 343 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 47/332 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ ++ ++ I + +S G+ KP Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKS-GVWKMCEKPCVEWENDNC 64 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+AF+VLHG GEDG +Q + EL IP+ I Sbjct: 65 CSAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDI 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V + G+ + N+ + P +KP + GSS G V Sbjct: 125 QSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFG--VK 182 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200 K + + LD + + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 183 KVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFR 242 Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E + S N+ +PA + + +Q A + A+GCRG++R D R V Sbjct: 243 IHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFLQDNGRIV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M A G +F EL+ Sbjct: 303 L-NEVNTLPGFTSYSRYPRMMAAVGIAFPELI 333 >gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus] gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus] Length = 354 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 17/257 (6%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L D+ F ++HG GEDG +Q +L L+ +PY S +L SA+ MDK +K+++ G+ + Sbjct: 92 LSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSDVLGSAICMDKDITKRLLRDSGLSIT 151 Query: 109 P--SILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P + L + +F ++ + P+ +KP+ GSS+G+ + D S L + ++ Sbjct: 152 PFRTFLAHEKKKLKF-LNFADMFGLPFFVKPVNQGSSIGVAKVNDDYSFHSALDIAFFYS 210 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPA 217 H +++IE + G EL C V+G+ +T EI DFY+Y KY NS V+PA Sbjct: 211 H--KIIIESCIAGRELECAVLGNNENPITSVCGEIIKKNDDFYTYCDKYVDHNSEIVIPA 268 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 + + +++ +A Q + C G++R D FLF ++ E+N PG T S++ + Sbjct: 269 VLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFG--KDRIIINEVNTLPGFTSDSMYLK 326 Query: 277 MAAYAGYSFRELLLWMV 293 + G + LL ++ Sbjct: 327 LWQATGINISTLLTRLI 343 >gi|325925852|ref|ZP_08187221.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] gi|325543683|gb|EGD15097.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] Length = 246 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 14/231 (6%) Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---P 127 + +P+ SGIL SA++MDK +K+V+ G+ V P + NR T D + LI+ P Sbjct: 1 MANLPFVGSGILGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQLGLP 60 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+G+ ++ L + +++H ++L+E + G E+ C V+G+A+ Sbjct: 61 LFVKPANQGSSVGVSQVRSADQFAAALALALAYDH--KVLVEAAIAGREIECAVLGNATP 118 Query: 188 DVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + E+ V + FYSY+ KY S + V+PA I + +Q++A A+QA+ C G+ Sbjct: 119 QASVCGEVVVHDA-FYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGL 177 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +R D R V E+N PG T +S++P++ +G +R L+ ++E Sbjct: 178 ARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 227 >gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] Length = 332 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ S + S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S H++ D A+ +HG GE+G++Q +L+ +PY+ S +L AL+ DK + Sbjct: 68 SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 GV V SIL+ R + + + P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSLNS 211 ++ D+++IE ++DG E++ GV D S+ TE+ V ++F+ Y KY+ Sbjct: 188 ---AFMESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEV-VTSNEFFDYNAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268 + PA+I D K V + + GI R D++ D V LEIN PGM Sbjct: 243 QEITPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +E+L +VE+ Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus brevis ATCC 367] gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367] gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis] Length = 380 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34 + +L GG SSE +VS S A++ + VS Sbjct: 9 VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68 Query: 35 ------QIDVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 Q VD S L L+ K D+ F ++HGN GEDG +Q + LL+ P+ SG Sbjct: 69 TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGGS 137 +LASA+S DK +KQV+++ G+ +++ NR D Q + IKP GS Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE---IA 193 S+GI Q LD + + ++ + ++L+EQ +DG E+ ++G+ ++ I Sbjct: 189 SVGIHKASNVQEY-LDGV-ADAFRYDYKVLVEQTIDGPQEVEISILGNEQPQASKLGAIR 246 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+SD FY Y K+ + T +P K+ ++ +E+ ++ + A+G +G++R D+L Sbjct: 247 VPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYL-- 304 Query: 252 PLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +S+ + E+N PG T +S++P++ G ++ +L+ ++E Sbjct: 305 -VSKDGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIE 348 >gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 362 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 191 GISKCNNEEELKSGITEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 248 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344 >gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909] Length = 357 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339 >gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 356 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66 I S E+ L +G+A ++SQ+ + S G +P D F +LHG GEDG Sbjct: 59 IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124 +Q + E+L++PY +G+L++A SMDK+ KQ+ G+P P I R + +H I Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +KP GSS+GI + + + ++ ++ +L+IEQ V+ E+ Sbjct: 164 KLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G+ + T E+ V FY Y+ KY +PA + ++ ++ +A A Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEA 280 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF F +++ E N PG T S++P++ G S+ EL+ ++E Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339 >gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] Length = 348 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 165/333 (49%), Gaps = 45/333 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65 Query: 34 -SQIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + +D S+ + + + D A F +LHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P V ++ + + ++ +S P +KP GSS+G I Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVG---I 182 Query: 145 KKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 K +SI L + + + ++LIEQ V E+ G++G+ + T E+ + FY Sbjct: 183 SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEV-IKDVAFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY + +PA I I +++ A A +AIG G+SR DF F ++ Sbjct: 242 DYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDF-FLAEDGNLYLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S++P + G S+ +L+ +V Sbjct: 301 ELNTMPGFTQWSMYPLLWDNMGLSYSDLIEELV 333 >gi|544147|sp|P35660|DDL_ANACE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|142171|gb|AAA22065.1| D-alanine:D-alanine ligase [Anaplasma centrale] Length = 205 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 3/182 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G + + +D++R L + PDL +N LHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 GEDG +L++L + YTHS + AS++ MDK+ +K V+ S G+ S+L + Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP+ GGS++G+ I +S LDL + G ++L+E+Y+ G E+ Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFS-RSEYLDLSVHADALEG-RMLVEEYIPGQEVHT 192 Query: 180 GV 181 V Sbjct: 193 AV 194 >gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC 12228] gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228] gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU045] Length = 357 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEEELKSGITEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339 >gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] Length = 362 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 248 VAFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344 >gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A] gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A] gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 357 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339 >gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] Length = 361 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 16/255 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ G+P P Sbjct: 94 DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 153 Query: 110 SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 S L + + ++I + P +KP GSS+GI ++ + + ++ ++ Sbjct: 154 SFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSVGISKCNNEKELKSGIEEAFQFDR 213 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +L+IEQ ++ E+ V+G+ + T E+ V FY Y+ KY +PA++ Sbjct: 214 --KLVIEQGIEAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKVRLQIPAEL 270 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 D+ ++ +A A +A C G+ R+DF F +++ E N PG T S++P + Sbjct: 271 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 329 Query: 280 YAGYSFRELLLWMVE 294 G S+ +L+ +++ Sbjct: 330 NMGLSYPDLIAKLID 344 >gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] Length = 327 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 148/322 (45%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AVLMGG SSE +SL+SG AL+ + V I + D Sbjct: 8 IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + PD FN +HG GEDG + A ELL IP T SG +ALS +K V+ Sbjct: 68 SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127 Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV S N+ +D +I+ P +KP + GSS GI + ++ L Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE + G E++ G + TEI V ++DF+ YE KY S Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEI-VSENDFFDYEAKYEG-KSQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++V+ + + +G+ RS+F+ +++EIN PG++ S Sbjct: 244 EITPARISESDTQKVKAETKRIYNLLKMKGVCRSEFIIQ--DGVPYFIEINTTPGLSSES 301 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 I P+ AG E +++ Sbjct: 302 IIPKQVKDAGMDLGEFFGELID 323 >gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 12/275 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 64 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + E + S N+ +PA + + +Q ++ +GCRG++R D Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNG 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R V E+N PG T S +P M A AG S EL+ Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGISLPELI 333 >gi|192292409|ref|YP_001993014.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1] gi|192286158|gb|ACF02539.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1] Length = 329 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 143/321 (44%), Gaps = 43/321 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID---VDRSVGLVLAHLKP-------- 51 +L GG S ER VS++S +A SAL DA D S +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHSALPDADLWFWNDDDCVHAVSAQALLAHARPFEEAFVPD 64 Query: 52 -------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 + A + LHG E+G +QA+ EL +P+T SG AS L+ DK Sbjct: 65 GEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + +K+ S GV I + ++ + KP GSS G+ I Q D Sbjct: 125 VAAKRFASIAGVRTVTGIALA--DAEAALEAHGRLIAKPACDGSSYGLFFINAKQ----D 178 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV---TEIAVPKSDFYSYELKYSS 208 L+ + LIE +V G+E TCGV+ D SL EI VP + Y KY + Sbjct: 179 LVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYLA 237 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ + P + +I + A AH+ + CRG SRSDF+ +LE N PG+ Sbjct: 238 KSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPGL 295 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T S++P+ G F + L Sbjct: 296 TKASLYPKALNALGIPFVDFL 316 >gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2] gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1] gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3] gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08] Length = 365 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 129/264 (48%), Gaps = 30/264 (11%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG +Q +LE+ + Y G+ ASA MDK +K +++ GV V P ++ Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILAEAGVLVGPYVV 159 Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 V + + D ++ P +KP +GGSS+GI + L+ ++ H Sbjct: 160 VRDHEWREDRDAILKAAAHLEYPLFVKPARGGSSIGISRVTNPDG--LEAAIEAAREHDS 217 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD------------FYSYELKYSSLNST 212 ++LIEQ + G E+ C V LD A P++ FY +E KY S Sbjct: 218 KVLIEQGIQGREIECSV-----LDGRHGAAPRASAPGEIVLHDPDGFYDFEAKYLSGGQK 272 Query: 213 HVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + A+ LD VQ++A A + +GC G++R D P V+ E N PG T Sbjct: 273 ASVHARANLDDETRIRVQKVATKAFRVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTR 331 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 S FP M +G ++ +++ ++E Sbjct: 332 SSGFPLMWQASGMTYAQIVSELIE 355 >gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 375 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 25/293 (8%) Query: 15 SLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 S+ + A DAG ++ +D DR + A D+AF ++HG + EDG VQ LE Sbjct: 74 SIGADHPLAELFRDAGGVHLATLDEDR----LTAREPIDVAFPLMHGAYAEDGTVQGKLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP----- 126 +L + Y G+ +SAL MDK + V+ + GVP + V R + D +++ Sbjct: 130 MLGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQL 189 Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG 183 P +KP +GGSS+GI + S+ + + + ++L+EQ V G E+ CG++G Sbjct: 190 GYPVFVKPARGGSSVGISRVTGPDSLAAAIDAARLVD--PKVLVEQAVVGAREVECGILG 247 Query: 184 DASL-----DVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 EI + D FY Y KY + +PA + + + VQ LA Sbjct: 248 GDGTAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFT 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ C G++R D P +V EIN PG T S++P M +G + EL+ Sbjct: 308 ALDCEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELI 359 >gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 43/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33 +L GG S+EREVS+ S ++ A+ F V Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66 Query: 34 -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+MD Sbjct: 67 NATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126 Query: 93 KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI K Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203 + L ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI D+ +++ A A +AIG G+SR +F + ++ ++N Sbjct: 244 AKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDKG-EISLNKLN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + S+ +L+ +V+ Sbjct: 303 TMPGFTQWSMYPLLWDNMRISYPDLIERLVD 333 >gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus] gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus] Length = 343 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 A + PD + ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ ++ ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 186 RAEELQAAVTEAGKYD--SKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S N+ +PA +P ++ +++Q A ++ +GCRG++R D LF + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARID-LFLREDGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M AG++ E+L Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEIL 333 >gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] Length = 362 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A++ ++V I ++ + L Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+ ++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 248 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T S++P + G S+ +L+ +++ Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344 >gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 370 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI K L+ + ++ + Sbjct: 160 VRLIDWKNYQEEMVSEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELEDAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYSALIERLVD 352 >gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium] Length = 343 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 47/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E +VS+ S A+ + ++ I + +S L KP Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCD-KPCRDWENYAG 64 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 65 YPAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDI 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +S MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 125 QSSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKV 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200 + + + + ++ ++ ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 185 CRAEELQAAVTEAGKYDC--KILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFK 242 Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D LF + Sbjct: 243 IHQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARID-LFLREDGCI 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 302 VLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 110] gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110] Length = 330 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 46/329 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP---- 51 + +L GG + ER VS++S +A AL +A + DV+ V +V L H +P Sbjct: 5 ITILFGGSNRERLVSVASAQALHQALPEA--DLWWWDVEDRVHVVQSKQLLEHARPFEDE 62 Query: 52 --------------DLAFNV-------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D A LHG E+G +Q + E +P+T SG +S L+ Sbjct: 63 FKPGTSGIPLVQALDQAKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLA 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+ +K + GV +I ++ +D+ + KP + GSS G+I + Q Sbjct: 123 FDKIAAKHFAALGGVTPPANIALD--DIDAAFAEYGRLIAKPARDGSSYGLIFVNARQ-- 178 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205 DL+ + ++ +IE Y+ G+E TCGV+ SL EI +P + Y K Sbjct: 179 --DLVAVRNAAKHEEYVIEPYIAGVEATCGVLERTDGSIVSLPPIEI-IPGEGNFDYAAK 235 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y + + P + +I +++ A LAH+A+ C G SRSDF+ ++ + +LE N Sbjct: 236 YLLSTTQEICPGRFTPEITAALKQQAMLAHRAMSCTGYSRSDFIVS--AKGLVYLETNTL 293 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG+T S++P+ G +F + L +VE Sbjct: 294 PGLTKSSLYPKALKAEGIAFVDFLRGLVE 322 >gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] Length = 283 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 132/250 (52%), Gaps = 13/250 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q LE+L +PY + IL+S+++MDK+ +K+V+ S G+ P + Sbjct: 23 VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVA 82 Query: 113 V------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 V + + + ++ P +KP GSS+GI K + L ++ + ++ Sbjct: 83 VIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--SKAEDLAGLRKALDLAFKYDSRV 140 Query: 167 LIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 L+EQ V+ E+ G++G+A + T E+ V FY Y+ KY T +PAKI I Sbjct: 141 LVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYDYDAKYIDNKITMEIPAKIDESI 199 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ A A +AIG G+SR DF +F E+N PG T S++P + G Sbjct: 200 MDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNTMPGFTQWSMYPLLWDNMGL 258 Query: 284 SFRELLLWMV 293 ++ +L+ +V Sbjct: 259 AYPDLIEELV 268 >gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] Length = 370 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 163/352 (46%), Gaps = 66/352 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGF------------------------------- 31 +L GG S+E EVSL + + +AL+ F Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66 Query: 32 ------KVSQIDVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPY 79 K++ + ++S G + A L+ D + F +LHG GEDG VQ + E+L IPY Sbjct: 67 TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI K L + ++ + ++++EQ V E+ GV+G+ D Sbjct: 187 KPANLGSSVGI--SKATNKKELAEAMTEAFLYDRRVVVEQGVVAREVEMGVLGN---DTP 241 Query: 191 EIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP + FY Y+ KY N+ ++P ++ +I ++++ A A + G Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASG 301 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R+DF F ++F E+N PG TP S++P + G + L+ +V+ Sbjct: 302 LVRADF-FLTADNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVD 352 >gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928] gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 346 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 151/341 (44%), Gaps = 57/341 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E +S+ S + A L+ + ++ I + R L Sbjct: 6 IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65 Query: 47 ---------AH------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AH ++ DL VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP-----PYVIKPLKGGSSL 139 S L +DK + V+ + G I RF T+ I P P +KP + GSS Sbjct: 126 TSVLCIDKTLTYLVIQNEG------IATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSF 179 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVP 195 G+ + + + ++ ++ ++LIE+ V G E+ C V+G +V +A+ Sbjct: 180 GVSKVSGKDELSGAIEEARLYDA--KVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALT 237 Query: 196 KSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 F ++ + S N+T ++PA IP +Q A L ++A+GCRG+SR DF Sbjct: 238 HGFFKIHQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFLKE 297 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V E+N PG+T S +P M A AG+ E++ +V Sbjct: 298 -DGTVVLNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337 >gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047] Length = 297 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 22/306 (7%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAFNVLH 59 MGG ++ER++SL SGKA SAL AG ID G L+ D FN++H Sbjct: 1 MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G GE+G + +L + +P T S + ASAL+M+K + K + +P RF + Sbjct: 61 GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTA------RFQVL 114 Query: 119 ----DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D Q ++ P ++KP GSS+G+ + + + + ++ ++ ++ E + Sbjct: 115 SAESDWQQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAVQYDQ--TVIAESW 172 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++ L ++ + +FY Y+ KY ++ +++P + + + +Q +A Sbjct: 173 ITGGEYTVGIIKGQPLPGIKLETAR-EFYDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIA 231 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A ++GCRG R D + D + LE+N PGMT S+ P AA G SF L+L Sbjct: 232 LRAFDSLGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQ 291 Query: 292 MVEDAS 297 ++ A+ Sbjct: 292 ILSTAN 297 >gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] Length = 356 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 162/337 (48%), Gaps = 48/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44 + ++ GG S+E +VS+ + + +A+ +++ I ++ + L Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65 Query: 45 VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 VL +++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P S L + + ++I + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T E+ V Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEV-VKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF F + Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ E N PG T S++P + G S+ +L+ ++ Sbjct: 302 IYINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLI 338 >gi|308446762|ref|XP_003087258.1| hypothetical protein CRE_28014 [Caenorhabditis remanei] gi|308258347|gb|EFP02300.1| hypothetical protein CRE_28014 [Caenorhabditis remanei] Length = 328 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 27/311 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--AHLKP------- 51 +AV+ GGIS E EVS++S + A+ G + + R + H P Sbjct: 9 VAVIGGGISDEHEVSIASAASVVRAVAALGLEAVPFTIARDGRWLTDDGHRLPAHEALAR 68 Query: 52 ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 DLAF VLHG GEDG + +L + IP+ + + A AL MDK +K + G+ Sbjct: 69 IADCDLAFPVLHGVDGEDGAIAGLLRMAGIPFVGAPVRAGALGMDKWATKLIADDLGIAT 128 Query: 108 CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 L + + PP V+KP GGSS G+ V+ + + Q+ + +G Sbjct: 129 SRGALAGGWAAPVGAAFASELRPPLVVKPTTGGSSNGVFVVADRSDLVATVEQARA--YG 186 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L+E+YV G E+ V DA+ + EI V + KY ++ +PA Sbjct: 187 ETVLVEEYVRGREVDIAVFRDAAGGLRVGSTLEIGVVPGGVFDRAEKYDG-SAEFTIPAS 245 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + +++ A L ++A+GC G++R DF V E+N PGMT S P M Sbjct: 246 LDPREEGAIRQAAVLLYEALGCAGVARFDFF--ATDDGVVLNEVNTSPGMTEQSQVPRMY 303 Query: 279 AYAGYSFRELL 289 A G + L+ Sbjct: 304 AAVGLDYAGLV 314 >gi|316933192|ref|YP_004108174.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1] gi|315600906|gb|ADU43441.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1] Length = 329 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 146/322 (45%), Gaps = 45/322 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51 +L GG S ER VS++S +A AL DA D DR + +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALQRALPDADLWFWNDD-DRVHCVTAQTLLAHARPFEEPFAP 63 Query: 52 --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 D+A + LHG E+G +QA+ EL +P+T SG AS L+ D Sbjct: 64 DGEMVGPLDIALDRAAAEHRLLVLGLHGGVAENGELQAMCELRRVPFTGSGAAASHLAFD 123 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K +K+ + GV S+ + ++ + KP + GSS G+ I Q Sbjct: 124 KAAAKRFAAIAGVRT--SVGIALADAEAALETHGRLIAKPTRDGSSYGLFFINARQ---- 177 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDAS---LDVTEIAVPKSDFYSYELKYS 207 DL+ + LIE +V G+E TCGV+ D S L EI VP + Y KY Sbjct: 178 DLVAVREAAKTEDYLIEPFVAGVEATCGVLEAEDGSLLALPPIEI-VPADGGFDYTAKYL 236 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + ++ + P + ++ + A AH+ + CRG SRSDF+ +LE N PG Sbjct: 237 AKSTQEICPGRFAPEVAAMIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPG 294 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 +T S++P+ G F + L Sbjct: 295 LTGASLYPKALKAQGIDFVDFL 316 >gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] Length = 328 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 154/324 (47%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG + E +SL S + ++V +I + D Sbjct: 5 IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN+LHG+ GEDG + +++ IPYT L SA++M+K +K VV Sbjct: 65 SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124 Query: 101 SSCG-VPVCPSI-LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + SI L + +++ Q ++ P IKP GGSS+G+ +K + L Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEAL- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV---TEIAVPKSDFYSYELKYSSLNS 211 +++ Q+L+E++V G E + GV G + V TEI V +F+ +E KY + + Sbjct: 184 -DKAFDEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEI-VSSKEFFDFEAKYVAGVT 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P ++ + V R+A ++ + C+G R D+ S K +++EIN PG T Sbjct: 242 NEITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTET 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S+ + G R+ ++E+ Sbjct: 302 SLISQQVRAYGMEVRDFYTQLIEE 325 >gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Thermoanaerobacter tengcongensis MB4] gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Thermoanaerobacter tengcongensis MB4] Length = 389 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 25/264 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F HG GEDG +Q + +L IPY SG++ SA MDK+ K + + +P+ + Sbjct: 103 DVIFPAFHGTHGEDGTMQGLFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYL 162 Query: 112 --LVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 L + + + + + P +KP GSS+GI K + D ++ + + + Sbjct: 163 WFLRKEYEKNKEAMLDLIESKLKYPMFVKPANLGSSIGISKAKNRDEL-FDAIEIAIY-Y 220 Query: 163 GDQLLIEQYV-DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKY------SSLNST 212 ++++E+ V D +E+ C VMG D + + E+ VP +F SY+ KY ++T Sbjct: 221 DRKIIVEEAVKDPMEVNCSVMGIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTT 280 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +PA IP + KE+Q LA Q + C G++R DFL + + KV+ EIN PG Sbjct: 281 RQIPAPIPEEKTKEIQELAKKVFQILDCSGLARIDFLLEKETMKVYVNEINTIPGSFAFY 340 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++ + G SF +L+ ++E A Sbjct: 341 LWKPL----GISFEKLIDRLIEYA 360 >gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] Length = 383 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 25/264 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F HG GEDG +Q + +L IPY SG++ SA MDK+ K + + +P+ + Sbjct: 97 DVIFPAFHGTHGEDGTMQGLFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYL 156 Query: 112 --LVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 L + + + + + P +KP GSS+GI K + D ++ + + + Sbjct: 157 WFLRKEYEKNKEAMLDLIESKLKYPMFVKPANLGSSIGISKAKNRDEL-FDAIEIAIY-Y 214 Query: 163 GDQLLIEQYV-DGIELTCGVMG-DASLDVT--EIAVPKSDFYSYELKY------SSLNST 212 ++++E+ V D +E+ C VMG D L+V+ E+ VP +F SY+ KY ++T Sbjct: 215 DRKIIVEEAVKDPMEVNCSVMGIDRDLEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTT 274 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +PA IP + KE+Q LA Q + C G++R DFL + + KV+ EIN PG Sbjct: 275 RQIPAPIPEEKTKEIQELAKKVFQILDCSGLARIDFLLEKETMKVYVNEINTIPGSFAFY 334 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++ + G SF +L+ ++E A Sbjct: 335 LWKPL----GISFEKLIDRLIEYA 354 >gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262] gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262] Length = 370 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQEEMVTEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVEPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023] Length = 370 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQEEMVTEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVEPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] Length = 377 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D + V+HGN GEDG VQ + LL+ PY SGI +SA+S DK +K++++ G+ + Sbjct: 96 DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 LV D + + +KP K GSS+GI + ++ + + ++++ + Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E + E+ ++G+ + ++ I VP+ D FY YE K+ + LP + Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278 D+ KE+ +A A++A+G +G++R DFL D V +L E N PG T +S++P+M Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331 Query: 279 AYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 332 NISGISYSELIDRLIQ 347 >gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA+ MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315] gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315] Length = 321 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 21/254 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q LE+L +PY + +++S+++MDK+ +K+V+ S G+P + Sbjct: 61 VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTV 120 Query: 113 VNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +D Q L ++ P +KP GSS+GI K + L + + Sbjct: 121 Y----IDGQDLEACLVETLARLTFPIFVKPANMGSSVGI--SKAQTKVELRKAIQLALTY 174 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++LIEQ V E+ G++G+ + T E+ + DFY Y+ KY T +PA + Sbjct: 175 DSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKDVDFYDYQAKYVDNKITMAIPADV 233 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I E++ A +A +A+G G+SR DF F +V+ E+N PG T S++P + Sbjct: 234 DQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQVYLNELNTMPGFTQWSMYPLLWE 292 Query: 280 YAGYSFRELLLWMV 293 G ++ +L+ +V Sbjct: 293 NMGLAYPDLIEELV 306 >gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956] gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 377 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D + V+HGN GEDG VQ + LL+ PY SGI +SA+S DK +K++++ G+ + Sbjct: 96 DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 LV D + + +KP K GSS+GI + ++ + + ++++ + Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E + E+ ++G+ + ++ I VP+ D FY YE K+ + LP + Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278 D+ KE+ +A A++A+G +G++R DFL D V +L E N PG T +S++P+M Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331 Query: 279 AYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 332 NISGISYSELIDRLIQ 347 >gi|291533191|emb|CBL06304.1| D-alanine--D-alanine ligase [Megamonas hypermegale ART12/1] Length = 232 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 15/233 (6%) Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------SP 126 ++++PYT +L+SA++MDK+ SK + S G+ P+ L+ R T ++L+ S Sbjct: 1 MIDMPYTSCSVLSSAITMDKVASKHLFRSTGIST-PNCLIYRKTDTDRNLVEEIAGKFSM 59 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P V+K GSS+G+ +++K + + + + + + D +L+E+++ G EL+ V G+ Sbjct: 60 PVVVKAASQGSSIGVEIVEKKEDLQKAI--DACFEYDDAILVEEFIKGRELSIPVYGNKE 117 Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +L + EI S Y Y+ KY+ S H++PA + ++ ++Q+L A CRG+ Sbjct: 118 KKALPIIEITT-NSGRYDYKSKYTKGESFHIIPAPLSEELTAKIQKLCIDACTVADCRGV 176 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D + + LEIN PGMT S+ P+ A + G SF EL +++ A Sbjct: 177 VRVDVMLSE-ENIPYVLEINSVPGMTQTSLVPDAANHVGISFGELCEMILQMA 228 >gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716] Length = 377 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D + V+HGN GEDG VQ + LL+ PY SGI +SA+S DK +K++++ G+ + Sbjct: 96 DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 LV D + + +KP K GSS+GI + ++ + + ++++ + Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E + E+ ++G+ + ++ I VP+ D FY YE K+ + LP + Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278 D+ KE+ +A A++A+G +G++R DFL D V +L E N PG T +S++P+M Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331 Query: 279 AYAGYSFRELLLWMVE 294 +G S+ EL+ +++ Sbjct: 332 NISGISYSELIDRLIQ 347 >gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480] Length = 342 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 VIEKGGKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ ++PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101] Length = 343 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA+ MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] Length = 397 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 131/264 (49%), Gaps = 25/264 (9%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+A HG +GEDG +Q +LE+ IPYT G+L SA+ MDK+ K V + G+PV Sbjct: 104 PDVAILATHGTYGEDGCLQGLLEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNY 163 Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 I ++R + + P +KP GSS+GI + + + ++ ++ Sbjct: 164 IWIHRDEWHEHPDEVADRVERELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAAGYD 223 Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST----- 212 +LLIEQ V E+ C V+ D + + E V F SYE KY N T Sbjct: 224 R--RLLIEQGVVSPREINCSVLADGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTG 281 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +PA +P + + VQ LA A +AI RG++R DFL P ++ EIN PG Sbjct: 282 RRIPADLPDGVTEAVQELARRAFRAIQARGVARVDFLLSP-DGSIYVNEINTIPGSLSFY 340 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++ +G SF +LL ++EDA Sbjct: 341 LWEP----SGVSFPDLLDKLIEDA 360 >gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842] gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1] gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3] Length = 342 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055] Length = 342 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 332 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51 +A++ GG SSE +VS+ SG+ S + + + +DV D V L L P Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 GV V SIL+ R + + + P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211 ++ ++++IE ++DG+E++ GV V TE+ V ++F+ Y KY+ Sbjct: 188 ---AFMESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEV-VTSNEFFDYNAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268 + PA++ + V + + GI R D++ V LEIN PGM Sbjct: 243 QEITPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +E+L +VE+ Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] Length = 359 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVC- 108 D+ F VLHG GEDG+ Q +LE +PY G+L+SAL DK + ++V++ G+ P C Sbjct: 96 DVVFPVLHGQGGEDGVTQGLLESCRLPYVGCGVLSSALCTDKDAAHRIVAAAGIRSPRCE 155 Query: 109 ---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P R + P +KP +GGSS G+ ++ + LD ++ + ++ Sbjct: 156 VVHPGDGATRIA-EVAAACGYPLFVKPARGGSSYGVSKVEGPEQ--LDEALGLAFGYDEK 212 Query: 166 LLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFY------SYELKYSSLNSTHV 214 + +E+ + G E+ C +MG A+ + V E V F+ S S+ NS+ Sbjct: 213 VAVEEAIVGTEVGCAIMGGAAGELAMGLVDETVVSDGGFFHIHQDHSEGADASTRNSSTR 272 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA +P ++ + V+ +A+GC G++R D LF +V + E+N PG+T S F Sbjct: 273 CPALLPPEVMERVRETGTAVWRALGCSGLARVD-LFVTERGEVVFNEVNTMPGLTSYSRF 331 Query: 275 PEMAAYAGYSFRELLLWMVEDAS 297 P M A AG E+L +V A+ Sbjct: 332 PAMMAAAGADMGEVLERLVRSAA 354 >gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245] gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 356 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 20/256 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 +AF LHG GEDG +Q + E L +PY +G+L+SA MDK+ SKQ+ +P P Sbjct: 91 IAFPALHGPHGEDGKIQGLFESLNVPYVGAGVLSSAAGMDKIISKQLFQQAQIPQVPFTA 150 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWN 161 + + D + S P +KP GSS+GI + +L+Q+ ++N Sbjct: 151 LTHYEWDQERAKSLTRIEGELVYPIFVKPANLGSSVGISCANDRE----ELIQAIELAFN 206 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + ++++EQ V+ E+ V+G+ +++ + E+ KS FY+YE KY + +PA Sbjct: 207 YDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEVVKSKS-FYNYEEKYINNTVELAIPAD 265 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P +I +++ A A+ AI G++R DF F + ++ E+N PG T S++P + Sbjct: 266 LPGEIMDKIRAYAAKAYAAIDSSGLTRVDF-FVTHNMDIYINEVNTMPGFTQWSMYPSLW 324 Query: 279 AYAGYSFRELLLWMVE 294 G + +LL +++ Sbjct: 325 EATGIPYDQLLERLIQ 340 >gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110] gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110] Length = 376 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF +LHG GEDG VQ LEL ++ + S + SA++MDK SK+++ G+PV P + Sbjct: 110 DVAFPILHGPNGEDGTVQGALELADVSFVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFL 169 Query: 112 LVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + L +P +KP GSS+G+ + ++ + ++ ++ Sbjct: 170 TTTASSRIEYAAAVAALGTPDLFVKPANLGSSVGVSRARSEEEFAASCALAFRYDR--KI 227 Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTE------IAVPKSDFYSYELKYSSLNSTHV-LPAK 218 L+EQ ++G E+ C V+ +++ D+ + + FYSY+ KY + + +PA Sbjct: 228 LVEQALNGAREIECSVLEESTGDIRASGLGEIVRASEHGFYSYQAKYIDADGAALHIPAD 287 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +PL + +Q LA + C G++R DF +VF E N PG T S++P++ Sbjct: 288 LPLLQARRLQELAVEVFNVLCCEGMARVDFFVQ--GDEVFVNEANTLPGFTSSSMYPKLW 345 Query: 279 AYAGYSFRELLLWMVEDA 296 +G S +L+ ++ A Sbjct: 346 EASGLSQTDLMDKLIAHA 363 >gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] Length = 371 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 140/270 (51%), Gaps = 24/270 (8%) Query: 43 GLVLAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 G +L + D + F +LHG GEDG +Q LE+L++PY +G+L+SA +MDK+ K+V + Sbjct: 90 GEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLPYVGNGVLSSAAAMDKIIMKKVFA 149 Query: 102 SCGVPVCPSI---LVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 +P P++ LV+ D + ++ P +KP GSS+GI +++ Sbjct: 150 DAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVFVKPANLGSSVGITKATSKEALAA 209 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYEL 204 + ++ ++ +++IEQ V E+ V+G+ D +VP + FY Y+ Sbjct: 210 SINEAFQFDR--RIVIEQGVVAREIEIAVLGN---DTPVCSVPGEILPEDGLAPFYDYKT 264 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY+ + +PAKI + ++++ A A+ + G+ R+DF F ++ E+N Sbjct: 265 KYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLVRADF-FLTQDNQILLNEVNT 323 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG TP S++P + +G + L+ +VE Sbjct: 324 MPGFTPYSMYPLLWNESGIPYAALIERLVE 353 >gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 304 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 21/302 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLA----- 54 +A++ GG SSEREVSL + +A + +LE +SQI + ++ L+ DLA Sbjct: 5 IAIITGGDSSEREVSLQTSQAVSQSLE-----ISQIRHEIFTISDYRELLRLDLAKFTRV 59 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG FGE+G+ QA LE IPY SA+ M+K+ +K + G+ V + Sbjct: 60 FLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSR 119 Query: 115 R----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 R + P ++KP + G S G+ +++ ++ D + +++ H +L+E+ Sbjct: 120 RGDDLCVEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG-VLVEE 178 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G EL+ A+L + +A +S+F+SYE K+ S +T L + ++++ Sbjct: 179 FISGPELSVCYFNKATLPIYSLAF-ESEFFSYEAKFISSKTTATL-TTLDRTTHQQLNNY 236 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 F +A+ R+DF+ + + + +E+N PG+T S+FP+ G F +L+L Sbjct: 237 CFAIAEALELDYF-RADFIIH--NTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVL 293 Query: 291 WM 292 + Sbjct: 294 LL 295 >gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S] gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] Length = 370 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI + + +D + + ++ + Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL-VDAM-TEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 346 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 14/250 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 ++ D+ VLHG GEDG +Q +LEL IPY I +SA+ MDK + VV + G+ Sbjct: 89 IRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGI-AT 147 Query: 109 PSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 P+ + T+D+ P +V KP + GSS G+ + +++ + + + ++ ++ Sbjct: 148 PNFWTVAADETVDAARFTYPVFV-KPARSGSSFGVTKVSREEEMSSAVETARQYDS--KV 204 Query: 167 LIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKI 219 LIE+ V G E+ C ++G + +V IA+ F ++ + S NS ++PA I Sbjct: 205 LIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADI 264 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P VQ A ++ +GCRGI+R D +F +V E+N PG+T S +P M A Sbjct: 265 PEASRLRVQEEAKAVYRVLGCRGIARVD-MFLKEDGEVVLNEVNTLPGLTSYSRYPRMMA 323 Query: 280 YAGYSFRELL 289 AG E++ Sbjct: 324 AAGLPMSEVI 333 >gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e] gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561] gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] Length = 370 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI + + +D + + ++ + Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL-VDAM-TEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis] gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGPEE--LNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] Length = 370 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988] Length = 365 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] Length = 370 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+ P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIQQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 P ++ +I ++++ A A + G+ R+DF ++F E+N PG TP S++P Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G + L+ +V+ Sbjct: 334 LLWQETGLPYGALIERLVD 352 >gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] Length = 362 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 46/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------LVLAHLKPD---- 52 +L GG S+E EVSL S + +A+ ++V + + + L A PD Sbjct: 5 LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTLAL 64 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F +LHG GEDG +Q LE + +PY +G+L SA MD Sbjct: 65 TNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143 K+ +K ++ + G+P P +L N + + + + P +KP GSS+GI Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 K + L ++ + + ++EQ ++ E+ V+G+ + T EI V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY +PA+IP + + Q A A+ +G G+SR DF F ++F Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] Length = 351 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F +LHG GEDG +Q LE + +PY +G+L SA MDK+ +K ++ + G+P P Sbjct: 85 IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVP 144 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N + + + + P IKP GSS+GI K + L ++ + Sbjct: 145 VLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI--TKAENREELQNALQEAYRYD 202 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T EI V FY Y KY +PA+IP Sbjct: 203 TRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFYDYNSKYLDNKIEMQIPAQIP 261 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + + Q A A+ +G G+SR DF F ++F E+N PG T S++P + Sbjct: 262 EETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEK 320 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 321 TGLPYGDLIEELIQ 334 >gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] Length = 358 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 46/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------LVLAHLKPD---- 52 +L GG S+E EVSL S + +A+ ++V + + + L A PD Sbjct: 5 LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTLAL 64 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F +LHG GEDG +Q LE + +PY +G+L SA MD Sbjct: 65 TNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143 K+ +K ++ + G+P P +L N + + + + P +KP GSS+GI Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 K + L ++ + + ++EQ ++ E+ V+G+ + T EI V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY +PA+IP + + Q A A+ +G G+SR DF F ++F Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 358 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE------------------------------DAG 30 +AVL GG S+E +VS+ S +ALE +G Sbjct: 10 IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69 Query: 31 FKVSQIDVDRSVGLVL-AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++ + R L + AH P D+ F VLHG GEDG VQ ++ +P G Sbjct: 70 TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE----IA 193 G+ + Q L Q ++ H LL E++V G E+ V+ D L V+ + Sbjct: 190 GVAKVHASQEFAAALEQ--AFRHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247 Query: 194 VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 FY+Y KY N + +PA +P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLTS 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R V E+N PG T +S++ + A +G S+ E++ +V Sbjct: 308 DMRFVIN-ELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347 >gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101] Length = 364 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 15/250 (6%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114 VLHG GEDG +Q + L+++P+ SG+L SA+ MDK K ++ G+P P V+ Sbjct: 101 VLHGPNGEDGTIQGLFSLMQVPFVGSGVLGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQ 160 Query: 115 RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 D Q L+ P IKP GSS+GI + L ++S H +L+ Sbjct: 161 ELEADPQALLDRLEQQLGYPCFIKPANLGSSVGISKATNRSELLAGLELAAS--HDPRLV 218 Query: 168 IEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 +EQ +D EL C V+G S+ + EI +D+Y Y+ KYS S V+PA++ I Sbjct: 219 VEQGIDARELECAVLGGRSMQASVLGEICF-DADWYDYDTKYSDGKSHTVIPAEVSSAIS 277 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A A +A+ G++R DF D S ++ EIN PG T S++P + +G Sbjct: 278 DRARSMAIAACRAVAAEGLARVDFFLDRSSGDLWLNEINTLPGFTSQSMYPMLWEASGLP 337 Query: 285 FRELLLWMVE 294 L+ +V+ Sbjct: 338 LDALVHQLVQ 347 >gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis] gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1] gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392] gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661] gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis] Length = 342 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191] gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191] Length = 353 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 17/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + EL+E PY G++ASA+ MDK SK + + GVP P I Sbjct: 85 DVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGMDKEVSKVLAAYAGVPTLPYI 144 Query: 112 LVNR-------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + F + L P +V KP+ GSS+GI +K++ L+ + + Sbjct: 145 TFKKGDSVTKDFKAKTAKLGYPVFV-KPVNLGSSIGITKVKEEAF--LEKAIEFALKFDN 201 Query: 165 QLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAK 218 +LIE+ V E+ C V G+ S E+ +F+ Y KY N V +PA Sbjct: 202 DILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFFDYHSKYIDPNGCTVKVPAS 261 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + K +Q+ + + + G +R DFL ++++ EIN PGM+ S+FP++ Sbjct: 262 VSEEEDKLMQKYSRMIFKVFKACGFARVDFLLGK-DGQIYFSEINTLPGMSNASLFPQLW 320 Query: 279 AYAGYSFRELL 289 AG + ++L Sbjct: 321 RAAGKKYEDVL 331 >gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] Length = 331 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------VGLVLAHLKPDL 53 +A++ GG SSE +VSL S + S + + V +DV + G +A K D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67 Query: 54 AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +F + +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155 GV V S+L+ R + I P +KP GSS G+ +K DQ P Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAP---A 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D+++IE +++G+E++ G+ TE+ V K++F+ Y+ KY+ Sbjct: 185 LRKAFMESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEV-VTKNEFFDYDAKYNG-QV 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268 + PA++ + +V + + GI R D++ + V LEIN PGM Sbjct: 243 QEITPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L +VE+ Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 10/250 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG FGEDG +Q +LE+ IPY + +S + +DK + VV G+ Sbjct: 92 DVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFH 151 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +V ++ P +KP + GSS G+ + + +P L ++ ++ ++LIE+ Sbjct: 152 IVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDA--KILIEEA 209 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK---YSSLNSTHVLPAKIPLDIY 224 V G E+ C ++GD + +V +A+ F ++ K S NS+ ++PA IP Sbjct: 210 VIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASR 269 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A + ++A+GC G++R D LF V E+N PG+T S +P M AG S Sbjct: 270 DLVQETAKVIYRALGCSGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLS 328 Query: 285 FRELLLWMVE 294 +++ +V+ Sbjct: 329 LGDVIDRLVK 338 >gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 323 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 145/310 (46%), Gaps = 22/310 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------DVDRSVGLVLAHLK 50 +AV+ GG S E EVSL+S + AL D + V + +V R VGL A Sbjct: 8 VAVVGGGQSCEHEVSLASAASVVGALTDR-YDVVPLTITRDGTWCDEVGRPVGLARAVQT 66 Query: 51 PDLAFNVL---HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 V+ HG GEDG + A+ EL +PY SG+ A AL+MDK +K V + GV Sbjct: 67 LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 P + + ++ P V+KP+ GSS G+ +++ + L ++ ++L Sbjct: 127 APG-RLLTAATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPAL--DAALRLDGRVL 183 Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +E V+G E+ V+ GD + + V + + KY V PA +P + Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYGGTADLRV-PADVPEADAQ 242 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ A A+GC G++R DF + E+N PG+T S P M A AG S+ Sbjct: 243 ALRDAAVRVFDALGCAGVARVDFFL--TADGPVLNEVNTTPGLTEHSQVPRMFAAAGLSY 300 Query: 286 RELLLWMVED 295 +LL +V D Sbjct: 301 PDLLDRLVRD 310 >gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277] gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC 33277] Length = 330 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/326 (26%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV+ GG S E VSL S S L F + ++R Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSI-LVNRFTM----DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDL 154 S G+ + S+ L R T D + P +KP GGSS+ V++ Q +P Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLP--- 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLN 210 +++ G++++IE+ + G E+TCG +L VTE+ V ++F+ ++ KY+ Sbjct: 183 AIGQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYNGA- 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA+I + + +Q + ++ + RGI R D++ + LE+N PGMTP Sbjct: 241 VEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTL-LEVNTTPGMTP 299 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ A +E+L ++ D Sbjct: 300 TSFIPQQVRAAEMDMKEVLCTIIRDG 325 >gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] Length = 330 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 50/334 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV---------------DRSVGLVL 46 +L GG SSE EVSL S S LE F V ++++ D + G + Sbjct: 8 LLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGTLN 67 Query: 47 A---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P I ++ + + L + +K + GSS+G + + L LQ+ Sbjct: 128 GIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTE-----LSQLQA 182 Query: 158 ---SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210 +++ + DQ+L+EQ V EL D L +T EI P+ FYSYE KYS+ Sbjct: 183 ALDNAFGYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYST-- 240 Query: 211 STHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 +H + D+ E ++ + + R +SR DF P S +++ E+N P Sbjct: 241 ESHSTTKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTP-SGEIYLNEVNTFP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GMTP+S+FP+M G+SF L A+C++ Sbjct: 300 GMTPISMFPKMLENNGHSFAAFL------ANCVK 327 >gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 315 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 21/297 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AVL GG+S ER++SL SG A L+ G V +D+D R++G L PD+ + ++H Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------ 113 G GEDG +Q +L L +PY + + K +K V + GV + P L Sbjct: 67 GGPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGV-ITPDSLTLPHSYF 125 Query: 114 ------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 T+ + HL P V+KP +GGS LG+ + ++ +++ ++ L Sbjct: 126 SQLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERAL 182 Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 IE+YV G EL V+ G+ + + V Y ++ +Y+ S + +PA++ + + Sbjct: 183 IERYVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIE 242 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 V+ A H +G +SR+D + D F +++NV PGMT S+ P A G Sbjct: 243 MVKSTAVTVHSTLGLGNLSRTDLILDEEGTPWF-IDVNVIPGMTETSLLPIAAKAEG 298 >gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 364 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 14/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG +GEDG +Q +LE+ ++PY S +L+SA SMDK K+++ + G+PV + Sbjct: 104 DVVFPVLHGAYGEDGTIQGLLEMADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYV 163 Query: 112 LVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R + + + P +KP + GSSLGI + LD +++ ++L+ Sbjct: 164 VLKRDQTLSEAEKQRLGLPVFVKPSRAGSSLGISKVTDWDD--LDKAIATARAVDPKVLV 221 Query: 169 EQYVDGI-ELTCGVM---GDASLDVT---EIAVPKSD-FYSYELKYSSLNSTHVLPAKIP 220 E G+ EL CGV+ + D T E+ + ++ ++ +E KY + S + L +P Sbjct: 222 EAAFTGVRELECGVLEREDGGAPDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLP 281 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++ LA + C ++R DF F V+ EIN PG+TP S P A Sbjct: 282 EGTAERIRELAARVFTVMDCSDLARVDF-FLASDGTVYVNEINTMPGLTPGSGVPVAWAN 340 Query: 281 AGYSFRELLLWMVE 294 AG + EL+ +V Sbjct: 341 AGVDYPELVARLVR 354 >gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14] gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14] Length = 331 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 154/330 (46%), Gaps = 43/330 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + V +D+ D Sbjct: 8 IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +K D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152 GV V S+L+ R + I+ P +KP GSS G+ +K DQ P + Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208 ++ S + ++E ++DGIE++ G+ A V TE+ V ++F+ Y KY+ Sbjct: 188 AFMECS------EAMVEGFMDGIEISQGIYKTADKTVVFPATEV-VTNNEFFDYNAKYNG 240 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQ 265 + PA++ + ++V + + GI R D++ + K+ LEIN Sbjct: 241 -QVKEITPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTT 299 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L +VE+ Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium] gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46] gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46] Length = 382 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 158/341 (46%), Gaps = 54/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47 +A+L GG S+E EVS+ S A AL+ + V+ I +D+ G + Sbjct: 5 VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64 Query: 48 HLKPDLAF-------------------------NVLHGNFGEDGLVQAILELLEIPYTHS 82 P +AF VLHG GEDG VQ L+L +PY S Sbjct: 65 REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGS 137 G++ SA +MDK +K+++ G+P+ P ++ +T + L S +KP GS Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT-----E 191 S+G+ + D + ++ + +++LIE+ V E+ V+ A +V E Sbjct: 185 SVGVSRVADAGQ--FDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVRVSPPGE 242 Query: 192 IAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 IA + FY Y+ KY + +L PA + + + + LA A +A+ C G++R D Sbjct: 243 IAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDLF 302 Query: 250 FDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DP + +F E+N PG T +S++P++ AG + L+ Sbjct: 303 LDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALM 343 >gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus JCSC1435] gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435] Length = 356 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 21/260 (8%) Query: 50 KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 KP D F +LHG GEDG +Q + E+L++PY +G+LA++ SMDK+ KQ+ G+P Sbjct: 86 KPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQL 145 Query: 109 PSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P I R + + ++ P +KP GSS+GI + + + ++ Sbjct: 146 PYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSVGISKCNNEDELKSGIEEAFQ 205 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHV 214 ++ +L+IEQ ++ E+ V+G+ D E P FY Y+ KY + Sbjct: 206 FDR--KLVIEQGINAREVEVAVLGN---DYPETTWPGEVIKDVAFYDYKSKYKDGKISLQ 260 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA++ ++ ++ +A A +A C G+ R+DF F ++F E N PG T S++ Sbjct: 261 IPAELDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIFINETNAMPGFTAFSMY 319 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P + G S+ +L+ +++ Sbjct: 320 PSLWENMGLSYSDLITKLID 339 >gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 364 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVL--AHLKPD---- 52 +L GG S+E EVSL S + +A+ ++V + + + G +L A PD Sbjct: 5 LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTLAL 64 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F +LHG GEDG +Q LE + +PY +G+L SA MD Sbjct: 65 TNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143 K+ +K ++ + G+P P +L N + + + + P +KP GSS+GI Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200 K + L ++ + + ++EQ ++ E+ V+G+ + T EI V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY +PA+IP + + Q A A+ +G G+SR DF F ++F Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus] Length = 249 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 16 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 75 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 76 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 133 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 134 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 193 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +Q A ++A+GCRG++R D R V E+N PG T S +P M A A Sbjct: 194 GRIQETAKKIYKALGCRGLARVDMFLQDNGRIVLN-EVNTLPGFTSYSRYPRMMAAA 249 >gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87] Length = 347 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/334 (26%), Positives = 150/334 (44%), Gaps = 50/334 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----------AHLK 50 + V+ GG SSE VSL S + + + + ++ I +D++ + H Sbjct: 4 LGVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWI 63 Query: 51 P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 P D F VLHG GEDG VQ +LEL+ I Y +++ Sbjct: 64 PQATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMS 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLG 140 SA+SMDK + +P + + F M Q IS P+++KP GSS G Sbjct: 124 SAISMDKEIMHILCDEANIPCADYVCLKANEENPSFEM-IQEKISLPWIVKPCNAGSSYG 182 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVP 195 + ++ + + ++ ++L+E+ ++G E+ C VMG+ S D +I+ Sbjct: 183 VHKVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQIS-- 240 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + +E KY + + PA+I + + + + LA ++A+ C G++R D P + Sbjct: 241 -GGIFDFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTP-QK 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +V E+N PG T S +P M AG F +L+ Sbjct: 299 EVILNELNTIPGFTATSRYPSMMKEAGIEFGDLI 332 >gi|119717708|ref|YP_924673.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119538369|gb|ABL82986.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 311 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 25/306 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---H 48 +AV+ GG S E +VSL+S A A+ L+ + V ++ D DR VGL A Sbjct: 5 VAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAAVEVL 64 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 + D+ F V HG GEDG + A+ EL +PY SG+ A AL+MDK +K V ++ G+ Sbjct: 65 RRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALGIATA 124 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 LV T +Q + P V+KP+ GSS+G+ + + S+P L + + + D+ L+ Sbjct: 125 AGRLVTAATA-TQETWTGPVVVKPVAAGSSIGVAFVSEPASLPPALATALALD--DRALV 181 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDI 223 E+ V G E+ V+ A D +A P + ++ KY V PA + Sbjct: 182 EELVTGREIDVAVLRRA--DGAVVASPPLEIVADGLFDFDAKYGGRADFRV-PAVLDEVD 238 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 K ++ A + A+GC G++R DF E+N PGMT S P M A AG Sbjct: 239 AKALEGAAVATYDALGCSGVARVDFFL--TDTGPVLNEVNTVPGMTEHSQVPRMFAAAGL 296 Query: 284 SFRELL 289 + +LL Sbjct: 297 PYPDLL 302 >gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] Length = 352 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLV--- 45 +A++ GG SSE V+L S +AL G +V + +DR G V Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + L S +KP GSS+G Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197 V + ++ + + ++L+E V G E+ CGV+ G + V EI + Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 198 D-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + T + +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ EIN PG T S++P+M +GY +L+ +VE Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341 >gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 329 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/329 (31%), Positives = 156/329 (47%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV--------------DRSVGLVLA 47 +L GG S+E EVSL S S LE F+V ++++ D + G + + Sbjct: 8 LLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTLNS 67 Query: 48 HL---KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 EVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDALS 127 Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157 +P P I + N+ D + +K + GSS+G V +KDQ L + Sbjct: 128 IPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQ---LQKAIN 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211 ++ + DQ+L+E+ V EL L VT EI P+ FYSYE KYS S ++ Sbjct: 185 DAFGYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHST 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + D +Q+ + + + R +SR DF P V+ E+N PGMTP+ Sbjct: 245 TDVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTP-EGNVYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M ++G F E L A C++ Sbjct: 304 SMFPKMVEHSGLKFSEFL------ADCVK 326 >gi|67479916|gb|AAY67966.1| truncated D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 305 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 52/295 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S ER+VSLSSG A ALE+ G + +D Sbjct: 3 IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFEAAYSIQKQEENP 62 Query: 38 ----VDRS-----------------VGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILEL 74 VD + +G + L D F LHG GE+G +QA +L Sbjct: 63 YDYFVDENEPDIEKLIQKNSSQKNVMGKNVVELCRDADFCFIALHGGIGENGKLQAFFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I Y+ S S L+MDK +KQ++ +P P + + + S P V+KP+ Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPT-PKWQI--WEQGQEVYYSSPCVVKPID 179 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ +++ + L ++ +N +++IEQ ++G E + GV+GD L EI + Sbjct: 180 NGSSIGVEIVENKEQFSKALKKAEKYN--SKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P+ FY+YE KY + + PA I D+ + + L ++ +G SR D++ Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYI 291 >gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327 Query: 285 FRELL 289 ++ Sbjct: 328 LPAMI 332 >gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei ATCC 334] gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334] gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W] gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II] Length = 357 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 53/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLV-------- 45 + VL GG S+ER VS+SSG +AL G + + ID+ ++V V Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62 Query: 46 -------------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 + L+PD + F LHG GE+G VQA+ ++ Sbjct: 63 DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R Q + P V+KP Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G +I + + L + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIIHNQEELESGL--EDVFRFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V +S +Y ++ K+ + + + P K + D+++ ++ +A +G + R DF + Sbjct: 241 V-RSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFAN- 298 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V+ +E N PGMTP+S+ P+ A G + +L++ +V Sbjct: 299 -EKGVWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 >gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)] Length = 384 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 63/350 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A+++GG S E VS++SG + + ++ F V I +D Sbjct: 14 VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73 Query: 40 ---------------RSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + LV L + D+ F+++HG+ GEDG +Q + E+ +PY Sbjct: 74 ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP------PYVIKP 132 + + SA+ M+K+ K ++++ +P +V+ + D+ LI P +KP Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188 GSS+GI + D LQS+ + Q+L+E+ + EL V+G+ + + Sbjct: 194 ANTGSSVGISKVDS-----YDDLQSAIEVALKFDPQVLVEEGITPARELEVAVLGNHNPE 248 Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 V+ I P FY Y KY LN T L PA + ++ +++ +A ++ +G +G+S Sbjct: 249 VSCIGEINPPDGFYDYASKY--LNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLS 306 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R DFL D + + + +E+N PG T +S++P++ +G + L+ ++E Sbjct: 307 RVDFLLDQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIE 356 >gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 352 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLV--- 45 +A++ GG SSE V+L S +AL G +V + +DR G V Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + L S +KP GSS+G Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197 V + ++ + + ++L+E V G E+ CGV+ G + V EI + Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 198 D-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + T + +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ EIN PG T S++P+M +GY +L+ +VE Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341 >gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 346 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 47/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-----------------------DAGFKVSQ-- 35 + ++ GG E VS+ S + A L+ D G++ ++ Sbjct: 6 VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65 Query: 36 ---IDVDRSVG--LVLAH-----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + DR+V LVL + ++ DL F VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVI 144 SAL MDK + V G+ P + D + P P V+KP + GSS G+ + Sbjct: 126 TSALCMDKSLTYLVAQHAGI-TTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKV 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFY 200 ++ + + ++ + ++LIE+ + G E+ C ++G+ + +V +I V + F Sbjct: 185 THEEELQTAI--DTARQYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFR 242 Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S NST +PA I L+ VQ A ++A+G +G++R DF V Sbjct: 243 IHQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFLKEDGTLV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+ PGMT S +P M A AG +L+ MV Sbjct: 303 LN-EVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337 >gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] Length = 330 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 156/331 (47%), Gaps = 44/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV---------------DRSVGLVL 46 ++ GG SSE EVSL S S LE + F V ++++ D + G + Sbjct: 8 LICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGTLN 67 Query: 47 ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 A +K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV--------IKPLKGGSSLGIIVIKKDQSIPLDLL 155 G+P P + ++ + D+Q L + +K + GSS+G + I L Sbjct: 128 GIPNTPYVFLS--SNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209 ++++ DQ+LIEQ V EL + L V+ EI P+ FY+YE KY SS Sbjct: 185 -DDAFSYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++T V + + ++ + + R +SR DF P ++ E+N PGMT Sbjct: 244 STTDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTP-EGDIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P+S+FP+M + G+SF E L A C+R Sbjct: 303 PISMFPKMLEHNGHSFSEFL------ADCVR 327 >gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] Length = 344 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 23/262 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---------QVV-- 100 ++ + VLHG GEDG VQ + L+ P+ +G+L SA+ MDK+ K QV Sbjct: 87 EIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLGSAMGMDKLAMKAAFAAAGLAQVAYV 146 Query: 101 ----SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 SS + L+ R + + P +KP GSS+GI ++ + L Sbjct: 147 GLDASSLNNAATRATLLERIETE----LGYPCFVKPANLGSSVGISKVRNRAELERGLAV 202 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHV 214 ++ +H +L++EQ V EL C V+G L + + + +D+Y Y+ KYS S + Sbjct: 203 AAELDH--RLVVEQGVQARELECAVLGVRQLKASVVGEIRFDADWYDYKTKYSDGLSHTL 260 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +PA I +VQ +A A + +G G +R DF +D +++ E+N PG T S++ Sbjct: 261 IPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDATQERLWINEVNTLPGFTSQSMY 320 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P + +G +L+ +VE A Sbjct: 321 PMLWEASGLPLEDLVAQLVESA 342 >gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 356 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 14/251 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SIL 112 F +LHG GEDG +Q + E+L++PY +G+LA++ +MDK+ KQ+ + G+P P S L Sbjct: 92 FPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSTMDKLVMKQLFAHRGLPQLPYVSFL 151 Query: 113 VNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + + +++ P +KP GSS+GI ++ + + ++ ++ + Sbjct: 152 RSEYEKYQSNILKLVKDKLEFPVFVKPANLGSSVGISKCNNEEELKSGIEEAFQFDR--K 209 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDI 223 L+IEQ ++ E+ V+G+ + T+ D FY Y+ KY +PA++ ++ Sbjct: 210 LVIEQGIEAREIEVAVLGNDYPETTQPGEVVKDVAFYDYKSKYLDGKVQLSIPAELDSEV 269 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ +A A +A C G+ R+DF F ++F E N PG T S++P + G Sbjct: 270 QTTLRNMAAEAFKATDCSGLLRADF-FVTEDNQIFINETNAMPGFTQYSMYPSLWENMGL 328 Query: 284 SFRELLLWMVE 294 S+ +L+ ++E Sbjct: 329 SYADLITKLIE 339 >gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium] Length = 343 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 27/272 (9%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++D G+++ +IDV F+VLHG GEDG +Q + EL IPY I Sbjct: 81 MQDKGYQIQRIDV---------------VFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++ + + + P +KP + GSS G V K Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYG--VNK 183 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFY 200 + + LD + + ++LIEQ V G E+ C V+G+ S D V +I + F Sbjct: 184 VNSADELDSAIDLARQYDSKILIEQGVLGYEVGCAVLGN-SFDLIVGEVDQIRLQHGIFR 242 Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E + S N+T +PA++ + + ++ A ++A+GCRG+SR D R V Sbjct: 243 IHQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFLQDNGRIV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG T S +P M AG + EL+ Sbjct: 303 LN-EVNTMPGFTSYSRYPRMMVSAGITIPELI 333 >gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] Length = 342 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S + M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYTRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 356 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 16/252 (6%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SIL 112 F +LHG GEDG +Q + E+L+IPY +G+LA++ SMDK+ KQ+ + G+P P S L Sbjct: 92 FPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFAHRGLPQLPYVSFL 151 Query: 113 VNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + + ++ + P +KP GSS+GI ++ + + ++ ++ + Sbjct: 152 RSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSVGISKCNNEEELKNGIEEAFQFDR--K 209 Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 L+IEQ ++ E+ V+G+ + T E+ + + FY Y+ KY +PA + + Sbjct: 210 LVIEQGIEAREIEVAVLGNDYPETTWPGEV-IKEVAFYDYKAKYKDGKIKLDIPADLDEE 268 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + ++ +A A +A C G+ R+DF F ++F E N PG T S++P + G Sbjct: 269 VQMTLRNMAVEAFKATDCAGLLRADF-FVTDDNQIFINETNAMPGFTAFSMYPSLWENMG 327 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 328 VSYSDLIKKLIE 339 >gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] Length = 356 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 20/259 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D F +LHG GEDG +Q + E+L++PY +G+LA++ SMDK+ KQ+ G+P P Sbjct: 87 KYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLP 146 Query: 110 --SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 S L + + ++I + P +KP+ GSS+GI + + + ++ + Sbjct: 147 YISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSVGISKCNNEDELKKGIEEAFQF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL 215 + +L+IEQ + E+ V+G+ D E P FY Y+ KY + + Sbjct: 207 DR--KLVIEQGIIAREVEVAVLGN---DYPETTWPGEVIKDVQFYDYKSKYKDGKISLQI 261 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + ++ ++ +A A +A C G+ R+DF F +++ E N PG T S++P Sbjct: 262 PADLDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYP 320 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G S+ +L+ +++ Sbjct: 321 NLWENMGLSYSDLITKLID 339 >gi|310658242|ref|YP_003935963.1| d-alanine-d-alanine ligase a [Clostridium sticklandii DSM 519] gi|308825020|emb|CBH21058.1| D-alanine-D-alanine ligase A [Clostridium sticklandii] Length = 306 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 15/215 (6%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 V+A L +L F VLHG +GEDG +Q +LEL IPY +LASA MDK +K++ S G Sbjct: 87 VIAEL--ELVFPVLHGPYGEDGKLQGLLELSGIPYVGCSVLASANGMDKDMAKKIFSYEG 144 Query: 105 VPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + P I + +Q ++S P IKP GSS+GI K Q + L + ++ Sbjct: 145 INQVPHITCYSYEQ-TQEIVSRAEANLGYPCFIKPANMGSSVGISKAKDKQQLVLAMQKA 203 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHV 214 ++H +++IE+ V+ E+ V+G+ + V +P +FY Y+ KY S S + Sbjct: 204 FEYDH--KIIIEKGVNAREIEVAVLGNCDNIRISVAGEIIPSDEFYDYDAKYKSNASQLI 261 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PA + + +++Q +A+ A++ + G+ R F Sbjct: 262 IPADLSFEADRQIQDMAYRAYKGLNAEGLCRIRFF 296 >gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 356 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 20/259 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D F +LHG GEDG +Q + E+L++PY +G+LA++ SMDK+ KQ+ G+P P Sbjct: 87 KYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLP 146 Query: 110 --SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 S L + + ++I + P +KP GSS+GI + + + ++ + Sbjct: 147 YISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSVGISKCNNEDELKKGIEEAFQF 206 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL 215 + +L+IEQ V E+ V+G+ D E P FY Y+ KY + + Sbjct: 207 DR--KLVIEQGVIAREVEVAVLGN---DYPETTWPGEVIKDVQFYDYKSKYKDGKISLQI 261 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++ ++ ++ +A A +A C G+ R+DF F +++ E N PG T S++P Sbjct: 262 PAELDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYP 320 Query: 276 EMAAYAGYSFRELLLWMVE 294 + G S+ +L+ +++ Sbjct: 321 SLWENMGLSYSDLITKLID 339 >gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] Length = 360 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VS+SSG +AL G + + ID Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 38 ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 +D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132 + YT SG LAS ++M+K+ SK+V+ G+ R + +H + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G + + + + + + + ++E++ G E + GV+ + EI Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V S +Y ++ K+ + + + P K + +++ ++ ++ +G + R DF + Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 --NKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta] Length = 342 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG + Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327 Query: 285 FRELL 289 L+ Sbjct: 328 LPALI 332 >gi|84310013|emb|CAI84704.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] Length = 225 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 123/210 (58%), Gaps = 14/210 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + V+HGN GEDG +Q + +LL+ PY SG+LASA S DK +KQ+++ + + Sbjct: 18 DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 77 Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +V NR M +L + IKP GSS+GI + +Q LD L + ++ + + Sbjct: 78 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 135 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E+ +D E+ C ++G+ + ++ I VPK+D FY Y K+ + T LP ++ Sbjct: 136 ILVEESIDNPCEVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 195 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 196 PADLTKRIQQMSLDAFKALGLKGMARVDFL 225 >gi|84310005|emb|CAI84700.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] gi|84310007|emb|CAI84701.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] gi|84310009|emb|CAI84702.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] gi|84310011|emb|CAI84703.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] gi|170293287|gb|ACB12692.1| D-alanine-D-alanine ligase [Lactobacillus plantarum] Length = 225 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 123/210 (58%), Gaps = 14/210 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ + V+HGN GEDG +Q + +LL+ PY SG+LASA S DK +KQ+++ + + Sbjct: 18 DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 77 Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +V NR M +L + IKP GSS+GI + +Q LD L + ++ + + Sbjct: 78 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 135 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219 +L+E+ +D E+ C ++G+ + ++ I VPK+D FY Y K+ + T LP ++ Sbjct: 136 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 195 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 196 PADLTKRIQQMSLDAFKALGLKGMARVDFL 225 >gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG] Length = 360 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VS+SSG +AL G + + ID Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 38 ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 +D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132 + YT SG LAS ++M+K+ SK+V+ G+ R + +H + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G + + + + + + + ++E++ G E + GV+ + EI Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V S +Y ++ K+ + + + P K + +++ ++ ++ +G + R DF + Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 --DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] Length = 346 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 10/249 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ VLHG GEDG +Q +LEL IPY I +SAL MDK + V SS G+ Sbjct: 92 DVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYLVASSAGIRTPSHW 151 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 V IS P +KP + G S G+ + + + + L ++++ + ++LIE+ Sbjct: 152 TVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVSRREEL-LSAVETAR-QYDSKVLIEEV 209 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ + V IA+ F ++ + S NS ++PA IP + Sbjct: 210 VVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRIHQEDQPETGSDNSVAIVPADIPEESR 269 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V A ++A+GCRG++R D +F +V E+N PGMT S +P M A A Sbjct: 270 SLVTEQAKALYRALGCRGLARVD-MFLREDGEVVLNEVNTFPGMTSYSRYPRMMAAADLP 328 Query: 285 FRELLLWMV 293 E++ +V Sbjct: 329 LTEVIDRLV 337 >gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 363 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F +LHG GEDG +Q LE + +PY +G++ SA MDK+ +K ++ + G+P P Sbjct: 95 IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSACGMDKIMTKYILQAAGIPQVPYVP 154 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L +++ + + + P +KP GSS+GI + + + L ++ + Sbjct: 155 VLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSVGISKAENREELQHAL--EEAYQYD 212 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + +IEQ ++ E+ ++G+ + T EI V FY Y KY +PA +P Sbjct: 213 TRAVIEQGIEAREIEVAILGNEDVRTTMAGEI-VKDVAFYDYNSKYIDNKIEMQIPASVP 271 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ + Q A A+ +G G+SR DF ++F E+N PG T S++P + Sbjct: 272 DEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTS-KNELFLNELNTMPGFTQFSMYPSLWEQ 330 Query: 281 AGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 331 TGLKYGDLIEELIQ 344 >gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] Length = 360 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 55/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER VS+SSG +AL G + + ID+ Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 39 -------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132 + YT SG LAS ++M+K+ SK+V+ G+ R + +H + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G + + + + + + + ++E++ G E + GV+ + EI Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V S +Y ++ K+ + + + P K + +++ ++ ++ +G + R DF + Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 --DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] Length = 398 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 134/265 (50%), Gaps = 28/265 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF V+HG EDG Q L+ + IP+ + ASA+ MDK +K V+ VPV + Sbjct: 106 DVAFPVVHGTNVEDGGFQGYLKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDAR 165 Query: 112 L--------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 L + D +++ P ++KP+ GSS+GI V K + L ++ + Sbjct: 166 LYTLSDYADMESMMNDIENVFGYPVIVKPVNLGSSVGISVAK--SRVELANSVDDAFRYA 223 Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSS----------L 209 ++L+E + + E+ C V+GD + + E + D SYE KY S Sbjct: 224 TKVLVEHAITNLREINCSVLGDENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMA 283 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + +PA++ + +EV+ LA + +A+GC G+SR DF+ D + K+++ EIN PG Sbjct: 284 SVSRRIPAELTPEKREEVRELAVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPGSL 343 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + G ++ELL M++ Sbjct: 344 AFYLWEPV----GVPYKELLDRMIQ 364 >gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 53/335 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41 + VL GG S+ER+VS+ SG SAL + DV+++ Sbjct: 3 IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62 Query: 42 VGLVLA---HL--------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 V + + H+ K D F LHG+ GEDG +QA+ +L+ I Sbjct: 63 VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135 YT +G L+SA++MDK +K + GVP + +R + + P V+K G Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ ++ + D + LD ++ + +++++E++V+G E T V+ + V +I Sbjct: 183 GSSIGVYIVDNQADYTKALD----GAFTYENEVVVEEFVEGTEYTVAVVDGKAYPVVQI- 237 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 VP FY YE KY PA I ++ + +Q A + A+ R DF+ Sbjct: 238 VPVQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVTK- 296 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 K++ LE N PGMTP S+ P+ AA G + L Sbjct: 297 DEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTL 331 >gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] Length = 344 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 12/247 (4%) Query: 52 DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D+AF VLHG G EDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPE 150 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIE Sbjct: 151 FQMIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIE 208 Query: 170 QYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222 Q + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 QAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 268 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 VQ A ++ +GCRG++R D LF + E+N PG T S +P M A AG Sbjct: 269 ERNRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAG 327 Query: 283 YSFRELL 289 + L+ Sbjct: 328 ITLPALI 334 >gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] Length = 364 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + +L GG S E EVSL S + + L+ + + + +D+ GL H DL Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKD-GLFYVHQYEDLLAYKDKL 65 Query: 54 -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F V+HG EDG +Q +LEL + Y +L+SA Sbjct: 66 PVVTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK +++V G+ L++ RF D P +KP GSS+ Sbjct: 126 IGMDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-------EI 192 GI K + + + + + +++L+E +V+G E+ V+ A + EI Sbjct: 186 GIHKAKSMDELVVAV--DDALRYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEI 243 Query: 193 AVPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V D FYSY KY N T +L PA + + E+++ A + C+G++R DF Sbjct: 244 RVHHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + +++ EIN PG T +S++P++ +G ++ +LL Sbjct: 304 NDKTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLL 342 >gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] Length = 424 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 47/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 24 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 83 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 84 MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 143 Query: 91 MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + + ++ P +KP GSS+GI Sbjct: 144 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 201 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L ++ + ++L+EQ V+ E+ G++G+A + E+ V FY Sbjct: 202 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEV-VKNVAFYD 260 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PAKI I ++ A A +AIG G+S DF + ++F E Sbjct: 261 YHAKYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNE 319 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +N PG T ++P + G + EL +E CL Sbjct: 320 LNTMPGFTQWFMYPLLWDNMGLGYPEL----IEKLVCL 353 >gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] Length = 356 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8] gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG] gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8] gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG] gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000] gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017] gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141] gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312] gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645] gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346] gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630] gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62] gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF] Length = 356 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF F ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDF-FLTSKNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] Length = 356 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] Length = 332 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/329 (28%), Positives = 156/329 (47%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASAL--------------EDAGFKVSQ-----IDVDRSVG 43 +L GG S+E EVSL S S L ++ G+K S+ +++D+++ Sbjct: 8 LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + + D A +HG GE G +Q++ EL +PY AS + +K+ SK + Sbjct: 68 VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + DS + +K GSS+G + + ++ + + Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAV--A 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211 S++ + +Q+L+E+ V EL + + VT EIA P+ FY+YE KYS S + Sbjct: 186 SAFGYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V P + + +++ A A + + +SR DF P V EIN PGMTP+ Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTP-EGDVLLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP++ + G++F E L SC+R Sbjct: 305 SMFPKLVEHNGHTFSEYL------ESCIR 327 >gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111] gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493] gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493] gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 373 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48 ++VL GG S+E E+S+ S K + L+ A + +S I +D VG + LAH Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAHSPD 66 Query: 49 ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77 KP D F ++HG GEDG +Q +LELL + Sbjct: 67 HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130 PY + + +SA+ M+K +K V+ + G+PV L R + Q L+ + + Sbjct: 127 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 K + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKAS 244 Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI +P D+YSY+ KY N +T + + K++Q++A A + + C G++R Sbjct: 245 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF P + KV EIN PG T +S++P+M +G LL ++E Sbjct: 304 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 350 >gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137] gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027] gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244] gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012] gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031] gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043] gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342] gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467] Length = 351 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 18/255 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 87 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 146 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 147 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 203 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 204 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 262 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 263 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 321 Query: 280 YAGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 322 NMGLKYSDLIEELIQ 336 >gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] Length = 372 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48 ++VL GG S+E E+S+ S K + L+ A + +S I +D VG + LAH Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAHSPD 65 Query: 49 ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77 KP D F ++HG GEDG +Q +LELL + Sbjct: 66 HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130 PY + + +SA+ M+K +K V+ + G+PV L R + Q L+ + + Sbjct: 126 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 K + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKAS 243 Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI +P D+YSY+ KY N +T + + K++Q++A A + + C G++R Sbjct: 244 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF P + KV EIN PG T +S++P+M +G LL ++E Sbjct: 303 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349 >gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 334 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 34/318 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFN----- 56 +L GG ++E E+SL S S LE + F V+++++ + + ++ N Sbjct: 8 LLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGTLQ 67 Query: 57 -------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 +HG GE G +QA LEL +PY G AS S +K+ SK + Sbjct: 68 INGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P I ++ + L +K + GSS+G ++++ + L+ L+ Sbjct: 128 GIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAEL-LNALE- 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213 ++++ DQ+LIEQ V EL L +T E+ P+ FYSYE KYS + T Sbjct: 186 GAFSYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSETQ 245 Query: 214 --VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V + D +++ A + + R +SR DF P +V+ E+N PGMTP+ Sbjct: 246 TVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELL 289 S+FP+M + ++F E + Sbjct: 305 SMFPKMLQHNEHNFAEFM 322 >gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 360 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 33/271 (12%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------- 102 D+ F LHG +GEDG +Q + EL IPY SG+LASA+SMDK+ +K + + Sbjct: 96 DVIFPALHGKYGEDGSIQGLFELSGIPYVGSGVLASAVSMDKLFTKVIAAQPLKKLGLRQ 155 Query: 103 --CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 C +PV + L +NR Q+ P +KP GSS G+ ++K + +P L Sbjct: 156 ARC-LPVDAAELGRMEEILNRVEKSFQY----PVFVKPANAGSSCGVSRVEKREELPDAL 210 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSDFYSYELKYSSL 209 ++ + +LL+E+ V G EL C ++ + + EI S FY Y+ KY++ Sbjct: 211 RAAAKVDR--KLLVEETVYGRELECALLRGPDMKIHASGLGEIRAAAS-FYDYDAKYNNP 267 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +S + ++ + + ++ A A+ G++R DF + EIN PG T Sbjct: 268 DSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDFFL--TEDGPVFNEINTLPGFT 325 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +S++P + G REL+ ++ D++C R Sbjct: 326 AISMYPMLWEAKGIGKRELIQRLI-DSACQR 355 >gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154] gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 372 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 69/353 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48 ++VL GG S+E E+S+ S K + L+ A + +S I +D VG + LAH Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDH-VGRWYLIDQPEMFLAHSPD 65 Query: 49 ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77 KP D F ++HG GEDG +Q +LELL + Sbjct: 66 HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--------- 128 PY + + +SA+ M+K +K V+ + G+PV V+ T+ + Y Sbjct: 126 PYVGANVQSSAVCMEKDLTKTVLRAGGIPV-----VDWHTLSPRDATEGVYQRLLDRWGT 180 Query: 129 ---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 +K + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ Sbjct: 181 SELFVKAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNG 238 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + EI +P D+YSY+ KY N +T + + K++Q++A A + + C Sbjct: 239 APKASLPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCS 297 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DF P + KV EIN PG T +S++P+M +G LL ++E Sbjct: 298 GMARVDFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349 >gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis] Length = 347 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL VLHG GEDG +Q +LE+ IPY + +SA+ MDK + V+ + G+P Sbjct: 93 DLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDVPSSAMCMDKSLTYSVIKAAGIPTPNFW 152 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +V T P +KP + GSS G+ + + + L ++ ++ ++LIE+ Sbjct: 153 IVTEDTDVDADAFDYPVFVKPARSGSSFGVSKVSGKEELAAALAEARQFDS--KVLIEEA 210 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224 V G E+ C ++G+ + + +A+ F ++ + S NS+ ++PA I + Sbjct: 211 VIGSEIGCSILGNDDELLAGECDRVALTHGFFKIHQEESPETGSENSSFIVPADISAESR 270 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++A+GCRG++R D LF V E+N PG+T S +P M A AG S Sbjct: 271 AVVQDTAKAIYRALGCRGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMAAAGLS 329 Query: 285 FRELL 289 +++ Sbjct: 330 LGDVI 334 >gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis] Length = 347 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL VLHG GEDG +Q +LE+ IPY + +SA+ MDK + V+ + G+P Sbjct: 93 DLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDVPSSAMCMDKSLTYSVIKAAGIPTPNFW 152 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +V T P +KP + GSS G+ + + + L ++ ++ ++LIE+ Sbjct: 153 IVTEDTDVDADAFDYPVFVKPARSGSSFGVSKVSGKEELAAALAEAREFDS--KVLIEEA 210 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224 V G E+ C ++G+ + + +A+ F ++ + S NS+ ++PA I + Sbjct: 211 VIGSEIGCSILGNDDELLAGECDRVALTHGFFKIHQEESPETGSENSSFIVPADISAESR 270 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 VQ A ++A+GCRG++R D LF V E+N PG+T S +P M A AG S Sbjct: 271 AVVQDTAKAIYRALGCRGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMAAAGLS 329 Query: 285 FRELL 289 +++ Sbjct: 330 LGDVI 334 >gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] Length = 358 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 159/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A+L GG S+E EVS+ S AL+ + + I V Sbjct: 10 VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69 Query: 40 -----------RSVGLVLAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSG 83 R V L DLA F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSL 139 I SA ++DK +K+++ G+P SI ++ + + + P IKP + GSS+ Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAV 194 G V K + + H ++LL E++V G E+ V+ D +L V+ EI Sbjct: 190 G--VSKVMTAADFKAAVQEGFKHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247 Query: 195 PKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FY+Y+ KY + + +PA++P ++ ++ LA A +A+GC G++R DF F Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDF-FLT 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V E+N PG T +S++ + A +G ++ E++ ++ Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347 >gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] Length = 348 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302] gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341] gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B] Length = 356 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] Length = 352 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 154/340 (45%), Gaps = 53/340 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE +++L S + L +K+ + VD+ Sbjct: 10 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69 Query: 41 -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88 S+ L LK N + HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 70 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVG-- 187 Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198 + K ++I +LL+ + + +++L+E+ + G E+ V+G+ L ++ +D Sbjct: 188 -VNKAENIE-ELLKFGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHT 245 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257 F Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D FL D K Sbjct: 246 FLDYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFLKD---NKF 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 + EIN PG TP S F + + F E+L ++E+ Sbjct: 303 YINEINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEEG 342 >gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A] Length = 351 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 18/255 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LASA +MDK+ +K ++ + G+P P + Sbjct: 87 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 146 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 147 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 203 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 204 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 262 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 263 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 321 Query: 280 YAGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 322 NMGLKYSDLIEELIQ 336 >gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1] Length = 341 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 44/298 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 24 LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 83 Query: 49 -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 84 MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 143 Query: 91 MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + + ++ P +KP GSS+GI Sbjct: 144 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 201 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201 K + L ++ + ++L+EQ V+ E+ G++G+A + T E+ V FY Sbjct: 202 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYD 260 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF--LFDPLSRKV 257 Y+ KY T +PAKI I ++ A A +AIG G+SR DF LF LS+K+ Sbjct: 261 YDAKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFPLFSLLSKKM 318 >gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] Length = 330 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 95/325 (29%), Positives = 154/325 (47%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVD----RSVGLVLAHL-------- 49 +L GG SSE EVS+ S S L+ F V ++++ + G LA+L Sbjct: 8 LLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGTLN 67 Query: 50 ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNR-----FTMDSQHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ + + L + +K + GSS+G + + + L + Sbjct: 128 GIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSL--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSLNS 211 ++ + DQ+L+E+ V EL L V+ EI P+ FYSYE KY SS ++ Sbjct: 186 DAFGYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSHST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + ++ + + R +SR DF P +++ E+N PGMTP+ Sbjct: 246 TDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTP-EGEIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+SF E L V+++ Sbjct: 305 SMFPKMLEHNGHSFSEFLADCVKNS 329 >gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 347 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 12/231 (5%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 V+HG +GEDG +Q L+ + + Y +G+L+SA+ MDK+ S + + + Sbjct: 94 VVHGTYGEDGTIQGFLDAVGLKYIGNGLLSSAICMDKVTSNDIFEKSKLRQAKYKYCYKE 153 Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + + P ++KP GSS+G+ ++ + L++ ++ +LL+E+ Sbjct: 154 DFDDDFMDSCIAYVGLPLIVKPSANGSSVGVSRVENKKDFKKAGLEALKYDR--KLLVEE 211 Query: 171 YVDGIELTCGVMGDA-SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E+ V+GD+ ++DV++ A +D F ++ KY S ++ LP K+ + ++ Sbjct: 212 LIIGQEIELAVLGDSDNIDVSDPAAYITDHVFLDWDAKYFSKSTREELPYKMDENDKQKA 271 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + A ++A GC G +R D + R+ + EIN PG TP S F MA Sbjct: 272 KDFARACYKAAGCEGFARVDIFYGN-DRQFYINEINTFPGFTPSSFFARMA 321 >gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] Length = 329 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGK-------------------ACASALEDAGFKVSQIDVDRS 41 +A++ GG S E EVS S + A A ++ DA + ID Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +A+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTM-----DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S ++ T + Q + S P +KP GGSS+ I++ + Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209 ++ ++ +L+E+ + G E+TCG ++ D +L VTE+ V F+ Y+ KY Sbjct: 186 VV--DAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEV-VAHDTFFDYDAKYYG- 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I ++ + VQ + + C G R DF+ + LE+N PGMT Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTL-LEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325 >gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 348 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/340 (25%), Positives = 154/340 (45%), Gaps = 53/340 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE +++L S + L +K+ + VD+ Sbjct: 6 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65 Query: 41 -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88 S+ L LK N + HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVG-- 183 Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198 + K ++I +LL+ + + +++L+E+ + G E+ ++G+ L ++ +D Sbjct: 184 -VNKAENIK-ELLKFGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHT 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257 F Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D FL D K Sbjct: 242 FLDYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFLKD---NKF 298 Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 + EIN PG TP S F + + F E+L ++E+ Sbjct: 299 YINEINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEEG 338 >gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] Length = 334 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS-----VGLVLA--------- 47 +L GG SSE EVSL S L F V ++++ + G ++ Sbjct: 8 LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + Sbjct: 68 GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ + + IK + GSS+G + K+ I Sbjct: 128 GIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCYKVTKEDQI--AAAID 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211 +++++ +Q+L+EQ V EL + L +T EI P+ FYSYE KYS S + Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++A + R +SR DF P V+ E+N PGMTP+ Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPEGH-VYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M A G+ F E L A C+R Sbjct: 305 SMFPKMLANNGHQFDEFL------ADCVR 327 >gi|221195322|ref|ZP_03568378.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185225|gb|EEE17616.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626] Length = 333 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 46/330 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ER SL SG+ + +L +GF V +D D + L KPD+AF +HG Sbjct: 5 VAVIMGGTSFERNFSLLSGRLVSESLARSGFDVLTLDADAHLVDTLRAEKPDVAFICMHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRS------------------ 96 GEDG V A+LE L IPY S + + +K MR Sbjct: 65 AGGEDGAVPALLEFLRIPYVGSRPASCRAAWNKADMPFLMRRVYGKHESLVVWPPQLVLP 124 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G I+ R S P +KP+ GGS++G+ + K + + L+ Sbjct: 125 ASAFKDLGAAKALDIIPERLGGGSGF----PLAVKPVHGGSAMGLSRVDKPEDLGHALMG 180 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 + +++ D ++I+ +V+G+E++ V+G + L EI V K Y + + + Sbjct: 181 ALAYD--DSVIIQHWVEGVEVSVTVLGTPGSEKVLPPVEIEV-KEGIYDTDARLETSRVN 237 Query: 213 HVLPAKIP--------LDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 H P + +D + +++ A ++A CR +R DF++D KV + + Sbjct: 238 HFCPVRDESLAALGSNVDNARVALEQAACEVYRAYDCRDFARVDFIWD--GHKVMVMGLK 295 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG+T S+ P AG E+L +V Sbjct: 296 TFPGLTETSLVPMAIEAAGLKRDEVLAHLV 325 >gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] Length = 348 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LAS +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|741411|prf||2007289B D-Ala D-Ala ligase Length = 348 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LAS +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 389 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 27/266 (10%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 + K D F LHG +GEDG Q +LEL+++PY G++++A+ MDK+ K+V S +P+ Sbjct: 102 YAKIDAVFPALHGTYGEDGCFQGLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPM 161 Query: 108 CPSILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 R ++ I +KP GSS+GI + + + + Sbjct: 162 TEYFYFYRDEWKNRDEIIEKAEKLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAVHY 221 Query: 161 NHGDQLLIEQYVDG-IELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSS-------- 208 + ++++E+ V+ E+ VM GD + E + D YE KY + Sbjct: 222 DR--KIIVERAVENPREINAAVMGYEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGM 279 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 N LPA IP D+ E+++ A LA +AI G +R DFL D KV+ EIN PG Sbjct: 280 KNKKKNLPADIPEDVRAEIEKYAHLAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPGS 337 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E +G SF+EL+ ++E Sbjct: 338 IAFYLWEE----SGISFKELITRLIE 359 >gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 401 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 30/244 (12%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG EDG +Q +L +L IPY + +SA+ MDK K ++ +PV + Sbjct: 101 DIAFPIVHGTNVEDGTLQGMLNMLGIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCL 160 Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +VN+F + + + P ++KP GSS+GI + + D S+ L + +++ Sbjct: 161 VVNKFKYLENSDEVEENIKSKFNYPVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY 220 Query: 163 GDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---- 214 +L++E + I E+ C V+GD AS E + + SY+ KY S + Sbjct: 221 --KLIVEPAITSIKEVNCSVLGDMESASASECEQPIGSGEILSYQDKYESSSGKKTGTSN 278 Query: 215 -------LPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 L K+P DI + ++++A + +GC G++R DF+ D K++ EIN Sbjct: 279 AKGTMESLSRKLPADIDETTRETIRKMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEIN 338 Query: 264 VQPG 267 PG Sbjct: 339 TIPG 342 >gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] Length = 334 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|150390714|ref|YP_001320763.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149950576|gb|ABR49104.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 339 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 23/280 (8%) Query: 35 QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMD 92 +I VD + L D+ FN+ G GE Q A+LE+L IPY SGILA +L+++ Sbjct: 47 KIQVDEKISENLVKSDVDIVFNLSTGVRGESRQSQIPALLEMLGIPYVGSGILAHSLALN 106 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIV--IKKD 147 K +K++ GVP P+ V F + L S P + KP GS GI V + D Sbjct: 107 KAMAKKIFQYHGVP-TPAFQV--FQTGEEKLDSNLKFPLIAKPACEGSGFGIHVDSVVYD 163 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---------SLDVTEIAVPKSD 198 + + + + +L+E++++G E T GV+G+ +D +I Sbjct: 164 EQGLMKKVSELLRQYEPPVLVEEFIEGREFTVGVIGNGESKRILPIMEIDFEDIPEEHGK 223 Query: 199 FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY++E+K + + T + PA I + + K + A +GC+ I+R D L + + Sbjct: 224 FYTFEVKNNFGDQTKYHCPASISMALEKSIMENVSKAFDVLGCKDIARVDVLVK--NERP 281 Query: 258 FWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 + LEIN PG+ + S P+MA AG S++EL++ ++E A Sbjct: 282 YILEINSLPGLKHLHSDLPKMAVVAGLSYKELIMEILEVA 321 >gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 304 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 41/312 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-----FKVSQIDVDRSVGLVLAHLKPDLAF 55 +A++ GG SSEREVSL + +A + +L+ F +S D + L LA K F Sbjct: 5 IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEIFTIS--DYRELLSLDLA--KFTRVF 60 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 LHG FGE+G+ QA LE L IPY ASA+ MDK+ +K + G+ V + Sbjct: 61 LALHGGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYLYSKN 120 Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 F S+ L P ++KP + G S G+ ++ +D L +++ +LIE+ Sbjct: 121 GDDVCFEEISERL-GTPCIVKPNREGCSFGVSLV-RDLKADLQPAINAAAKFHTGILIEE 178 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++ G EL+ + ++L + + +SDF+SY+ K+ S + L L Sbjct: 179 FISGPELSVCYLNKSTLPIYTVEF-ESDFFSYDAKFISTKTNATLSI------------L 225 Query: 231 AFLAHQAIG--CRGIS--------RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 HQ + C I+ R+DF+ + + + +E+N PG+T S+FP+ Sbjct: 226 DRSTHQLVTNYCSAIAEALELDYFRADFIVH--NTEPYLIELNTLPGLTSHSLFPKACQQ 283 Query: 281 AGYSFRELLLWM 292 G F +L+L + Sbjct: 284 HGIEFDKLVLIL 295 >gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LAS +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVEDA 296 G + +L+ +++ A Sbjct: 327 NMGLKYSDLIEELIQLA 343 >gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 18/255 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q +E + +PY +G+LAS +MDK+ +K ++ + G+P P + Sbjct: 92 IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151 Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V R F LI P +V KP GSS+GI K + L ++ + Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++EQ ++ E+ ++G+ + T E+ V FY Y+ KY + +PA + Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ + Q A A+ + G+SR DF ++F E+N PG T S++P + Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326 Query: 280 YAGYSFRELLLWMVE 294 G + +L+ +++ Sbjct: 327 NMGLKYSDLIEELIQ 341 >gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] Length = 330 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 46/332 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV---------------DRSVGLVL 46 +L GG SSE EVSL S S LE + F V ++++ D + G + Sbjct: 8 LLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGTLN 67 Query: 47 AH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 +K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G+P P I ++ + QH +K + GSS+G + + + L Sbjct: 128 GIPNTPYIFLSE---NDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQAL 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208 + ++ + DQ+L+EQ V EL L ++ E+ P+ FYSYE KY SS Sbjct: 185 --NDAFGYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASS 242 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + T V + + + ++ + + R +SR DF P ++ E+N PGM Sbjct: 243 HSKTEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTP-EGNIYLNEVNTFPGM 301 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 TP+S+FP+M G+ F E L A C+R Sbjct: 302 TPISMFPKMLENNGHKFSEFL------ADCVR 327 >gi|227488097|ref|ZP_03918413.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227541494|ref|ZP_03971543.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51866] gi|227091959|gb|EEI27271.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227182776|gb|EEI63748.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51866] Length = 315 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 18/256 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + EL +PY +G+LASA MDK +K++ G+P+ + Sbjct: 61 DVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDL 120 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSI-------PLDLLQSSSW 160 ++ ++ P +KP +GGSS+GI ++ D++I P +++ Sbjct: 121 VLEGGEEFIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPKVIIEEEIK 180 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + + +Y DG V+ A ++ ++ FY + KY + +PA++ Sbjct: 181 GIEVECGVLEYPDGR-----VVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIPARLS 235 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + V+ +A +A+ C G++R DF EIN PG TP+S++P++ Sbjct: 236 EEETARVKEIAVQTFKALNCNGLARVDFFV--TEHGPVINEINTLPGFTPISMYPQVFQA 293 Query: 281 AGYSFRELLLWMVEDA 296 G S+ +LL ++E A Sbjct: 294 EGISYGDLLHILIEQA 309 >gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3] Length = 397 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 29/265 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG EDG+ Q L+ + +PY +++SA+ MDK K V G+PV Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160 Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ + D + I+ P ++KP+ GSS+GI++ D+ LD +++ + Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218 Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212 +LL+E + + E+ C V GD A+ +E P + SYE KY + Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGM 278 Query: 213 HVLPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 L KIP DI ++++ LA A +++G G SR DF+ D + V+ EIN PG Sbjct: 279 ATLKRKIPADISDKTREQIRTLAVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 ++ + G + ELL M+ Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359 >gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] Length = 337 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 45/331 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44 +A++ GG SSE +VSL S S ++ + V +++ DR+ Sbjct: 10 IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69 Query: 45 VLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A D A+ +HG GE+G++Q +L+ IPY+ S +L AL+ +K + Sbjct: 70 FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129 Query: 102 SC---GVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK----DQS 149 S + + +ILV + + + P +KP GGSS G+ +K + Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK 205 I LL+S D+++IE+ + G E+TCG + +TE+ V + +F+ Y+ K Sbjct: 190 IEKALLES------DEVMIEKMIVGTEITCGAYKKGNEIITFPITEV-VTEEEFFDYDAK 242 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--RKVFWLEIN 263 Y+ + PA++ + V + + + C GI R D++ ++ LEIN Sbjct: 243 YNG-KVDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEIN 301 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PGMT S P+ AG E+L ++E Sbjct: 302 TTPGMTTTSFIPQQVRAAGLEIAEVLSDIIE 332 >gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] Length = 361 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 136/255 (53%), Gaps = 26/255 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108 D F V HG GEDG Q + E+ IPY+ +SA +MDK+ +K ++ + V Sbjct: 94 DFCFLVFHGTNGEDGTFQGMCEIFGIPYSGCNHFSSAFTMDKVVTKLLLKEKEISVVDFE 153 Query: 109 -PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKD--QSIPLDLLQSSSWNHG 163 + + F + + P ++KP + GSS+G+ +V +K+ +++ LL Sbjct: 154 YTTEINEEFFKRCEKNLGYPMIVKPARLGSSIGVSKVVDRKNFEEAVKNVLL------FD 207 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLN---STHVLPAK 218 +++L+E++++ E+ C VMG ++ V+E+ K+DF+++E KY S H++PA+ Sbjct: 208 NKVLVEKWINAREINCAVMGYKNIFVSELEEINKKNDFFNFEEKYFKKGKKFSNHIIPAR 267 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I ++ +++ +A + + C G R DFL ++ K++ EIN PG I+ + Sbjct: 268 IDENLKNKIKEIAKDTFKILECSGNVRIDFL---IADKIYVNEINTIPGALSFYIWQK-- 322 Query: 279 AYAGYSFRELLLWMV 293 +G++F +++ M+ Sbjct: 323 --SGFTFSQIIDNMI 335 >gi|325168553|ref|YP_004280343.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3] gi|325064276|gb|ADY67965.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3] Length = 234 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 18/231 (7%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKP 132 +P GIL SA ++DK +KQ++ + G+PV ++ V+ + S + + P +KP Sbjct: 1 MPLVGCGILGSATALDKDIAKQLLRAAGLPVARAVTVHADRVPSFDTLEIALGLPLFVKP 60 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVT 190 + GSS+G+ + +Q L + + H +LL E+++ G E+ C V+ DA L V+ Sbjct: 61 ARQGSSVGVRKVSGNQEFAPAL--AEGFKHDRKLLAEEFIRGREIECSVLEDAKGGLFVS 118 Query: 191 E----IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 I FYSY+ KY + +PA++P ++ +++ A LA +A+GC G++R Sbjct: 119 RPGEIIPAESHGFYSYDAKYIDDDGAALTVPAELPPEVETKIRETAALAFRALGCDGMAR 178 Query: 246 SDFLFDPLSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF L+ + +L E+N PG T +S++ + A +G S+ E++ +VE Sbjct: 179 VDFF---LTEDMAFLVNEVNTIPGFTDISMYAKAMAASGVSYPEVIDRLVE 226 >gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 364 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 50/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDRS 41 +A++ GG SSE V+L S +AL G +V + +VDRS Sbjct: 6 IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65 Query: 42 VGLV-----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L+ + DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140 L SA+SMDK +K+++ S G+ V P +N F + L+ S +KP GSS+G Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMN-FMRPWEELVECLGSSTLFVKPANSGSSIG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPK 196 V K ++ + + ++L+E + G E+ CGV+ G + V EI + Sbjct: 185 --VSKVSNALEYAEAFAIAACQDAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKE 242 Query: 197 SD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y Y+ KY S + + +P+ + DI + +Q L+ A + + +G +R DF Sbjct: 243 GQAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-D 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T S++P+M +GY +L+ +VE A Sbjct: 302 GAIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYA 343 >gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 345 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 149/339 (43%), Gaps = 50/339 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS---------------QIDVDRSVGLV-- 45 +L G SSE ++SL S + L + +K+ +ID LV Sbjct: 6 ILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLVRD 65 Query: 46 --------LAHL-----KPDLAFNVL----HGNFGEDGLVQAILELLEIPYTHSGILASA 88 +A+ K DL+ ++ HG +GEDG +Q +L++ + Y +G+L+SA Sbjct: 66 IKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ S + + + NR F I P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVGVS 185 Query: 143 VIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198 + + +LL++ + + ++L+E+ + G E+ V+G + DV+ SD Sbjct: 186 KVTSKE----ELLEAGYLALKYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHT 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F Y+ KY S + LP + D KE Q A++ GC G +R D + + Sbjct: 242 FLDYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFYGE-DGNFY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 EIN PG TP S F + +F E+L +++D Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDDG 339 >gi|297170214|gb|ADI21252.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured myxobacterium HF0010_08B07] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 23/304 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----RSVGLVLAHLKPDLAFNVL 58 +L GG S E +S S + ++ A F D+ +SV K L F + Sbjct: 6 ILYGGDSVESGISQQSAEGIMENIDQAKFSARMQDIKNFDFKSVD------KETLIFIAV 59 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----N 114 HG GEDG Q +L+ +I +T S +++ +K+ SK ++ +P P V Sbjct: 60 HGKDGEDGTTQKLLKKRKIKFTGSDEISTRKCWNKISSKTLMVENAIP-TPEFKVIKKNQ 118 Query: 115 RFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ Q + + +KP GSS G+ + +++ ++ + ++ + ++IE+ + Sbjct: 119 KLNLEDQFFSKNKSFFVKPNSNGSSFGVSRVDHIKNLEGAIITARKYS--EDVIIERAYN 176 Query: 174 GIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 E T G++ +L EI S+ FY YE KY S + V + I E++++A Sbjct: 177 SAEYTVGILKGEALQPLEIIAEDSEGFYDYEAKYISKGTKKVEV--VDKKIKDELKKIAL 234 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A GC+ R DF++D + + LEIN PG T S+FP A +G +++EL+ + Sbjct: 235 KAFYKHGCQTWGRVDFVYD--GKDLGVLEINTVPGFTEKSLFPLAAKLSGINYQELITNI 292 Query: 293 VEDA 296 +ED+ Sbjct: 293 IEDS 296 >gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212] gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 373 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLA---- 47 ++VL GG S+E E+S+ S K + L+ A + +S I +D VG + LA Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAYSPD 66 Query: 48 HL-----------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77 HL KP D F ++HG GEDG +Q +LELL + Sbjct: 67 HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130 PY + + +SA+ M+K +K V+ + G+PV L R + Q L+ + + Sbjct: 127 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 K + GSS+ + +K + + + + + D L++E + G E+ C V+G+ + + Sbjct: 187 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDHLMVEPRIRGREIECAVLGNGAPKAS 244 Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 EI +P D+YSY+ KY N +T + + K++Q++A A + + C G++R Sbjct: 245 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DF P + KV EIN PG T +S++P+M +G LL ++E Sbjct: 304 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 350 >gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] Length = 334 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 384 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 21/234 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F VLHG GEDG Q L+ + IPY +LA A+ DK+ KQV+ G+ V P Sbjct: 99 DLVFPVLHGTNGEDGTFQGYLKTIGIPYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWF 158 Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + F +Q L P +IKP GSS+GI V D + ++++ ++H Sbjct: 159 FWTLHQPMEQSFFKKAQRL-GYPLIIKPANLGSSVGIAVAHNDVELHKSMIEAFQYDH-- 215 Query: 165 QLLIEQYVDGI-ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSS-------LNSTH 213 +++IE+ ++ + E+ V+GD E V + + SY+ KYS L+++ Sbjct: 216 KVVIEKVIEPLREINASVLGDEDGCRCSTLEEVVKQDEILSYDNKYSGQGKSKGMLSTSR 275 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 LPA++ + +EV+ +A A +A+ G+ R DFL S ++ EIN PG Sbjct: 276 KLPAELSDEQAEEVRTMAMDAFRALNAAGVVRIDFLMHADSSALYVNEINTIPG 329 >gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] Length = 365 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 21/252 (8%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G L ++ F VLHG GEDG +Q + L+++P+ SG+L SA+ MDK K +++ Sbjct: 80 GFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGVLGSAVGMDKQAMKAALAA 139 Query: 103 CGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 +P P V +++ + + P +KP GSS+GI + Sbjct: 140 AELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANLGSSVGISKATDRDGLLAG 199 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSL 209 L +++ + +L++EQ V EL C V G + + + +D+Y Y KYS Sbjct: 200 LRSAAALD--PRLVVEQGVTARELECAVRGGGPRPLEASVLGEIRYDADWYDYATKYSEG 257 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF------DPLSRKVFWLEIN 263 S V+PA +P I + + +A A +A+ G++R DF + D +++ EIN Sbjct: 258 RSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYTAPAPGDGGEGRLWLNEIN 317 Query: 264 VQPGMTPVSIFP 275 PG T S++P Sbjct: 318 TLPGFTSQSMYP 329 >gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278] gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278] Length = 367 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 17/244 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ LEL ++ Y +L SA +MDK +K+++ G+P+ P + Sbjct: 100 DVIFPVLHGPNGEDGTVQGALELADVAYVGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFV 159 Query: 112 LVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + + ++ + S +KP GSS+GI K + + + ++ Sbjct: 160 TMTAASPVSYDDAARAVGSSELFVKPANLGSSVGI--SKTRDAAEFEAACQLALRFDRKI 217 Query: 167 LIEQYVDGI-ELTCGVM--GDASLDVTEIA--VPKSD--FYSYELKYSSLNSTHV-LPAK 218 LIE+ + + E+ C V+ D + +E+ VP + FYSYE KY+ N + +PA+ Sbjct: 218 LIERCIAPVREIECAVLEHADGQIKASELGEIVPANSHGFYSYEAKYTDANGAALHVPAQ 277 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + ++++A A+ C ++R DF +++ E+N PG T +S++P+M Sbjct: 278 VEPAVAQRIRKMATEVFGALCCESLARVDFFVR--GDEIYVNEVNTLPGFTNISMYPKMW 335 Query: 279 AYAG 282 AG Sbjct: 336 EAAG 339 >gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a] Length = 397 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG EDG+ Q L+ + +PY +++SA+ MDK K V G+PV Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160 Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ + D + I+ P ++KP+ GSS+GI++ D+ LD +++ + Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218 Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212 +LL+E + + E+ C V GD A+ +E P + SY+ KY + Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGM 278 Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 L KIP DI E ++ LA A +++G G SR DF+ D + V+ EIN PG Sbjct: 279 ATLKRKIPADISDETREQIRTLAVKAFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 ++ + G + ELL M+ Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359 >gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] Length = 364 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 59/342 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S E E+SL S + + L+D + + I +D+ GL+ H Sbjct: 7 LVLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKD-GLLHQHQYQDLLASKEKL 65 Query: 50 -------KP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 KP D+ F ++HG EDG +Q +LEL + Y +L+SA Sbjct: 66 PVVTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK ++++ G+ +++ RF + P +KP GSS+ Sbjct: 126 IGMDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM------GDASLDVT 190 GI K +D L ++ + + +++L+E +V G E+ V+ G + Sbjct: 186 GIHKAKN-----MDELINAVEDALRYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFA 240 Query: 191 -EIAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI V D FYSY KY T ++PA + +Y+++++ A + C+G++R D Sbjct: 241 GEIRVNHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVD 300 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F + + +++ E+N PG T +S++P++ +G ++ +LL Sbjct: 301 FFVNEKTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLL 342 >gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_34B07] Length = 371 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 ++ F +LHG +GEDG +Q +LEL + Y +G+ ASA+ MDK+ ++ + ++ G+P Sbjct: 96 EVVFPLLHGPYGEDGTIQGLLELAGLAYVGAGVSASAVGMDKVLARAIFAASGLPQTQYS 155 Query: 112 LVNRF-----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 ++ R ++ +H P +KP GSS+GI + Q + L +S + Sbjct: 156 VIMRSEWRREQAPVLERLEEEH--DYPLFVKPANLGSSVGISKVHDRQGLHAALELASRF 213 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218 + ++ L G + + +P +FY Y KY S V+PA Sbjct: 214 DTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGEIIPGGEFYDYTTKYIDERSQLVIPAV 273 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + VQ LA A +AI C G++R D F V EIN PG TP+S++P++ Sbjct: 274 LEKSESEAVQELAIRAFKAIDCSGLARVD-CFMCSDGSVLVNEINTMPGFTPISMYPKLW 332 Query: 279 AYAGYSFRELLLWMVE 294 A AG + +L+ +++ Sbjct: 333 AAAGIDYGDLIDRLIQ 348 >gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 390 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 28/269 (10%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 + + D F LHG FGEDG +Q + E + IPY G+LA A MDK+ K + + +PV Sbjct: 101 YARIDAIFPALHGTFGEDGAIQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPV 160 Query: 108 CPSILVNRFTM-DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 R + D Q ++ P ++KP GSS+GI +K ++ L + Sbjct: 161 VDYTYFYRSELKDLQSVLKKCEKLGYPLIVKPANLGSSIGISKVK--DTLELTKALEVAS 218 Query: 161 NHGDQLLIEQ-YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKY---------S 207 N+ ++++E+ D E+ V+GD + E + D +Y KY S Sbjct: 219 NYDKKIIVEKCLTDHREINVAVLGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMAS 278 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 N LPA + +++ ++ +LA + +AI G+SR DFL + +V+ EIN PG Sbjct: 279 QENQKKKLPADLSKEVHNKICQLAKESFKAIDATGVSRIDFLLK--NDEVYVNEINTLPG 336 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F G SF++LL ++E A Sbjct: 337 SIAFYLFE----VEGLSFKDLLTKLLEIA 361 >gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] Length = 397 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG EDG+ Q L+ + +PY +++SA+ MDK K V G+PV Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160 Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 ++ + D + I+ P ++KP+ GSS+GI++ D+ LD +++ + Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218 Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212 +LL+E + + E+ C V GD A+ +E P + SY+ KY + Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGM 278 Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 L KIP DI E ++ LA A +++G G SR DF+ D + V+ EIN PG Sbjct: 279 ATLKRKIPADISDETREQIRTLAVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 ++ + G + ELL M+ Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359 >gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331] gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331] Length = 372 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---DVDR-----SVGLVLAH---- 48 ++VL GG S+E E+S+ S K + L+ A + +S I V R + LAH Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66 Query: 49 -----------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV L R + Q L+ + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 191 --EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 EI +P D+YSY+ KY N +T + + K++Q++A A + + C G++R D Sbjct: 245 PGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F P + KV EIN PG T +S++P+M +G LL ++E Sbjct: 304 FFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349 >gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] Length = 334 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|270307989|ref|YP_003330047.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS] gi|270153881|gb|ACZ61719.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS] Length = 338 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 150/298 (50%), Gaps = 27/298 (9%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76 +A +AL+ AG V ++ + + K DL FN+ G N+ + + +ILE+L+ Sbjct: 34 EAITTALKAAGHTVYRLGGGKEFLRRVQEQKLDLVFNISEGLGNYRSREAQIPSILEMLD 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 IPYT S A+ +DK +K++V+S G+ LVN +D P + +KP Sbjct: 94 IPYTGSDPQTLAICLDKPLTKKLVASAGIKTARWQLVNNCEELSAIDWSGFPLPAF-LKP 152 Query: 133 LKGGSSLGIIVIKKDQSI------PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 GSS G+ + +SI DLL + + +LIE++++G E+T GV+G+ S Sbjct: 153 ACEGSSKGVRFASRAESIDEIMSMAADLLTT----YEQPVLIEEFINGEEITVGVIGNTS 208 Query: 187 LDVTEI--AVP--KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIG 239 +V I VP K+D++ Y ++ V +PA +P + +++ A++ + Sbjct: 209 PEVLGIMRVVPKTKTDYFVYSIEVKRNWRQMVEYEVPAALPGETLARIEKATLDAYKVLE 268 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296 CR + R DF P F LE+N PG+ PVS P MA+ G S EL+L ++ A Sbjct: 269 CRDLCRMDFRISPDGVPYF-LEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILNTA 325 >gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 384 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 21/234 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL F VLHG GEDG Q L+ L +PY +LA A+ DK+ KQV+ G+ V P Sbjct: 99 DLVFPVLHGTNGEDGTFQGYLKTLGVPYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWF 158 Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + F +Q L P +IKP GSS+GI V D + ++++ ++H Sbjct: 159 FWTLHQPMEQSFFKKAQRL-GYPLIIKPANLGSSVGIAVAHNDVELHKSMIEAFQYDH-- 215 Query: 165 QLLIEQYVDGI-ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSS-------LNSTH 213 +++IE+ ++ + E+ V+GD E + + + SY+ KY ++++ Sbjct: 216 KVVIEKVIEPLREINASVLGDEDGCRCSTLEEVIKQDEILSYQDKYHGQGKSKGMVSTSR 275 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 LPA++ + +EVQR+A +++ G+ R DFL S +++ EIN PG Sbjct: 276 KLPAELTEEQTEEVQRMAMDTFRSLNAAGVVRIDFLMQQDSGELYVNEINTIPG 329 >gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] Length = 392 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 21/234 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG Q L L IPY +L A+ DK+ KQ++ G+PV P Sbjct: 111 DMVFPILHGTHGEDGTFQGYLSTLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWF 170 Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 L + F ++ L P ++KP GSS+G V K + + L ++ + Sbjct: 171 YWTLLKPLDDTFFRKAERL-GYPLIVKPANLGSSIG--VAKVENEVELHRAMIEAYQYDG 227 Query: 165 QLLIEQYVDGI-ELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSS-------LNSTH 213 +++IE+ ++ + E+ C V+GD V E + D SY KY +N+ Sbjct: 228 RVVIEKAIEHVQEINCAVLGDEQTCEASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRR 287 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 +PA+I ++ E+Q LA + + G R DFL++ ++ ++ EIN PG Sbjct: 288 CIPARIDEELALEIQTLAKECFRCLCASGTGRIDFLYNRETKDLYINEINTIPG 341 >gi|330836876|ref|YP_004411517.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374] gi|329748779|gb|AEC02135.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374] Length = 388 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 161/367 (43%), Gaps = 78/367 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGLVLAH- 48 +AVL GG S E +VS S + L AG+ V I DV SV ++ Sbjct: 4 VAVLSGGRSPEHDVSRMSAENICKELVAAGYGVLPIVITRNGRWFLQDVHESVAVIRQEA 63 Query: 49 ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L D+ F V HG GEDG +QA+LEL +PY SG +AS + Sbjct: 64 ERGVSIHPGDGLWMNGEKLAVDIVFPVTHGTEGEDGRLQALLELAHLPYAGSGTVASMMG 123 Query: 91 MDKMRSKQVVSSCGVPVCPSILVN----------------------RFTMDS-------- 120 M K +K V G+PV PSIL++ + DS Sbjct: 124 MYKNLAKDVARILGIPVTPSILLSPDDIAWLGNDEDAPFPRLFTSFDISPDSTGTARADL 183 Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQSSSWNHGDQLLIEQYV-D 173 Q + ++KP GSS+G+ + + + I LD + ++ G+++L+E ++ D Sbjct: 184 FLGVLQEKLGKSLLVKPEASGSSVGVTALPQPGAEIFLDAV-FMAYIPGERVLVETFIPD 242 Query: 174 GIELTCGVMGDASLDVTE----IAVPKSD--FYSYELKYS-SLNSTHVLPAKIPLDIYKE 226 +EL C ++ VT + P + SY++KYS ++T P I + + Sbjct: 243 VMELECALLEAEDEIVTAGPGLVRKPAGEESILSYDIKYSVHRHATMEYPPPIAREEAEM 302 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + A A+GC G +R DF DP + ++F+ EIN PG+T S +P + G Sbjct: 303 IATYARSLFSALGCTGYARVDFFIDPSGKPDARIFFNEINTLPGLTDTSHWPFLMKCKGL 362 Query: 284 SFRELLL 290 + ++LL Sbjct: 363 EWPQMLL 369 >gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297] gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297] Length = 359 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 137/259 (52%), Gaps = 24/259 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108 D+ F VLHG +GEDG +Q + L +P SGIL SA+ MDK +K+++ G+ V Sbjct: 101 DVLFPVLHGPYGEDGSIQGLARLANLPCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYE 160 Query: 109 -------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 L+ R Q+ P +KP GSS+G+ + +++ + ++ ++ Sbjct: 161 VVRNGQLTEALIERIETRLQY----PVFVKPANMGSSIGVSKAENREALITAVADAARFD 216 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD-FYSYELKYSSLNSTHV-LP 216 ++L+E V G E+ C V+G+ + + + EIA ++ FY Y+ KY + + +P Sbjct: 217 P--KILVEALVVGREIECAVLGNDTPEASVCGEIAANQTHAFYDYDAKYIDADGAVLSIP 274 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A I + + ++ ++ + CRG++R D FL D + +V E+N PG T +S++P Sbjct: 275 AAISDEASERIREISKQVFTTLECRGLTRVDVFLTD--AGEVVINEVNTIPGFTKISMYP 332 Query: 276 EMAAYAGYSFRELLLWMVE 294 ++ ++G + +L+ +++ Sbjct: 333 KLWEHSGLPYPKLIDRLIQ 351 >gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 386 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 58/335 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ------------------- 35 +A++ GG SSE +VS S + +A+E G F ++Q Sbjct: 15 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74 Query: 36 ---ID-----VDRSVGLVLAH-LKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +D VD S L H LK D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 75 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S S+ + ++LIE+ V+G EL GV+G+ V+EI Sbjct: 195 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 252 Query: 194 -VPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 253 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 312 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281 FL D V +L E N PG T +S+F + Y+ Sbjct: 313 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 345 >gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 377 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 58/335 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A++ GG SSE +VS S + +A+E G F ++Q +D + S L L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S S+ + ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281 FL D V +L E N PG T +S+F + Y+ Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336 >gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204] gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204] Length = 401 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 78/366 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 +AV GG S E EVS+ S AL+ + V + V + L L Sbjct: 5 IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64 Query: 48 HL---------------------KP-----------DLAFNVLHGNFGEDGLVQAILELL 75 HL KP D+A V+HG GEDG +Q E+L Sbjct: 65 HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127 ++PY + +A+ DK+ K V++ +P+ V MD+ H + P Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS 186 +IKP + GSS+GI + D+ ++ ++ ++++ E+ V + E+ C V+GD+ Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLACFDEARQYD--EKIITEKVVKPMREINCSVVGDSY 242 Query: 187 LDVTEI-----AVPKSDFYSYELKY-------------SSLNSTHVLPAKIPLDIYKEVQ 228 V + +V + + S+ KY ++ ++PA + + + +Q Sbjct: 243 SCVASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQ 302 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +LA + +G G+ R DFL D ++KV+ EIN PG ++ AG SF EL Sbjct: 303 QLAKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPGSLAFYLWKA----AGVSFSEL 358 Query: 289 LLWMVE 294 + +VE Sbjct: 359 MDKLVE 364 >gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 58/335 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A++ GG SSE +VS S + +A+E G F ++Q +D + S L L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S S+ + ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281 FL D V +L E N PG T +S+F + Y+ Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336 >gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] Length = 334 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----VLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + L L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] Length = 334 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+LIEQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str. N16961] gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236] gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236] gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] Length = 334 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L+ V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLVQCVTNT 329 >gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F +LHG GEDG +Q LE + +PY +G+L SA MDK+ +K ++ + G+P P Sbjct: 85 IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVP 144 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N + + + + P IKP GSS+GI K + L ++ + Sbjct: 145 VLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI--TKAENREELQNALQEAYRYD 202 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + ++EQ ++ E+ V+G+ + T EI V FY Y KY +PA+IP Sbjct: 203 TRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFYDYNSKYLDNKIEMQIPAQIP 261 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + + Q A A+ +G G+SR DF F ++F E+N P + Sbjct: 262 EETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLNELNTIPAL 308 >gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] Length = 334 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|51921843|gb|AAU14063.1| VanB [Enterococcus faecalis] Length = 271 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 9/206 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 62 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 121 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 122 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 179 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ ++PA IP++ Sbjct: 180 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 239 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250 VQ A ++ +GCRG++R D Sbjct: 240 NRVQETAKKVYRVLGCRGLARVDLFL 265 >gi|2231987|gb|AAB62175.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 9/206 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 57 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 117 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 174 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ ++PA IP++ Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 234 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250 VQ A ++ +GCRG++R D Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260 >gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] Length = 334 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187] gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187] Length = 330 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 146/317 (46%), Gaps = 33/317 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44 +L GG SE E+SL S S L++ A V+++++ DR + Sbjct: 8 LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q++LEL+ +PY G S L +K+ +K +S+ Sbjct: 68 ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127 Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + N H + +K GSS+G K + L ++ Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVG--CYKVTDAAKLSEAVNA 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS-LNSTH 213 ++ + DQ+L+E+ V EL V + L T EIA P FYSYE KYSS NST Sbjct: 186 AFGYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245 Query: 214 VLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 L A D ++ A A +G + +SR DF ++ EIN PGMTP+S Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELL 289 +FP++ + G +F++ L Sbjct: 305 MFPKLLEHHGDNFKQFL 321 >gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 350 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 46/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------- 41 VL GG S+E ++S+ + A ++ V+ + +DR Sbjct: 5 VLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNFQL 64 Query: 42 --VGL------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 VG VL + F LHG GEDG +Q + E L + Y +G+LAS+ MDK Sbjct: 65 DQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGMDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVI 144 + SK +++ G+P P + + + + + + P +KP GSS+G+ Sbjct: 125 IVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVGVSEA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT---EIAVPKSDFY 200 D S L + ++ + ++L+E V E+ ++G+ + V+ E+A + FY Sbjct: 185 IDDAS--LLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQG-FY 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +YE KY + ++PA I ++Q A A A+ G+SR+DF + +++ Sbjct: 242 NYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYIN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + +G S+ +LL +++ Sbjct: 301 EVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQ 334 >gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] Length = 334 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQDGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|149922083|ref|ZP_01910523.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] gi|149817020|gb|EDM76502.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] Length = 674 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 19/290 (6%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILELL 75 A A+ L D G +V D+ +G +A L+ PDL N G G + L A+ E L Sbjct: 28 AIATMLRDLGHQVGLFDMSNELGQAVAELERYAPDLVLNTAEGQGGPLREALFPALFEEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKP 132 + YT SG AL++DK R+K+VV++ GVP S L+ +T + S P +IKP Sbjct: 88 GLAYTGSGPTTCALTLDKHRTKEVVAALGVPTPRSFLIEDYTELADIPASSWPIPAIIKP 147 Query: 133 LKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT------CGVMG 183 GSS G+ + + +PL L+ +L+E +V G ++T G + Sbjct: 148 NFEGSSKGVSGHSIAHDPREVPL-LVSRLLARFEAGVLVEAFVPGRDVTVPWLEVVGALP 206 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + V Y YELK PAK+ + +++ R++ A+ R + Sbjct: 207 AAEYSFGDAPVDAQQIYDYELKQDGGAVQVQTPAKLAPALARKLARMSERIVAALNVRDL 266 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R DF P S + ++LEIN P + P + E AA AG S +++L V Sbjct: 267 ARLDFRITP-SGEPYFLEINALPSLEPGASIYESAALAGLSQPDMVLGSV 315 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 23/281 (8%) Query: 7 GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE- 64 G SE E S + A A AL G V +++ + L K LAFN+ G+ G Sbjct: 353 GDDSEAEFDSRETVDALADALGQLGLDVVELEATPDLVHTLPRAKLALAFNIAEGSRGRC 412 Query: 65 -DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +V A+LELL +PYT S +A AL++DK +K V++ G+ PS V R D Sbjct: 413 RELIVPALLELLGVPYTGSDAVAMALTLDKSLAKAAVAAAGL-RTPSWAVLRRGSDPLPT 471 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSW----NHGDQLLIEQYVDGIE 176 + P +KP+ GSS GI D ++ LD L++ +W + +L+E+Y+ G E Sbjct: 472 GLRYPLFLKPIAEGSSKGI----DDGAVVLDERSLRTRAWALLARYHQPVLVEEYLPGRE 527 Query: 177 LTCGV---MGDASLDVTEIAVPKSD---FYSYELKYSS-LNSTHVLPAKIPLDIYKEVQR 229 T G+ + A L EI SD FY +E K S+ + PA++ D+ ++ Sbjct: 528 FTVGIVEALHPAVLAPMEIIHDDSDSHAFYGFESKLSADAGVRYQAPAQVDADLDDALRS 587 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 A A +A+GCR ++R D D F +E N PG++P Sbjct: 588 AAQAAFRALGCRDVARIDLRLDAAGEAHF-IECNPLPGLSP 627 >gi|83815518|ref|YP_446302.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855] gi|294508238|ref|YP_003572296.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8] gi|83756912|gb|ABC45025.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855] gi|294344566|emb|CBH25344.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8] Length = 434 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 45/272 (16%) Query: 39 DRSVGLVLAHLKPDLAFNV------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 DR+ G++ +P L + LHG GE+G VQ + E +PYT +G+ SAL MD Sbjct: 107 DRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQGLCETFNVPYTSAGVFGSALGMD 166 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143 K+ SK+V G+PV + + + + + P V+KP + GSS+GI Sbjct: 167 KVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDECEATLDYPLVVKPARCGSSIGIAQ 226 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSD- 198 + + LD + + D++++E+ V+ + E+ C V+GD A+ V E VP D Sbjct: 227 V--NTRAELDAAIEDALRYDDKVVVEKAVEALREINCSVLGDGHEATPSVLEEPVPSDDD 284 Query: 199 -FYSYELKY--------------SSLNST--------HVLPAKIPLDIYKEVQRLAFLAH 235 +++ KY S S+ ++PA + + + +Q LA Sbjct: 285 AVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQDRIVPANLSDERTETIQDLAVRIF 344 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 C G+ R DF+ D + +V++ EIN PG Sbjct: 345 HQFECAGVVRIDFMIDESTGRVYFNEINTIPG 376 >gi|188501453|gb|ACD54586.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga] Length = 349 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 26/281 (9%) Query: 27 EDAGFKVSQIDVDRS-VGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ED+ +I +DR+ L L + +K LAF ++ G GEDG +Q L++ +P+ Sbjct: 56 EDSNNNEQKIHIDRNNFSLTLPNQETIKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGC 115 Query: 83 GILASALSMDKMRSKQVVSSCG---VPVCPSILVNR----------FTMDSQHLISPPYV 129 +L+SA++ +K + ++V S + V PSI V R +++ H P + Sbjct: 116 NLLSSAITFNKSIANRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHF-RLPLI 174 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS 186 +KP GSSLG+ I + L+ + ++ +Q+L+EQ++DG ELT G + GD Sbjct: 175 VKPADSGSSLGVTKITEISQ--LNEAFNVAFKESNQILVEQFIDGRELTVGLFKINGDIQ 232 Query: 187 -LDVTEIAVPK-SDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 L +TEI + S F+ E K+ T V+ PA + +I K V+ ++ + G+ Sbjct: 233 VLPITEIVHQRASGFFDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNLSGL 292 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 R D + K+F+LE+N P T SI + A + ++ Sbjct: 293 VRIDLMLRLPDEKIFFLEVNTAPSQTEYSIIMQQMAQSEWA 333 >gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] Length = 334 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] Length = 334 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 151/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + + S + +K + GSS+G V +DQ P Sbjct: 128 GIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 358 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 50/321 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKP------ 51 VL GG S E VSL S A ++L+ + V I + ++G+V +K Sbjct: 7 VLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISELMY 66 Query: 52 -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 ++ F LHG GEDG +Q +LE+L+IPY +G+++SA Sbjct: 67 QSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMSSA 126 Query: 89 LSMDKMRSKQVVSSCGVP--VCPSILVNRFTMDS-------QHLISPPYVIKPLKGGSSL 139 + +DK+ +K + + +P +L +++ D + I P +KP GSS+ Sbjct: 127 IGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197 GI + + + ++ S+ D+L+IE+ + G E+ V+G+ + + + + Sbjct: 187 GINRCANREELEAAIHEAFSFE--DKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQER 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 F Y KY+ V+PAK+ + + ++ +A + + C G+ R D+ R Sbjct: 245 QFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDDER-- 302 Query: 258 FWL-EINVQPGMTPVSIFPEM 277 F++ E+N PG T +S+ P + Sbjct: 303 FYVNEVNTMPGFTKLSMTPAL 323 >gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218] Length = 334 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS-----VGLVLA--------- 47 +L GG SSE EVSL S L F V ++++ + G ++ Sbjct: 8 LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + Sbjct: 68 GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ + + IK + GSS+G + K+ I Sbjct: 128 DIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCYKVTKEDQI--AAAID 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211 +++++ +Q+L+EQ V EL + L +T EI P+ FYSYE KYS S + Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++A + R +SR DF P V+ E+N PGMTP+ Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPEGH-VYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M G+ F E L A C+R Sbjct: 305 SMFPKMLENNGHQFDEFL------ADCVR 327 >gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395] gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] Length = 329 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L V + Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329 >gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] Length = 334 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 44/330 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S L F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLALTPQFNVIRVEMKKDGWFSEQGELVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T DS + +K + GSS+G + +++ I + Sbjct: 128 DIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAI--E 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS----- 208 +++ +Q+L+E+ V EL + L ++ E+ P+ FYSYE KYS+ Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSHSR 245 Query: 209 --LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + H+ A+ L +Q+ A + R +SR DF F +++ E+N P Sbjct: 246 TVIEAEHLTEAQHNL-----IQQCAARVFIHMKLRHLSRIDF-FLTQDGQIYLNEVNTFP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GMTP+S+FP+M + G+ F E L V + Sbjct: 300 GMTPISMFPKMLEHNGHQFSEFLALCVTNT 329 >gi|171318067|ref|ZP_02907237.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171096746|gb|EDT41630.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 336 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 17/282 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG SSE S+++ A + + I+ D L K D N+ +G Sbjct: 20 LGILAGGYSSESHGSITNAHALLPYFQRVCQSAAIIEYDGKPSLATRLAKCDFVLNICYG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q ++ LEIPY+ S +LASA+ MDK K +V + G LV+ D Sbjct: 80 VGGEDGQIQGLMSSLEIPYSGSPVLASAIGMDKNVFKAMVRNWGFATPNGRLVSSLDPDL 139 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +Q L P+V+KPL G S G++ + ++ + + +H D ++E+Y+ G Sbjct: 140 TKNQDLGRGPFVVKPLSEGDSEGVVFVDSLDNLAMVINDIPKASH-DHWMVEEYIQGDHG 198 Query: 178 TCGVMGDA-SLDVTEIAV----PKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRL 230 T + D L +++ V Y LKY N S H+L + + +E+ Sbjct: 199 TVSMFRDEDGLHISDAIVFDLPDGHRLYDQALKYRIDNPISIHLLDPAVGERLEREIS-- 256 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + A+ C G++R D++ S +LEIN PG+ P S Sbjct: 257 --MMYMALQCEGVTRFDYVI--RSGTPHYLEINTIPGLYPGS 294 >gi|160879787|ref|YP_001558755.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428453|gb|ABX42016.1| D-alanine--D-alanine ligase domain protein [Clostridium phytofermentans ISDg] Length = 347 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 23/307 (7%) Query: 8 ISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGE 64 I +E E S+ + A +ALE + ++ D + L D+ FN+ G G Sbjct: 36 IDAEAEYDSIDTVLAIKNALECDNCHIELMEADTDLPKRLKETPVDIVFNIAEGLKGRGR 95 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123 + V A+L + IP+T S L++DK K+V+S+ + P V FT D L Sbjct: 96 EAEVPAVLNMFNIPFTGSDETTLCLALDKALCKRVLSTYRIRT-PKYRV--FTKDDNRLN 152 Query: 124 --ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S P ++KP GSS GI I I ++ L+ + +G +L+E+Y+DG E T Sbjct: 153 TNFSFPCIVKPNAEGSSKGISDICIATNKEELKTLVTDNIKAYGQDMLVEEYIDGREFTV 212 Query: 180 GVMGDAS-------LDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAKIPLDIYKEVQRL 230 GV+G+ +++ + K + YS+ +K Y L + P+K+ DI +E+ + Sbjct: 213 GVLGNGDDVHVFSPMEIIYLKKNKFNIYSFNVKQDYKKL-IRYECPSKLDPDIEEEMVFM 271 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 A + + C SR DF + K +++EIN PG+ P S FP +A + G + L+ Sbjct: 272 AKKIFKVLSCHDFSRIDFRLNS-EGKPYFIEINPLPGLAPGYSDFPMLAEFCGMDYVTLV 330 Query: 290 LWMVEDA 296 ++ +A Sbjct: 331 RSILRNA 337 >gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] Length = 334 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 146/319 (45%), Gaps = 36/319 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S LE F V ++++ + G H Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 67 NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + + T DS + +K + GSS+G K + Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTNEEQIAAAI 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS+ + + Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244 Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 L A+ D +E +Q+ A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELL 289 +S+FP+M + G+ F E L Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322 >gi|157363761|ref|YP_001470528.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] gi|157314365|gb|ABV33464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 305 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 21/243 (8%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126 V AILELL+IP T SGI+ AL +DK +K +++ GVP I + Q I P Sbjct: 64 VPAILELLKIPSTGSGIIGHALCIDKTITKIILNHYGVPTPKFISLE----PGQETIPPV 119 Query: 127 ---PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P +IKP + GS+ G+ V+K+D ++ + S H LIEQ+VDG E + G Sbjct: 120 DFYPVIIKPSREGSARGLSADSVVKEDFALKKAVKVIHSEFH-QPALIEQFVDGREFSVG 178 Query: 181 VMGDASLDVTEI---AVPK--SDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++ L + EI +P FYSY +K Y + ++ PA+I ++ + + A A Sbjct: 179 IVAGEILPILEIDFSTLPDGLERFYSYRVKHYYGEQTRYICPAQIDTELKDRISKYALTA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293 +A+ R +R D ++++LE+N P +TP S +MA AGY++ +L++ + Sbjct: 239 FKALRLRNYARMDLRVK--DGQIYFLEVNSLPMLTPGYSDIVKMAEAAGYTYEDLIMKIF 296 Query: 294 EDA 296 DA Sbjct: 297 MDA 299 >gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] Length = 350 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/315 (25%), Positives = 147/315 (46%), Gaps = 49/315 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 VL GG S+E EVS++S + + L + VS I V R Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDELVL 66 Query: 41 --------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 SV ++ + P+ + F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK + + +P +++ + D +L S +KP GSS+G++ Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201 + ++ L+ +++ + ++L+E+ + G EL VMG+ + + V + +F+ Sbjct: 185 ETEEE--LEQAIQNAFLYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y+ KY+ + + P + + + +RLA ++ + G SR D + W+ Sbjct: 243 YDAKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMF---VRDNELWVN 299 Query: 261 EINVQPGMTPVSIFP 275 EIN PG+TP S+FP Sbjct: 300 EINTVPGLTPHSMFP 314 >gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222] gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222] Length = 331 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 44/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE EVS+ S L A F V ++++ D+++ Sbjct: 8 LLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINDQTLR 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 68 GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ T + + + +K + GSS+G + +Q+ L + Sbjct: 128 GIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQV--NQAEELSEAIN 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213 ++ DQ+LIE+ V EL D L ++ E+ P FYSYE KYS+ +H Sbjct: 186 KAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSA--DSH 243 Query: 214 VLPAKIPLDIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + ++ E + L A + R +SR DF F +++ E+N PGMT Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P+S+FP+M + G+ F + L +C+R Sbjct: 303 PISMFPKMVEHDGHKFSQFL------ENCVR 327 >gi|1857220|gb|AAB49636.1| vancomycin resistance protein [Enterococcus faecalis] Length = 261 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 58 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 117 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 118 MIDKGDKPETGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 175 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP+ Sbjct: 176 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVGER 235 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250 VQ A ++A+GCRG++R D Sbjct: 236 NRVQETAKKVYRALGCRGLARVDLFL 261 >gi|188501473|gb|ACD54605.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga] Length = 349 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 26/281 (9%) Query: 27 EDAGFKVSQIDVDRS-VGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ED+ +I +DR+ L L + +K LAF ++ G GEDG +Q L++ +P+ Sbjct: 56 EDSNNNGQRIHIDRNNFSLTLPNQETVKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGC 115 Query: 83 GILASALSMDKMRSKQVVSSCG---VPVCPSILVNR----------FTMDSQHLISPPYV 129 +L+SA++ +K + ++V S + V PSI V R +++ H P + Sbjct: 116 NLLSSAITFNKSIANRIVRSFNSSIIHVSPSIDVFRSVSVDDLLVLHALETNHF-RLPLI 174 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS 186 +KP GSSLG+ I + L+ + ++ +Q+L+EQ++DG ELT G + GD Sbjct: 175 VKPADSGSSLGVTKITEISQ--LNEAFNVAFKESNQILVEQFIDGRELTVGLFKINGDIQ 232 Query: 187 -LDVTEIAVPK-SDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 L +TEI + S F+ E K+ T V+ PA + ++ K+V+ ++ + G+ Sbjct: 233 VLPITEIVHQRASGFFDSETKFEGSPETQVITPANLNEEVKKQVEAGVRELYEKLNLSGL 292 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 R D + K+F+LE+N P T S+ + A + ++ Sbjct: 293 VRIDLMLKLPDEKIFFLEVNTAPSQTEYSLIMQQMAQSEWA 333 >gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 58/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ------------------- 35 +A++ GG SSE +VS S + +A+E F ++Q Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 36 ---ID-----VDRSVGLVLAH-LKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +D VD S L H LK D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S S+ + ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D V +L E N PG T +S+F + Y+ + +L+ +++ Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] Length = 334 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S LE F V ++++ + G H Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 67 NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + + T DS + +K + GSS+G K + Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTNEEQIAAAI 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS+ + + Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244 Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 L A+ D +E +Q+ A + R +SR DF F ++ E+N PGMTP Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGHIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELL 289 +S+FP+M + G+ F E L Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322 >gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 382 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 18/252 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D + V+HGN GEDG +QA+ LL+ PY GI ASA+S DK +K++++ GV + Sbjct: 95 DFFYPVVHGNLGEDGTLQALFRLLKKPYLGPGIAASAMSFDKDLTKRILNQAGVRNTNYV 154 Query: 112 LVN-----RFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 L+ +T D + L S +K GSS+G+ + + L S +++ Sbjct: 155 LLTDQNYQDYTYDELVKELDSEVLFVKAASQGSSVGVSRVTNEDEYKAALKDSFQYDY-- 212 Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAK 218 ++L+E +D E+ ++G+ + + I +P+ D +Y Y K+ + LP + Sbjct: 213 KILVEGALDKPREVFISILGNENPRASRLGGIVLPEEDVWYDYNNKFVDASGMVFELPVE 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277 + + E+ +A A++A+G G++R DF+ D V +L E N PG T +S++P+M Sbjct: 273 LDQALTDEITDMALRAYKALGLVGLTRMDFMID--KNGVPYLGEPNTLPGFTNISLYPQM 330 Query: 278 AAYAGYSFRELL 289 +G S+ L+ Sbjct: 331 WEVSGISYTHLI 342 >gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] Length = 334 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S LE F V ++++ + G H Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 67 NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + + T DS + +K + GSS+G K + Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTSEEQIAAAI 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS+ + + Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244 Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 L A+ D +E +Q+ A + R +SR DF F ++ E+N PGMTP Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDDHIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELL 289 +S+FP+M + G+ F E L Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322 >gi|268610478|ref|ZP_06144205.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Ruminococcus flavefaciens FD-1] Length = 401 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 32/246 (13%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF ++HG EDG +Q L+ L++PY +LASA+ MDK K ++ G PV Sbjct: 101 DIAFPIVHGTNVEDGALQGYLQTLDLPYVGCDVLASAVGMDKYVMKILLKEAGFPVLDCC 160 Query: 112 LVNRFTMDS-QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + +D ++I+ P ++KP+ GSS+GI K S+ + ++ Sbjct: 161 RFSSYEIDDMDNMIAQVEAKFGYPVIVKPINLGSSVGISKAKDRDSLINSI--EEAFQFA 218 Query: 164 DQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSS--------- 208 D++L+E V + E+ C V+GD A V E V S + SY+ KY Sbjct: 219 DRILVEPAVVQLKEINCSVVGDSEEAEASVCEEPVQASSDEILSYDQKYKGDGGKNGSKS 278 Query: 209 ---LNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 L KIP +I E ++R A A + +GC G++R DF+ D + KV+ E Sbjct: 279 GGGSKGMATLKRKIPAEITPEQDEFIRRTAVDAFRYLGCNGVTRIDFMIDMATDKVYINE 338 Query: 262 INVQPG 267 IN PG Sbjct: 339 INTIPG 344 >gi|300765781|ref|ZP_07075756.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017] gi|300513475|gb|EFK40547.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017] Length = 310 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 22/215 (10%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 P ++ +I ++++ A A + G+ R+DF Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFL 309 >gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 40/321 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV-----LAHLKPDLA-- 54 +L GG SSE E+SL S L KV+++++ ++ G V L +L + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEI-KNEGWVTDQGELVYLDLNTKKL 65 Query: 55 ----FN--------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 FN +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P P + + R + + +K + GSS+G + + Q+I + Sbjct: 126 LDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ + DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L ++ +E + + + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321 >gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] Length = 334 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S LE F V ++++ + G H Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 67 NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + + T DS + +K + GSS+G K + Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTSEEQIAAAI 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS+ + + Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244 Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 L A+ D +E +Q+ A + R +SR DF F ++ E+N PGMTP Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGHIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELL 289 +S+FP+M + G+ F E L Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322 >gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 368 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + +L GG S E EVSL S + L+ + + I +D+S G H DL Sbjct: 11 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 69 Query: 54 -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F V+HG EDG +Q +LEL + Y +L+SA Sbjct: 70 PVVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 129 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK ++++ G+ L++ +F + P +KP GSS+ Sbjct: 130 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191 GI K + L+ + + + +++L+E+++ G E+ V+ ++ S+ V E Sbjct: 190 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 246 Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I V D +YSY KY + T ++PA++ + +++++ A + C+G++R DF Sbjct: 247 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 306 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + ++++ EIN PG T +S++P++ G ++ +LL Sbjct: 307 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 346 >gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD 2210633] gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 40/321 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL--------------- 46 +L GG SSE E+SL S L KV+++++ ++ G V Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEI-KNEGWVTDQGELVYLDLNTKQL 65 Query: 47 ----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P P + + R + + +K + GSS+G + + Q+I + Sbjct: 126 LDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ + DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L ++ +E ++ + + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321 >gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 377 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 58/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A+L GG SSE +VS S + A+ G F ++Q +D + S L LA Sbjct: 6 VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + LL PY + Sbjct: 66 QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDS-QHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+++ +T D + + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+GI +K ++ + + S+ + ++LIEQ V G EL GV+G+ V+EI Sbjct: 186 SSVGISRVK--NAVEFETALADSFQYDYKVLIEQAVKGPRELEVGVIGNEEPIVSEIGAH 243 Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP+ +Y Y K+ ++ + +PA++P ++ +EV+ +A +++ + RG +R D Sbjct: 244 TVPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 FL D V +L E N PG T +S+F + Y+ +L+ M+ Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348 >gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 152/321 (47%), Gaps = 40/321 (12%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVDRSVGL 44 +L GG SSE E+SL S L ++ G+ +Q +D+++ L Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQK-KL 65 Query: 45 VLAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +L D+ F V +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + R + + +K + GSS+G + + QS+ + Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ + +Q+L+E+ V EL + L +T E+ P FYSY+ KYS+ S+ Sbjct: 184 NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYST--SS 241 Query: 213 HVLP---AKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L AK + E R+A + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321 >gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 348 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 53/340 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE E++L S + L+ + + + +D+ Sbjct: 6 LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65 Query: 41 -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88 S+ L LK N + HG +GEDG +Q L+ ++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + N F + I P ++KP GSS+G Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVG-- 183 Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198 + K ++I +LL+ S + +++L+E+ + G E+ ++GD L ++ +D Sbjct: 184 -VNKAENID-ELLKFGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHI 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F Y+ KY ++ +LP + + K++ A ++A C+G +R D L F Sbjct: 242 FLDYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIF---LKDNEF 298 Query: 259 WL-EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 ++ EIN PG TP S F + + F ++L ++E+ Sbjct: 299 YINEINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEEG 338 >gi|320160017|ref|YP_004173241.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319993870|dbj|BAJ62641.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 400 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 137/309 (44%), Gaps = 47/309 (15%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A SA+E G + D ++ L +PD+ FN+ G G+ + V A+LE+L I Sbjct: 62 EAIQSAIESDGHTTRFLSADHTLLDSLREYQPDICFNIAEGIIGDAREAQVPALLEMLGI 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLK 134 PYT S +LA+AL +DK +K++ + G+P F + L +S P +KP + Sbjct: 122 PYTASRVLANALGLDKTMTKRIWRNLGIPTA---SFQEFITGDEPLEADLSFPLFVKPAR 178 Query: 135 GGSSLGI----IVIKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDAS- 186 G+ +G+ IV ++Q L + W + L+E Y+ G E T GV+G A Sbjct: 179 EGTGMGMDEGSIVYNENQ-----LRRRVKWVIEAYHQPALVETYLPGREFTVGVLGRADA 233 Query: 187 --------------------LDVTEIAVPKSDFYSYELKYSSLNSTHV----LPAKIPLD 222 L+V Y Y K V PA++ D Sbjct: 234 RRWSPKPHLYRADGFHRFPILEVDNSNTVTPGVYGYAAKTLHPGEEGVPGFICPAQVEPD 293 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYA 281 + +++ LA AH AIG +SR D D LEIN PG+TP S +A Sbjct: 294 LAEKLWTLAIRAHNAIGALDVSRVDVRLDAHGNPRL-LEINTLPGLTPGFSDLCVIAQAE 352 Query: 282 GYSFRELLL 290 G S+R+L+L Sbjct: 353 GLSYRDLIL 361 >gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 364 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + +L GG S E EVSL S + L+ + + I +D+S G H DL Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65 Query: 54 -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F V+HG EDG +Q +LEL + Y +L+SA Sbjct: 66 PVVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK ++++ G+ L++ +F + P +KP GSS+ Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191 GI K + L+ + + + +++L+E+++ G E+ V+ ++ S+ V E Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242 Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I V D +YSY KY + T ++PA++ + +++++ A + C+G++R DF Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + ++++ EIN PG T +S++P++ G ++ +LL Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 342 >gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris] gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris] gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 364 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + +L GG S E EVSL S + L+ + + I +D+S G H DL Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65 Query: 54 -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F V+HG EDG +Q +LEL + Y +L+SA Sbjct: 66 PVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK ++++ G+ L++ +F + P +KP GSS+ Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191 GI K + L+ + + + +++L+E+++ G E+ V+ ++ S+ V E Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242 Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I V D +YSY KY + T ++PA++ + +++++ A + C+G++R DF Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + ++++ EIN PG T +S++P++ G ++ +LL Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLL 342 >gi|293401980|ref|ZP_06646120.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304638|gb|EFE45887.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 386 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 67/349 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL------------------EDAGFKVSQIDVDRS- 41 +A+ GG+S E E+S+ S +A DA F+ +++ D + Sbjct: 8 VAIAFGGVSVEHEISILSAMQAIAAFPDAYEIVPLYIAKDGRMYSDASFQKTEVFQDLTK 67 Query: 42 -------VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 V LV H + D +LHG GEDG Q L+ L +P Sbjct: 68 VTQEKYEVQLVREHQRVLMQWKKHHFWKTSRVIDFVLPILHGTNGEDGSFQGFLKTLHVP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIK 131 + G+L+ AL DK+ K ++ G+P+ P L F +Q L P +IK Sbjct: 128 FAQCGVLSGALGQDKVAMKMILQDRGLPLVPWFYWWKQEPLEEAFFAKAQRL-GYPMIIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG---DASL 187 P GSS+GI V++ Q + + + + D+++IE+ + + E+ V+G DA Sbjct: 187 PSNLGSSIGIAVVQNAQELKKAM--EEGFQYDDKIVIEKMITPLREINASVLGNMEDAKC 244 Query: 188 DVTEIAVPKSDFYSYELKYSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V E V + S++ KY + +PA + + +E+ A + QA+ Sbjct: 245 SVLEEVVKQDTILSFQDKYEGHAKSKGMAGTNRRVPASLEKEEAQEITSYALASFQALQA 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G+ R DFL + ++ ++ EIN PG S+ + +G +F +LL Sbjct: 305 EGVVRIDFLMNADTKDIYVNEINSIPG----SLAYYLWEASGLTFTKLL 349 >gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b] Length = 364 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + +L GG S E EVSL S + L+ + + I +D+S G H DL Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65 Query: 54 -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F V+HG EDG +Q +LEL + Y +L+SA Sbjct: 66 PVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139 + MDK ++++ G+ L++ +F + P +KP GSS+ Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191 GI K + L+ + + + +++L+E+++ G E+ V+ ++ S+ V E Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242 Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I V D +YSY KY + T ++PA++ + +++++ A + C+G++R DF Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + ++++ EIN PG T +S++P++ G ++ +LL Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 342 >gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] Length = 331 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 42/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVSL S L+ F V ++++ +S G L Sbjct: 8 LLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEI-KSEGWCLDSGELVYLDINNQTL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 67 RGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + ++ T ++ + + +K + GSS+G + + + + Sbjct: 127 LGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAI-- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLN 210 + ++ + DQ+L+E+ V EL D L ++ E+ P FYSYE KYS S + Sbjct: 185 NKAFTYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V + + + + + A + R +SR DF F +++ E+N PGMTP Sbjct: 245 ITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +S+FP+M + G+ F + L +C+R Sbjct: 304 ISMFPKMVEHDGHKFAQFL------ENCVR 327 >gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116] gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116] Length = 329 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 40/321 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV-----LAHLKPD---- 52 +L GG SSE E+SL S L V+++++ ++ G V L +L P+ Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEI-KNEGWVTNQGELVYLDPNQKKL 65 Query: 53 ----LAFNV------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 L+ +V +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + R + + +K + GSS+G + QS+ + Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ + +Q+L+E+ V EL + L +T E+ P FYSY+ KYS+ S+ Sbjct: 184 NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYST--SS 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L ++ +E +A + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321 >gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] Length = 335 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 149/318 (46%), Gaps = 34/318 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----------------SVGLV 45 +L GG SSE E+SL S L+ F+V ++++ + S L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSATLN 67 Query: 46 LAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + F V +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T DS + +K + GSS+G + ++ I + Sbjct: 128 DIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAI--E 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNST 212 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS S +S Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSHSR 245 Query: 213 HVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V+ A + +E +Q+ A + R +SR DF F ++ E+N PGMTP+ Sbjct: 246 TVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDF-FLTQDDHIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELL 289 S+FP+M + G+ F L Sbjct: 305 SMFPKMLEHNGHRFSAFL 322 >gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] Length = 329 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 149/324 (45%), Gaps = 46/324 (14%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43 +L GG SSE E+SL S L ++ G+ +Q +D++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + R ++ + +K + GSS+G VI+KD+ L Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDK---LSNAV 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 H L ++ LD + F + + R +SR DF +++ E+N Sbjct: 242 HSLTEVEAKNLTQVQLDSIQHASETVF---RQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PGMTP+S+FP+M G+ F E L Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321 >gi|298378695|ref|ZP_06988579.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli FVEC1302] gi|298281029|gb|EFI22530.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli FVEC1302] Length = 215 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 13/212 (6%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQ----HLISPPYVIKPLKGGSSLGII 142 DK+RSK + G+PV P + + R D Q + P ++KP + GSS+G+ Sbjct: 5 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 64 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + + ++ D L+ + + H +++LIE+++ G E T ++G+ L I P FY Y Sbjct: 65 KVVAENALQ-DALRLA-FQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ-PSGTFYDY 121 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY S + + PA + +Q L A +GC+G R D + D + + LE Sbjct: 122 EAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEA 180 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PGMT S+ P A AG SF +L++ ++E Sbjct: 181 NTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 212 >gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] Length = 350 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 49/315 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49 VL GG S+E EVS++S + + L + V+ I V R+ ++ L Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66 Query: 50 KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 DL+ F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK + + +P +++ + D +L S +KP GSS+G++ Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201 + ++ L+ +++ + ++L+E+ + G EL VMG+ + + V + +F+ Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y+ KY+ + + P + + + + LA ++ + G SR D + W+ Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299 Query: 261 EINVQPGMTPVSIFP 275 EIN PG+TP S+FP Sbjct: 300 EINTVPGLTPHSMFP 314 >gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] Length = 350 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 49/315 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49 VL GG S+E EVS++S + + L + V+ I V R+ ++ L Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66 Query: 50 KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 DL+ F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK + + +P +++ + D +L S +KP GSS+G++ Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201 + ++ L+ +++ + ++L+E+ + G EL VMG+ + + V + +F+ Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y+ KY+ + + P + + + + LA ++ + G SR D + W+ Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299 Query: 261 EINVQPGMTPVSIFP 275 EIN PG+TP S+FP Sbjct: 300 EINTVPGLTPHSMFP 314 >gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] Length = 334 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 140/318 (44%), Gaps = 34/318 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQIDV----DRSVGLV 45 +L GG SSE E+SL S L + AG+ D+ S L Sbjct: 8 LLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSASLN 67 Query: 46 LAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 H + F V +HG GE G +Q++LEL IPY G AS+ S +K+ SK + Sbjct: 68 SEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + ++ + IK + GSS+G + Q I + Sbjct: 128 GIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAI--D 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211 ++ DQ+L+EQ V EL L +T EI P FYSYE KYS S + Sbjct: 186 DAFTFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSHSM 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V I + ++R A + R ++R DF +++ E+N PGMTP+ Sbjct: 246 TKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQG-EIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELL 289 S+FP+M + G+SF L Sbjct: 305 SMFPKMLEHHGHSFSVFL 322 >gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1] gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 367 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q LEL ++ Y + ++ SA +MDK +K+++ G+P+ P + Sbjct: 100 DVIFPVLHGPNGEDGTMQGALELADVAYVGARVMGSAAAMDKDVAKRLLRDAGLPIVPFV 159 Query: 112 LVNRFT----MDSQHLIS-PPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGD 164 + D+ H + IKP GSS+GI + Q + DL + Sbjct: 160 TMTAAAPVSYEDAVHAVGCSELFIKPANLGSSVGISKARTPQEFAAACDL----ALRFDG 215 Query: 165 QLLIEQYVDGI-ELTCGVM--GDASLDVTEIA--VPKSD--FYSYELKYS--SLNSTHVL 215 ++LIE+ + + E+ C V+ D + +E+ VP S FYSY KY+ S S HV Sbjct: 216 KILIERCISPVREIECAVLEHADGEVKASELGEIVPASSHGFYSYAAKYTDASGASLHV- 274 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++ + + ++++A + C ++R DF +V+ E+N PG T +S++P Sbjct: 275 PAQVEPGLAQRIRKMATEVFGVLCCESLARVDFFVH--GEEVYVNEVNTLPGFTNISMYP 332 Query: 276 EM 277 +M Sbjct: 333 KM 334 >gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2] gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1] gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3] gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium sp. P08] Length = 255 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 18/253 (7%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ 110 +LHG GE+G + +L+L+ IPY SG A +S DK + +++++ GV Sbjct: 1 MLHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDKSIASRIMTAVGVATPQQVALPHD 60 Query: 111 ILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 I T H I+ P ++KP +GGSSLG+ + ++P + ++++ + D + Sbjct: 61 IFRELGTRPVIHSITKKFGLPIIVKPARGGSSLGVTRVDDIDALPQAI--ANAYAYDDMV 118 Query: 167 LIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +IE+++ G EL G++ G L E+ P Y Y Y+ + PA+I + Sbjct: 119 VIEEFIVGTELAIGMITTSEGTQVLPAVEVR-PVGGVYDYSAMYTGGETRLTAPAEITDE 177 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + +A + + GISR D + D R VF LE PGMT S+ P A Sbjct: 178 VAQAATEMARVVQGELDFFGISRVDAIVDGSGRPVF-LEAGAAPGMTATSLVPVAMKAAD 236 Query: 283 YSFRELLLWMVED 295 E+ +V+D Sbjct: 237 LDLGEVCSRLVDD 249 >gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] Length = 350 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 144/315 (45%), Gaps = 49/315 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49 VL GG S+E EVS++S + + L + V+ I V R ++ L Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEELIL 66 Query: 50 KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 DL+ F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK + + +P +++ + D +L S +KP GSS+G++ Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201 + ++ L+ +++ + ++L+E+ + G EL VMG+ + + V + +F+ Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y+ KY+ + + P + + + + LA ++ + G SR D + W+ Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299 Query: 261 EINVQPGMTPVSIFP 275 EIN PG+TP S+FP Sbjct: 300 EINTVPGLTPHSMFP 314 >gi|257792714|ref|YP_003183320.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243] gi|325831132|ref|ZP_08164456.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] gi|257476611|gb|ACV56931.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243] gi|325487053|gb|EGC89499.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 36/321 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL+S K +ALE+AG + +D + L +PD+ FN LHG Sbjct: 3 VAVLTGGSSTERELSLASAKNVCAALEEAGHRTVLLDASSDLVSALRVERPDVCFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK------------MRSKQVVSSCGVPVC 108 GEDG VQ++LE + +P+ S + DK + + +S VC Sbjct: 63 KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122 Query: 109 PSI-------LVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + F + +I P +KP G S+ G V + D L S + Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASG--VRRVDSVDQLGEAVSDAL 180 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214 + D ++IEQ++DG+E+T V+G +L EI + D + + V Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240 Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 PA + D I E++R A +A R ++R D ++D +V LE++V P + Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPSL 298 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 S F +G S +L Sbjct: 299 AESSPFSLACEASGLSLSGVL 319 >gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32] gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32] Length = 331 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 44/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE EVS+ S L F V ++++ D+++ Sbjct: 8 LLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEIKNEGWCLDSGELVYLDINDQTLR 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 68 GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ T + + + +K + GSS+G + + + + + + Sbjct: 128 GIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAI--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213 ++ DQ+LIE+ V EL D L ++ E+ P FYSYE KYS+ +H Sbjct: 186 KAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSA--DSH 243 Query: 214 VLPAKIPLDIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + ++ E + L A + R +SR DF F +++ E+N PGMT Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P+S+FP+M + G+ F + L +C+R Sbjct: 303 PISMFPKMVEHDGHKFSQFL------ENCVR 327 >gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14] gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14] Length = 331 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-------------------DAGFKVSQIDVDRSVG 43 +L GG S+E EVSL S L+ DA + ++++D+++ Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + + D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ ++ + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPKSDFYSYELKYS--SLN 210 +++ + DQ+LIE+ + EL GD L +T E++ P FYSYE KYS S++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGD-ELVITKPGEVSCPTDKFYSYEEKYSADSVS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +T V + D + ++ A A + + +SR DF ++ EIN PGMTP Sbjct: 245 TTMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E + ++ A Sbjct: 304 ISMFPKMLEHHGHKFAEFIEQAIKSA 329 >gi|167647366|ref|YP_001685029.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] gi|167349796|gb|ABZ72531.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] Length = 331 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 145/321 (45%), Gaps = 44/321 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51 +L GG S ER VS++S KA A+AL DA D D+ S ++ AH +P Sbjct: 5 ILFGGTSRERLVSVASAKALATALPDADLWFWAPD-DKVYVASDAVLQAHARPFEIDLPT 63 Query: 52 --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + A + +HG E+G + A+ E + +T S +S L+ D Sbjct: 64 EGAAIGGIEAALDKAKAEERVLVLGMHGGAAENGDLAALCEARGVAFTGSDSRSSRLAFD 123 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+ +K V+ GV V PS + + V KP+ GSS G+I + P Sbjct: 124 KIATKAAVAKAGV-VAPSTVELADAEAALAKYGK-LVAKPVADGSSYGLIFVNG----PA 177 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSS 208 DL ++ + +IE +V G E TCGV+ +L EI P + Y KY S Sbjct: 178 DLETLAAAAGREAYVIEPFVAGAEATCGVLEQDGKVFALPPVEIR-PADGAFDYVGKYLS 236 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + + PA + +Q A AH+ +G G SRSDF+ P +LEIN PGM Sbjct: 237 KTTEEICPATFAPAVNAAMQEAALKAHKTVGAGGYSRSDFIVTP--NGPIFLEINTLPGM 294 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 T S++P+ G +F++ L Sbjct: 295 TAASLYPKSLKAQGIAFKDFL 315 >gi|256786060|ref|ZP_05524491.1| D-alanine--D-alanine ligase B [Streptomyces lividans TK24] Length = 364 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/323 (26%), Positives = 156/323 (48%), Gaps = 46/323 (14%) Query: 1 MAVLMGGISSERE-------VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53 +A++ G +S+E V S A A ALE+ G + ++ ++ ++ D+ Sbjct: 32 VALVNGPVSAEDRLYHSKCPVEQRSVTALAEALEEIGARWKVLNPCEP-DFIMELVEYDV 90 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV------ 107 A + LHG +GEDG +Q +L+ L +PY SG+ ASA++ DK+ K+V+ + GVP Sbjct: 91 ALSNLHGPYGEDGRLQGLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVW 150 Query: 108 --CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P R M +KP GGSS+G+ +++ +P L ++ + Sbjct: 151 SGGPVAWYGRTIM-----------VKPPFGGSSVGMSLVRDPADLP-GALADAAGDGCAP 198 Query: 166 LLIEQYVDGIELTCGVM---GDASLDVTEIAV--PKSDFYSYELKYS-------SLNSTH 213 +LIE+YV G +T G++ G +++ + ++DFY + K ++ + + Sbjct: 199 VLIEEYVTGTPMTVGLLELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAAN 258 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA + ++ A +G RG +R DF+ + + LE+N PGM+ S Sbjct: 259 LAPAAL-----DKITAHARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSN 312 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 F AA G + E++L M+ +A Sbjct: 313 FAVGAAMVGLTHTEVVLAMLHEA 335 >gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 331 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51 +L GG S+E EVSL S L+ G +++++ ++ G + + +P Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L L +P+ G AS +K+ +K + Sbjct: 68 VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ + ++ + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS--LNS 211 +++ + DQ+LIE+ + EL L +T E++ P FYSYE KYSS L++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+ F E + +++A Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329 >gi|116490730|ref|YP_810274.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1] gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429] gi|122277086|sp|Q04G13|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1] gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429] Length = 377 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 18/252 (7%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 86 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 145 Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 I++ N+ DS + +K GSS+G+ + + L S Sbjct: 146 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGVSRVTNAEEYENAL--RDS 203 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD----FYSYELKY-SSLN 210 + + ++LL+E+ V+ EL G++G+ + + I P D ++ Y+ K+ + Sbjct: 204 FQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPGQDHGSGWFDYKNKFVDNSK 263 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PAKI KE++ +A A++ +G +G +R DFL ++F E N PG T Sbjct: 264 MKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMSK-DGEIFLSEPNTLPGNTN 322 Query: 271 VSIFPEMAAYAG 282 +S+FP + AG Sbjct: 323 MSLFPILFEAAG 334 >gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 380 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 127/263 (48%), Gaps = 18/263 (6%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 +A K D+ F VLHG GEDG +Q +LE + +PY G+ ASA +DK +K + + Sbjct: 99 IAGKKFDIVFPVLHGLNGEDGTIQGMLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDI 158 Query: 106 PVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 PV V ++ D Q ++ P+ +KP + GSS+GI + + ++ L Sbjct: 159 PVMDYTAVKKYEWENSTENIINDIQKKMNYPFYVKPARLGSSIGI--SRAENTVELKTSL 216 Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMG---DASLD-VTEIAVPKSDFYSYELKYSSLNS 211 ++ + ++++EQ V+ ELT GVMG SL + E + + +++++ KY Sbjct: 217 KDAFKYDCKVVVEQGVESPRELTVGVMGIDDQVSLSAIGEFSRGSNLYFNFDSKYGKTGH 276 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++PA + +I + +++ + L + G +R D+ KV+ EIN PG Sbjct: 277 KGLVPAPLEENIQEIIEKYSHLIFKKFELSGFARIDYFL--CGDKVYLNEINTMPGFETG 334 Query: 272 SIFPEMAAYAGYSFRELLLWMVE 294 F + G ++ + +E Sbjct: 335 DTFMRIWQNKGVDMQKFIDKAIE 357 >gi|289769956|ref|ZP_06529334.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24] gi|289700155|gb|EFD67584.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24] Length = 326 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 39/307 (12%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 S+ V S A A ALE+ G + ++ ++ ++ D+A + LHG +GEDG +Q Sbjct: 10 SKCPVEQRSVTALAEALEEIGARWKVLNPCEP-DFIMELVEYDVALSNLHGPYGEDGRLQ 68 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSILVNRFTMDSQ 121 +L+ L +PY SG+ ASA++ DK+ K+V+ + GVP P R M Sbjct: 69 GLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVWSGGPVAWYGRTIM--- 125 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 +KP GGSS+G+ +++ +P L ++ + +LIE+YV G +T G+ Sbjct: 126 --------VKPPFGGSSVGMSLVRDPADLP-GALADAAGDGCAPVLIEEYVTGTPMTVGL 176 Query: 182 M---GDASLDVTEIAV--PKSDFYSYELKYS-------SLNSTHVLPAKIPLDIYKEVQR 229 + G +++ + ++DFY + K ++ + ++ PA + ++ Sbjct: 177 LELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAAL-----DKITA 231 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +G RG +R DF+ + + LE+N PGM+ S F AA G + E++ Sbjct: 232 HARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHTEVV 290 Query: 290 LWMVEDA 296 L M+ +A Sbjct: 291 LAMLHEA 297 >gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus oeni ATCC BAA-1163] gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus oeni ATCC BAA-1163] Length = 377 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 18/252 (7%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 86 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 145 Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 I++ N+ DS + +K GSS+G+ + + L S Sbjct: 146 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGVSRVANAEEYENAL--RDS 203 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD----FYSYELKY-SSLN 210 + + ++LL+E+ V+ EL G++G+ + + I P D ++ Y+ K+ + Sbjct: 204 FQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPGQDHGSGWFDYKNKFVDNSK 263 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PAKI KE++ +A A++ +G +G +R DFL ++F E N PG T Sbjct: 264 MKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMSK-DGEIFLSEPNTLPGNTN 322 Query: 271 VSIFPEMAAYAG 282 +S+FP + AG Sbjct: 323 MSLFPILFEAAG 334 >gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] Length = 331 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-------------------DAGFKVSQIDVDRSVG 43 +L GG S+E EVSL S L+ DA + ++++D+++ Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L + D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ ++ S + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPKSDFYSYELKYS--SLN 210 +++ + DQ+LIE+ + EL GD L +T E++ P FYSYE KYS S++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGD-ELVITKPGEVSCPTDKFYSYEEKYSADSVS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +T V + + + ++ A A + + +SR DF ++ EIN PGMTP Sbjct: 245 TTMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G +F + + +++A Sbjct: 304 ISMFPKMLEHNGQTFADFIEQAIKNA 329 >gi|2231985|gb|AAB62174.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 57 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 117 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 174 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 234 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250 VQ A ++ +GCRG++R D Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260 >gi|317489001|ref|ZP_07947528.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|316911868|gb|EFV33450.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] Length = 328 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 36/321 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL+S K +ALE+AG + +D + L +PD+ FN LHG Sbjct: 3 VAVLTGGSSTERELSLASAKNVCAALEEAGHRKVLLDASSDLVSALRVERPDVCFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK------------MRSKQVVSSCGVPVC 108 GEDG VQ++LE + +P+ S + DK + + +S VC Sbjct: 63 KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122 Query: 109 PSI-------LVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + F + +I P +KP G S+ G V + D L S + Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASG--VRRVDSVDQLGEAVSDAL 180 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214 + D ++IEQ++DG+E+T V+G +L EI + D + + V Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240 Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 PA + D I E++R A +A R ++R D ++D +V LE++V P + Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPSL 298 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 S F +G S +L Sbjct: 299 AESSPFSLACEASGLSLSGVL 319 >gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862] Length = 382 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 129/251 (51%), Gaps = 16/251 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL + V+HGN GEDG +QA+ LL+ PY G ASA+S DK +K++++ G+ + Sbjct: 95 DLFYPVVHGNLGEDGTLQALFRLLQKPYIGPGTAASAMSFDKDLTKRILNQAGIRNTKYV 154 Query: 112 LVN-----RFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 L+ +T + + L + +K K GSS+GI + + + +++ Sbjct: 155 LLTDQNFQDYTYEGLVKELGTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDY-- 212 Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAK 218 ++L+E + E+ ++G+ + I +P+ D +Y Y K+ + LP + Sbjct: 213 KVLVEAALTKPREVFISILGNEQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVE 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + D+ KE+ +A A++A+G G++R DF+ D + E N PG T +S++P+M Sbjct: 273 LGDDLEKEITDMALNAYKALGLVGLTRMDFMIDA-DGTPYLGEPNTLPGFTNISLYPQMW 331 Query: 279 AYAGYSFRELL 289 +G S+ L+ Sbjct: 332 EVSGISYTNLI 342 >gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] Length = 329 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 46/324 (14%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43 +L GG SSE E+SL S L ++ G+ +Q +D++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + R ++ + +K + GSS+G V KD+ L Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDK---LSNAV 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 H L +I LD + F + + R +SR DF +++ E+N Sbjct: 242 HSLTEVEAKNLTQIQLDSIQHASETVF---KQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PGMTP+S+FP+M G+ F E L Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321 >gi|2231989|gb|AAB62176.1| vancomycin resistance protein B [Enterococcus faecium] gi|2231991|gb|AAB62177.1| vancomycin resistance protein B [Enterococcus faecium] gi|2231993|gb|AAB62178.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 57 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 117 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 174 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 234 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250 VQ A ++ +GCRG++R D Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260 >gi|17902566|emb|CAC84690.1| D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISR 245 K VQ A ++ +GCRG++R Sbjct: 269 KRVQETAKKVYRVLGCRGLAR 289 >gi|325844429|ref|ZP_08168156.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp. HGF1] gi|325489103|gb|EGC91487.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp. HGF1] Length = 403 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 32/246 (13%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+A V+HG GEDG +Q EL IPY+ + A+A+ DK+ K ++ G+P+ + Sbjct: 101 DVAIPVIHGTNGEDGALQGFFELNGIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYV 160 Query: 112 -------LVN-RFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 N +D+ + +S P ++KP+ GSS+GI K S+ + ++ S+++ Sbjct: 161 WYYSSDWFANPEACLDAIESKLSYPLMVKPVSLGSSVGISKAKDRASLEEAITEAISYDN 220 Query: 163 GDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSS---------- 208 + ++E+ V +E+ C V+GD A V E + +F SY+ KY Sbjct: 221 --KFIVEEMVTQLVEVNCSVIGDFSGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTG 278 Query: 209 -------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ ++PA++ + K VQ LA + +G G++R DFL + + V+ E Sbjct: 279 GTKSQGMASTNRIIPARLTDEGTKYVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNE 338 Query: 262 INVQPG 267 IN PG Sbjct: 339 INTIPG 344 >gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] Length = 329 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 46/324 (14%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43 +L GG SSE E+SL S L ++ G+ +Q +D++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 G+P P + + R ++ + +K + GSS+G V +KD+ L Sbjct: 127 GIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDK---LSNAV 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 H L + LD + F + + R +SR DF +++ E+N Sbjct: 242 HSLTEVEAKNLTQAQLDAIQHASERVF---KQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PGMTP+S+FP+M G+ F E L Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321 >gi|325971616|ref|YP_004247807.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] gi|324026854|gb|ADY13613.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] Length = 360 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSV- 42 +A++ GG S+E EVS++S AL+ AG++V I +D ++ Sbjct: 3 IALVYGGRSTEHEVSIASALTVHRALKQAGYRVLLIAIALDGRWYLQPNLLSKSIDATIP 62 Query: 43 -----GLVL----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 GL L A L D F HG GEDG +Q + L +P ++SAL M K Sbjct: 63 IHAVPGLGLYVQDAKLDIDAVFATTHGYGGEDGNLQGLCMLCRLPLCGCDTVSSALGMHK 122 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIKPLKGGSSLGIIV 143 + ++ +P P++L+++ + ++ + P +KP GSS+G+ Sbjct: 123 HLASELFMQALIPTVPTLLLDKNAVQQVEYTTLLERARSTLGPDLFVKPENSGSSVGVSA 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVM--GDASLDVT------EIAV 194 +K + L + + +++LI+ + + EL V+ D L V + A Sbjct: 183 LKDCDAKALQQAVELARRYSERVLIQLLIHPLQELETAVLETRDKGLVVAGPGLVIDPAK 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP--LD-----IYKEVQRLAFLAHQAIGCRGISRSD 247 F SYE KY +++ H+ +IP LD I K R AFL AI G +R D Sbjct: 243 ETVGFLSYEHKYGKVDTAHI---RIPSGLDDTTETIIKNYARKAFL---AIKGDGYARID 296 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F +++ EIN PG+T S +P + A GY + +VE+A Sbjct: 297 FFVS--ENRIYLNEINTSPGLTDTSHYPALLASVGYDLSSVCKHLVENA 343 >gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] Length = 331 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 48/333 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR------SVGLVLAHL------ 49 +L GG SSE EVSL S L A F V ++++ S LV + Sbjct: 8 LLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINNQTLR 67 Query: 50 ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 68 GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ + + + +K + GSS+G + + + + + + Sbjct: 128 GIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAI--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213 ++ DQ+L+E+ V EL D L ++ E+ P FYSYE KYSS +H Sbjct: 186 KAFTFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSS--DSH 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQA------IGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + ++ E +L +A A + R +SR DF F +++ E+N PG Sbjct: 244 SITEIEANNLTDE--QLELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPG 300 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 MTP+S+FP+M + G+ F + L +C+R Sbjct: 301 MTPISMFPKMVEHDGHKFSQFL------ENCVR 327 >gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4] gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4] Length = 329 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/326 (25%), Positives = 151/326 (46%), Gaps = 40/326 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47 +L GG S+E E+SL S L V+++++ +S G + Sbjct: 7 LLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEI-KSEGWITNQGELVYLDLNTKKL 65 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +L+ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + R + + +K + GSS+G + + Q++ + Sbjct: 126 IGIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ + +Q+L+E+ V EL + L +T E+ P FYSY+ KYS NS+ Sbjct: 184 NDAFGYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYS--NSS 241 Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L ++ +E +++ + + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S+FP+M G+ F + L +E Sbjct: 301 TPISMFPKMLQNNGHKFHQFLADCIE 326 >gi|300172646|ref|YP_003771811.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887024|emb|CBL90992.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 377 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 62/337 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A+L GG SSE +VS S + A++ G F ++Q +D + S L L Sbjct: 6 VALLFGGNSSEHDVSKRSAQNFYDAIKATGKYEITVFAIAQNGYFLDPESSNRVLALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL PY + Sbjct: 66 QPIVDAYMAKIDTTDPLARISALSEGGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136 + A+S DK +K++++ G+ ++++ T + +K G Sbjct: 126 PLRGHAVSFDKAMTKELLTVNGIRNTKYVVLDPKTAKEWTWEKVVAALGDIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+GI K ++ + S S+ + ++L+EQ V G EL GV+G+ V+EI Sbjct: 186 SSVGISRAK--NAVEFEAALSDSFQYDYKVLVEQAVKGSRELEVGVIGNEEPIVSEIGAH 243 Query: 194 -VPKSD----FYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +P +Y Y K+ ++++ VL PAK+P + EV+ +A A++ + RG +R Sbjct: 244 TLPNQGSGDAWYDYNNKF--VDNSDVLFEIPAKLPESVTNEVKDMAIQAYKVLNLRGEAR 301 Query: 246 SDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281 DFL D V +L E N PG T +S+F + Y+ Sbjct: 302 MDFLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336 >gi|5616190|gb|AAD45667.1|AF136925_1 D-alanine-D-serine ligase [Enterococcus faecalis] Length = 201 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------ 122 Q + ELL+IPY GI A+A+SM+K+ Q GV PS+++ + D Q Sbjct: 1 QGVFELLDIPYVGCGIGAAAISMNKIMLHQFAEIVGVKSTPSMIIEK-GQDLQKVDEFAK 59 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP + GSS GI +++ + + ++S ++ ++LI++ V G+E+ CG++ Sbjct: 60 IHGFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEASKYDS--RILIQKEVKGVEIGCGIL 117 Query: 183 GDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ L V E + D F+ YE KY+ + + +LPAK+ +D +++Q A ++ +GC Sbjct: 118 GNEQLVVGECDQISLVDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQIKAKKLYRLLGC 177 Query: 241 RGISRSDFLF 250 +G++R DF Sbjct: 178 KGLARIDFFL 187 >gi|307322535|ref|ZP_07601881.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891817|gb|EFN22657.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 332 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 29/287 (10%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVLHGNFGEDGL--VQAILE 73 +AL++ G + + D+ + L P + FN+ G GE V A+LE Sbjct: 37 AALQEGGHETLLCEGDKGLLTTLERFMPTNPQGRPSGIVFNLAEGIQGECRCTHVPAMLE 96 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + +PYT SG L AL++DK+ +K+++ CGVP P+ V R +S + P V+KP Sbjct: 97 MAGVPYTASGPLGHALTLDKVITKRLLRDCGVPT-PNFRVMRRGTESIGDLRFPLVVKPR 155 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 SLG+ ++ + P L Q+ + L+E+Y+DG E+ ++G+ LDV Sbjct: 156 LEDCSLGLQLVHE----PAQLRQAVEAIVTQYKQDALVEEYIDGREIAVALLGNEELDVF 211 Query: 191 EIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + DF E + + + +V PA+I I ++ ++ A +A CR Sbjct: 212 PLV--EHDFGDRETRLMTREAKYVANAMPPQICPAQIGSGIEAVLRDISVAAFRACQCRD 269 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +R D D + F LEIN PG++ S + AGYS L+ Sbjct: 270 YARVDLRVDRFGQP-FVLEINPLPGLSMSSSYVLAGMTAGYSLTSLV 315 >gi|308193610|gb|ADO16336.1| vancomycin resistance protein A [Enterococcus faecium] Length = 225 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 23 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 82 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 83 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 140 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 141 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVPADLSAEER 200 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFL 249 +Q A ++A+GCRG++R D Sbjct: 201 GRIQETAKKIYKALGCRGLARVDMF 225 >gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] Length = 811 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 154/342 (45%), Gaps = 60/342 (17%) Query: 1 MAVLMGGISSEREVSLSSGKAC----ASALEDAGF----------KVSQIDVDRSVGLVL 46 + V+ GG S E +VSL S K AS D + KV+ ID + Sbjct: 454 VGVVCGGQSCEHKVSLLSAKNIIQYLASEYYDVQYFVINRQGLWSKVTAIDAEHDYDKEG 513 Query: 47 AHL----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 H+ D+ +LHG FGEDG +Q LE+++ PY +L SA+SMDK+ + Sbjct: 514 YHVLSSEIAESLANVDVILPILHGPFGEDGTLQGFLEIIDKPYGGPSLLFSAISMDKVMT 573 Query: 97 KQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K++ +S GVPV P L R +++ + P +K GSS+G+ + Sbjct: 574 KRLAASIGVPVVPYQPLTLHAWKRTPDLCMRRILET---FTFPMFVKAAHLGSSIGVFEV 630 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----K 196 ++ + + S ++ + IE+ G IE++C +GDAS I+ P + Sbjct: 631 HNEEELKSKI--SEAFQCDTDIFIEESRLGSREIEVSC--LGDASSSYY-ISEPHERCGE 685 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDP 252 F SYE KY N + L+ KE V+ L ++ I +G R DF D Sbjct: 686 KRFISYEEKY-GFNGKSSAKIQYDLNFSKEAKARVKELTERIYRVIQGKGSCRIDFFLD- 743 Query: 253 LSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + FWL EIN PGMT S F G++F +++ ++ Sbjct: 744 -NEGEFWLSEINPIPGMTESSPFLHDFVRVGWTFEQIMHQLI 784 >gi|293375437|ref|ZP_06621718.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sanguinis PC909] gi|292645990|gb|EFF64019.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sanguinis PC909] Length = 403 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 32/246 (13%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+A V+HG GEDG +Q EL IPY+ + A+A+ DK+ K ++ G+P+ + Sbjct: 101 DVAIPVIHGTNGEDGALQGFFELNGIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYV 160 Query: 112 -------LVN-RFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 N +D+ + +S P ++KP GSS+GI K S+ + ++ S+++ Sbjct: 161 WYYSSDWFANPEACLDAIESKLSYPLMVKPASLGSSVGISKAKDRASLEEAITEAISYDN 220 Query: 163 GDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSS---------- 208 + ++E+ V +E+ C V+GD A V E + +F SY+ KY Sbjct: 221 --KFIVEEMVTQLVEVNCSVIGDFSGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTG 278 Query: 209 -------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ ++PA++ + K VQ LA + +G G++R DFL + + V+ E Sbjct: 279 GTKSQGMASTNRIIPARLTDEGTKYVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNE 338 Query: 262 INVQPG 267 IN PG Sbjct: 339 INTIPG 344 >gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] Length = 411 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 41/280 (14%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ ++HG GEDG +Q LE+L+IPY ++ +A+ DK+ K ++ + G+PVCP Sbjct: 100 DVIVPIMHGTNGEDGTIQGYLEMLKIPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWF 159 Query: 112 LV--NRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + F + H + P V+KP GSS+GI + D+ + + ++ Sbjct: 160 WLYGHEFAQKQEAVLAQVHELGYPVVMKPACLGSSVGITIAHNDEEFIAGVEDARQYD-- 217 Query: 164 DQLLIEQYVDGI-ELTCGVMG---DASLDVTEIAVPKSDFYSYELKY------------- 206 +++++EQ V + E+ C V+G D V E + + S++ KY Sbjct: 218 NKIVVEQMVKNLREINCSVLGSCFDCQASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGG 277 Query: 207 ----------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ ++PA + ++++ LA + +G G+ R DF+ D + Sbjct: 278 VKCGTKSGDGGMASAARIVPAPVDEATTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGM 337 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG ++ + G SF +L+ +V A Sbjct: 338 IYVNEINTIPGSLAYYLWQPV----GVSFTQLMDTLVSQA 373 >gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila psittaci RD1] gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila psittaci 6BC] Length = 810 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 151/340 (44%), Gaps = 57/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S E ++SL S + L + V +DR Sbjct: 454 VGVVCGGKSCEHDISLLSARNVVRYLSPEYYDVQYFIIDRQGLWSKVSTIECEDYEGKGH 513 Query: 41 -----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + L H+ D +LHG FGEDG +Q LE++ PY +L S+++MDK+ Sbjct: 514 YVLSSEITEALTHV--DFILPILHGPFGEDGTLQGFLEIINKPYAGPSLLFSSVTMDKIM 571 Query: 96 SKQVVSSCGVPVCPSILVN-----RFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK 146 +K++ +S GVPV P + R H IS P +K GSS+G+ + Sbjct: 572 TKRLAASVGVPVVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHN 631 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----KSD 198 ++ + + S ++ + + IE+ G IE++C +GD+S I+ P + Sbjct: 632 EEELKAKI--SEAFLYDTDIFIEESRLGSREIEVSC--LGDSS-SCYYISEPHERCGEKR 686 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F SYE KY LN + LD+ +E V+ ++ I +G R DF D Sbjct: 687 FISYEEKY-GLNGRASAQIQYDLDLSEESKIRVKEFTERVYRVIQGQGSCRVDFFLDDEG 745 Query: 255 RKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 FWL E+N PGMT S F A G++F +++ ++ Sbjct: 746 N--FWLSEMNPIPGMTQASPFLHDFARLGWTFEQIIHQLI 783 >gi|124358358|gb|ABN05630.1| vancomycin resistance protein A [Enterococcus faecalis] Length = 268 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 42 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 99 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 100 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 158 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 159 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 217 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + E + S N+ +PA + + +Q A ++A+GCRG++R Sbjct: 218 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLAR 268 >gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] Length = 414 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 87/350 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHLKP----- 51 + V+ GG+S E EVS+ +G A+AL+ +++ + + + G VL L+ Sbjct: 10 VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ LHG GE+G VQ + Sbjct: 70 ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------- 123 E L +PYT SG+L SAL MDK+ SK + G+PV + + Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVM 182 + P V+KP + GSS+GI ++ Q+ LD ++ + +++++E+ + + E+ C V+ Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQA--LDAAIEEAFRYDEKVVVERAIRNLREINCAVL 247 Query: 183 GDAS-----LDVTEIAVPKSDFYSYELKY--------------------SSLNSTHVLPA 217 GD S + + S +++ KY +SL+ ++PA Sbjct: 248 GDPSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLD--RIIPA 305 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + VQ +A Q C G++R DFL D + +V++ EIN PG Sbjct: 306 PLDEAQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG 355 >gi|124358354|gb|ABN05628.1| vancomycin resistance protein A [Enterococcus faecium] gi|124358356|gb|ABN05629.1| vancomycin resistance protein A [Enterococcus faecium] Length = 270 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V ++ + H+ D+AF+ LHG GEDG +Q + EL IP+ Sbjct: 44 CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 101 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 I +SA+ MDK + V + G+ ++N+ + P +KP + GSS G Sbjct: 102 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 160 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200 V K + + LD S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + Sbjct: 161 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 219 Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + E + S N+ +PA + + +Q A ++A+GCRG++R Sbjct: 220 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLAR 270 >gi|57234544|ref|YP_181371.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195] gi|57224992|gb|AAW40049.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195] Length = 338 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 25/297 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76 +A +AL AG V ++ + + K DL FN+ G N+ + + ILE+L+ Sbjct: 34 EAITNALTQAGHTVYRLGGGKEFLRRVQEQKLDLVFNIAEGLGNYRSREAQIPGILEMLD 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPL 133 IPYT S A+ +DK +K++V+ G+ LV + P +KP Sbjct: 94 IPYTGSDPQTLAVCLDKPLTKKLVADAGIKTARWQLVTSCEELSAIDWSGFPLPAFLKPA 153 Query: 134 KGGSSLGIIV------IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 GSS G+ K+ S+ +LL + + +LIE+++ G E+T GV+G+ Sbjct: 154 CEGSSKGVRFASRAGSAKEIVSMAAELLTA----YEQPVLIEEFISGEEITVGVIGNIQP 209 Query: 188 DVTEI--AVPKSD----FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V I VPK+ YS E+K + + +PA +P + +++ A++ +GC Sbjct: 210 KVLGIMRVVPKTKTDYFVYSVEVKRNWRQMVEYEVPAALPAETLSRIEKATLDAYKVLGC 269 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296 R + R DF P F LE+N PG+ PVS P MA+ G S EL+L +++ A Sbjct: 270 RDLCRMDFRVSPDGIPYF-LEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILDTA 325 >gi|158522759|ref|YP_001530629.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] gi|158511585|gb|ABW68552.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] Length = 338 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 29/301 (9%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQ--AILELLE 76 A + L + GF V I+ D + L + DL FN G +G+ Q A+LE+L Sbjct: 35 AMTAHLRECGFDVIPIEADPDAYIKLYENRDSIDLVFNYSIGIYGQARYAQVPAMLEMLR 94 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 +PYT SG L AL +DK R +QV+S+C VPV S + Q ++ P ++KP+ G Sbjct: 95 LPYTGSGPLTQALILDKARMQQVLSACNVPVLCSQVFETGDEPLQSGLAFPLIVKPVAQG 154 Query: 137 SSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 SS GI + +D++ + G+ L++ ++DG E + +MG+ ++ I Sbjct: 155 SSAGITSDSVVRDEAALYRQVGRVMATFGEPALVQPFLDGREFSIPMMGNPP-EIFPIIE 213 Query: 195 PKSDFYSYELKYSSLNSTHV--------------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 P DF Y+ ++S V PA + + + +++ A +A+G Sbjct: 214 P--DFSRLPEGYARIDSLEVKWIFEEQAESHHLICPAPVAPGLQERLEQTVRAAWKALGI 271 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSFRELLLWMVED 295 R D D ++ + +++N PGM P S FP A AG ++ LL ++E Sbjct: 272 CDWCRIDLRCD-MAGTPYVIDVNSPPGMIPPEGSMTSYFPMSARAAGIDYQGLLKRLIET 330 Query: 296 A 296 A Sbjct: 331 A 331 >gi|308193598|gb|ADO16330.1| vancomycin resistance protein A [Enterococcus faecalis] Length = 223 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 25 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 84 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 85 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 142 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 143 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 202 Query: 225 KEVQRLAFLAHQAIGCRGISR 245 +Q A ++A+GCRG++R Sbjct: 203 GRIQETAKKIYKALGCRGLAR 223 >gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] Length = 329 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 40/321 (12%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVDRSVGL 44 +L GG SSE E+SL S L ++ G+ +Q +D++ + L Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLN-TKKL 65 Query: 45 VLAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +L D+ F V +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 66 CSDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + R + + +K + GSS+G + + +++ + Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212 + ++ +Q+L+E+ V EL + L +T E+ P FYSY+ KYSS S+ Sbjct: 184 NDAFGFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSS--SS 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 H L ++ +E +A + + R +SR DF +++ E+N PGM Sbjct: 242 HSLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321 >gi|17902563|emb|CAC84688.1| D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA +DK + + + G+ V Sbjct: 91 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQ 150 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268 Query: 225 KEVQRLAFLAHQAIGCRGISR 245 K VQ A ++ +GCRG++R Sbjct: 269 KRVQETAKKVYRVLGCRGLAR 289 >gi|209162489|gb|ACI39952.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162491|gb|ACI39953.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162493|gb|ACI39954.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162495|gb|ACI39955.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162497|gb|ACI39956.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162503|gb|ACI39959.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162515|gb|ACI39965.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162517|gb|ACI39966.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162519|gb|ACI39967.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162521|gb|ACI39968.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162523|gb|ACI39969.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162525|gb|ACI39970.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162527|gb|ACI39971.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162529|gb|ACI39972.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162531|gb|ACI39973.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162533|gb|ACI39974.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162535|gb|ACI39975.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162537|gb|ACI39976.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162539|gb|ACI39977.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162541|gb|ACI39978.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162543|gb|ACI39979.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162545|gb|ACI39980.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162547|gb|ACI39981.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162549|gb|ACI39982.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162551|gb|ACI39983.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162553|gb|ACI39984.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162555|gb|ACI39985.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162557|gb|ACI39986.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162561|gb|ACI39988.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162573|gb|ACI39994.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162583|gb|ACI39999.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162593|gb|ACI40004.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162597|gb|ACI40006.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162613|gb|ACI40014.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162615|gb|ACI40015.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162617|gb|ACI40016.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162619|gb|ACI40017.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162621|gb|ACI40018.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162623|gb|ACI40019.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162625|gb|ACI40020.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162627|gb|ACI40021.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162629|gb|ACI40022.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162631|gb|ACI40023.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162633|gb|ACI40024.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162635|gb|ACI40025.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162637|gb|ACI40026.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162641|gb|ACI40028.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162643|gb|ACI40029.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162657|gb|ACI40036.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162665|gb|ACI40040.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162667|gb|ACI40041.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162679|gb|ACI40047.1| D-alanine-D-alanine ligase [Clostridium septicum] Length = 184 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQH 122 G VQ++L+ L+IPY+ G L+SAL MDK +K+++ S + + V D Sbjct: 1 GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEINYDKIE 60 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ I K + + + + W++ +++IE+++ G E+TC V Sbjct: 61 EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKGEEITCPVF 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V I PK+DF+ Y KYS + V+ ++ ++KEV+++A ++A+ C Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176 Query: 243 ISRSDFL 249 SR D + Sbjct: 177 YSRIDMI 183 >gi|220921310|ref|YP_002496611.1| D-alanyl-alanine synthetase A [Methylobacterium nodulans ORS 2060] gi|219945916|gb|ACL56308.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060] Length = 378 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 55/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47 +A+L GG S+E EVS+ S A AL+ + V+ I +D+ G + Sbjct: 5 VALLFGGRSAEHEVSILSAGNVARALDPDRYAVTPIAIDKETGAWRLCPALAAGEAPAMG 64 Query: 48 HLKPDLAF-------------------------NVLHGNFGEDGLVQAILELLEIPYTHS 82 P +AF VLHG GEDG VQ L+L +PY S Sbjct: 65 QDGPLVAFLPGGGGRLAILSDAAALSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGG 136 G++ SA +MDK +K+++ G+P+ L + + L S +KP G Sbjct: 125 GVVGSAAAMDKDVAKRLMRDAGLPMIVPFLAATARRPVSYADAAAALESRTLFVKPANMG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM--GDASLDVT--- 190 SS+G+ + D + ++ + +++LIE+ V E+ C V+ + L V+ Sbjct: 185 SSVGVSRVTDPAQ--FDRAAAHAFGYDEKILIERAVPQAREIECAVLETPEGELRVSPPG 242 Query: 191 EIAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EIA + FY Y+ KY + +L PA + ++ LA A A+ C G++R D Sbjct: 243 EIAPAAAHGFYGYDAKYLDPDGAALLIPAALDAARADRMRELAARAFAALACAGLARVDL 302 Query: 249 LFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DP +F E+N PG T +S++P++ AG + L+ Sbjct: 303 FLDPADPAGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALM 344 >gi|313888855|ref|ZP_07822516.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845224|gb|EFR32624.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 390 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 28/245 (11%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 V + K D F LHG FGEDG Q + EL+ +PYT G++++A+ MDK+ ++V S Sbjct: 99 VEVYQKIDAIFFALHGTFGEDGCTQGLFELMGMPYTGCGVMSAAVGMDKVIMRKVFESED 158 Query: 105 VPVCPSILVNRFTMDS-QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P+ R + + + LI P +KP GSS+GI ++ LDL ++ Sbjct: 159 IPMTKYKYFYREELKNLKGLIEKCKDLNFPLFVKPANLGSSIGISRVEN----ALDLSKA 214 Query: 158 -SSWNHGDQLLI--EQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKY----- 206 H D+ +I E V+ E+ V+G D + E + D YE KY Sbjct: 215 LEVAAHYDRKIIVEEAVVNPREINVAVLGYENDLRVSAAEEPLGFKDLLKYEDKYVSGSK 274 Query: 207 ----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 S + LPA++ ++ KE++ LA A AI G++R DFL D K + EI Sbjct: 275 GAKSSQKHQNKKLPAELKPELEKEIKELAKKAFSAIDGAGVARIDFLVD--GDKAYVNEI 332 Query: 263 NVQPG 267 N PG Sbjct: 333 NTLPG 337 >gi|209162465|gb|ACI39940.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162467|gb|ACI39941.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162469|gb|ACI39942.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162471|gb|ACI39943.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162473|gb|ACI39944.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162475|gb|ACI39945.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162477|gb|ACI39946.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162479|gb|ACI39947.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162481|gb|ACI39948.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162483|gb|ACI39949.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162485|gb|ACI39950.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162487|gb|ACI39951.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162499|gb|ACI39957.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162501|gb|ACI39958.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162505|gb|ACI39960.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162507|gb|ACI39961.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162509|gb|ACI39962.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162511|gb|ACI39963.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162513|gb|ACI39964.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162559|gb|ACI39987.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162563|gb|ACI39989.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162565|gb|ACI39990.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162567|gb|ACI39991.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162569|gb|ACI39992.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162571|gb|ACI39993.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162575|gb|ACI39995.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162577|gb|ACI39996.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162579|gb|ACI39997.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162581|gb|ACI39998.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162585|gb|ACI40000.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162587|gb|ACI40001.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162589|gb|ACI40002.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162591|gb|ACI40003.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162595|gb|ACI40005.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162599|gb|ACI40007.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162601|gb|ACI40008.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162603|gb|ACI40009.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162605|gb|ACI40010.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162607|gb|ACI40011.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162609|gb|ACI40012.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162611|gb|ACI40013.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162639|gb|ACI40027.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162645|gb|ACI40030.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162647|gb|ACI40031.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162649|gb|ACI40032.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162651|gb|ACI40033.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162653|gb|ACI40034.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162655|gb|ACI40035.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162659|gb|ACI40037.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162661|gb|ACI40038.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162663|gb|ACI40039.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162669|gb|ACI40042.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162671|gb|ACI40043.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162673|gb|ACI40044.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162675|gb|ACI40045.1| D-alanine-D-alanine ligase [Clostridium septicum] gi|209162677|gb|ACI40046.1| D-alanine-D-alanine ligase [Clostridium septicum] Length = 184 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQH 122 G VQ++L+ L+IPY+ G L+SAL MDK +K+++ S + + V D Sbjct: 1 GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEIDYDKIE 60 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ I K + + + + W++ +++IE+++ G E+TC V Sbjct: 61 EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKGEEITCPVF 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V I PK+DF+ Y KYS + V+ ++ ++KEV+++A ++A+ C Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176 Query: 243 ISRSDFL 249 SR D + Sbjct: 177 YSRIDMI 183 >gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] Length = 318 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 36/312 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156 +P P + + + T S + +K + GSS+G V +DQ P Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS + ++ Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244 Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 VL A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAG 282 +S+FP+M + G Sbjct: 304 ISMFPKMLEHNG 315 >gi|153004284|ref|YP_001378609.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|152027857|gb|ABS25625.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 731 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 14/283 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ + VLA D+ FN+ G G + V A+LELL+I Sbjct: 377 QAIREAIASYGHEVVDLEATTELPFVLAATPVDVVFNIAEGFRGRNRESAVPALLELLDI 436 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S A ++S+DK +K++V + GV +++ +S P ++KP+ G+ Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGVLTPDYAVMHTGKERLPRELSFPLLVKPVAEGT 496 Query: 138 SLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192 S G+ I +D+ ++ + + L+E YV G E T G++G+ L EI Sbjct: 497 SKGVTKKSIVRDELELREVARELIAKYRQPALVEAYVAGREFTVGLLGERRPRVLPPMEI 556 Query: 193 ----AVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + YS+E+K + + +PA++ ++R A A+GCR I+R D Sbjct: 557 VFLDASDPTPIYSFEMKQDWNDKIRYEVPARLSPRELDRLERAARECFTALGCRDIARVD 616 Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289 F D R ++++E N PG+ P S +A AG +R L+ Sbjct: 617 FRMDAEGR-IYFIECNPLPGLAPGWSDLVLIAQAAGIEYRALI 658 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 33/316 (10%) Query: 10 SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63 SE E + + A A+ALE G +V +++V +A L+ PDL FN G G Sbjct: 14 SEEEAEFDTRETVDALAAALERLGHRVERLEVSGPASRTVARLEAFGPDLIFNTAEGRRG 73 Query: 64 E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + A+ + L +PYT S A AL++DK +K V++ GV V Sbjct: 74 RFREAFFPALFDELGMPYTGSDAYALALTLDKQLTKLVLAQHGVATPRWQYVEEARQLQP 133 Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP GSS GI + +D ++++ + + LL+E+++ G ++T Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVEDSLRLHEVVREALRRYPAGLLVEEFIVGRDVTV 193 Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELK-----YSSLNSTHVLPAKIPL 221 + A+ +D A + Y YELK Y S+ + PAK+ Sbjct: 194 PYLEAAAPERHGVLQPVEYVIDEAAAATRRYAIYDYELKTKLDRYVSVRA----PAKLKR 249 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +Q+L ++ +G R + R D +++LEIN P + P + AA Sbjct: 250 SQAERIQQLCETVYRQLGIRDLGRIDLRLGE-DGAIYFLEINALPSLEPGAGIYASAALE 308 Query: 282 GYSFRELLLWMVEDAS 297 G +L ++E A+ Sbjct: 309 GLHADAVLGAVIESAT 324 >gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537] Length = 377 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 154/331 (46%), Gaps = 58/331 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVGLV----- 45 +A++ GG SSE +VS S + +A+ G F ++Q +D D S + Sbjct: 5 VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64 Query: 46 ----------------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 LA +K D+ F V+HGN GEDG +Q + LL P+ + Sbjct: 65 QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124 Query: 83 GILASALSMDKMRSKQVVSSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ G+ V P + N D + + +K G Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S +++ ++LIE+ V G EL GV+G+ V+ I Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY--KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAH 242 Query: 194 -VPKSD----FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ +S +PAK+ ++ +EV+ +A A+Q + RG +R D Sbjct: 243 TVPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMD 302 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277 FL D + +L E N PG T +S+FP + Sbjct: 303 FLLD--ENGIPYLGEPNTLPGFTNMSLFPRL 331 >gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] Length = 377 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 58/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A++ GG SSE +VS S + A+ G F ++Q +D +RS L L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL PY + Sbjct: 66 RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+V+ T + + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+G+ K L S +++ ++LIE V G EL GV+G+ V+EI Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY--KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAH 243 Query: 194 -VPKSD----FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ +S +PA +P + EV+ +A A++ + RG +R D Sbjct: 244 HVPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D V +L E N PG T +S+F + Y+ EL+ +++ Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349 >gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3] gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3] Length = 336 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 48 ---HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 KP D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N++ D +Q + +K GSS+G + D S D+ Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKV-DDSSKVADV 186 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKY--SS 208 L+ ++ + +++E+ + EL V V EI + FY+++ KY SS Sbjct: 187 LK-DAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ +P DI ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|479086|emb|CAA55651.1| vanA2 [Oerskovia turbata] Length = 261 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 9/214 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 48 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 107 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 108 VINKDDRPVAATSTYPVFGKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 165 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 +Q ++A+GCRG++R D R V Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFLQDNGRIVL 259 >gi|258674435|gb|ACV86990.1| vancomycin resistance protein A [Enterococcus faecium] gi|258674437|gb|ACV86991.1| vancomycin resistance protein A [Enterococcus faecium] Length = 214 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 17 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 76 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 77 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 134 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 135 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 194 Query: 225 KEVQRLAFLAHQAIGCRGIS 244 +Q A ++A+GCRG++ Sbjct: 195 GRIQETAKKIYKALGCRGLA 214 >gi|258674439|gb|ACV86992.1| vancomycin resistance protein A [Enterococcus faecium] gi|258674441|gb|ACV86993.1| vancomycin resistance protein A [Enterococcus faecium] gi|258674443|gb|ACV86994.1| vancomycin resistance protein A [Enterococcus faecium] Length = 216 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 19 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 78 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 79 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 136 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 137 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 196 Query: 225 KEVQRLAFLAHQAIGCRGIS 244 +Q A ++A+GCRG++ Sbjct: 197 GRIQETAKKIYKALGCRGLA 216 >gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] Length = 810 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 57/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S E ++S+ S K L + + +DR Sbjct: 454 VGVVCGGKSCEHDISVLSAKNVVRYLSPEYYDIQYFIIDRQGLWSKVSTIECEDYEGKGY 513 Query: 41 -----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + L HL D +LHG FGEDG +Q LE++ PY +L S+++MDK+ Sbjct: 514 HVLSSEITEALIHL--DFILPILHGPFGEDGTLQGFLEIINQPYAGPSLLFSSVTMDKIM 571 Query: 96 SKQVVSSCGVPVCP----SILVNRFTMD-SQHLISP----PYVIKPLKGGSSLGIIVIKK 146 +K++ +S GVPV P ++ + T + H I+ P +K GSS+G+ + Sbjct: 572 TKRLAASVGVPVVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHN 631 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----KSD 198 ++ + + S ++ + + IE+ G IE++C +GD+S I+ P + Sbjct: 632 EEELKAKI--SEAFLYDTDIFIEESRLGSREIEVSC--LGDSS-SCYYISEPHERCGEKR 686 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F SYE KY LN + LD+ +E V+ L ++ I +G R DF D Sbjct: 687 FISYEDKY-GLNGRTSAQIQYDLDLSEELKIRVKELTERMYRVIQGQGSCRVDFFLDDEG 745 Query: 255 RKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 FWL E+N PGMT S F G++F +++ ++ Sbjct: 746 N--FWLSEMNPIPGMTKASPFLHDFVRLGWTFEQVIHQLI 783 >gi|268323535|emb|CBH37123.1| putative D-alanine--D-alanine ligase [uncultured archaeon] gi|268323656|emb|CBH37244.1| putative D-alanine--D-alanine ligase [uncultured archaeon] Length = 339 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 132/270 (48%), Gaps = 33/270 (12%) Query: 52 DLAFNVLHGNFGE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D+ FN+ G GE + + AI ++LEIPYT SG+L L ++K+R+K+++ G+P P Sbjct: 67 DIVFNIAEGLRGESRESYIPAICDMLEIPYTGSGVLTLGLCLNKVRTKEILRYYGIPT-P 125 Query: 110 SILVNRF---TMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSW-- 160 + R +D + + P ++K L GS +G+ IV ++ DL ++ Sbjct: 126 DFWLFRSKNEKLDLELELKFPLIVKLLHEGSQMGLSSDSIVCSEE-----DLRDRVAYLM 180 Query: 161 -NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTE----------IAVPKSDFYSYELKY 206 +G+ +++E+++DG E T G++G+ L + E + P + K Sbjct: 181 HEYGEPVIVEEFLDGREFTVGILGNEKPIILPIVEALFEEGQKMRLFTPDKPLLPFIPKG 240 Query: 207 SSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 ++N V PA + D+ E++ +A A++A+ CR R D LE+N Sbjct: 241 VAINLKERSVCPADVDEDLRSEIEEIALNAYRALDCRDWCRIDLRMTRDGDIPNVLELNP 300 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+ P + P A AG S++ L+ ++E Sbjct: 301 IAGIDPSYLLPRAAKAAGISYKRLINMILE 330 >gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 331 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + G+P P + Sbjct: 77 DFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYL 136 Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + +S L + +K + GSS+G + + + + ++ ++H Q Sbjct: 137 FLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAIDKAFGFSH--Q 194 Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKI 219 +L+E+ V EL + L ++ EI P FYSY+ KYS S + T V + Sbjct: 195 VLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNL 254 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +Q+ + + + R +SR DF +++ E+N PGMT +S+FP+M Sbjct: 255 TEQQLATIQQCSEKVFRQMNLRHLSRIDFFLTS-EGEIYLNEVNTFPGMTKISMFPKMLQ 313 Query: 280 YAGYSFRELLLWMVE 294 + G+ F E L +E Sbjct: 314 HNGHKFHEFLADCIE 328 >gi|219685886|ref|ZP_03540692.1| D-alanine--D-alanine ligase [Borrelia garinii Far04] gi|219672585|gb|EED29618.1| D-alanine--D-alanine ligase [Borrelia garinii Far04] Length = 287 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 50/284 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44 + ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 5 LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64 Query: 45 --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 VL +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ S Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138 A+S +K K ++ S +P+ P I + + +D + + + P ++KP GSS Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195 +GI V + I + + + +LIE++++ E+ C V+G+ + + EI V Sbjct: 185 IGINVAYSESQI--EFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQ 242 Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQ 236 FY Y+ KYS + + +PA++ + ++ AFL ++ Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYK 286 >gi|326693128|ref|ZP_08230133.1| D-alanyl-alanine synthetase A [Leuconostoc argentinum KCTC 3773] Length = 377 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/335 (27%), Positives = 152/335 (45%), Gaps = 58/335 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49 +A+L GG SSE +VS S + A+E +G F ++Q +D + S L L Sbjct: 6 VALLFGGNSSEHDVSKRSAQNYYQAIEASGKYDITVFAIAQNGYFLDPESSKRVLALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + LL P+ + Sbjct: 66 QPIVDAFMAKVDTTDPLARISALREAGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGG 136 + A+S DK +K++++ + ++++ T +K G Sbjct: 126 PLRGHAVSFDKAMTKELLTVNNIRNTNYVVLDEKTAKDWTWDKVVATFGDVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI--- 192 SS+GI + L S +++ ++L+EQ V G EL GV+G+ V+EI Sbjct: 186 SSVGISRATTAEEFAAALADSFQYDY--KVLVEQAVKGPRELEVGVIGNDEPLVSEIGAH 243 Query: 193 AVPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 AVP +Y Y K+ ++ +PAK+P I +EV+ +A A++ + RG +R D Sbjct: 244 AVPNQGDGDGWYDYNNKFVDNSAVEFEIPAKLPDAITQEVKDMALKAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281 FL D V +L E N PG T +S+F + Y+ Sbjct: 304 FLLD--ENDVPYLGEPNTLPGFTNMSLFKRLWDYS 336 >gi|325919672|ref|ZP_08181675.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325549835|gb|EGD20686.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 198 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P ++KP GSS+GI + + ++ ++ ++ LL+EQ ++G ELT V+G Sbjct: 29 IGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQLIEGDELTVAVLG 86 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +L I VPK +Y Y KY + ++ ++ P + D ++++LA A +A G RG Sbjct: 87 EVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLALDAFRAAGARGW 144 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 145 GRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 193 >gi|268609111|ref|ZP_06142838.1| D-alanine--D-alanine ligase [Ruminococcus flavefaciens FD-1] Length = 357 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 15/258 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 K D+ F V+ G G DG +Q +L+L IPY G+LA+A MDK V+ + Sbjct: 96 KIDVVFPVVMGKHGADGTIQGLLDLSGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATAD 155 Query: 110 -SILVNR--FTMDSQ-HLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 I+ R +D + H I+ P ++KP K G+S G K D L +++ Sbjct: 156 WRIITQREISEIDKRCHEIAGELGFPLIVKPAKSGTSAG--TGKADDLAQLIAAVKVAFS 213 Query: 162 HGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +++++E+YV G ++ V G S + EI P + E+ S+ + + PA Sbjct: 214 NDNKVVVEKYVSGRKMEAAVFGYDTPFSTYIGEILDPDRVYDPTEVNQSTGDGLKI-PAD 272 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I ++ ++ A A++A+GC+G++R DF R + +I PG+ S+FP++ Sbjct: 273 ISDELQASIRETAVKAYKAMGCKGLARLDFFLTDDGR-LLLNKIGTSPGLRKNSVFPKLM 331 Query: 279 AYAGYSFRELLLWMVEDA 296 + G S + + ++E A Sbjct: 332 EHMGISHEDFVDMLLEQA 349 >gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6] gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6] Length = 331 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 15/255 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + G+P P + Sbjct: 77 DFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYL 136 Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + +S L + +K + GSS+G + K + + + ++ ++H Q Sbjct: 137 FLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAIDKAFGFSH--Q 194 Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKI 219 +L+E+ V EL + L ++ EI P FYSY+ KYS S + T V + Sbjct: 195 VLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNL 254 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +Q + + + R +SR DF F +++ E+N PGMT +S+FP+M Sbjct: 255 TEQQLATIQLCSEKVFRQMNLRHLSRIDF-FLTSEGEIYLNEVNTFPGMTKISMFPKMLQ 313 Query: 280 YAGYSFRELLLWMVE 294 + G+ F E L +E Sbjct: 314 HNGHKFHEFLADCIE 328 >gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae CWL029] gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49 + ++ GG S E ++SL S + + + + VS ++R G HL Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY + +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N Q+LI S P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203 + + ++ ++ D + E + E+ +G +S +A P S F Y+ Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691 Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 KY + L + +E V+ LA ++A+ +G +R DF D +W Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F + +AG++ +++ + DA Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786 >gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238] gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238] Length = 343 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/323 (26%), Positives = 148/323 (45%), Gaps = 43/323 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD---------------RSVGLVL 46 +L GG +E EVSL S A L + F+++ +++ RS +L Sbjct: 19 LLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKTLL 78 Query: 47 AHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 + + D +HG GE G +Q++L++ IPY AS S +K+ SK + Sbjct: 79 CNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWYDA 138 Query: 103 CGVPVCPSILV--NRFTMDSQHLIS----PPYVIKPLKGGSSLGII-VIKKDQSIPLDLL 155 +P P + + N T + L++ +K GSS+G V K+Q + Sbjct: 139 LSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVE---A 195 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLN 210 ++++ + +Q+L+E+ V EL D L T E+ P FY+YE KY S + Sbjct: 196 VNNAFTYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGSH 255 Query: 211 STHVLPAKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ST L AK +++ + R F + + +SR DF +++ E+N P Sbjct: 256 STTTLDAKNLTEEQIELINKYSRKVF---TQMKLKDLSRIDFFLTD-ENEIYLNEVNTFP 311 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 GMTP+S+FP++ + G+ F+ L Sbjct: 312 GMTPISMFPKLLEHNGHCFKTFL 334 >gi|301513415|ref|ZP_07238652.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058] gi|301596388|ref|ZP_07241396.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059] Length = 137 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 4/118 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D +RSV ++ + D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTELVNY---DRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET 124 >gi|302672145|ref|YP_003832105.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316] gi|302396618|gb|ADL35523.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316] Length = 401 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 39/249 (15%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109 D+AF ++HG EDG +Q L L +P +L+SA+ M+K K V+ G+PV C Sbjct: 101 DIAFPIVHGTNVEDGTLQGYLATLGLPVVGCDVLSSAVGMNKYVMKTVLKDNGIPVLDCK 160 Query: 110 SIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWN 161 VN + P +IKPL GSS+GI ++ LDL + Sbjct: 161 CYTWKDYEDVNALVEKIEAAFEYPVIIKPLNLGSSIGIKKASDRDALIEALDL----GFE 216 Query: 162 HGDQLLIEQYV-DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKY----------- 206 ++L+E + D E+ C V+GD A E V D S+E KY Sbjct: 217 FSKKILVEPAISDLKEINCSVIGDYENAKASECEEPVNSDDILSFEDKYIGGAKGSAKGA 276 Query: 207 --------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 +SL +PA+I + +E++ +A A + +GC GISR DF+ D + KV+ Sbjct: 277 KTGGSKGMASLKRK--IPAEITPERREEIRTMAVDAFKCLGCSGISRIDFMIDKKTDKVY 334 Query: 259 WLEINVQPG 267 EIN PG Sbjct: 335 LNEINTIPG 343 >gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 809 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49 + ++ GG S E ++SL S + + + + VS ++R G HL Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY + +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N Q+LI S P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203 + + ++ ++ D + E + E+ +G +S +A P S F Y+ Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691 Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 KY + L + +E V+ LA ++A+ +G +R DF D +W Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F + +AG++ +++ + DA Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQVVDHFIIDA 786 >gi|325921424|ref|ZP_08183280.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325548066|gb|EGD19064.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 199 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 5/170 (2%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P ++KP GSS+GI + + ++ ++ ++ LL+EQ ++G ELT V+G Sbjct: 30 IGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQLIEGDELTVAVLG 87 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +L I VPK +Y Y KY + ++ ++ P + D ++++LA A +A G RG Sbjct: 88 EVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLALDAFRAAGARGW 145 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R D + D S +++ LE+N PGMT S+ P+ A G F E L+W V Sbjct: 146 GRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 194 >gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] Length = 330 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 35/314 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALE------------------DAGFKVSQIDVDRSVGL 44 +L GG S+E EVSL S L+ D+ + Q+++DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157 +P P + ++ + L + + IK GSS+G V KD+ L + Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDE---LAEAVN 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASL--DVTEIAVPKSDFYSYELKYS--SLNS 211 +++ + +Q+LIE+ + EL GD + E+A P+ FYSYE KYS S + Sbjct: 185 NAFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSV 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 245 TTVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSF 285 S+FP+M + G+SF Sbjct: 304 SMFPKMLEHHGHSF 317 >gi|283468531|emb|CAP18811.1| putative D-ala D-ala ligase [Opitutus terrae PB90-1] Length = 241 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 14/232 (6%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 +Q +L+ + Y ++SAL+MDK +K+ ++ G+ V P + + Sbjct: 2 MQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRPEQVIEQ 61 Query: 128 Y----VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + V+KP GSS+G+ ++ + + LD++Q+ W +IE+ + G EL GV Sbjct: 62 FGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQNGRW------IIERRIFGRELAVGV 115 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + ++ V EI PKS Y Y KY+ + ++ PA + + +++Q A A A GCR Sbjct: 116 LNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCR 174 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +R DF+ +++ LEIN PGM S P A G F L+ MV Sbjct: 175 DYARVDFILGD-DHELYLLEINTHPGMKETSQLPMSARCEGIDFTALVKAMV 225 >gi|289432514|ref|YP_003462387.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT] gi|288946234|gb|ADC73931.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT] Length = 338 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 19/294 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76 +A +AL AG V ++ + + K DL FN+ G N+ + + +LE+L+ Sbjct: 34 EAITNALTAAGHAVYRLGGGKEFLRKVQEHKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 IPYT S A+ +DK +K++V+ GV LV+ T+D P + +KP Sbjct: 94 IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 GSS G+ + +S + ++ + +L+E++++G E+T GV+G+ V Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212 Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 I VPK+ D+ YS E+K + + +PA +P +++ A++ + C + Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLAHIEKATLDAYRVLECHDL 272 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296 R DF P ++LE+N PG+ PVS P MA+ G S +L+L ++ A Sbjct: 273 CRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILNTA 325 >gi|229826927|ref|ZP_04452996.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC 49176] gi|229788545|gb|EEP24659.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC 49176] Length = 174 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 4/168 (2%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P ++KP G SS+G+ + Q L+++ S+ +Q+++EQ++ G E + V+ + Sbjct: 4 PVIVKPCCGDSSVGVCIAHNQQEYKAALMEAFSYE--NQVVVEQFITGREFSVAVVDGKA 61 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V EIA P FY Y+ KYS+ + PA + + KE+Q A ++A+ + +R Sbjct: 62 YPVVEIA-PLEGFYDYKNKYSAGSCVETCPADLSASLTKEMQMYAEKGYEALNLQAYARL 120 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 DFL + ++ LE N PGMTP S+ P+ A G ++ +L ++E Sbjct: 121 DFLMEE-DGSMYCLEANTLPGMTPTSLIPQEARVIGMNYPQLCEKLIE 167 >gi|224368436|ref|YP_002602599.1| DdlB2 [Desulfobacterium autotrophicum HRM2] gi|223691152|gb|ACN14435.1| DdlB2 [Desulfobacterium autotrophicum HRM2] Length = 332 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 21/299 (7%) Query: 15 SLSSGKACASALEDAGFKVSQI-DVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQA 70 S+ + +A + L+ G + +I + R ++ + DL FN+ LHG G + + A Sbjct: 28 SVETIEAIETTLQGLGHETRRIGNAIRLTERLVQGERWDLVFNIAEGLHG-IGREAQIPA 86 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYV 129 IL+L IPYT S + A+++ K +K ++ G+ + N D+ +L PP+ Sbjct: 87 ILDLYNIPYTFSDPMVMAVTLHKGMTKHIIRDAGLATADFKVANS-ARDAWNLPFDPPFF 145 Query: 130 IKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184 +KP+ G+ +GI ++K +P + Q +LIE+++ G E T G++G Sbjct: 146 VKPVAEGTGMGITAKSLVKNALDLP-GVCQELVEQFHQPVLIEEFLTGREFTVGIVGTGT 204 Query: 185 -----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 ++++ I+ K + YS+E K + LP D + + V+ LA A + + Sbjct: 205 RAQVMGTMEIIVISSKKDEVYSFENKEGWKSKVQYLPLSPGTDPLIQAVEDLALSAWKVL 264 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 GCR R D D R F +E+N G+ P S P + + G S+ +L+ ++E A Sbjct: 265 GCRDGGRIDIRCDAAGRPSF-IEVNPLAGLRPEYSDLPIVCQFFGTSYVQLIELILESA 322 >gi|323144949|ref|ZP_08079509.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei YIT 12066] gi|322415228|gb|EFY06002.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei YIT 12066] Length = 331 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 +HG GE G +Q+ LE+ IPY AS +K+ +K +++ +P P ++V R Sbjct: 79 IHGVPGETGDIQSFLEIFNIPYIGCKSEASHNCFNKITTKLYLTALNIPNTPFLIVPRQD 138 Query: 118 MDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S+ + +K GSS+G + K + + ++++ +++ + ++IE+ Sbjct: 139 ELSKANALKAFDSWQDVYVKAASQGSSIGCYHVTKKEDLWDSVVEAFTFS--EDVIIEKT 196 Query: 172 VDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYK 225 + EL C D ++ +T EI +P + FY+++ KYS S + T V P + +I + Sbjct: 197 IKHRELECAAYEIDGNIYITNPGEIIMPDNLFYTFDEKYSKDSGSVTTVEPQNLSDEIKQ 256 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ A A+ + R +SR DF ++ EIN PGMTP+S+FP++ + G+ Sbjct: 257 MIRDYARKAYLGLKLRDLSRIDFFLSD-HNEIIINEINTFPGMTPISMFPKLLEHNGHQM 315 Query: 286 RELLLWMVEDAS 297 E L +E A+ Sbjct: 316 TEFLRQAIERAA 327 >gi|212635560|ref|YP_002312085.1| D-alanyl-alanine synthetase A [Shewanella piezotolerans WP3] gi|226729272|sp|B8CMV8|DDL_SHEPW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|212557044|gb|ACJ29498.1| D-alanine--D-alanine ligase [Shewanella piezotolerans WP3] Length = 332 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 20/253 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D A +HG GE G +Q+ EL+ +PY AS +K+ +K S+ +P P + Sbjct: 79 DFAIPCIHGFPGETGDIQSYFELINLPYFGCKAEASRNCFNKITAKMWFSALNIPNTPYL 138 Query: 112 LVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N + S + V +K GSS+G I + + L Q ++ + D Sbjct: 139 FLNEMSDVSIEQATNALVNWGSIFVKAASQGSSVGCYRIDNQEDVASTLAQ--AFTYSDY 196 Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +++E+ + EL V D + T E+ ++FY+++ KY++ + ++ Sbjct: 197 VIVEKTISARELEVAVYEIDGEIVATVPGEVICSSNNFYTFDEKYAANSKAQT---QVVA 253 Query: 222 DIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 DI KEV L A A + + R +SR DF +V EIN PG+TP+S+FP+M Sbjct: 254 DISKEVSDLIRQYAISAFKGMKLRHLSRIDFFLTD-DGEVLLNEINTFPGLTPISMFPKM 312 Query: 278 AAYAGYSFRELLL 290 G+SF + LL Sbjct: 313 LQNHGHSFPDYLL 325 >gi|282897350|ref|ZP_06305352.1| D-ala D-ala ligase [Raphidiopsis brookii D9] gi|281198002|gb|EFA72896.1| D-ala D-ala ligase [Raphidiopsis brookii D9] Length = 336 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE--DGLVQAILELLEIPYT 80 + L D G +V +I + L + + DL FN+ G G + V A+ EL + YT Sbjct: 39 NTLNDLGHQVERIGNGGELTRKLVNGDRWDLVFNIAEGIKGRSREAQVPAVCELFDQAYT 98 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 S L AL++DK +K++V G+P P I++N + + P KPL GSS G Sbjct: 99 FSDPLTCALTLDKALTKRIVRDRGLPTAPFIVINNIVEIANINLPLPLFCKPLSEGSSKG 158 Query: 141 II--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTE 191 I + KD++ ++ Q+ +L+E ++ G E+T G++G+ S ++V Sbjct: 159 ITGQSLVKDKAELFNICQTLYNQFQQPILVETFLPGREITVGIIGNGSQAKVVGIMEVIF 218 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 ++D Y+ K L+ P + + ++LA + +GCR +R D D Sbjct: 219 TDKAETDSYTTLNKQEYLDRIAYQLITNPEPLAIQAEQLALEVYYLLGCRDAARLDLRCD 278 Query: 252 PLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 + + +LEIN PG+ + S P M AG S+ E++ +V+ A Sbjct: 279 A-NGVLHFLEINPLPGLDYIYSDLPIMGRLAGISYTEMVNAIVDAA 323 >gi|147669247|ref|YP_001214065.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1] gi|146270195|gb|ABQ17187.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1] Length = 338 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76 +A +AL AG V ++ + + K DL FN+ G N+ + + +LE+L+ Sbjct: 34 EAITNALTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 IPYT S A+ +DK +K++V+ GV LV+ T+D P + +KP Sbjct: 94 IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 GSS G+ + +S + ++ + +L+E++++G E+T GV+G+ V Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212 Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 I VPK+ D+ YS E+K + + +PA +P +++ A++ + C + Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAYRVLECHDL 272 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296 R DF P ++LE+N PG+ PVS P MA+ G S +L L ++ A Sbjct: 273 CRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLALEILNTA 325 >gi|283781146|ref|YP_003371901.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068] gi|283439599|gb|ADB18041.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068] Length = 342 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 128/261 (49%), Gaps = 34/261 (13%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DL N+ G G + V AIL++ IPYT S L +L++ K +KQV+++ G+P P Sbjct: 66 DLVLNIAEGIEGMGREAQVPAILDVYGIPYTFSDPLVMSLTLHKGLTKQVLAAAGLPTAP 125 Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQS------IPLDLLQSSSWNH 162 ++++ D + L P P KP+ G+S G+ + K S I LL+ H Sbjct: 126 FAVISKLE-DLEGLTLPYPLFAKPIAEGTSKGVTSLSKVTSPEALRAICEHLLR----EH 180 Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTH----- 213 +L+E Y+DG E T G++G+ L EI + +SD S ++ Y+ N + Sbjct: 181 QQSVLVETYLDGREFTTGLLGEGVSTRVLGSLEIKL-RSD--SDQVGYTYRNKENCEELI 237 Query: 214 ----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + PA PL KEV+ L+ + +GCR R D D L K + LE+N G+ Sbjct: 238 IYDLIRPADDPL--VKEVEALSLATWKTLGCRDAGRVDIRCDSLG-KPYLLEVNPLAGLH 294 Query: 270 PV-SIFPEMAAYAGYSFRELL 289 P S P +A G ++ EL+ Sbjct: 295 PEHSDLPMLATKIGMTYTELI 315 >gi|73748467|ref|YP_307706.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1] gi|73660183|emb|CAI82790.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1] Length = 338 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76 +A ++L AG V ++ + + K DL FN+ G N+ + + +LE+L+ Sbjct: 34 EAITNSLTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 IPYT S A+ +DK +K++V+ GV LV+ T+D P + +KP Sbjct: 94 IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 GSS G+ + +S + ++ + +L+E++++G E+T GV+G+ V Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212 Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 I VPK+ D+ YS E+K + + +PA +P +++ A++ + C + Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAYRVLECHDL 272 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296 R DF P F LE+N PG+ PVS P MA+ G S +L+L ++ A Sbjct: 273 CRMDFRVSPDGTPYF-LEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILNTA 325 >gi|327485602|gb|AEA80008.1| D-alanine--D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 305 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 55/321 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51 +L GG SSE E+SL S LE F V ++++ + S L +L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T S + +K + GSS+G + + Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTE---------V 178 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLP 216 S++ +L I + E+ P+ FYSYE KYS + ++ VL Sbjct: 179 SAYEMNGKLYISK------------------PGEVIAPEGTFYSYEEKYSANSHARTVLE 220 Query: 217 AKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A+ + +KE +Q A + R +SR DF F +++ E+N PGMTP+S+FP Sbjct: 221 AENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTPISMFP 279 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 +M + G+ F E L+ V + Sbjct: 280 KMLEHNGHRFSEFLVQCVTNT 300 >gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016] gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016] Length = 331 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 36/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL---EDAGFKVSQID----VDRSVGLVL--AHLKP-- 51 +L GG SSE E+SL S + L E+ +I D+ LV H K Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66 Query: 52 --------DLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D+ F V +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 67 SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + +S L + +K + GSS+G + + + + Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209 ++ ++H Q+L+E+ V EL + L ++ EI P FYSY+ KYS S Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTS-EGEIYLNEVNTFPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M + G+ F E L +E Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIE 328 >gi|269104486|ref|ZP_06157182.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161126|gb|EEZ39623.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 287 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 23/286 (8%) Query: 28 DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +A + Q+++DR++ + +HG GE G +Q+ L++ +PY G AS Sbjct: 8 NANNALCQLNLDRTLQTGDTKQIINYVIPCVHGFPGETGDLQSFLDMAGLPYLGCGAEAS 67 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGI 141 +K+ +K + +P P + ++ D+ S + +K GSS+G Sbjct: 68 RNCFNKITTKLWFDALDIPNTPYVFLSENNEDAHTKASEAFDKWGKVFVKAASQGSSVGC 127 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPK 196 + + L + + ++ + DQ+LIE+ + EL GD L +T E++ P Sbjct: 128 YSVTDKAN--LAAVVNDAFGYSDQVLIEKSIKPRELEIAAYQYGD-ELIITKPGEVSCPD 184 Query: 197 SDFYSYELKYSS-LNSTHVLPA----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 FYSYE KYSS +ST + A + ++ +E R AF+ H + + +SR DF Sbjct: 185 DKFYSYEEKYSSDSHSTTAVEATNLSEEQVEALRECARKAFV-HMKL--KDLSRIDFFLS 241 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 ++ EIN PGMTP+S+FP+M G+SF + + ++ A+ Sbjct: 242 E-DNEILLNEINTFPGMTPISMFPKMLENHGHSFTKFIEQAIKSAA 286 >gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9] gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9] Length = 330 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE------------------DAGFKVSQIDVDRSVGL 44 +L GG S+E EVSL S L+ DA + Q+++DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157 +P P I ++ + L + + +K GSS+G V KD+ L + Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDE---LAEAVN 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASL--DVTEIAVPKSDFYSYELKYS--SLNS 211 +++ + +Q+LIE+ + EL GD + E+A P+ FYSYE KYS S + Sbjct: 185 NAFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSV 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 245 TTVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297 S+FP+M + G+SF + ++ A+ Sbjct: 304 SMFPKMLEHHGHSFAGFIETAIKTAA 329 >gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae TW-183] gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae TW-183] Length = 809 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 47/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49 + ++ GG S E ++SL S + + + + VS ++R G HL Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSPSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N Q+LI S P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203 + + ++ ++ D + E + E+ +G +S +A P S F Y+ Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691 Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 KY + L + +E V+ LA ++A+ +G +R DF D +W Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F + +AG++ +++ + DA Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786 >gi|126656685|ref|ZP_01727899.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110] gi|126621905|gb|EAZ92613.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110] Length = 340 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 29/261 (11%) Query: 57 VLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 VL F G+ Q ++ +LL IPY + AL+ +K ++K +V S GV V L++ Sbjct: 86 VLPQMFCIPGMTQYRSLFDLLNIPYLGNTAELMALTANKAKAKAIVRSMGVKVPYGELLH 145 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + D+ +L PP VIKP +SLG+ ++K D ++ + DQ+L+E+Y++ Sbjct: 146 K--GDTPNL-RPPVVIKPDNSDNSLGVTLVKTMDEC--DTALEKAFEYADQVLVEEYIEL 200 Query: 174 GIELTCGVMGDA----SLDVTEIAV--------------PKSDFYSYELKYSSLNSTHVL 215 G E+ CG + SL + E AV K D S EL Y++ + Sbjct: 201 GREVRCGTIVKEGELISLPLEEYAVNTENNPIRNHEDKLKKDD--SGELTYAAKDKKKAW 258 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + + VQ +A HQA+GCR S DF DP + F LE + +P S+ P Sbjct: 259 IVDSNNPVTRRVQEIAKQCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVIP 317 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 MA G S ELL ++++A Sbjct: 318 MMAQAKGISLNELLEIVIKEA 338 >gi|307322893|ref|ZP_07602187.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891461|gb|EFN22353.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 321 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 27/302 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S+ER SL + A L+ V +D D L+ A + D NV++G Sbjct: 19 LVLLAGGSSTERGGSLETKNALLPYLQKLCRSVEVVDPDEVDHLLSAVRQCDFVLNVVYG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVNRF 116 GEDG +Q L+ L +PY+ +LASA+ M+K ++ + G PV + L + Sbjct: 79 AGGEDGRIQGFLDTLRVPYSGPSVLASAIGMNKEVFVALLRAWGYPVPYGRLATTLEDPR 138 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 T + S V+KP+ GSSLGI ++ + + Q + + +E++++G Sbjct: 139 TWPRELQQSKVLVLKPIDEGSSLGIKMLDGQAASAEAISQIEPCDRS-RWRLEEFIEGAS 197 Query: 177 LTCG--------VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 T G V+GDA + +P F+ +LK + PA + V Sbjct: 198 GTVGIFQVGPEFVIGDAVV----FDIPDGRRFFDDQLKIRPKSRILHGPAA------ERV 247 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + A +Q + C+G+ R DF++ +LE+N PG+ P S P ++ + +SF + Sbjct: 248 RNDALTLYQQLNCKGLVRLDFIYR--DSAPVYLEVNTIPGLHPDSTAP-LSFQSRFSFED 304 Query: 288 LL 289 L Sbjct: 305 FL 306 >gi|310821816|ref|YP_003954174.1| d-alanine-d-alanine ligase family protein [Stigmatella aurantiaca DW4/3-1] gi|309394888|gb|ADO72347.1| D-alanine-D-alanine ligase family protein [Stigmatella aurantiaca DW4/3-1] Length = 725 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 144/285 (50%), Gaps = 18/285 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ ++ + VLA D+ FN+ G G + V A+LELL+I Sbjct: 378 QAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQVPAMLELLDI 437 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S ++++DK +K++V G+ P +L + ++ P ++KP+ Sbjct: 438 PYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTF--PLMVKPVAE 495 Query: 136 GSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190 GSS G++ + ++ ++++ + + L+E+Y+ G E T G++G+ L Sbjct: 496 GSSKGVVSKSVCHSEAELREVVKEIASKYKQPALVEEYIGGREFTVGLLGERRPRVLPPM 555 Query: 191 EIAV----PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 EI K+ YS++ K + + PAK+ + + ++ A + A+GCR ++R Sbjct: 556 EIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRAAARGSFMALGCRDVAR 615 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289 DF D R ++++E N PG+TP S +A AG +R L+ Sbjct: 616 IDFRMDDKGR-LYFIECNPLPGLTPGWSDLVLIAQGAGMDYRTLI 659 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 26/273 (9%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75 A A A+E G ++ + +V +A L+ PDL FN G G + A+ + L Sbjct: 28 ALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S A A+++DK +K +++ G+ V + + + + P ++KP Sbjct: 88 GFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNFE 147 Query: 136 GSSLGII---VIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 GSS GI + + + + Q+ + + G +L+E+Y+ G +LT + D Sbjct: 148 GSSKGITQDSIAETLDEVRAKVTQALAKYPAG--VLVEEYIGGKDLTVPFLAAVDNDYDG 205 Query: 192 IAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 + P K Y YELK ++ V PA I ++V+++A Q Sbjct: 206 VLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQV 265 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + CR + R DF F LEIN P + P Sbjct: 266 LDCRDLGRIDFRLSDAGVPYF-LEINALPSLEP 297 >gi|108757010|ref|YP_632275.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK 1622] gi|108460890|gb|ABF86075.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK 1622] Length = 729 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 16/265 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ + VL+ D+ FN+ G G + V A+LELL+I Sbjct: 380 QAIREAIASWGHEVIDLEATAELPSVLSSTPLDVVFNIAEGFKGRNRESQVPALLELLDI 439 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S ++++DK +K++V G+ + P+ ++ ++ S P ++KP+ Sbjct: 440 PYTGSDPATLSIALDKGLAKKIVRQAGI-LTPNFQLMATGKERLNKEFTSFPLIVKPVAE 498 Query: 136 GSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190 GSS G++ + ++ ++++ + + LIE+Y+ G E T G++G+ L Sbjct: 499 GSSKGVVTKSVCHSEAELREVVREIAGKYQQPALIEEYIRGREFTVGLLGERRPRVLPPM 558 Query: 191 EIAV----PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 EI K+ YS++ K + + PAK+ + + ++ A + A+GCR ++R Sbjct: 559 EIVFLDREEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRTAARNSFMALGCRDVAR 618 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP 270 DF D R ++++E N PG+TP Sbjct: 619 IDFRMDDKGR-IYFIECNPLPGLTP 642 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 30/275 (10%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75 A A+A+E G ++ + +V +A L+ PDL FN G G + A+ + L Sbjct: 28 ALAAAIERIGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S A A+++DK +K V+S G+ V + + S + P ++KP Sbjct: 88 GFPYTGSDAYALAVTLDKQLTKLVLSKQGIRTPGWQYVEKLSELSAENLRFPVIVKPNFE 147 Query: 136 GSSLGIIVIKKDQSIPLDL------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 GSS GI SI L + ++ + +L+E+Y+ G +L + D Sbjct: 148 GSSKGI----SQDSIAETLDEVRAKVAAALEKYPSGVLVEEYISGRDLAVPFLESVDNDY 203 Query: 190 TEIAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAH 235 + P K Y Y LK S + V PA+IP ++V+R+A + Sbjct: 204 DGVLSPVEYVIDPAVTQGRKYAIYDYALKTSREGTVSVRAPAQIPPRTAEDVRRMAQKVY 263 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +A+ CR + R D F LEIN P + P Sbjct: 264 RALDCRDLGRIDVRLSDAGVPYF-LEINALPSLEP 297 >gi|290646|gb|AAA24785.1| vanB2 ORF [Enterococcus faecalis] Length = 210 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 10/213 (4%) Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG +Q + EL IPY I +SA MDK + + + G+ V ++++ Sbjct: 1 EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGA 60 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ + G E+ C VMG Sbjct: 61 LTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMG 118 Query: 184 DAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +V +I + F + E + S N+ +PA IP++ VQ A ++ Sbjct: 119 NEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYR 178 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +GCRG++R D LF + E+N PG T Sbjct: 179 VLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFT 210 >gi|162449160|ref|YP_001611527.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum 'So ce 56'] gi|161159742|emb|CAN91047.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum 'So ce 56'] Length = 1185 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 39/317 (12%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGE--DGLVQAILELL 75 A A ALE AG +V +I+V VLA L +PDL FN G+ G+ + ++ + L Sbjct: 28 AIAGALERAGHEVERIEVSGPASRVLARLEALQPDLIFNTAEGHKGKTREAFYPSLFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPL 133 IPYT S +++DK +K+V++S GV + LVNR T+DS L +S P ++KP Sbjct: 88 GIPYTGSDAYTLNVALDKSLTKRVLASYGVATPRARLVNRTTLDSGALDDVSFPVIVKPN 147 Query: 134 KGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----------- 179 GSS GI + +D ++++ LL+E Y+ GI++ C Sbjct: 148 FEGSSKGIFREWSVCEDAHHLAEVVERQLARFEAGLLVEHYIAGIDVACAFVDGLKEANG 207 Query: 180 ----------GVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 GV+ V + VP S + Y + LK++ PA++P + ++ Sbjct: 208 ARSSGTGIPEGVLTPIEF-VIDPQVPGSYNVYDFNLKHAKPEQVTRRPAQLPAATIERIR 266 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEMAAYAGY 283 + +A+ + +R +F P + + V +LE++ P + P + AA G Sbjct: 267 AITARVVRALDLKDHARCEFRVTPSASRSQGHDVHFLEVDGLPTLQPGASVFVAAAQRGV 326 Query: 284 SFRELLLWMVEDASCLR 300 F ++ +V A C R Sbjct: 327 DFDGVIRAIVRSA-CKR 342 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 22/296 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77 +A SA+E G V ++ + LA D+ FN+ G G + V A+ ELL I Sbjct: 400 QAITSAIESYGHTVVPLEATPDLPRALAASGVDVVFNIAEGLRGRGREAQVPALCELLGI 459 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLK 134 PY+ S +L++DK +KQ++ + G+ +V + + P P ++KP Sbjct: 460 PYSGSDATTLSLALDKGLTKQILRAAGIETAEWQVVT----TGREKLKPFRYPVIVKPNA 515 Query: 135 GGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------AS 186 G+S GI + KD++ + + LIE+Y+ G E T G++G+ Sbjct: 516 EGTSKGITSASVVKDEAAARAAAKQLVDRYHQPALIEEYITGREFTVGLLGERRPKVLPP 575 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 ++V + P Y Y+ K S PA++ + V+++ A+ CR ++R Sbjct: 576 MEVVFVDPPAYPVYGYDEKQSDTPRVRFECPAQLTPSELRRVEKVVRDTFAALACRDVAR 635 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D R V+ +EIN PG+TP S +A AG +R L+ ++ A CL+ Sbjct: 636 VDLRMAKDGR-VYVIEINPLPGLTPDFSDLCVIAKVAGMDYRMLIGEIL--AGCLK 688 >gi|16519939|ref|NP_444059.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] gi|2494029|sp|P55650|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG gi|2182621|gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 336 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 25/285 (8%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHLKP--------DLAFNVLHGNFGEDGL--VQAILE 73 +AL++ G + + D+ + L P + FN+ G GE V A+LE Sbjct: 40 AALQECGHETLLCEGDKGLLTTLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHVPAMLE 99 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + +PYT S L L+ DK+ SK ++ GVP P+ + R +S + P V+KP Sbjct: 100 MAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPT-PNFSIMRRGTESTDDLRFPVVVKPR 158 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 +S G+ ++ + P L Q+ + L+E+Y+DG E+ ++G+ ++V Sbjct: 159 HEDNSFGLQLVHE----PAQLQQAVKMIVTKYAQDALVEEYIDGREIHVALLGNQEVEVL 214 Query: 191 -----EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 E+ ++ ++E KY +++ PAKI + ++ ++ +A CR + Sbjct: 215 PMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATFRACQCRDYA 274 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D D S + F LEIN PG++ S + A AG+S+ L+ Sbjct: 275 RVDLRLD-RSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLI 318 >gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4] gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4] Length = 336 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ L+++PY AS+ +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138 Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N++ +Q + +K GSS+G K D S + + ++ + Sbjct: 139 FLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVG--CYKVDDSSKVAGVLKDAFGYAPY 196 Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++E+ + EL V G+ + EI + FY+++ KY SS T V+ + Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P DI ++++ A A + + R +SR DF F ++ EIN PG TP+S+FP+M Sbjct: 257 PTDISEQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGSTPISMFPKMLQ 315 Query: 280 YAGYSFRELL 289 G+ F E L Sbjct: 316 NHGHDFTEYL 325 >gi|220916612|ref|YP_002491916.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954466|gb|ACL64850.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 728 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 20/286 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ + + L L D+ FN+ G G + V ++LELL+I Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S A ++S+DK +K++V + G+ +++N ++ P ++KP+ G+ Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496 Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192 S G+ + +D+ ++ + + L E YV G E T G++G+ L EI Sbjct: 497 SKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556 Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQ---AIGCRGIS 244 A + YS+E+K + + +PAK+ +E++RL A + A+GCR ++ Sbjct: 557 VFLDAKDPTPIYSFEMKQDWNERIRYEVPAKL---TPRELERLEKAARECFTALGCRDVA 613 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 R DF D R + ++E N PG+ P S +A AG +R L+ Sbjct: 614 RLDFRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALI 658 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 25/285 (8%) Query: 10 SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63 SE E + + A A A+E G +V +I+V + L+ PDL FN G G Sbjct: 14 SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73 Query: 64 E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + A+ + L +PYT S A ++++DK +K V++ GV V Sbjct: 74 RFREAFFPALFDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133 Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP GSS GI + D +++Q + LL+E++V G +LT Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193 Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225 + A+ +D A K Y YELK + V PAK+ + Sbjct: 194 PFLEAAAPERHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDQAVSVRAPAKVKRAQAE 253 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +Q+L ++ +G R + R D ++++LEIN P + P Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEP 297 >gi|86158871|ref|YP_465656.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775382|gb|ABC82219.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 727 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 14/283 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ + + L LA D+ FN+ G G + V ++LELL+I Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLASTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S A ++S+DK +K++V + G+ +++N ++ P ++KP+ G+ Sbjct: 437 PYTGSDPSALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496 Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192 S G+ + +D+ ++ + + L E YV G E T G++G+ L EI Sbjct: 497 SKGVTRKSVVRDELELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556 Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + YS+E+K S + +PAK+ +++ A A+GCR ++R D Sbjct: 557 VFLDAKDPTPIYSFEMKQDWSERIRYEVPAKLSPRELDRLEKAARECFTALGCRDVARLD 616 Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 F D R + ++E N PG+ P S +A AG +R L+ Sbjct: 617 FRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRGLI 658 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 25/285 (8%) Query: 10 SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63 SE E + + A A A+E G +V +I+V + L+ PDL FN G G Sbjct: 14 SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73 Query: 64 E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + A+ + L +PYT S A A+++DK +K V++ GV V Sbjct: 74 RFREAFFPALFDELGMPYTGSDAYALAVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133 Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP GSS GI + D +++Q + LL+E++V G +LT Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPVRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193 Query: 180 GVMGDASLDVTEIAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225 + A+ D + P K Y YELK + V PAK+ + Sbjct: 194 PFLEAAAPDRHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAE 253 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +Q+L ++ +G R + R D ++++LEIN P + P Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEP 297 >gi|197121819|ref|YP_002133770.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] gi|196171668|gb|ACG72641.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] Length = 728 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 14/283 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ + + L L D+ FN+ G G + V ++LELL+I Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S A ++S+DK +K++V + G+ +++N ++ P ++KP+ G+ Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496 Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192 S G+ + +D+ ++ + + L E YV G E T G++G+ L EI Sbjct: 497 SKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556 Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + YS+E+K + + +PAK+ + +++ A A+GCR ++R D Sbjct: 557 VFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLSPRELERLEKAARECFTALGCRDVARLD 616 Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 F D R + ++E N PG+ P S +A AG +R L+ Sbjct: 617 FRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALI 658 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 25/297 (8%) Query: 10 SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63 SE E + + A A A+E G +V +I+V + L+ PDL FN G G Sbjct: 14 SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73 Query: 64 E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + A+ + L +PYT S A ++++DK +K V++ GV V Sbjct: 74 RFREAFFPALFDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133 Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP GSS GI + D +++Q + LL+E++V G +LT Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193 Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225 + A+ +D A K Y YELK + V PAK+ + Sbjct: 194 PFLEAAAPERHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAE 253 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +Q+L ++ +G R + R D ++++LEIN P + P + AA G Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEPGAGIYAAAALEG 309 >gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila caviae GPIC] gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila caviae GPIC] Length = 811 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 148/344 (43%), Gaps = 64/344 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S E +VSL S + L + V ++R Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513 Query: 41 ------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 + LA+L D +LHG FGEDG +Q LE+ PY +L SA+SMDK+ Sbjct: 514 YHVLSSKIAEALANL--DFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKI 571 Query: 95 RSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 +K++ +S GVPV P L R +++ + P +K GSS+G+ Sbjct: 572 MTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILET---FTFPMFVKTAHLGSSIGVF 628 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPK--- 196 + + + + S ++ + + IE+ G IE++C +GDA I+ P Sbjct: 629 EVHNETELKAKI--SEAFLYDTDVFIEESRLGSREIEVSC--LGDA-CSCYYISEPHERR 683 Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLF 250 F YE KY N + L++ +E V+ L ++ I +G R DF Sbjct: 684 GSKGFIGYEEKY-GFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFL 742 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 D FWL E+N PGMT S F A G++F +++ ++ Sbjct: 743 D--REGNFWLSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784 >gi|114047700|ref|YP_738250.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-7] gi|123326497|sp|Q0HUL2|DDL_SHESR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113889142|gb|ABI43193.1| D-alanine--D-alanine ligase [Shewanella sp. MR-7] Length = 336 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 15/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ L+++PY AS+ +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138 Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N++ +Q + +K GSS+G K D S + + ++ + Sbjct: 139 FLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVG--CYKVDDSSKVAGVLKDAFGYAPY 196 Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++E+ + EL V G+ + EI + FY+++ KY SS T V+ + Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P DI +++ A A + + R +SR DF F ++ EIN PG TP+S+FP+M Sbjct: 257 PADISDQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGSTPISMFPKMLQ 315 Query: 280 YAGYSFRELL 289 G+ F E L Sbjct: 316 NHGHDFTEYL 325 >gi|297621521|ref|YP_003709658.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU 86-1044] gi|297376822|gb|ADI38652.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU 86-1044] Length = 380 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 142/333 (42%), Gaps = 68/333 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 +AVL GG S E E+S+ +G AL +K+ Sbjct: 4 LAVLFGGRSIEHEISVITGLQAILALNPKKYKILPVYFALNGKWYTGDPLLERSFYRKLP 63 Query: 34 ------SQIDV--DRSVG----LVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 ++I + D S+G L L P D HG +GEDG VQ +LEL +PYT Sbjct: 64 AAYSDLTEITLLPDPSIGGFKDLALNRTYPVDRCLLCFHGQYGEDGCVQGLLELAGLPYT 123 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIK 131 S +L+SAL+M K +K ++ + +P P ++V++ S + P IK Sbjct: 124 GSRVLSSALTMSKSHTKLLLQALNIPCLPHVVVDKQEAVSDLAAVRKKILDTLRYPLFIK 183 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM-GDASL-D 188 P GSS+GI S LD + + + +IE Y+D +E+ V+ GD Sbjct: 184 PNHLGSSIGIAKATDKNS--LDRALAKVFLYDSAAIIEPYLDNLLEINVSVLEGDPPRSS 241 Query: 189 VTEIAVPKSDFYSYELKY------SSLNSTH--------VLPAKIPLDIYKEVQRLAFLA 234 EI + + SYE KY S+ S+ + P + L I + V A A Sbjct: 242 AVEIPIASQEALSYEDKYLKGGAKSTGGSSQGMAGLTRMIDPQDLDLKIKQGVINHALKA 301 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + C G+ R DF+ D + +++ E N PG Sbjct: 302 FKELSCSGVCRFDFMLDTSTETLYFNEANPIPG 334 >gi|58698113|ref|ZP_00373036.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535359|gb|EAL59435.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 190 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + FY YE KY+ + H+ PAKIP +IYK A HQ +GC+ ISRSDF ++P + Sbjct: 74 NKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLGCKTISRSDFRYNPKNNT 133 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296 + LEIN PG T +S+ PE+A A G +F EL+ ++ED+ Sbjct: 134 LKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 174 >gi|119775038|ref|YP_927778.1| D-alanyl-alanine synthetase A [Shewanella amazonensis SB2B] gi|189083048|sp|A1S6V2|DDL_SHEAM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119767538|gb|ABM00109.1| D-alanine--D-alanine ligase [Shewanella amazonensis SB2B] Length = 336 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/323 (24%), Positives = 138/323 (42%), Gaps = 37/323 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE--------------DAGFKVSQIDV-----DRS 41 + +L GG SE ++SL S K S L + F+ + ++ R Sbjct: 6 LVLLCGGGGSEHDISLLSAKYFESCLATLPRFNTLWLELTAEGQFRTREGEIVELTNRRE 65 Query: 42 VGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + P D +HG GE G +Q+ L+ +PY G AS+ +K+ +K Sbjct: 66 IRFADEAKAPWSVDYVIPCIHGYPGETGDIQSWFNLIRLPYFGCGSEASSNCFNKITAKM 125 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPL 152 S+ G+P P + ++ + D+ + + IK GSS+G + + IP Sbjct: 126 WFSALGIPNTPYLYLDEPSNDAIARVEAAFDEWGSVFIKAASQGSSVGCFPAHRREDIP- 184 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSS 208 L ++ + +++E+ + EL V V EI + FYS+E KY + Sbjct: 185 -GLVRKAFEYAPFVVVEKTIKARELEVAVYDYQGEIVATRPGEIVCAANTFYSFEEKYDT 243 Query: 209 LNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + THV + + ++ A A + + R +SR DF ++ EIN P Sbjct: 244 KSQAVTHVEAPDVDEETVAAIRDYALRAFKGMKLRHLSRIDFFLTE-DNQILLNEINTFP 302 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 G+T +S+FP+M A+ G+ F L Sbjct: 303 GLTQISMFPKMLAHHGHDFATFL 325 >gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223] gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223] Length = 337 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S ++L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F +Q ++ +K GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQTALAQWGSIFVKAASQGSSVG--CYKVDDSAKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V G+ V EI + FY+++ KY +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185] gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185] Length = 337 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S ++L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F +Q ++ +K GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSAKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V G+ V EI + FY+++ KY +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|144897235|emb|CAM74099.1| D-alanine--D-alanine ligase [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 4/88 (4%) Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD---PLSR-KVFWLEINVQPGMTP 270 +PA IP + Y E RLA AH+ +GCRG+SR+D +D P + ++ LE+N QPGMT Sbjct: 1 MPAPIPAEDYAEACRLAVEAHRVLGCRGVSRADLRYDDTKPGQKPRLIVLEVNTQPGMTA 60 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASC 298 S+ P++A+Y G SF EL+ WMVE A C Sbjct: 61 TSLVPDIASYCGISFPELVRWMVEQAEC 88 >gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ] Length = 329 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 144/328 (43%), Gaps = 37/328 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48 +L GG SE EVSL S LE + V ++++ + V H Sbjct: 6 LLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGELY 65 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D A +HG GE+G++Q+I EL+ +PY S +K+ +K + Sbjct: 66 YPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLWLD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + VP P I ++ + +S + IK GSS+G + + + +L Sbjct: 126 ALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLESTIL 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209 S++ + +LIE+ + EL + + +T EI P FY Y+ KYS S Sbjct: 186 --SAFKFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPDG-FYDYDQKYSNDSA 242 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + +++ + A + + R +SR DF KV+ EIN PGMT Sbjct: 243 TKTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTE-EGKVYLNEINTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +S+FP+M G F E L ++E+++ Sbjct: 302 SISMFPKMMENHGVKFSEYLRKIIEEST 329 >gi|1255019|gb|AAB17900.1| D-alanine:D-alanine ligase [Enterococcus pseudoavium] Length = 200 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L++PY +G++ SA +MDK+ +K ++ + G+P P +L N++ + + + Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P IKP GSS+GI + + + L ++ + + L+EQ +D E+ V Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNAL--KEAYRYDSRALVEQGIDAREIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T E+ V + FY Y KY +PA++P ++ ++ + A LA+ + Sbjct: 119 LGNDDVRTTLPGEV-VKEVAFYDYNAKYIDNTIQMAIPAEVPKEVMQKAREYAKLAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58] gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58] Length = 808 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/334 (25%), Positives = 144/334 (43%), Gaps = 46/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+SL S + + + + + R Sbjct: 453 IGLVCGGKSCEHEISLLSARHVSHRFSQEYYDCTFFVISRDGLWNVVQDLNTPLPKEQGS 512 Query: 41 ---SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 S + A L D +LHG FGEDG +Q E+L PY +L +A+SMDK+ +K Sbjct: 513 PVLSSEIAKALLSIDFFLPILHGPFGEDGSIQGFFEILGKPYGGPDLLPAAISMDKLMTK 572 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQ 148 +V S+ GVPV P ++ F + + P V+K GSSLGI ++ + Sbjct: 573 RVASAVGVPVVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKE 632 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-----FYSYE 203 + + ++ ++ D + E ++ E+ +G IA P F Y Sbjct: 633 ELEEKISEAFLYD-TDIFIEESRLESREIEISCIGQPY--SFYIAKPNERRGSQGFIGYH 689 Query: 204 LKY--SSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 KY + ++S ++ ++P + V+ A +AI +G +R DF D +WL Sbjct: 690 EKYGLNGISSARIIFDLQLPKESENRVKEFAERVFKAIQGKGCARIDFFLDEEGN--YWL 747 Query: 261 -EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 EIN PGMT S F + +S ++L +++ Sbjct: 748 SEINPIPGMTASSSFLRAFEQSEWSAEKVLDYLI 781 >gi|7157927|gb|AAF37343.1|AF170804_1 D-alanine:D-alanine ligase [Enterococcus durans] Length = 200 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L +PY +G+L SA +MDK+ +K ++ + GVP P +L N++ + + + Sbjct: 1 FLETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GS +GI K + L +++ + + ++EQ ++ E+ V Sbjct: 61 GSLLYPMFVKPANMGSGVGIS--KAENREELQNALRTAYQYDSRAIVEQGIEAREIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T E+ V FY Y+ KY + +PA++P ++Y++ Q A LA+ + Sbjct: 119 LGNEDVRTTLPGEV-VKDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp. salmonicida A449] gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 329 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 146/323 (45%), Gaps = 45/323 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDV---------DRSVGLVLAH 48 +L GG SE EVSL S A+ LE G +V+++++ R L L Sbjct: 8 LLCGGGGSEHEVSLRS----ANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDK 63 Query: 49 L-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L +P D +HG GE G +Q+ LEL +PY AS + +K+ +K + Sbjct: 64 LLSFDSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWL 123 Query: 101 SSCGVPVCPSILVNR-----FTMDSQHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P + + T L V IK GSS+G + DL Sbjct: 124 SAIGIPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNET----DL 179 Query: 155 LQ--SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSS 208 LQ ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS Sbjct: 180 LQGIKDAFGYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSS 239 Query: 209 LNSTHV-LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + T L A+ + + A A + + +SR DF ++ EIN P Sbjct: 240 ASHTATSLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFP 298 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 GMT +S+FP++ + G+SF L Sbjct: 299 GMTSISMFPKLLEHHGHSFAHYL 321 >gi|1814242|gb|AAB41851.1| D-Alanine:D-Alanine ligase [Streptococcus equinus] Length = 197 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 12/188 (6%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125 LE+L++PY + IL+S+++MDK+ +K V+ S GVP+ + + + + ++ Sbjct: 2 LEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P IKP GSS+GI K D L + + ++LIE V+ E+ G++G+A Sbjct: 62 YPVFIKPANMGSSVGI--SKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNA 119 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ V FY Y+ KY T +PA I +I +E++ A A +AIG G Sbjct: 120 DVQTTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCG 178 Query: 243 ISRSDFLF 250 +SR DF Sbjct: 179 LSRCDFFL 186 >gi|13507078|gb|AAK28428.1|AF251259_1 D-alanine-D-X ligase VanD4 [Enterococcus faecium] Length = 210 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 10/213 (4%) Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG +Q +LEL IPY I +S + MDK + VV + G+ V ++ + Sbjct: 1 EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAET 60 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 +S P +KP + GSS G+ + + + + + ++ ++ ++L+E+ V G E+ C ++G Sbjct: 61 LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDS--KILVEEAVSGSEVGCAILG 118 Query: 184 DA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + +V +I + F ++ + S N+ +PA +P ++ +++Q A ++ Sbjct: 119 NGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYR 178 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +GCRG++R D LF + E+N PG T Sbjct: 179 VLGCRGLARID-LFLREDGSIVLNEVNTMPGFT 210 >gi|150019989|ref|YP_001305343.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] gi|149792510|gb|ABR29958.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] Length = 310 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 146/296 (49%), Gaps = 25/296 (8%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQ--AILE 73 + K +A++DA K + ++ R L + K D FN+ + E V ++L+ Sbjct: 13 NEEKKMINAIKDAISKKYKCEIVRFDEDFLRKINKYDFVFNLSNKGGKEVKQVHVPSVLD 72 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 L IPYT S A+ +DK+ +K ++ +P +V+ + + I Y++KP Sbjct: 73 FLGIPYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVD--VGEIPNYIDGKYIVKPP 130 Query: 134 KGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQL----LIEQYVDGIELTCGVMGDASLD 188 + GS+ GI KD + L+ L+ D+ L+E+++DG E + GV+G+ + Sbjct: 131 REGSAKGIT---KDSIVDNLEDLKKQVKKIHDEFSQPALVEKFIDGREFSVGVIGNKKPE 187 Query: 189 VTEI------AVPK--SDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V I ++PK FYSY +K Y + ++ PA + +D+ K+++ A + + Sbjct: 188 VLPILEIDFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQKLFRVLN 247 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVE 294 R +R D ++++LE+N P + PV S +MA AG + +L+L ++E Sbjct: 248 LRDYARMDLRIK--GGEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKILE 301 >gi|1255021|gb|AAB17901.1| D-alanine:D-alanine ligase [Enterococcus saccharolyticus] Length = 200 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE + +PY +G+L SA MDK+ +K ++ S G+P P +L N++ + + + Sbjct: 1 FLETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQIFEQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI K + + L ++ + ++ +IEQ ++ E+ + Sbjct: 61 GSLRYPMFVKPANMGSSVGI--SKAENRVELQNALEEAYKYDNRAVIEQGIEAREIEVAI 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T EI V FY Y KY + +PA++P ++ ++ Q A LA+ + Sbjct: 119 LGNEDVRTTMAGEI-VKDVAFYDYNSKYIDNSIVMQIPAQVPDEVQEKAQEYAKLAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|126090206|ref|YP_001041687.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155] gi|126174499|ref|YP_001050648.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155] gi|125997704|gb|ABN61779.1| D-alanine--D-alanine ligase [Shewanella baltica OS155] gi|125999862|gb|ABN63932.1| hypothetical protein Sbal_4569 [Shewanella baltica OS155] Length = 337 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S ++L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDSELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F +Q ++ +K GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V G+ V EI + FY+++ KY +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|160875203|ref|YP_001554519.1| D-alanyl-alanine synthetase A [Shewanella baltica OS195] gi|189083050|sp|A9L0H9|DDL_SHEB9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160860725|gb|ABX49259.1| D-alanine--D-alanine ligase [Shewanella baltica OS195] gi|315267396|gb|ADT94249.1| D-alanine/D-alanine ligase [Shewanella baltica OS678] Length = 337 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S ++L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F +Q ++ +K GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V G+ V EI + FY+++ KY +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|152991773|ref|YP_001357494.1| D-alanyl-alanine synthetase A [Sulfurovum sp. NBC37-1] gi|189083062|sp|A6Q6M8|DDL_SULNB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151423634|dbj|BAF71137.1| D-alanine-D-alanine ligase [Sulfurovum sp. NBC37-1] Length = 346 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 47/317 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S E E+S+ S L+ + + DR L+ Sbjct: 3 IAILFGGSSFEHEISIVSAITMKKVLKKSTLTYIFVSADRKFYLIDTEKINSKLFSSGEY 62 Query: 49 -------LKPD------------LAFNVL----HGNFGEDGLVQAILELLEIPYTHSGIL 85 LK D +AF+VL HG GEDG V +++E IPY + Sbjct: 63 KKGKQLVLKNDGFFTKGMFGSKQVAFDVLLNLIHGRDGEDGKVASMMEFFNIPYISPRLE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA+S +K+ +K + S GV P +++ D + + P +IKP++ GSS+G+ ++K Sbjct: 123 ASAMSYNKLYTKFLAESLGVKTVPYEHLSK-NGDRKISMEYPVIIKPVRLGSSIGVSIVK 181 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI----ELTCGVMGDASLDVTEIAVPKSDFYS 201 + LD ++ + +++E ++DG+ + C GD L + E K +F Sbjct: 182 SEAE--LDYALDVAFEFDNDVIVEPFIDGVKEFNQAGCHT-GDWELSIVE-EPQKEEFLD 237 Query: 202 YELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +E KY + + VL A I ++ +Q + + I R DF ++ ++ Sbjct: 238 FEKKYMDFSRDSQVLSADISEELKNNIQVTFKKIYDPLFMGSIIRCDFFV--VNDEILLN 295 Query: 261 EINVQPGMTPVSIFPEM 277 EIN PG +FP+ Sbjct: 296 EINPIPGSMANYLFPDF 312 >gi|172038031|ref|YP_001804532.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171699485|gb|ACB52466.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 340 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 23/245 (9%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +++L+LL IPY + AL+ +K ++K +V S GV V L+ + + + PP Sbjct: 100 RSLLDLLNIPYLGNTAELMALTANKAKAKAIVRSMGVKVPYGELLRQGNTLN---LRPPV 156 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM---GD 184 VIKP +SLG+ ++K L ++ + DQ+L+E+Y++ G E+ CG + G+ Sbjct: 157 VIKPDNSDNSLGVTLVKTMDEYEAGL--KKAFEYADQVLVEEYIELGREVRCGTIVKNGE 214 Query: 185 -ASLDVTEIAVPKSDF------------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 SL + E AV D + EL Y++ + + VQ +A Sbjct: 215 LISLPLEEYAVNSKDHPIRNHEDKLKKDDAGELTYAAKDKKKAWIVDSNDPATRRVQEIA 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 HQA+GCR S DF DP + F LE + +P S+ P MA G S ELL Sbjct: 275 KQCHQALGCRHYSLFDFRIDPQGQAWF-LEAGLYCSFSPKSVIPMMAQAKGISLNELLEI 333 Query: 292 MVEDA 296 + +A Sbjct: 334 AINEA 338 >gi|167947938|ref|ZP_02535012.1| D-alanine--D-alanine ligase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 128 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/107 (48%), Positives = 64/107 (59%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A AL +D ++ L+ D AF VLHG Sbjct: 12 VAVLMGGCSAEREVSLRSGDAVFQALLRQAIDAHAVDSAENLLEQLSEGGFDRAFIVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 GEDG VQ LE + +PYT SG+L SAL MDK R+K + S G+P Sbjct: 72 RGGEDGTVQGALESIGLPYTGSGVLGSALGMDKYRTKALWSGLGLPT 118 >gi|217076423|ref|YP_002334139.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus TCF52B] gi|217036276|gb|ACJ74798.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus TCF52B] Length = 312 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 137/262 (52%), Gaps = 26/262 (9%) Query: 52 DLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D FN L G++ + V A+L+LL IPYT S + +L +DK+ +K ++ +P Sbjct: 49 DFVFN-LSNKGGKETIQVHVPALLDLLNIPYTSSNAYSHSLCLDKITTKIIMQHYNIP-T 106 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSS-SWNHGD-- 164 P V + + + +++KP + GS+ G I KD + L LQ + H + Sbjct: 107 PRFYVYDLGQTPEKIDNGTFIVKPPREGSARG---ISKDSVVDNLKALQKMVKYIHEEFK 163 Query: 165 -QLLIEQYVDGIELTCGVMGDA-SLDVTEI------AVPK--SDFYSYELKYSSLNST-H 213 L+E+++DG EL+ G++G+ SL+V I +P+ FYSY +K++ T + Sbjct: 164 QPALVEEFIDGKELSVGIIGNGDSLEVLPILEIDFSTLPEGLERFYSYNVKHNYGEMTNY 223 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-S 272 + PA+I ++ ++++ A + + R +R D ++++LE+N P + PV S Sbjct: 224 ICPARISNNVKEKLEFYAKKLFRVLNLRDYARMDVRI--RDDEIYFLEVNSAPQLVPVYS 281 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 +MA AGY + +L+L ++E Sbjct: 282 DITKMAKAAGYEYDDLILKILE 303 >gi|24373771|ref|NP_717814.1| D-alanyl-alanine synthetase A [Shewanella oneidensis MR-1] gi|39930896|sp|Q8EEZ2|DDL_SHEON RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24348157|gb|AAN55258.1|AE015664_1 D-alanine--D-alanine ligase [Shewanella oneidensis MR-1] Length = 336 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 15/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ L+++PY AS+ +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138 Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N++ +Q + +K GSS+G K D++ + + ++ + Sbjct: 139 FLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVG--CYKVDEASKVLGVLKDAFGYAPY 196 Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++E+ + EL V G+ + EI + FY+++ KY SS T V+ + Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P DI +++ A A + + R +SR DF F ++ EIN PG TP+S+FP+M Sbjct: 257 PTDISDQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGSTPISMFPKMLQ 315 Query: 280 YAGYSFRELL 289 G+ F + L Sbjct: 316 NHGHDFTQYL 325 >gi|68535999|ref|YP_250704.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] gi|68263598|emb|CAI37086.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] Length = 202 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 16/187 (8%) Query: 114 NR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 NR T D Q + P +KP + GSS+GI + ++ + +++H +++++E + Sbjct: 10 NRELTEDEQQRLGLPVFVKPARRGSSIGISKVDSWEAFAQAV--EIAFDHDNKMIVESMI 67 Query: 173 DGIELTCGVM----------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 G E+ CGV+ A L+ TE FY ++ KY T +PA I + Sbjct: 68 HGREVECGVLQYPEGSVIASAPAMLEGTEDG--DEGFYGFDAKYLDNTVTPSIPAPIGEE 125 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 EV+RLA +A+ C G++R DF F + +V EIN PG TP+S++P+M G Sbjct: 126 ATAEVRRLAVRTFEALNCEGLARVDF-FVTDNGEVILNEINTLPGFTPISMYPQMFIAGG 184 Query: 283 YSFRELL 289 + +LL Sbjct: 185 MEYPQLL 191 >gi|307299025|ref|ZP_07578827.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915450|gb|EFN45835.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 315 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 17/261 (6%) Query: 52 DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DL FN+ GN + A+L+LL IP+T SG A+AL ++K +K ++ + G+ P Sbjct: 49 DLVFNLTTAMGNTERQVHLPAVLDLLGIPFTGSGTTANALCINKTLTKLIMKAYGIS-TP 107 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQL 166 R + +L P ++KP+K G + GI +S+ D+ ++ S H Sbjct: 108 EFFSVRPGETADNLPFSPAIVKPVKEGGAKGIWEDSVVESVD-DMQRAVSRIHERFQQPA 166 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI---AVPK--SDFYSYELK-YSSLNSTHVLPAKIP 220 L+E++++G E T G++G+ L + EI ++P FYSY +K + + ++ PAKI Sbjct: 167 LVERFIEGREFTVGIVGNEVLPIMEIDFSSLPDHLETFYSYRVKQFHGDETNYICPAKIS 226 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAA 279 ++ + Q + + R D D K+++LE+N P + P S +MA Sbjct: 227 RREETVIREFSMRVFQVLDLKDYCRIDLKIDD-EGKIYFLEVNSLPLLVPDYSDIVKMAE 285 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G+S+ +L+ +V AS +R Sbjct: 286 TRGWSYEDLINRIV--ASAIR 304 >gi|283768801|ref|ZP_06341712.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa W1219] gi|283104587|gb|EFC05960.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa W1219] Length = 394 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 30/265 (11%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DLA V+HG GEDG +Q + E+L+IP+ I + + DK+ K ++ +P+ P Sbjct: 102 DLAIPVMHGTNGEDGTIQGLFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWF 161 Query: 112 LV---NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + T +Q L + P ++KP + GSS+G I I D LD + + + Sbjct: 162 WVYGQDIETYQTQILEKVNSLGYPVILKPARTGSSIG-ISIAHDNEEYLDCFK-DAMRYD 219 Query: 164 DQLLIEQYVDGI-ELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLN------- 210 ++++ E+ + + E+ C V+GD AS+ + E+ + + ++ KY S Sbjct: 220 EKIITEKVIKPMREINCSVIGDHTGSRASV-LEEVTQQEKELLDFDKKYGSGGSKGKSGM 278 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ +PA + + K +Q+LA + +G G+ R DF+ D ++K++ EIN PG Sbjct: 279 AATSRQVPAPLSHEETKYIQQLAKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPGS 338 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 ++ E G F +L+ ++ Sbjct: 339 LAFYLWKE----EGVDFSKLMNQLI 359 >gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] Length = 329 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 148/331 (44%), Gaps = 45/331 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALED-----AGFKVSQIDV---------DRSVGLVLAH 48 +L GG SE EVSL S A+ LE +G +V+++++ R L L Sbjct: 8 LLCGGGGSEHEVSLRS----ANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDK 63 Query: 49 L-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L +P D +HG GE G +Q+ LEL +PY AS + +K+ +K + Sbjct: 64 LLSFDSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P + + + IK GSS+G + DL Sbjct: 124 SAIGIPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEA----DL 179 Query: 155 LQ--SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSS 208 ++ + ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS Sbjct: 180 VKGIADAFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSS 239 Query: 209 LNSTHVLPAKIPLDIYK--EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + T L + + A A + + +SR DF ++ EIN P Sbjct: 240 ASHTETALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFP 298 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GMT +S+FP++ + G+ F + L ++ AS Sbjct: 299 GMTSISMFPKLLEHHGHRFSDYLEQILRKAS 329 >gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] Length = 330 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-DRSVGLVLAHLKPDLAFN---- 56 +L GG +E EVSL S K A L + F ++ +++ D + + LK +L + Sbjct: 6 LLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKTLL 65 Query: 57 --------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +HG GE G +Q++L++L IPY +S S +K+ SK + Sbjct: 66 SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + ++ + +K GSS+G + ++ + + Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLNS 211 + ++ + Q+L+E+ V EL D L T E+ P FY+Y+ KY S +S Sbjct: 184 NGAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243 Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T L A+ + + K + + + + + +SR DF +++ E+N PGMTP Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLTD-DNEIYLNEVNTFPGMTP 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G F+ L V +A Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|304408639|ref|ZP_07390260.1| D-alanine/D-alanine ligase [Shewanella baltica OS183] gi|307305468|ref|ZP_07585216.1| D-alanine/D-alanine ligase [Shewanella baltica BA175] gi|304352460|gb|EFM16857.1| D-alanine/D-alanine ligase [Shewanella baltica OS183] gi|306911771|gb|EFN42196.1| D-alanine/D-alanine ligase [Shewanella baltica BA175] Length = 337 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S ++L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTTAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F +Q ++ +K GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V G+ V EI + FY+++ KY +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ + A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYSIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|67921325|ref|ZP_00514844.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] gi|67857442|gb|EAM52682.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] Length = 340 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 31/262 (11%) Query: 57 VLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 VL F G+ Q A+ +LL+IPY + AL+ K ++K +V + GV V L+ Sbjct: 86 VLPQMFCLPGMTQYRALFDLLKIPYLGNKAELMALTAHKAKAKAIVRATGVKVPYGELLR 145 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS---SSWNHGDQLLIEQY 171 D+ +L PP VIKP +SLGI +++ +D Q+ ++ + D++L+E+Y Sbjct: 146 --NSDTPNL-RPPVVIKPANADNSLGITLVRT-----MDEYQAGLEKAFQYADEVLVEEY 197 Query: 172 VD-GIELTCG-VMGDA---SLDVTEIAVPKSD--FYSYE----------LKYSSLNSTHV 214 ++ G E+ CG ++ D SL + E AV + + +YE L Y++ + Sbjct: 198 IELGREVRCGTIVKDGELISLPLEEYAVNQENNPIRNYEDKLKRDDTGELTYAAKDKKKA 257 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 I + VQ +A HQA+GCR S DF DP + F LE + +P S+ Sbjct: 258 WIVDIKDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVI 316 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 MA G S ELL ++++A Sbjct: 317 SMMAQAKGISLDELLEIVIKEA 338 >gi|120599029|ref|YP_963603.1| D-alanyl-alanine synthetase A [Shewanella sp. W3-18-1] gi|189083057|sp|A1RK54|DDL_SHESW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120559122|gb|ABM25049.1| D-alanine--D-alanine ligase [Shewanella sp. W3-18-1] Length = 337 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S S+L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDECELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + +Q ++ IK GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V + + T EI + FY+++ KY SS Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP+S+FP+M G+ F E L ++ + Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINN 331 >gi|319426570|gb|ADV54644.1| D-alanine/D-alanine ligase [Shewanella putrefaciens 200] Length = 337 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S S+L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + +Q ++ IK GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALADWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V + + T EI + FY+++ KY SS Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|146292900|ref|YP_001183324.1| D-alanyl-alanine synthetase A [Shewanella putrefaciens CN-32] gi|189083054|sp|A4Y6E2|DDL_SHEPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145564590|gb|ABP75525.1| D-alanine--D-alanine ligase [Shewanella putrefaciens CN-32] Length = 337 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 37/321 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43 +L GG S+E ++SL S S+L + F V ++++D R + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + +Q ++ IK GSS+G K D S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208 + ++ + +++E+ + EL V + + T EI + FY+++ KY SS Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF F ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 TP+S+FP+M G+ F E L Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325 >gi|167749950|ref|ZP_02422077.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702] gi|167657117|gb|EDS01247.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702] Length = 354 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F VLHG +GEDG VQ + +L +P + A+AL D+ V+S + V ++ Sbjct: 98 DAVFPVLHGKYGEDGRVQGLCKLAGLPVIGNDFAAAALCNDRRIMDLVLSDSNIKVIENV 157 Query: 112 LVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 ++R M+ +S P P +S+G + + L+ +S++H Sbjct: 158 TLHRSEMNDMTAAIKKITGKLSFPIYTAPTSCSTSVG--ACRAENEKELEEAIKASFSHH 215 Query: 164 DQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++ E V G ELTC V+G D + + E+ V D +Y + S +PAK+ Sbjct: 216 PYIIAESAVKGRELTCAVLGAKHHDERVAIGEL-VRTDDSIDKLSEYIASTSELKVPAKL 274 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++++ A A+ A+ C+ +R D + D +V+ + PG+ SIF + Sbjct: 275 DGLTQNKIKQTARAAYDALSCKCFARVDMVLDN-DGEVYVRRVRGIPGLDRQSIFTRLVT 333 Query: 280 YAGYSFRELLLWMV 293 + YS+ E+L ++ Sbjct: 334 ESTYSYEEMLRMLI 347 >gi|7157937|gb|AAF37348.1| D-alanine:D-alanine ligase [Tetragenococcus solitarius] Length = 200 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 23/195 (11%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----- 126 LE +++PY +G++ SA SMDK+ +K ++ + +P P + V + SQ +P Sbjct: 2 LETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPV----LKSQWKENPKKIFE 57 Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ + + L+++ + + +++IEQ ++ E+ Sbjct: 58 QCEGTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEA--YRYDSRVVIEQSIEAREIE 115 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++G+ + T EI V + FY Y KY N +PA+IP ++ ++ + A +A+ Sbjct: 116 VAILGNEDVRTTLPGEI-VKEEAFYDYNSKYIDNNIKMQIPAQIPEEVQQKAREYATIAY 174 Query: 236 QAIGCRGISRSDFLF 250 ++G RG+SR DF Sbjct: 175 TSLGGRGLSRCDFFL 189 >gi|21227150|ref|NP_633072.1| D-alanine-D-alanine ligase-like protein [Methanosarcina mazei Go1] gi|20905483|gb|AAM30744.1| D-alanine-D-alanine ligase related protein [Methanosarcina mazei Go1] Length = 700 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 23/261 (8%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K DL N+ F D + V A+ E L IPYT +G A DK + V + Sbjct: 371 KTDLVLNLCDEGFYNDPVKELHVPAMFEQLNIPYTGAGPQCLAYCYDKSLVRGVAREMRI 430 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNH 162 PV +LV + S+ +S P ++KP G SS GI ++ + + LD+++ + Sbjct: 431 PVAKGVLVTDDSDISRLSLSFPLLVKPNSGDSSFGITQKSIVHSREEL-LDIMKETREKI 489 Query: 163 GDQ--LLIEQYVDGIELTCGVMGD----ASLDVTE---IAVPKS--DFYSYELKY---SS 208 G LL+E+++ G +++ G++G+ L +TE AVP YE K+ SS Sbjct: 490 GSDKPLLLEEFLPGKDISVGIIGNPPSCTVLPITEEDYSAVPGELPKICGYEAKWLPDSS 549 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P KEV R +GCR +R D+ D R LE+N PG Sbjct: 550 YWKIKSVPADLPEKTQKEVVRSCLALFTRLGCRDYARFDWRLDAEGRPRL-LEVNPNPGW 608 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 +MAAYA S+ +L Sbjct: 609 CWDGHLAKMAAYANISYSGML 629 >gi|1255013|gb|AAB17897.1| D-alanine:D-alanine ligase [Enterococcus avium] Length = 200 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L++PY +G++ SA +MDK+ +K ++ + G+P P +L N++ + + + Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI + + + L ++ + + L+EQ +D E+ V Sbjct: 61 GTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYDSRALVEQGIDACEIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T E+ V + FY Y KY + +PA +P D+ ++ + A A + Sbjct: 119 LGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAISML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|317128999|ref|YP_004095281.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315473947|gb|ADU30550.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 714 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/310 (23%), Positives = 144/310 (46%), Gaps = 19/310 (6%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--------GLVLAHLKPDLAFNVL 58 G + + L + K + L G +V + D+++ V++ +P L FN+ Sbjct: 19 GTPNREKYGLETIKNIKNGLLAGGHQVKTFEGDKNIINKLEDFMPSVISGERPGLVFNLS 78 Query: 59 HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 +G G+ V ILE++ +PY SG AL++DK+ +K ++ G+P +++ Sbjct: 79 YGIQGKGRYMHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPKFTVLDNP 138 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +S P ++KP S G+ ++ ++ + D +++ L+E+Y++G E Sbjct: 139 DSKFHEDLSYPLIVKPKNEAVSFGLKIVNNEEEL-RDGVKTIYEKFNSPTLVEEYIEGRE 197 Query: 177 LTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNST--HVLPAKIPLDIYKEVQRL 230 + G++G+ ++ V + Y++E K + T V PA I ++ K+VQ+L Sbjct: 198 VNVGLLGNNPVEALPPVELVFGEGPQIYTFEDKKNKSGRTVEKVCPAPISEELTKKVQQL 257 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ C +R DF D + LE+N + F A G ++ +L+ Sbjct: 258 AIDTFKALDCYDTARVDFRIDKEGNP-YILEVNSMASLGADGSFVFAADKVGLNYSDLMN 316 Query: 291 WMVEDASCLR 300 +V D +C R Sbjct: 317 RIV-DITCER 325 >gi|225850791|ref|YP_002731025.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1] gi|225645232|gb|ACO03418.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1] Length = 325 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 16/254 (6%) Query: 53 LAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + FN+ +G GED + ++LE+L +PYT S L++DK +K ++ +P P Sbjct: 68 IVFNLSYGIQGEDRYAHIPSLLEMLGVPYTGSSPEGHTLALDKAVTKILLKYYDIP-TPD 126 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + + P ++KPLK SLGI V+K + + + + H D ++E+ Sbjct: 127 FHVFSPSDHDFSNVRFPAIVKPLKEALSLGITVVKDTDQMKKAVSRITEEFHQDA-IVEE 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDF--------YSYELKYSSLNSTHVLPAKIPLD 222 ++ G E + G++G+ DV + V + DF +Y ++ + + PA IP Sbjct: 186 FIRGREFSVGLIGNDE-DVETLPVLEFDFGGDPDAIQTTYLKRHKPIEK--ICPADIPEK 242 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 K +Q L+ +G R +R+D D L ++ LEIN Q + F A AG Sbjct: 243 TAKRMQELSKKVFHVLGLRDYARTDIRMD-LEGNIYILEINSQASLGETGSFVTAAKTAG 301 Query: 283 YSFRELLLWMVEDA 296 Y++ +L+ ++ A Sbjct: 302 YTYEDLIEKILNTA 315 >gi|213853003|ref|ZP_03382535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 269 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 53/266 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47 + ++ GG S+E EVSL S K A++ F V + +D++ + A Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHVL 215 V S+FY+Y+ KY N V+ Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVV 269 >gi|1814244|gb|AAB41852.1| D-Alanine:D-Alanine ligase [Streptococcus gordonii] Length = 197 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 12/188 (6%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125 LE+L++PY IL+S+L+MDK+ +K+V+ S G+ P + V + + + +S Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLS 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P KP GSS+GI K D L ++ + ++L+EQ V E+ G++G+ Sbjct: 62 YPVFTKPSNMGSSVGI--SKSDNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNT 119 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + E+ V FY Y+ KY T +PA++P + +++ A A +AIG G Sbjct: 120 DVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLG 178 Query: 243 ISRSDFLF 250 +SR DF + Sbjct: 179 LSRCDFFY 186 >gi|294141187|ref|YP_003557165.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12] gi|293327656|dbj|BAJ02387.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12] Length = 336 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 16/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ EL+++PY AS +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFELIKLPYFGCDSEASRNCFNKVTAKMWFSALGIPNTPYI 138 Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N F D+ Q L S + IK GSS+G + + + L Q ++ + Sbjct: 139 FLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSPEELTESLKQ--AFTYSPY 196 Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++E+ ++ EL V D + T EI + FY+++ KY +S T V+ A I Sbjct: 197 VIVEKTIEARELEVAVYEKDGEIIATQPGEIICGTNTFYTFDEKYAENSQAETKVV-ADI 255 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + +E++ A + + +SR DF F ++ EIN PG+TP+S+FP+M Sbjct: 256 SESVSQEIREYAVKVFKGMKLSHLSRIDF-FLTADNEILLNEINTFPGLTPISMFPKMLQ 314 Query: 280 YAGYSFRELL 289 G +F + L Sbjct: 315 NHGDNFSDYL 324 >gi|91793706|ref|YP_563357.1| D-alanyl-alanine synthetase A [Shewanella denitrificans OS217] gi|122968653|sp|Q12LP2|DDL_SHEDO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91715708|gb|ABE55634.1| D-alanine--D-alanine ligase [Shewanella denitrificans OS217] Length = 335 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 39/322 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43 +L GG +E ++SL S + ++L + F V + +D R + Sbjct: 8 LLCGGGGAEHDISLMSARFFETSLAKSDQFSVLTLTLDKQGRYHTQDGNLCSLTNRREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FEDPSIAPWAVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ GVP P I +++F ++ + IK GSS+G + +I L Sbjct: 128 SALGVPNTPYIFLHQFDQEAIAQTQAAFDTWGSVFIKAASQGSSVGCYKVDVRDNIAKVL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGV---MGD--ASLDVTEIAVPKSDFYSYELKYS-- 207 ++ + +++E+ + EL V GD A+L EI + FYS++ KY+ Sbjct: 188 --EEAFGYAPYVVVEKTIKARELEVAVYEYQGDIIATLP-GEIICDTNKFYSFDEKYAKD 244 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 S T V+ + + + ++Q A A + + R +SR DF F ++ EIN PG Sbjct: 245 SKARTDVVASNLSPKLCLQIQDYAIKAFKGMKLRHLSRIDF-FLTQDDEILLNEINTFPG 303 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 +TP+S+FP+M G+ F E L Sbjct: 304 LTPISMFPKMLQNHGHDFTEYL 325 >gi|2245424|gb|AAC16915.1| D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 197 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 18/191 (9%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125 LE+L++PY IL+S+++MDK+ +K+V++S G+P P + V + + + ++ Sbjct: 2 LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM 182 P KP GSS+GI +S D L+S+ ++ + ++LIEQ V+ E+ G++ Sbjct: 62 YPVFTKPSNMGSSVGI-----SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLL 116 Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G+ + E+ V FY YE KY T +PAK+ D+ +++ A A AIG Sbjct: 117 GNEGAKSSWPGEV-VKDVAFYDYEAKYIDNKITMDIPAKLSEDVIVTMRQYAEKAFHAIG 175 Query: 240 CRGISRSDFLF 250 G++R DF + Sbjct: 176 GVGLARCDFFY 186 >gi|315105143|gb|EFT77119.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2] Length = 197 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 14/183 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANNGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD 119 GE+G + +L+L++IPY S +S DK + + V++ GV V P + N F Sbjct: 67 GENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGV-VTPQQVALPHNVFREL 125 Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ S P ++KP GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQMVMRSIAEKFSLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDG 174 + G Sbjct: 184 IVG 186 >gi|218886343|ref|YP_002435664.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757297|gb|ACL08196.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 408 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 96/384 (25%), Positives = 153/384 (39%), Gaps = 89/384 (23%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV GG S E +VS+ +G AL+ A ++ + VDR Sbjct: 8 VAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYIPAR 67 Query: 41 ------SVGLVLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELL 75 +V L +A K D+A HG +GEDG +Q + E + Sbjct: 68 DADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQGLFEAV 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---------SILVNRFTMDSQHL-IS 125 IPYT +LASA+ MDK +KQ ++ G+P+ P +L R +++ I+ Sbjct: 128 GIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAALAGIT 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP GSS+G V K D ++ + + + ++E Y+DG +E V D Sbjct: 188 LPGCLKPAHLGSSIG--VAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISVRRD 245 Query: 185 ASLDVTE-IAVPKSD--FYSYELKY--------------------------SSLNSTHVL 215 T I PK D + KY L+ T + Sbjct: 246 GEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLTREI 305 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 +P + ++ A + A G G R DF++D +V+ E+N PG + F Sbjct: 306 NPDLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPGS--FAFFL 363 Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299 AA + F LL M+++A + Sbjct: 364 WEAAESPIRFTRLLSLMIDEARAM 387 >gi|127513061|ref|YP_001094258.1| D-alanyl-alanine synthetase A [Shewanella loihica PV-4] gi|189083052|sp|A3QEV1|DDL_SHELP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126638356|gb|ABO23999.1| D-alanine--D-alanine ligase [Shewanella loihica PV-4] Length = 334 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 18/257 (7%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 LA D +HG GE G +Q+ EL+ +PY S +K+ +K S+ G+ Sbjct: 73 LAPWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAKMWFSALGI 132 Query: 106 PVCPSILVNRFTMDSQHLISPP--------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 P P + +N+ +D Q + +K GSS+G + IP L + Sbjct: 133 PNTPYLFLNQ--LDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDAAQIPAIL--A 188 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSS-LNST 212 ++++ +++E+ + EL V V E+ FY+Y+ KY++ +T Sbjct: 189 DAFHYSPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYAADSKAT 248 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + A++ +I ++++ A + R +SR DF P ++ EIN PG+TP+S Sbjct: 249 TKVVAEVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTP-EGEILLNEINTFPGLTPIS 307 Query: 273 IFPEMAAYAGYSFRELL 289 +FP+M A G F + L Sbjct: 308 MFPKMLANHGDDFSQYL 324 >gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 329 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 37/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV---------DRSVGLVLAHL--- 49 +L GG SE EVSL S L G +V+++++ R L L L Sbjct: 8 LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67 Query: 50 ----KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 +P D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQ-- 156 +P P + + N + + IK GSS+G + DL++ Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEA----DLVKGI 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSSLNST 212 + ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS + T Sbjct: 184 ADAFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHT 243 Query: 213 HVLPAKIPLDIYK--EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 L + + A A + + +SR DF ++ EIN PGMT Sbjct: 244 ETALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTS 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G+ F + L ++ A Sbjct: 303 ISMFPKLLEHHGHRFADYLEQILRKA 328 >gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114] gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114] Length = 330 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-DRSVGLVLAHLKPDLAFN---- 56 +L GG +E EVSL S K + L + F+++ +++ D + + LK +L + Sbjct: 6 LLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKTLL 65 Query: 57 --------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +HG GE G +Q++L++L IPY +S S +K+ SK + Sbjct: 66 SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + ++ + +K GSS+G + + + + Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLNS 211 + ++ + Q+L+E+ V EL D L T E+ P FY+Y+ KY S +S Sbjct: 184 NDAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243 Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T L A+ + + K + + + + + +SR DF +++ E+N PGMTP Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLTD-DNEIYLNEVNTFPGMTP 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G F+ L V +A Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|624702|gb|AAA60991.1| ligase [Enterococcus casseliflavus] Length = 197 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 10/187 (5%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126 + EL+++PY G+ SAL M+K Q ++ GV P+IL+ + + + Sbjct: 1 MFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTH 60 Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ Sbjct: 61 GFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGN 118 Query: 185 ASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 SL V A+ D F+ +E KY +++ +PA +P I +V+ A L ++++G +G Sbjct: 119 DSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKG 178 Query: 243 ISRSDFL 249 ++R DF Sbjct: 179 LARIDFF 185 >gi|51921845|gb|AAU14064.1| VanB [Enterococcus faecalis] Length = 244 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 9/185 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 62 DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 121 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 122 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 179 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224 + G E+ C VMG+ +V +I + F + E + S N+ ++PA IP++ Sbjct: 180 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 239 Query: 225 KEVQR 229 VQ Sbjct: 240 NRVQE 244 >gi|168699147|ref|ZP_02731424.1| D-ala D-ala ligase [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 146/312 (46%), Gaps = 33/312 (10%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71 S ++ KA A L G V+ + R++ L + PDL FN G + + V A+ Sbjct: 21 SPATVKAIADVLASLGHTVALLGDGRALIESLLNAPPDLVFNFAEGAGVSRSREARVPAV 80 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHL---- 123 E+L +PYT S A A+++DK ++++ S G+ V I + + D Sbjct: 81 CEMLGVPYTGSDPFALAVALDKDATRRLAESYGLTVPKGITLAPVAGEYDGDFAEFAPAL 140 Query: 124 ----ISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDG 174 ++ P + KP GSS GI ++ + P + W N+ +L+E+Y+ G Sbjct: 141 EDAGLTLPVIAKPTCEGSSKGIRGKCLITSAAEFGPAVV---ELWRNYQQPVLVEEYIAG 197 Query: 175 IELTCGVMGD------ASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEV 227 E+T G+ G + + P+S YS E+K + ++ +V PAK+P ++ + Sbjct: 198 DEITIGLYGSDPPQPIGVMQIVPKQSPESFVYSLEVKRNWADAVDYVAPAKLPREVLHAI 257 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFR 286 + A + +GCR ++R DF ++LEIN PG+ P S +A G ++ Sbjct: 258 EADAMALYAGLGCRDVARLDFRVR--DGVPYFLEINPLPGLNPDSGDLCYLAYRMGLTYP 315 Query: 287 ELLLWMVEDASC 298 EL+ +++ A+ Sbjct: 316 ELIGLILDSAAA 327 >gi|7157935|gb|AAF37347.1|AF170808_1 D-alanine:D-alanine ligase [Lactococcus garvieae] Length = 198 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 11/190 (5%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLI 124 LE++ + Y L+++ +MDK+ + V ++ GVP P + + + Q + Sbjct: 1 FLEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKL 60 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + P +KP GSS+GI + + + L + ++ + ++++IEQ V+ E+ C V+G+ Sbjct: 61 TFPVFVKPANMGSSVGISKVSSLEELEAGL--AVAYKYDNRVVIEQGVNAREIECAVLGN 118 Query: 185 ASLDVTEI---AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + V DFY Y KY +PA IP ++ ++++ A A+QA+ Sbjct: 119 GGKVRSTLPGEVVKDVDFYDYRSKYIDNKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGA 178 Query: 242 GISRSDFLFD 251 G+SR DF +D Sbjct: 179 GLSRCDFFYD 188 >gi|114563717|ref|YP_751230.1| D-alanyl-alanine synthetase A [Shewanella frigidimarina NCIMB 400] gi|122299324|sp|Q080C3|DDL_SHEFN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114335010|gb|ABI72392.1| D-alanine--D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 336 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 15/251 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ L+++PY AS+ +K+ +K S+ GVP P I Sbjct: 79 DYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGVPNTPYI 138 Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +++ D+ + +K GSS+G K D + + ++++ Sbjct: 139 FLHQLDDDAIKQTETAFDNWGSVFVKAASQGSSVG--CYKVDVKANIANVLKDAFSYAPY 196 Query: 166 LLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++EQ + EL V V EI + FYS++ KY +S T V+ + Sbjct: 197 VVVEQTIHARELEVAVYQYQGEVVATLPGEIICDSNTFYSFDEKYATNSKARTDVVADNL 256 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +I + ++ A A + + R +SR DF F ++ EIN PG+TP+S+FP+M Sbjct: 257 SPEISQLIRDYAVKAFKGMKLRHLSRIDF-FLTADNQILLNEINTFPGLTPISMFPKMLQ 315 Query: 280 YAGYSFRELLL 290 G++F E L+ Sbjct: 316 NHGHNFTEYLI 326 >gi|7157929|gb|AAF37344.1|AF170805_1 D-alanine:D-alanine ligase [Enterococcus malodoratus] Length = 200 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L++P +G++ SA +MDK+ +K ++ + G+P P +L N++ + + + Sbjct: 1 FLETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P IKP GSS+GI + + + L ++ + + L+EQ +D E+ V Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNAL--QEAYRYDSRALVEQGIDAREIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T E+ V + FY Y KY +PA+IP ++ ++ + A LA+ + Sbjct: 119 LGNDDVRTTLPGEV-VKEVAFYDYNAKYIDNTIQMAIPAEIPEEVMQKARDYAKLAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|167623784|ref|YP_001674078.1| D-alanyl-alanine synthetase A [Shewanella halifaxensis HAW-EB4] gi|189083051|sp|B0TRK1|DDL_SHEHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167353806|gb|ABZ76419.1| D-alanine--D-alanine ligase [Shewanella halifaxensis HAW-EB4] Length = 333 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 +HG GE G +Q+ EL+ +PY AS+ +K+ +K S+ G+ P I +N F Sbjct: 85 IHGYPGETGDIQSYFELINLPYFGCDSEASSNCFNKVTAKMWFSALGIRNTPYIFLNEFN 144 Query: 118 M----DSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +++ + IK GSS+G + + + L ++ + +++E+ Sbjct: 145 QQAIEETERALEKWGSIFIKAASQGSSVGCYRVDNKEQLANSL--EEAFKYSPYVVVEKT 202 Query: 172 VDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKE 226 ++ EL D + T EI + FYS++ KY+ + V+ A + I K+ Sbjct: 203 INARELEVAAYEVDGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADVDEVIAKQ 262 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +Q A A + + R +SR DF ++ EIN PG T +S+FP+M G++F Sbjct: 263 IQEYAIKAFKGMKLRHLSRIDFFLTD-ENEILLNEINTFPGQTQISMFPKMLQNHGHNFA 321 Query: 287 ELL 289 + L Sbjct: 322 QYL 324 >gi|1814248|gb|AAB41854.1| D-Alanine:D-Alanine ligase [Streptococcus mutans] Length = 198 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 15/190 (7%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHL 123 LE+L++PY + IL+S+++MDK+ +KQV+ S+ +P + L ++ + L Sbjct: 2 LEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKL 61 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +V KP GSS+GI K + L + + + ++LIEQ VD E+ G++G Sbjct: 62 IYPVFV-KPANMGSSVGIS--KAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILG 118 Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + T EI V FY YE KY T +PA+I I ++++ A + +GC Sbjct: 119 NTDVKTTLPGEI-VKVVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYRATAFRTLGC 177 Query: 241 RGISRSDFLF 250 G+SR DF Sbjct: 178 CGLSRCDFFL 187 >gi|157962243|ref|YP_001502277.1| D-alanyl-alanine synthetase A [Shewanella pealeana ATCC 700345] gi|189083053|sp|A8H5A5|DDL_SHEPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157847243|gb|ABV87742.1| D-alanine--D-alanine ligase [Shewanella pealeana ATCC 700345] Length = 334 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ EL+ +PY +S+ +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSESSSNCFNKVTAKMWFSALGIPNTPYI 138 Query: 112 LVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 ++ F S IK GSS+G + + + L ++ +++ Sbjct: 139 FLSEFNQQSLEQAEAALAKWGSIFIKAASQGSSVGCYRVDSIEQLASSLEEAFTFS--PY 196 Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIP 220 ++IE+ + EL D + T EI + FYS++ KY+ + V+ A + Sbjct: 197 VVIEKTITARELEVAAYEADGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADVD 256 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 I K++Q A A + + R +SR DF ++ EIN PG T +S+FP+M Sbjct: 257 EAIAKQIQEYAIKAFKGMKLRHLSRIDFFLTE-DNEILLNEINTFPGQTQISMFPKMLQN 315 Query: 281 AGYSFRELL 289 G++F + L Sbjct: 316 HGHNFAQYL 324 >gi|282853024|ref|ZP_06262361.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|282582477|gb|EFB87857.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|314922657|gb|EFS86488.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1] gi|314965740|gb|EFT09839.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2] gi|314982882|gb|EFT26974.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3] gi|315091191|gb|EFT63167.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4] gi|315094422|gb|EFT66398.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1] gi|327328918|gb|EGE70678.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1] Length = 197 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 14/183 (7%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118 GE+G + +L+L++IPY S +S DK + + V++ GV V P + N F + Sbjct: 67 GENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGV-VTPQQVALPHNVFREL 125 Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +Q ++ P ++KP GGSSLG+ + +P + ++++ + D +++E++ Sbjct: 126 GAQMVMRSIAEKFGLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183 Query: 172 VDG 174 + G Sbjct: 184 IVG 186 >gi|163750869|ref|ZP_02158103.1| D-alanylalanine synthetase [Shewanella benthica KT99] gi|161329427|gb|EDQ00422.1| D-alanylalanine synthetase [Shewanella benthica KT99] Length = 336 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 16/250 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ EL+ +PY AS +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKITAKMWFSALGIPNTPYI 138 Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N F D+ Q L S + IK GSS+G + + + L Q ++ + Sbjct: 139 FLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSQEELTEYLQQ--AFTYSPY 196 Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219 +++E+ ++ EL V D + T EI + FYS++ KY +S T V+ A I Sbjct: 197 VIVEKTIEARELEVAVYEKDGEIIATQPGEIICATNTFYSFDEKYAENSQAETKVV-ADI 255 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + ++ A + + +SR DF + ++ EIN PG+TP+S+FP+M Sbjct: 256 SESVSLRIREYAVKVFKGMKLSHLSRIDFFLTE-NNEILLNEINTFPGLTPISMFPKMLQ 314 Query: 280 YAGYSFRELL 289 + G F + L Sbjct: 315 HHGDDFSDYL 324 >gi|326330649|ref|ZP_08196953.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] gi|325951490|gb|EGD43526.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] Length = 371 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 13/233 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + HG GE G +Q + EL + T + ++AL MDK+ V+ + G+P L++ Sbjct: 102 LSAFHGGAGEAGGIQWLFELAGLKATGATPASAALGMDKLAFGAVMLNAGLPSLQRELLS 161 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 R+ S PY++KP GGSS+GI V+ D L LL +S ++ D Sbjct: 162 RYAAPS---FEGPYIVKPRFGGSSIGIEVV-DDYETGLALLNTSPHLRAGAVVEPYRPDL 217 Query: 175 IELTCGVMGDASLDVTEIAVP-KSD---FYSYELKYSSLN----STHVLPAKIPLDIYKE 226 +L V + V+++ P +SD Y Y KY + S PA++ + K+ Sbjct: 218 FDLNASVRTAPEIAVSDVERPLRSDEAKMYDYSAKYVHTDGLSSSPREFPAQVEESVTKQ 277 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ LA + G GI R DFL D +VF E+N PG + ++P+ A Sbjct: 278 IKDLAVRVVELTGLTGILRIDFLSDGKG-EVFINEVNSIPGALSLYLWPDTPA 329 >gi|325972391|ref|YP_004248582.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] gi|324027629|gb|ADY14388.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] Length = 325 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 22/292 (7%) Query: 21 ACASALEDAGFKVSQI-DVDRSVGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEI 77 A +AL+ G + +I +V VG + + DL FN+ G FG + ++ A+L+ +I Sbjct: 34 AIDAALQKLGHQTVRIGNVKALVGYLGEGKRCDLVFNIAEGLFGLLRESVIPALLDAYQI 93 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKPLKG 135 PY S A+ + K +K+VV GV +++ + D +S PY +KP+ G Sbjct: 94 PYVFSDSFVLAICLHKGFTKEVVRKAGVATADFCVLS--SSDDWKQVSLPYPLFLKPVAG 151 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDA----SLD 188 G+ +GI K + P DL + S + +L+E Y+ G E T G+ G S Sbjct: 152 GTGIGITASSKVTN-PKDLQKVSGAMLAAYQQPVLVETYLGGREFTVGITGTGDEAQSTG 210 Query: 189 VTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V EI + S YSY+ K +T + +K + +A A +A+GCR R Sbjct: 211 VMEIIIDHSSDGGIYSYKTKQEYETTTRY--ERPDESAWKASEAVALAAWRALGCRDGGR 268 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 D D V +LE+N G+ P+ S P ++ G + EL+ ++ A Sbjct: 269 IDVKMDE-KGVVHFLEVNPLAGLHPIDSDLPILSRMHGLGYDELIARIMHSA 319 >gi|153810104|ref|ZP_01962772.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174] gi|149834282|gb|EDM89362.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174] Length = 226 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 11/223 (4%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133 IPYT +G L+SA++MDK +K + GVP + +R + + P V+K Sbjct: 3 IPYTGTGYLSSAMAMDKGVTKAMFQMRGVPTPAGKAMKKKDRVETPQELGMDFPVVVKTC 62 Query: 134 KGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 GGSS+G+ ++ ++D + LD ++ + +++++E++V+G+E T V+ + V + Sbjct: 63 CGGSSIGVYIVDNQEDYTKALD----GAFTYENEVVVEEFVEGVEYTVAVVDGKAYPVVQ 118 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I VP FY YE KY PA I ++ K +Q A + A+ +R DF+ Sbjct: 119 I-VPVQGFYDYENKYKPGAVKETCPAPISEELTKRLQEAAVDGYHALEMESYARLDFIVT 177 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ LE N PGMTP S+ P+ AA G + L +++ Sbjct: 178 K-DEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIK 219 >gi|313619832|gb|EFR91421.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378] Length = 274 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P P++ Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159 Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V + + +++ P +KP GSS+GI K L + ++ + Sbjct: 160 VRLIDWKNYQEEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215 ++++EQ V E+ GV+G+ D +VP + FY Y+ KY N+ ++ Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274 >gi|218508112|ref|ZP_03505990.1| D-alanine-D-alanine ligase protein [Rhizobium etli Brasil 5] Length = 184 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 16/178 (8%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P IKP + GSS+G+ + Q L ++ + H LL E++V G E+ V+ DA+ Sbjct: 3 PLFIKPARQGSSVGVAKVHASQEFAPALAEA--FRHDHTLLAEEFVAGREIEFSVLEDAA 60 Query: 187 LDV-----TEIAVPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238 D+ EI VP + FY+Y+ KY N + +PA++P ++ ++ +A A +A+ Sbjct: 61 GDLFVSRPGEI-VPAENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAV 119 Query: 239 GCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GC G++R DF L+ + +L EIN PG T +S++ + A +G S+ E++ +V+ Sbjct: 120 GCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVD 174 >gi|229091614|ref|ZP_04222819.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|228691763|gb|EEL45513.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] Length = 219 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 13/222 (5%) Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLG 140 +L+S + MDK SK+++ G+ I + + +D + P V+KP GGSS+G Sbjct: 1 MLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNLDELDKLGFPLVVKPNSGGSSVG 60 Query: 141 I-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 + IV KD+ I + L W+ +++IE+Y+ G E+TC + L + I ++F Sbjct: 61 VKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDEITCSIFDGKQLPIISIR-HAAEF 116 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVF 258 + Y KY + + ++P ++ + V + + ++A+ C +R D + D + + Sbjct: 117 FDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKALKCSVYARVDMMVKDGIP---Y 172 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +E+N PGMT S+ P+ A AG + +LL ++E + +R Sbjct: 173 VMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 214 >gi|218462035|ref|ZP_03502126.1| putative D-alanine--D-alanine ligase A [Rhizobium etli Kim 5] Length = 268 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 12/165 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG VQ + ++ +P GIL SA ++DK +K+++ + G+PV ++ Sbjct: 98 DMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARAV 157 Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ T S + + P IKP + GSS+G+ + Q L + ++ H LL Sbjct: 158 TIHEGTSPSLAALEGELGLPLFIKPARQGSSVGVAKVHASQEFAGALAE--AFRHDRTLL 215 Query: 168 IEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY 206 E+++ G E+ V+ DA+ + EI +S FYSY+ KY Sbjct: 216 AEEFIVGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKY 260 >gi|300088095|ref|YP_003758617.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527828|gb|ADJ26296.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 336 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 27/260 (10%) Query: 52 DLAFNVLHGN---FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D FN+ G + + A+LE+L IPY+ + ++++DK +K++ GV Sbjct: 66 DFVFNIAEGRGTGRAREAQIPAVLEMLGIPYSGADPQTLSMALDKPLTKRLADFAGVSTP 125 Query: 109 PSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW- 160 +++N D+ +L + P IKP GSS GI + S + Sbjct: 126 AWLVLN----DTANLAVADWASLHFPVFIKPAFEGSSKGIRLNSLAASPAAAAAVAGRLL 181 Query: 161 -NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP------KSD---FYSYELKYSSLN 210 ++ +L+E+++DG E+TCG++G+ + +P ++D YS E+K N Sbjct: 182 GDYRQPVLVEEFIDGDEITCGLIGNTGQADNPMVLPLGILPHRADGPFIYSLEVKRDYRN 241 Query: 211 ST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + PA++P + +E+ R A + CR +R+DF D R F LEIN PG++ Sbjct: 242 RVEYQFPARLPAPVLEELTRQAVRVFDTLNCRDFARADFRIDRRGRPWF-LEINPLPGLS 300 Query: 270 PVSIFPEMAAYAGYSFRELL 289 S +A G+S EL+ Sbjct: 301 LDSDLYIIARGLGWSHAELI 320 >gi|881495|gb|AAA68950.1| unknown [Thermotoga maritima MSB8] Length = 128 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 13 VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 G FGEDG +QAIL+ L I YT S +S + DK+ Sbjct: 73 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKL 107 >gi|1814246|gb|AAB41853.1| D-Alanine:D-Alanine ligase [Streptococcus mitis] Length = 197 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 12/188 (6%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125 LE+L++PY IL+S+L+MDK+ +K+V+ S G+ P + + + + ++ Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 62 YPVFTKPSNMGSSVGI--SKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNY 119 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG G Sbjct: 120 DVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLG 178 Query: 243 ISRSDFLF 250 +SR DF + Sbjct: 179 LSRCDFFY 186 >gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis A/HAR-13] gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9768] gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11074] gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9301] Length = 803 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ +V D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780 >gi|27383340|ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110] gi|27356515|dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 22/251 (8%) Query: 53 LAFNVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + FN+ +G GE V A+LE+ +PYT S L AL++DK +KQ++ CGVP P+ Sbjct: 73 IVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQLIRDCGVPT-PN 131 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLL 167 V R +S + P V+KP +S G+ ++ + P L Q+ + L Sbjct: 132 FRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYE----PAQLRQAVEVIVTQYAQDAL 187 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK---------YSSLNSTHVLPAK 218 +E+Y++G E+ ++G+ L+ + + + DF E + + + + PA+ Sbjct: 188 VEEYIEGREICVALLGNGELEA--LPLVEQDFGERETRLITWEDKMHMAVVEPQKICPAQ 245 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + ++ ++ ++ +A CR +R D D S F LEIN + + + A Sbjct: 246 VGSNLATILRDISVATFRACRCRDYARVDIRID-RSGHPFVLEINSMAALGIGASYVLAA 304 Query: 279 AYAGYSFRELL 289 AGY+F L+ Sbjct: 305 KAAGYTFSSLV 315 >gi|7157925|gb|AAF37342.1|AF170803_1 D-alanine:D-alanine ligase [Enterococcus columbae] Length = 199 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L++PY +G+LASA MDK+ +K V+ + G+P P +L ++ Q + Sbjct: 1 FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQIFEQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI + + + L + +++IEQ ++ E+ V Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELDNAL---KELLYDTRVIIEQGIEAREIEVAV 117 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T EI V FY Y KY T +PA++P ++ ++ Q A A+ + Sbjct: 118 LGNEDVRTTVAGEI-VKDVAFYDYNSKYIDNKITMQIPAEVPQEVQEKAQEYAKKAYTML 176 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 177 GGSGLSRCDFFL 188 >gi|1814250|gb|AAB41855.1| D-Alanine:D-Alanine ligase [Streptococcus oralis] Length = 197 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 12/188 (6%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125 LE+L++PY IL+S+L+MDK+ +K+V+ S G+ P + V + + ++ Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 62 YPVFTKPSNMGSSVGI--SKSENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNY 119 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ V FY Y+ KY T +PAKI D+ ++ A A +AIG G Sbjct: 120 DVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLG 178 Query: 243 ISRSDFLF 250 +SR DF + Sbjct: 179 LSRCDFFY 186 >gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis Sweden2] gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/150] gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/11023] Length = 803 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ ++ D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLIIDG 780 >gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia trachomatis D/UW-3/CX] Length = 803 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ +V D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780 >gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276] gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276s] gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11222] Length = 803 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ +V D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780 >gi|758375|gb|AAA87682.1| putative D-alanine:D-alanine ligase [Lactobacillus plantarum] Length = 201 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 14/191 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---I 124 + +LL+ PY SG+LASA S DK +KQ+++ + ++V NR M +L + Sbjct: 1 LFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHV 60 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG 183 IKP GSS+GI + +Q LD L + ++ + ++L+E+ +D E+ C ++G Sbjct: 61 GDHLSIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYKILVEESIDNPREVECSILG 118 Query: 184 DASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + ++ I VPK+D FY Y + + T LP ++P D+ K +Q++ A +A+ Sbjct: 119 NENPKASKLGAIDVPKTDTFYDYNNMFVDASGVTFELPVELPADLTKRIQQMCVDAFRAL 178 Query: 239 GCRGISRSDFL 249 G +G++R DFL Sbjct: 179 GLKGMARVDFL 189 >gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC] gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC] Length = 833 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 480 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 538 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 539 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 598 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 599 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 658 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 659 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 717 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 718 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 772 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ +V D Sbjct: 773 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 810 >gi|2245422|gb|AAB62519.1| D-alanine:D-alanine ligase [Streptococcus anginosus SK52] Length = 197 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLI 124 LE+L++PY IL+S+++MDK+ +K+V++S G+P P + V + +L Sbjct: 2 LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLT 61 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGV 181 P + KP GSS+GI +S D L+S+ ++ + ++LIEQ V+ E+ G+ Sbjct: 62 YPVFT-KPSNMGSSVGI-----SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGL 115 Query: 182 MGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ A + V FY YE KY T +PAK+ D+ +++ A AIG Sbjct: 116 LGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIPAKLSEDVIATMRQYAEKRFHAIG 175 Query: 240 CRGISRSDFLF 250 G++R DF + Sbjct: 176 GVGLARCDFFY 186 >gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 803 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ +V D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780 >gi|20093140|ref|NP_619215.1| hypothetical protein MA4352 [Methanosarcina acetivorans C2A] gi|19918479|gb|AAM07695.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 703 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 23/268 (8%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K DL N+ F D + V A+LE IPYT +G + DK + + Sbjct: 373 KTDLVLNLCDEGFNNDPIKELHVPALLEQFNIPYTGAGPQCLSFCYDKSLVRGAAREMRI 432 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNH 162 PV +LV + S +S P ++KP G SS GI ++ + I D+++ + Sbjct: 433 PVAKGVLVTGDSDVSSFSLSFPLLVKPNSGDSSYGITQKSIVHSREEI-FDIMKETREKI 491 Query: 163 G--DQLLIEQYVDGIELTCGVMGDAS----LDVTE---IAVPKS--DFYSYELKY---SS 208 G L+E+++ G +++ G++G+ L +TE AVP+ YE K+ S Sbjct: 492 GADKPFLLEEFLPGKDISVGIIGNPPFCTVLPITEEDYSAVPEDLPRICGYEAKWLPDSP 551 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P KE+ R +GCR +R D+ D R LE+N PG Sbjct: 552 YWKIKSVPAGLPEKTEKEIVRCCLALFTRLGCRDYARFDWRLDAEGRPKL-LEVNPNPGW 610 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +MAAYA S+ +L ++E A Sbjct: 611 CWDGHLAKMAAYANISYSGMLAAILEAA 638 >gi|330883773|gb|EGH17922.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 28 DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 DAG IDV L K D AF VLHG GEDG +Q +LE LEIPYT SG+LAS Sbjct: 3 DAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHGRGGEDGTMQGLLECLEIPYTGSGVLAS 62 Query: 88 ALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TMDSQHLISPPYVIKPLKGGSSLGI 141 AL+MDK+R+KQV S G+ ++L N + + + P ++KP GSS+G+ Sbjct: 63 ALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSIGM 118 >gi|7157939|gb|AAF37349.1|AF170810_1 D-alanine:D-alanine ligase [Enterococcus sulfureus] Length = 200 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 13/191 (6%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE+L++PY +G++ SA MDK+ +K ++ + G+P P +L +++ + + + Sbjct: 1 FLEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQVFEQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI K + + L + ++ + +++IEQ ++ E+ V Sbjct: 61 GSLLYPMFVKPANMGSSVGI--SKAENRLELQAALAEAYKYDSRVVIEQGIEAREIEVAV 118 Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + T V FY Y KY N +PA++ ++ ++ Q A A+ +G Sbjct: 119 LGNEDVRTTAAGEIVKDVAFYDYNSKYIDNNIEMQIPAQVSDEVQQKAQEYAKKAYIMLG 178 Query: 240 CRGISRSDFLF 250 G+SR DF Sbjct: 179 GSGLSRCDFFL 189 >gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70] gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s] Length = 803 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E E+S+ S K A L + + VS + R GL Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508 Query: 45 -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + L K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568 Query: 99 VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 +S G+PV P + + + H++ S P +K GSS+G+ + Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 + D + + D + E + E+ V+GD S + + F Y+ K Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259 Y S +S ++ D+ KE+Q A ++ + +G R DF D FW Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L E+N PGMT S F G+S+ +++ ++ D Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLIIDG 780 >gi|294101201|ref|YP_003553059.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293616181|gb|ADE56335.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 367 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 20/299 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAIL 72 L + +A ++ + GF+V + + + L + PD N+ G N+ G + V IL Sbjct: 50 LETVEALSNEIASLGFQVFLFEQNELLLQKLDSIAPDFVLNIAEGLGNYRGRESQVPCIL 109 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPP 127 E L IP++ S + A+++DK+ + V+ + +P P V + D+ Sbjct: 110 ESLNIPFSGSDSASLAIALDKVLTSHVLRASNIPA-PKNYVAKLPQDTTEKKVIFNTCQK 168 Query: 128 YVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDA 185 Y+IKP GSS GI + D + W +Q ++E+++ GIE+T GV G+ Sbjct: 169 YIIKPRWEGSSKGIFLDSIADTPEKVKTCIKRIWERYNQPAIVEEFLPGIEITAGVAGNT 228 Query: 186 S------LDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAI 238 + +T + S YS E K + L + P + + K++ LA A +A+ Sbjct: 229 QPKCIGMMSITPVTENSSFLYSLEEKRNYLERIRYSGPDSMSPQLRKKIGDLAVRAFKAL 288 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 R I+R DF D + ++IN PG++P S P + +G + EL+ ++ +A Sbjct: 289 ELRDIARIDFRLDDKGQPRV-IDINPLPGLSPAYSDLPILYRLSGGEYSELIQTILREA 346 >gi|78358082|ref|YP_389531.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220487|gb|ABB39836.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 349 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 17/258 (6%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D+ FN+ G FG + V A+L+ +PY S + + + K +K +V G+P Sbjct: 66 DIVFNIAEGCHGFGRESQVPALLDYYSVPYVFSDPMTLGICLHKGMTKHIVRDNGIPTAD 125 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQL 166 ++++ + + P +KP+ G+ +G+ K Q+ P +L + + H + Sbjct: 126 FVVISDPAEAAAVSLPYPLFVKPVAEGTGIGVGAASKVQN-PQELAAACARLIDRHRQPV 184 Query: 167 LIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 L+E ++ G ELT G+ G +L+V +SD Y Y K L A Sbjct: 185 LVETFLCGRELTVGITGTGAGARTLGALEVVFAPAAESDVYGYVNKAEYLERVQYHLAD- 243 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMA 278 D K + +A A +A+GCR R D FD F +E+N G+ PV S P M Sbjct: 244 DADAQK-ARHVALAAWRALGCRDGGRVDLRFDARGVPNF-IEVNPLAGLNPVNSDLPIMC 301 Query: 279 AYAGYSFRELLLWMVEDA 296 AG + +L+ ++E A Sbjct: 302 YKAGLRYEQLIGQIMESA 319 >gi|166240878|ref|ZP_02240750.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPP 127 IPY +G+LASA+ MDK+ K+V + +P C R F M + I P Sbjct: 2 IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 61 Query: 128 YVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 IKP GSS+GI + +D+ I ++ + +++IE++V+ E+ V+G+ Sbjct: 62 CFIKPANLGSSVGISKARNRDELIKA---VEEAFKYDRKVIIEEFVEAREIEVAVLGNEE 118 Query: 187 LDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +V+ I+ SDFY Y+ KY NS V+PA IP + ++Q + I Sbjct: 119 PEVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQEXXIXXFKXIXXSX 178 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +S DF + IN P TP Sbjct: 179 LSXLDFFMRNSXXHIXINXINTXPXFTP 206 >gi|157375059|ref|YP_001473659.1| D-alanyl-alanine synthetase A [Shewanella sediminis HAW-EB3] gi|189083056|sp|A8FUK8|DDL_SHESH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157317433|gb|ABV36531.1| D-alanine--D-alanine ligase [Shewanella sediminis HAW-EB3] Length = 333 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 20/252 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ EL+ +PY AS +K+ +K S+ G+P P I Sbjct: 79 DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKVTAKMWFSALGIPNTPYI 138 Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNH 162 +N F D+ Q L + V IK GSS+G + +D L SS ++++ Sbjct: 139 FLNEFNDDAISQTEQALETWGSVFIKAASQGSSVGCYRVDS-----IDELASSLKEAFSY 193 Query: 163 GDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPA 217 +++E+ + EL D + T EI + FY+++ KY++ + + A Sbjct: 194 SPYVVVEKTIHARELEVAAYELDGEIVATKPGEIICASNTFYTFDEKYAADSQAETKVEA 253 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 I ++ +E++ A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 254 DISDELSREIREYAVKVFKGMKLSHLSRIDFFLTD-ENEILLNEINTFPGLTPISMFPKM 312 Query: 278 AAYAGYSFRELL 289 G F E L Sbjct: 313 LQNHGDDFTEYL 324 >gi|57790304|gb|AAW56079.1| vancomycin resistance protein A [Enterococcus faecium] Length = 205 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 9/194 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 14 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 73 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G V K + + LD S+ + ++LIEQ Sbjct: 74 VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 131 Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224 V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA + + Sbjct: 132 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 191 Query: 225 KEVQRLAFLAHQAI 238 +Q A ++A+ Sbjct: 192 GRIQETAKKIYKAL 205 >gi|325981999|ref|YP_004294401.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] gi|325531518|gb|ADZ26239.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] Length = 361 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 30/309 (9%) Query: 7 GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGN 61 G+ ER S A A+ALE G V IDV + + L K DL FN G Sbjct: 16 GMEDERYGEFESPATIAAVATALERVGADVEVIDVGKDIYHQLEKRKHQIDLVFNNAEG- 74 Query: 62 FGEDGLVQAIL----ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 E L +AI+ E L IPYT S MDK +K++V+ GVP L+ Sbjct: 75 LEEKELREAIVPFFCEHLGIPYTGSSPKTFINKMDKATAKRIVAYEGVPTAKFQLM--VP 132 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQ-LLIEQYVDGI 175 D ++ P ++KP G+S+GI K L ++ ++ DQ L+E+++ G Sbjct: 133 GDQLKDLTFPLMVKPYSEGTSIGISQKSKVHNEAELTAAIAAVYSQCDQAALVEEFLPGT 192 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-------DIYKEVQ 228 E T G++G+ L + EI ++ + L HV + P D + Sbjct: 193 EYTIGLIGNYVLPILEIN------FANIPGHPQLRDPHVKSIENPYISHMAWTDQARNFA 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGYSFRE 287 ++A AH+A+ R +R DF ++++LE NV PG+ P M + G + ++ Sbjct: 247 KMAIAAHEALEARDYNRMDFRVR--EGQLYFLEANVIPGIHPTDADLTNMCRHVGIAHQD 304 Query: 288 LLLWMVEDA 296 ++ +V+ A Sbjct: 305 MVALIVDKA 313 >gi|311351628|gb|ADP92999.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351630|gb|ADP93000.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V I+V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWIMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|2245426|gb|AAB62520.1| D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 197 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 16/190 (8%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125 LE+L++PY IL+S+++MDK+ +K+V++S G+P P + V + + ++ Sbjct: 2 LEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM 182 P KP GSS+GI +S D L S+ ++ + ++LIEQ V+ E+ G+ Sbjct: 62 YPVFTKPSNMGSSVGI-----SKSENKDELCSALKLAFKYDTRVLIEQGVNAREIEVGLF 116 Query: 183 GD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ A + V FY YE KY T +PAK+ D+ + A A AIG Sbjct: 117 GNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIATMCDYAEKAFHAIGG 176 Query: 241 RGISRSDFLF 250 G+SR DF + Sbjct: 177 VGLSRCDFFY 186 >gi|268679679|ref|YP_003304110.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946] gi|268617710|gb|ACZ12075.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946] Length = 344 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 15/273 (5%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 I+S+R S K A ++ GF ++ + + D+ N++HG GEDG Sbjct: 51 ITSKRFSSGEYKKDKALHVKQGGFYAKKMLGEEQISF-------DVMINLVHGRDGEDGK 103 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 + A+L+ IPY + A ++S +K+ +K GV V P L+++ + ++ I+ P Sbjct: 104 LSALLDFFGIPYIGPRMEACSISYNKLFTKLYAKEVGVNVLPYQLLHKGSNEAIS-IAYP 162 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS 186 +++KPL+ GSS+GI ++K+++ + L ++ D +LIE ++ G+ E S Sbjct: 163 FIVKPLRLGSSIGIGIVKEEKELAYAL--DVAFEFDDTVLIEPFISGVKEYNLAGCKTDS 220 Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + I P+ + F ++ KY + T V A + + + KE+Q + + + Sbjct: 221 FTFSIIEEPQKEAFLDFDKKYLDFSRTKRVNEASLEVTLEKEIQTSFIKLYDPLFLGALI 280 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 R DF + V+ EIN PG +F + Sbjct: 281 RCDFFV--IDGVVYLNEINPVPGSMANYLFDDF 311 >gi|328463794|gb|EGF35346.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462] Length = 252 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 52/254 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER VS+SSG +AL G + + ID+ Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 39 -------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132 + YT SG LAS ++M+K+ SK+V+ G+ R + +H + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G + + + + + + + ++E++ G E + GV+ + EI Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239 Query: 193 AVPKSDFYSYELKY 206 V S +Y ++ K+ Sbjct: 240 KV-HSGWYDFKHKF 252 >gi|269927660|gb|ACZ53133.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927664|gb|ACZ53135.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 17/213 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136 I+ASA+S DK +K+++S G+ P ++V NR + + +KP K G Sbjct: 1 NIVASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 61 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118 Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 D S V +L E N PG T +S++P+M +G Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|269927454|gb|ACZ53030.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927466|gb|ACZ53036.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927468|gb|ACZ53037.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927478|gb|ACZ53042.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927484|gb|ACZ53045.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927486|gb|ACZ53046.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927496|gb|ACZ53051.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927506|gb|ACZ53056.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927514|gb|ACZ53060.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927522|gb|ACZ53064.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927524|gb|ACZ53065.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927526|gb|ACZ53066.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927532|gb|ACZ53069.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927546|gb|ACZ53076.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927548|gb|ACZ53077.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927550|gb|ACZ53078.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927554|gb|ACZ53080.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927562|gb|ACZ53084.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927566|gb|ACZ53086.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927572|gb|ACZ53089.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927578|gb|ACZ53092.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927582|gb|ACZ53094.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927586|gb|ACZ53096.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927588|gb|ACZ53097.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927606|gb|ACZ53106.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927608|gb|ACZ53107.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927610|gb|ACZ53108.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927614|gb|ACZ53110.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927616|gb|ACZ53111.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927624|gb|ACZ53115.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927626|gb|ACZ53116.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927636|gb|ACZ53121.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927638|gb|ACZ53122.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927646|gb|ACZ53126.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927648|gb|ACZ53127.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927650|gb|ACZ53128.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927668|gb|ACZ53137.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927670|gb|ACZ53138.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927672|gb|ACZ53139.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927678|gb|ACZ53142.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927680|gb|ACZ53143.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 116/214 (54%), Gaps = 19/214 (8%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NR----FTMDSQHLISPPYVIKPLKG 135 I ASA+S DK +K+++S G+ P ++V NR ++ + L + +V KP K Sbjct: 1 NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFV-KPAKQ 59 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTE 191 GSS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 60 GSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGA 117 Query: 192 IAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 118 VRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFL 177 Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 D S V +L E N PG T +S++P+M +G Sbjct: 178 VD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|150391473|ref|YP_001321522.1| D-alanine--D-alanine ligase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951335|gb|ABR49863.1| D-alanine--D-alanine ligase domain protein [Alkaliphilus metalliredigens QYMF] Length = 714 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 146/313 (46%), Gaps = 20/313 (6%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKPDLAF 55 L G ++ E+ L + L G +V + D+++ V++ +P L F Sbjct: 17 LFGTLNREK-YGLETINKIKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVF 75 Query: 56 NVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 N+ +G G+ V ILE+L IPY SG A+++DK+ +K ++ G+P ++ Sbjct: 76 NLSYGIQGKGRYMHVPGILEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVM 135 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ + + + P ++KP S G+ ++ ++ + D +++ L+E+Y++ Sbjct: 136 DKPDSEIKDNLKYPLIVKPKDEAVSFGLKIVHNEEEL-RDGVKTIYEAFNTPTLVEEYIE 194 Query: 174 GIELTCGVMGDASLDV---TEIAVPKS-DFYSYELKYSSLNST--HVLPAKIPLDIYKEV 227 G E+ G++G+ ++ E+ + Y+YE K ++ T + PA + + +++ Sbjct: 195 GREINVGLLGNNPVEAMPPVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQI 254 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LA A+GC +R DF D + LE+N + F A G + Sbjct: 255 KQLAIDTFNALGCYDSARVDFRLDQEGNP-YILEVNSMASLGKSGSFVYAAEKMGLDYVA 313 Query: 288 LLLWMVEDASCLR 300 L+ ++ D +C R Sbjct: 314 LVNRLI-DVTCER 325 >gi|42794965|gb|AAS45838.1| putative D-alanine:D-alanine ligase [Clostridium difficile] gi|42794967|gb|AAS45839.1| putative D-alanine:D-alanine ligase [Clostridium difficile] Length = 141 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 10/134 (7%) Query: 124 ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 ++ P IKP++ GSS GI I K++ + +DL ++ H ++++IE+ +DG E+ C V Sbjct: 13 LTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----AFEHDNEVIIEENIDGFEVGCAV 68 Query: 182 MGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ L V EI + K F+ Y KY+ +S +PA+I LD K +Q A + ++ + Sbjct: 69 LGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIYRTL 127 Query: 239 GCRGISRSDFLFDP 252 GC G +R D P Sbjct: 128 GCSGFARVDMFLTP 141 >gi|229089127|ref|ZP_04220426.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] gi|228694192|gb|EEL47869.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] Length = 228 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 14/210 (6%) Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ K + + G+ R T + + ++ P +KP GSS+GI Sbjct: 1 MDKVVMKNIFAEAGLKQAKYASFIRSTWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI 60 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 K + LD ++ ++++E+ + G E+ GV+G+ + + VPK DF Sbjct: 61 NKCKDREE--LDNAFEEAFQFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDF 118 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF F +V+ Sbjct: 119 YDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDSAGLTRADF-FLTKDGEVYI 177 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 E+N PG TP S+FP + + + EL+ Sbjct: 178 NEVNTMPGFTPFSMFPLLWQHTNLPYPELI 207 >gi|269927476|gb|ACZ53041.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 17/213 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136 I ASA+S DK +K+++S G+ P I+V NR + + +KP K G Sbjct: 1 NIAASAMSFDKDLTKKIISQAGIRNTPYIVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 61 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118 Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 D S V +L E N PG T +S++P+M +G Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|21321301|dbj|BAB97388.1| D-alanine-D-alanine ligase [Pectobacterium chrysanthemi] Length = 368 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 29/288 (10%) Query: 24 SALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 SA D G +I+ D ++ + + + F HG +GEDG +Q L+ ++ PY S Sbjct: 65 SAFIDLGLNYKKIESTDNNLQYEINN--HNFVFIYAHGEYGEDGRLQGFLDYIDKPYPGS 122 Query: 83 GILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFTMDSQH---LISPPYVIKPLKGGS 137 G+LASA+ DK++ K ++ SS P + ++ D + P + K GGS Sbjct: 123 GVLASAVCCDKLKFKYLMTGSSVNTPNFYELNIHDSYSDVHKKALCLQYPIMAKERCGGS 182 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-------IELTCGVMGDASLDVT 190 SLGI I D+ L + N ++ +E+++ G +++ GV+ +L+ Sbjct: 183 SLGITYISNDE--DLHTWYEKNKNEINKYFLEKFISGRIISVGFVQMIEGVLILPTLE-- 238 Query: 191 EIAVPKSDFYSYELK--YSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V S++Y ELK +S + ++L +K +D ++++ A A + C+G+ R Sbjct: 239 --TVTNSNYYDAELKIGHSHHDVKYILNSFSSKEYID--RKIKETAIKAFEHAACQGVGR 294 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 D L + +F LEIN PG++ S F +M G+S+ EL++ + Sbjct: 295 VD-LIIDDNDDIFILEINTIPGISKNSNFTKMFTSLGFSYNELVIAFI 341 >gi|311351626|gb|ADP92998.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351632|gb|ADP93001.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351638|gb|ADP93004.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351684|gb|ADP93027.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|300863798|ref|ZP_07108724.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC 6506] gi|300338199|emb|CBN53870.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC 6506] Length = 329 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 20/283 (7%) Query: 30 GFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE--DGLVQAILELLEIPYTHSGILA 86 G KV +I R + L L + DL FN+ G G + V A+ EL PYT S L Sbjct: 45 GHKVERIGNGRELALRLVKGDRWDLIFNIAEGLKGRSREAQVPAVCELFAQPYTFSDPLT 104 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---V 143 AL++DK +K+VV G+P P +V+ + P +KP+ GSS GI + Sbjct: 105 CALTLDKAMTKRVVRDFGLPTAPFEVVSTSEQAIAISLPMPLFLKPIAEGSSKGITEKSL 164 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIA-VPKSD 198 +K+ Q + + + Q+ +L+E ++ G E+ G++G+ + + V EI K++ Sbjct: 165 VKESQDL-VAVYQALQEEFQQPVLVETFLPGKEIAVGIVGNGNQARVIAVMEIIFTKKAE 223 Query: 199 FYSYEL----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y KY S +L PL + ++LA + ++GC +R + D ++ Sbjct: 224 IAAYTALNKDKYLERVSYRLLTDPEPL--AAQARQLALDVYHSLGCLDAARVELRGD-VT 280 Query: 255 RKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 ++ +LE+N G+ P+ S MA AG + +L+ +VE A Sbjct: 281 GELQFLEVNPLSGIHPINSDLVIMARLAGIEYAQLIGEIVESA 323 >gi|42794963|gb|AAS45837.1| putative D-alanine:D-alanine ligase [Clostridium difficile] gi|42794969|gb|AAS45840.1| putative D-alanine:D-alanine ligase [Clostridium difficile] Length = 141 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 10/134 (7%) Query: 124 ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 ++ P IKP++ GSS GI I K++ + +DL ++ H ++++IE+ +DG E+ C V Sbjct: 13 LTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----AFEHDNEVIIEENIDGFEVGCAV 68 Query: 182 MGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ L V EI + K F+ Y KY+ +S +PA+I LD K +Q A + ++ + Sbjct: 69 LGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIYRTL 127 Query: 239 GCRGISRSDFLFDP 252 GC G +R D P Sbjct: 128 GCSGFARVDMFLTP 141 >gi|311351458|gb|ADP92914.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351460|gb|ADP92915.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351470|gb|ADP92920.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351480|gb|ADP92925.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351488|gb|ADP92929.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351490|gb|ADP92930.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351498|gb|ADP92934.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351568|gb|ADP92969.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351574|gb|ADP92972.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351586|gb|ADP92978.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|311351414|gb|ADP92892.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351416|gb|ADP92893.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351420|gb|ADP92895.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351428|gb|ADP92899.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351432|gb|ADP92901.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351434|gb|ADP92902.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351438|gb|ADP92904.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351442|gb|ADP92906.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351444|gb|ADP92907.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351448|gb|ADP92909.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351450|gb|ADP92910.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351454|gb|ADP92912.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351456|gb|ADP92913.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351464|gb|ADP92917.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351466|gb|ADP92918.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351468|gb|ADP92919.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351472|gb|ADP92921.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351474|gb|ADP92922.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351476|gb|ADP92923.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351478|gb|ADP92924.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351482|gb|ADP92926.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351484|gb|ADP92927.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351486|gb|ADP92928.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351492|gb|ADP92931.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351496|gb|ADP92933.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351504|gb|ADP92937.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351506|gb|ADP92938.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351508|gb|ADP92939.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351510|gb|ADP92940.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351512|gb|ADP92941.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351516|gb|ADP92943.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351520|gb|ADP92945.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351522|gb|ADP92946.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351524|gb|ADP92947.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351526|gb|ADP92948.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351528|gb|ADP92949.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351530|gb|ADP92950.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351532|gb|ADP92951.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351534|gb|ADP92952.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351536|gb|ADP92953.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351538|gb|ADP92954.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351540|gb|ADP92955.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351542|gb|ADP92956.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351546|gb|ADP92958.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351548|gb|ADP92959.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351550|gb|ADP92960.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351552|gb|ADP92961.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351554|gb|ADP92962.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351556|gb|ADP92963.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351558|gb|ADP92964.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351560|gb|ADP92965.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351562|gb|ADP92966.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351564|gb|ADP92967.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351566|gb|ADP92968.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351570|gb|ADP92970.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351572|gb|ADP92971.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351576|gb|ADP92973.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351580|gb|ADP92975.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351582|gb|ADP92976.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351584|gb|ADP92977.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351588|gb|ADP92979.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351590|gb|ADP92980.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351594|gb|ADP92982.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351596|gb|ADP92983.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351598|gb|ADP92984.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351604|gb|ADP92987.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351606|gb|ADP92988.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351608|gb|ADP92989.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351614|gb|ADP92992.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351616|gb|ADP92993.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351618|gb|ADP92994.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351620|gb|ADP92995.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351624|gb|ADP92997.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351634|gb|ADP93002.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351636|gb|ADP93003.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351652|gb|ADP93011.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351654|gb|ADP93012.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351656|gb|ADP93013.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351658|gb|ADP93014.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351660|gb|ADP93015.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351662|gb|ADP93016.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351664|gb|ADP93017.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351666|gb|ADP93018.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351668|gb|ADP93019.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351670|gb|ADP93020.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351672|gb|ADP93021.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351674|gb|ADP93022.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351676|gb|ADP93023.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351678|gb|ADP93024.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351680|gb|ADP93025.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351682|gb|ADP93026.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351686|gb|ADP93028.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351690|gb|ADP93030.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|311351418|gb|ADP92894.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351426|gb|ADP92898.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351452|gb|ADP92911.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351462|gb|ADP92916.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351494|gb|ADP92932.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 EGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|311351500|gb|ADP92935.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|269927452|gb|ACZ53029.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927456|gb|ACZ53031.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927460|gb|ACZ53033.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608] gi|269927462|gb|ACZ53034.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927464|gb|ACZ53035.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927470|gb|ACZ53038.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927472|gb|ACZ53039.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927474|gb|ACZ53040.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927480|gb|ACZ53043.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927482|gb|ACZ53044.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927488|gb|ACZ53047.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927490|gb|ACZ53048.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927492|gb|ACZ53049.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927494|gb|ACZ53050.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927498|gb|ACZ53052.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927500|gb|ACZ53053.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608] gi|269927502|gb|ACZ53054.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927504|gb|ACZ53055.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927516|gb|ACZ53061.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927518|gb|ACZ53062.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927520|gb|ACZ53063.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927528|gb|ACZ53067.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927530|gb|ACZ53068.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927536|gb|ACZ53071.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927538|gb|ACZ53072.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927542|gb|ACZ53074.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927544|gb|ACZ53075.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927552|gb|ACZ53079.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927556|gb|ACZ53081.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927558|gb|ACZ53082.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927560|gb|ACZ53083.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927564|gb|ACZ53085.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927568|gb|ACZ53087.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927570|gb|ACZ53088.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927574|gb|ACZ53090.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927576|gb|ACZ53091.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927580|gb|ACZ53093.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927584|gb|ACZ53095.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927594|gb|ACZ53100.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927596|gb|ACZ53101.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927598|gb|ACZ53102.1| D-alanine-D-alanine ligase [Lactobacillus reuteri lpuph] gi|269927600|gb|ACZ53103.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927604|gb|ACZ53105.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927618|gb|ACZ53112.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927630|gb|ACZ53118.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927632|gb|ACZ53119.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927634|gb|ACZ53120.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927640|gb|ACZ53123.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927642|gb|ACZ53124.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927644|gb|ACZ53125.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927652|gb|ACZ53129.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927654|gb|ACZ53130.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927656|gb|ACZ53131.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927658|gb|ACZ53132.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927662|gb|ACZ53134.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927674|gb|ACZ53140.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927676|gb|ACZ53141.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927682|gb|ACZ53144.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 17/213 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136 I ASA+S DK +K+++S G+ P ++V NR + + +KP K G Sbjct: 1 NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 61 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118 Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 D S V +L E N PG T +S++P+M +G Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|624691|gb|AAA60988.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus casseliflavus] Length = 200 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE + +PY +G+L SA MDK+ +K ++ + G+P P +L N + + + + Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI + Q + L ++ + + ++EQ ++ E+ V Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRQELQNAL--QEAYRYDTRAIVEQGIEAREIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T EI V FY Y KY +PA+IP + + Q A A+ + Sbjct: 119 LGNEDVRTTMPGEI-VKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|289804450|ref|ZP_06535079.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 244 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + +P+ S +L+SA MDK +K+++ G+ + P I Sbjct: 84 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFI 143 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + R + + + P +KP GSS+G+ + + + + ++H + Sbjct: 144 TLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDH--K 201 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKY 206 +++EQ + G E+ C V+G+ + + V S+FY+Y+ KY Sbjct: 202 VVVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKY 244 >gi|1814252|gb|AAB41856.1| D-Alanine:D-Alanine ligase [Streptococcus salivarius] Length = 197 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 10/187 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLIS 125 LE L++PY + +L+S+++MDK+ +K ++ GVP V ++ + +++ ++ Sbjct: 2 LETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ Sbjct: 62 FPVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNT 119 Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 ++ T V FY Y+ KY T +PA +P ++ +++ A A +A+G G+ Sbjct: 120 TVKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGL 179 Query: 244 SRSDFLF 250 +R DF Sbjct: 180 ARCDFFL 186 >gi|1255017|gb|AAB17899.1| D-alanine:D-alanine ligase [Enterococcus dispar] Length = 200 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP--- 126 LE +++PY +G+L SA MDK+ +K ++ + G+P P +L N + + + + Sbjct: 2 LETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQIFEQCEG 61 Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS+GI K + L ++ + + ++EQ ++ E+ ++ Sbjct: 62 TLLYPMFVKPANMGSSVGI--SKAENREELQNALQEAYKYDTRAIVEQGIERGEIEVAIL 119 Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G+ + T EI V FY Y KY +PA+IP D+ ++ Q A A+ +G Sbjct: 120 GNEDVRTTLPGEI-VKDVAFYDYNSKYIDNQIIMQIPAEIPEDVQQKAQDFAKKAYVMLG 178 Query: 240 CRGISRSDFLF 250 G+SR DF Sbjct: 179 GSGLSRCDFFL 189 >gi|260461867|ref|ZP_05810113.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|319785391|ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032508|gb|EEW33773.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|317171279|gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 340 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 129/285 (45%), Gaps = 23/285 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------DLAFNVLHGNFGE--DGLVQ 69 ++ +AL++ G + D D+ + L P + FN+ G+ GE + V Sbjct: 32 ESVVAALQEGGHETLICDGDKGLLATLERFMPPDRQSRPSGIVFNLAWGSQGERPEAGVP 91 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A+LE+ +P T G L L+ DK+ K+++ GVP P+ V R ++ + P V Sbjct: 92 AMLEMAGVPCTGPGPLGYGLAFDKVIIKRLIRDRGVPT-PNFRVMRLGTETTGDLRFPLV 150 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDAS 186 +KP +S G+ + + P L Q+ + L+E+Y+DG E+T ++G+ Sbjct: 151 VKPRYECASFGLQLAHE----PAQLRQAVEVIVTLYAQDALVEEYIDGREITVALLGNRE 206 Query: 187 LDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L+V + + + DF E + + P +I + +Q ++ CR + Sbjct: 207 LEV--LPLVEYDFRDREKRCLTREAKQRRICPGQIGSRLATVLQDISVATFLECQCRDYA 264 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R D D S + F LEIN P + + + A AGY+F L+ Sbjct: 265 RVDLRID-RSGQAFVLEINNMPSLRMRASYVLAARTAGYTFSSLV 308 >gi|330884029|gb|EGH18178.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 91 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 48/86 (55%), Positives = 54/86 (62%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 6 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILA 86 GEDG +Q +LE LEIPYT SG+LA Sbjct: 66 RGGEDGTMQGLLECLEIPYTGSGVLA 91 >gi|195940920|ref|ZP_03086302.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] Length = 147 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDI 223 ++EQ ++G E+ C V+G+ + V SDFYSY+ KY + V+PA + D+ Sbjct: 1 MVEQGINGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVPAALDPDV 60 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ +A A QA+GC G++R D P +V EIN PG T +S++P++ +G Sbjct: 61 NDRIRAIAIEAWQALGCSGMARVDVFLTP-DNEVVINEINTLPGFTNISMYPKLWQASGI 119 Query: 284 SFRELLLWMVE 294 S++EL+ ++E Sbjct: 120 SYQELITRLIE 130 >gi|109947256|ref|YP_664484.1| D-alanyl-alanine synthetase A [Helicobacter acinonychis str. Sheeba] gi|123066260|sp|Q17XZ1|DDL_HELAH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|109714477|emb|CAJ99485.1| D-alanine-D-alanine ligase [Helicobacter acinonychis str. Sheeba] Length = 350 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 49/323 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 4 FCVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEASNMHSKYFAQIKE 63 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + S + Sbjct: 64 KKLPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGSRVE 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISP----PYVIKPLKGGSSLG 140 AS LS +K +K + GV IL+N + ++ LI P P+++KP GSSLG Sbjct: 124 ASVLSYNKHLTKLYAKNLGVKTLDCILLNEKNRANALDLIKPSFNFPFIVKPNNAGSSLG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196 + V+K+++ + L ++ + ++LIE ++ ++ C + D E K Sbjct: 184 VSVVKEEKELAYAL--DGAFEYSKEVLIEPFIQRVKEYNLAGCKIKEDFCFSYVE-EPNK 240 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +F ++ KY + T A IP + ++++ + + I R DF + + Sbjct: 241 QEFLDFKQKYLDFSRTKAPKANIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNE 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279 V+ EIN PG +F + Sbjct: 299 VYLNEINPIPGSLANYLFDDFKT 321 >gi|269927458|gb|ACZ53032.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927508|gb|ACZ53057.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927510|gb|ACZ53058.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927512|gb|ACZ53059.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927534|gb|ACZ53070.1| D-alanine-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|269927540|gb|ACZ53073.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927590|gb|ACZ53098.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927592|gb|ACZ53099.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927612|gb|ACZ53109.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927622|gb|ACZ53114.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927628|gb|ACZ53117.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927666|gb|ACZ53136.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 114/216 (52%), Gaps = 23/216 (10%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPL 133 I ASA+S DK +K+++S G+ P ++V T ++Q S + +KP Sbjct: 1 NIAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPA 57 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDV 189 K GSS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 58 KQGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKL 115 Query: 190 TEIAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R D Sbjct: 116 GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARID 175 Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 FL D S V +L E N PG T +S++P+M +G Sbjct: 176 FLVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|269927602|gb|ACZ53104.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927620|gb|ACZ53113.1| D-alanine-D-alanine ligase [Lactobacillus reuteri mlc3] Length = 210 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 17/213 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136 I ASA++ DK +K+++S G+ P ++V NR + + +KP K G Sbjct: 1 NIAASAMAFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192 SS+GI + + L + +++ ++L+EQ + + E+ ++G+ + + + Sbjct: 61 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118 Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178 Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282 D S V +L E N PG T +S++P+M +G Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209 >gi|301511265|ref|ZP_07236502.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058] gi|301597563|ref|ZP_07242571.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059] Length = 170 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 6/163 (3%) Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T + L V Sbjct: 1 IKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPV 58 Query: 190 TEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + P FY YE KY + + +P + K++Q L A QA+G G R D Sbjct: 59 IRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDA 118 Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + D + FWL E+N PGMT S+ P+ A GYSF EL + Sbjct: 119 MQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCV 159 >gi|311351436|gb|ADP92903.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351440|gb|ADP92905.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351446|gb|ADP92908.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351502|gb|ADP92936.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351514|gb|ADP92942.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351518|gb|ADP92944.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351544|gb|ADP92957.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351578|gb|ADP92974.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351650|gb|ADP93010.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351688|gb|ADP93029.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + ++ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|311351424|gb|ADP92897.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351430|gb|ADP92900.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351592|gb|ADP92981.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ +++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|255322239|ref|ZP_05363385.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277] gi|255300612|gb|EET79883.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277] Length = 344 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 ++ D+ N++HG GEDG + A+LE + Y + ASALS +K +K + GV Sbjct: 84 KIEADVFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEASALSYNKELTKLLAQKAGVKT 143 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 +V+R S L P ++KPL+ GSS+G+ VIK + L ++ ++L Sbjct: 144 LNYEVVSREKAPSLPL---PVILKPLRLGSSIGVSVIKDAGELEYGL--DVAYEFDKEIL 198 Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPLDI 223 +E +++G++ G D + + I P K +F YE KY S N + A I ++ Sbjct: 199 VEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQKYMSFSNESRAREANISAEL 258 Query: 224 YKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ +F G G + R DF ++ +V+ EIN PG +F + Sbjct: 259 AAKLKQ-SFERIYDCGFNGALIRCDFF--EVNGEVYLNEINPNPGSMANYLFDDF 310 >gi|624693|gb|AAA60989.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus casseliflavus] Length = 200 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 15/192 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE + +PY +G+L SA MDK+ +K ++ + G+P P +L N + + + + Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI K + L ++ + + ++EQ ++ E+ V Sbjct: 61 GSLLYPMFVKPANMGSSVGI--SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAV 118 Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 +G+ + T EI V FY Y KY +PA+IP + + Q A A+ + Sbjct: 119 LGNEDVRTTMPGEI-VKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTML 177 Query: 239 GCRGISRSDFLF 250 G G+SR DF Sbjct: 178 GGSGLSRCDFFL 189 >gi|186685649|ref|YP_001868845.1| D-alanine--D-alanine ligase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186468101|gb|ACC83902.1| D-alanine--D-alanine ligase domain protein [Nostoc punctiforme PCC 73102] Length = 348 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 33/250 (13%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +A+ +LL+IPY + A++ K R+K +V + GV V L+ + + + I+PP Sbjct: 100 RALFDLLKIPYIGNTPDIMAIAAHKARAKAIVEAAGVKVPRGELLRQGDIPT---ITPPA 156 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM-GDAS 186 V+KP+ +SLG++++K D ++ + ++++E +++ G E+ CG++ D Sbjct: 157 VVKPVSSDNSLGVVLVK--DVTEYDAALKKAFEYASEVIVEAFIELGREVRCGIIVKDGE 214 Query: 187 LDVTEIAVPKSDF-----------YSYELKYSSLNSTHVLPAKI--------PLD-IYKE 226 L I +P ++ Y+ +L+ + H L AK P D I ++ Sbjct: 215 L----IGLPLEEYLVDPHDKPIRNYADKLQQTDDGDLH-LTAKDNIKAWILDPNDPITQK 269 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 VQ++A HQA+GCR S DF DP + F LE + P S+ MA AG Sbjct: 270 VQQVAKRCHQALGCRHYSLFDFRIDPKGQPWF-LEAGLYCSFAPKSVISSMAKAAGIPLN 328 Query: 287 ELLLWMVEDA 296 +LL+ + + Sbjct: 329 DLLITAINET 338 >gi|758373|gb|AAA87681.1| putative D-alanine:D-alanine ligase [Lactobacillus leichmannii] Length = 206 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 + L++ P+ +LA+ ++MDK +K + GVPV + + R+ + Sbjct: 1 LFRLIDKPFVGVDVLAARVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDW 60 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 S L + +KP GSS+GI + D + L + ++ + D++L+E+ + G E+ Sbjct: 61 VSGQLGTTNLFVKPSNQGSSVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVE 118 Query: 179 CGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLA 234 V+G+ V I + +YSYE KYS+ ++T + +PA+IP + ++VQ A Sbjct: 119 TAVLGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKI 178 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEI 262 +Q C G++R D + +V + E+ Sbjct: 179 YQITECSGMARIDSMLRESDGEVIFNEL 206 >gi|311351422|gb|ADP92896.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V +V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + K+ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|297583027|ref|YP_003698807.1| D-alanine--D-alanine ligase domain-containing protein [Bacillus selenitireducens MLS10] gi|297141484|gb|ADH98241.1| D-alanine--D-alanine ligase domain protein [Bacillus selenitireducens MLS10] Length = 714 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 26/311 (8%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--------GLVLAHLKPDLAFNVL 58 G + + L + K L+ G +V + D+++ V++ +P L FN+ Sbjct: 19 GTPNREKYGLETIKKIKDGLQSLGHQVKTFEGDKNIIAKLEEFMPSVISGERPGLVFNLS 78 Query: 59 HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 +G G+ V ILE++ +PY SG AL++DK+ +K ++ G+P + + Sbjct: 79 YGIQGKGRYMHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPRFAELEKP 138 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P ++KP S G+ ++ ++ + D +++ L+E+Y++G E Sbjct: 139 DSPITAELTYPLIVKPKNEAVSFGLKIVHNEEEL-RDGVKTIYDTFQSPTLVEEYIEGRE 197 Query: 177 LTCGVMGDASLDVTEIAVPKSDF--------YSYELKYSSLNS--THVLPAKIPLDIYKE 226 + G++G+ ++ A+P + ++YE K S S V PA + ++ ++ Sbjct: 198 VNVGLLGNNPVE----ALPPVELVFGDGPQIFTYEDKTSGQGSRVQKVCPAPLDDELMEK 253 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V++LA A+ C +R DF D + + LE+N + F A G S+ Sbjct: 254 VKQLAIDTFHALNCFDTARVDFRIDK-NGNPYILEVNSMASLGADGSFVYAAQTLGMSYA 312 Query: 287 ELLLWMVEDAS 297 E++ +VE S Sbjct: 313 EIMNRIVEVTS 323 >gi|224372975|ref|YP_002607347.1| D-alanyl-alanine synthetase A [Nautilia profundicola AmH] gi|223589885|gb|ACM93621.1| D-alanine--D-alanine ligase [Nautilia profundicola AmH] Length = 344 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/318 (24%), Positives = 127/318 (39%), Gaps = 50/318 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 A+L GG S E E+S+ S ++ + ID +R++ LV Sbjct: 3 FALLFGGNSFEHEISIVSAITLKDKIKKHTLEFIYIDQNRNMYLVDKQNMKSKYFASGEY 62 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L D N++HG GEDG + ILE I Sbjct: 63 KNSQKIEITKGGFKYTKGLLKKDVFLNYDAVINLIHGKDGEDGKLAGILEFFNIKSITPN 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 + AS +S +K+ +K GV V ++ + + P +IKP + GSS+G+ V Sbjct: 123 VEASVISYNKVLTKAYAKEIGVNVIDYEII----TEPKSSFDFPIIIKPARLGSSIGVSV 178 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDF 199 +K + D + D ++ E +++GIE C G+ L E V KSDF Sbjct: 179 VKTQEE--FDYAFDVAREFDDLIIAEPFIEGIEEYNLAGCLAGGEFMLSNIE-KVEKSDF 235 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 +E KY + +V+ + + D+ + +++ + + I R DF S V+ Sbjct: 236 LDFEKKYMDFSRKNVMLSDVDKDLTERIKKTFKKIYNSTFKNAIIRCDFFVKEGS--VYL 293 Query: 260 LEINVQPGMTPVSIFPEM 277 EIN PG +F + Sbjct: 294 NEINPIPGSMANYLFDDF 311 >gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana] gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana] gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 519 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312 Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 V TE+ + PK + + Y KY + T+ P + P+ + K ++ Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372 Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274 A L Q +G R +R D + P+S + + +IN+ GM S Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +V A C R Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457 >gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 845 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312 Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 V TE+ + PK + + Y KY + T+ P + P+ + K ++ Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372 Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274 A L Q +G R +R D + P+S + + +IN+ GM S Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +V A C R Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ ++ S+ + H K A F +HG GEDG +Q +LE + YT G+L Sbjct: 598 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 657 Query: 86 ASALSMDKMRSKQVVSS 102 AS MDK+ + Q +S+ Sbjct: 658 ASRTCMDKVMTSQALSN 674 >gi|157363697|ref|YP_001470464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] gi|157314301|gb|ABV33400.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 334 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 19/266 (7%) Query: 46 LAHLKPDLAFNVLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L K D+ +N G + + V AIL IPYT S A+ +DK +KQ++ + Sbjct: 56 LTSEKVDIVYNFAEGTYSRAREAQVPAILSFYNIPYTGSDATTLAVCLDKALTKQILLTK 115 Query: 104 GVPVCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGI----IVIKKDQ-SIPLDLLQS 157 + P V R + + + P ++K GSS GI +V D+ +D L S Sbjct: 116 DIK-TPRFQVIRSPQEKLRKNMRFPLILKLNAEGSSKGISETGLVHNYDEYKKEIDRLFS 174 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPK-SDFYSYELKYSS-LNS 211 + + +L+E+++ G E T GV+ + + L + EI +FYSY++K +S Sbjct: 175 I---YSEPVLVEEFIRGREFTIGVLQEGNKYYVLPIMEIHFKHGKEFYSYKVKKNSDYYV 231 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP- 270 + PAKI L + ++++ +A + + + ++R D ++LEIN PGM Sbjct: 232 DYTCPAKIDLMLERKLKNMAVKICKTLEIKDVARMDLRVSQEDNNPYFLEINPLPGMARG 291 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S P +A A ++ EL+L ++E+A Sbjct: 292 FSDLPRIAEVADLTYEELILHVLENA 317 >gi|119512131|ref|ZP_01631223.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414] gi|119463221|gb|EAW44166.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414] Length = 350 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 23/245 (9%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +A+ +LL+IP + A++ K R+K +V++ GV V L+ + + I+PP Sbjct: 100 RALFDLLKIPCVGNSADIMAIASHKARTKAIVAAAGVKVPRGELLRPGDVPT---ITPPV 156 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM---GD 184 VIKP+ +SLG+ ++K+ L +++ + D++++E +++ G E+ CG++ GD Sbjct: 157 VIKPVSSDNSLGVALVKEASDYEAAL--QTAFEYADEVIVETFIELGREVRCGIIVKDGD 214 Query: 185 A---SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKI--------PLD-IYKEVQRLA 231 L+ ++ + SY K + ++ AK P D I K VQ +A Sbjct: 215 LVGLPLEEYKLDPDEKPIRSYADKLQKTDDGNLSFSAKDNMKSWIVDPSDPITKRVQEVA 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + HQA+GCR S DF DP + F LE + P S+ MA AG EL + Sbjct: 275 KMCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFAPKSVISCMAIAAGIPLNELFMT 333 Query: 292 MVEDA 296 ++ + Sbjct: 334 VIHET 338 >gi|1262411|emb|CAA94438.1| D-alanine:D-alanine ligase-related protein [Streptococcus equinus] Length = 211 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 33 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 92 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 93 MIDKGDKPEAGTLTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 150 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 151 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 208 >gi|256371402|ref|YP_003109226.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331] gi|256007986|gb|ACU53553.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331] Length = 369 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 28/258 (10%) Query: 29 AGFKVSQIDVDRSVGLV--LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 AG + ++ V R G V L+P D+ N HG GEDG +Q L+L + Y Sbjct: 67 AGARPLELVVGRDGGFVEPRGGLRPKRELLELDVVVNCCHGGPGEDGALQGALDLAGVRY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T +AL MDK+ ++ G+ P R T D PY+ KP GGSS+ Sbjct: 127 TGPSARTAALGMDKLAFASLLRHHGIACLPREDGRRVTFDG------PYIAKPRFGGSSI 180 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY---VDGIELTCGVMGDASLDVTE---IA 193 GI V++ + + +S + D +++E Y + +++ +L E + Sbjct: 181 GIEVLEDRAQLEARMQRSEHFR--DGMVVEPYRPDLMDVQVALRRFPTPTLSAIERPLRS 238 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFL 249 P +Y KY + P ++P I E ++ LA + + RG+ R DFL Sbjct: 239 APGEPILTYREKYQPIGGMATAPRELPAAIAPELAETIRSLALSVGELLDSRGVMRVDFL 298 Query: 250 FDPLSRKVFWLEINVQPG 267 + + E+N PG Sbjct: 299 AS-TEGECYVNEVNTIPG 315 >gi|34556865|ref|NP_906680.1| D-alanyl-alanine synthetase A [Wolinella succinogenes DSM 1740] gi|39930816|sp|Q7MA71|DDL_WOLSU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|34482580|emb|CAE09580.1| PUTATIVE D-ALANINE--D-ALANINE LIGASE [Wolinella succinogenes] Length = 345 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 17/234 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D A N++HG GEDG + ++LE IP+ I AS +S +K +K GV P + Sbjct: 88 DTALNLIHGGDGEDGKLASLLEFFRIPFIGPRIEASVMSFNKHLTKLYAKERGVKTLPYL 147 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 L R + P ++KPL+ GSS+G+ + K Q LD ++ + L+E + Sbjct: 148 LA-RKNEKREFGNEFPLIVKPLRLGSSIGVSIAKNRQE--LDYALDVAFEFDEAALLEPF 204 Query: 172 VDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + GI+ C + G+ + E K +F ++ KY + T L + D+ + Sbjct: 205 MQGIKEYNLAGCKINGEYHFSIIE-EPQKKEFLDFDKKYLDFSRTQKL---LKADLSEAS 260 Query: 228 QRL---AFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +RL AF+ G + R DF +++VF EIN PG +F + Sbjct: 261 ERLLKEAFIKLYDDSFEGSLIRCDFFVQ--NQEVFLNEINPIPGSLANYLFEDF 312 >gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana] Length = 516 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 155/386 (40%), Gaps = 94/386 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS +D Sbjct: 77 VGLICGGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 136 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 137 DFKLESLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRE 196 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 197 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 256 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 257 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 309 Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 V TE+ + PK + + Y KY + T+ P + P+ + K ++ Sbjct: 310 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 369 Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274 A L Q +G R +R D + P+S + + +IN+ GM S Sbjct: 370 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 429 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +V A C R Sbjct: 430 FQQASKVGFSHSNILRTIVHRA-CSR 454 >gi|223040206|ref|ZP_03610485.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus RM3267] gi|222878567|gb|EEF13669.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus RM3267] Length = 344 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 13/235 (5%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 ++ D N++HG GEDG + A+LE + Y + ASALS +K +K + GV Sbjct: 84 KIEADAFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEASALSYNKELTKLLAQKAGVNT 143 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 +V+R S L P ++KPL+ GSS+G+ VIK + L ++ ++L Sbjct: 144 LNYEVVSRAKAPSLPL---PVILKPLRLGSSIGVSVIKDASELEYGL--DVAYEFDKEIL 198 Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPLDI 223 +E +++G++ G D + + I P K +F YE KY S N + A I ++ Sbjct: 199 VEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQKYMSFSNESRAREADIGAEL 258 Query: 224 YKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ +F G G + R DF ++ +V+ EIN PG +F + Sbjct: 259 AAKLKQ-SFERIYNCGFDGALIRCDFF--EVNGEVYLNEINPNPGSMANYLFDDF 310 >gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 937 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312 Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 V TE+ + PK + + Y KY + T+ P + P+ + K ++ Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372 Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274 A L Q +G R +R D + P+S + + +IN+ GM S Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +V A C R Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 71/332 (21%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ ++ S+ + H K A F +HG GEDG +Q +LE + YT G+L Sbjct: 598 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 657 Query: 86 ASALSMDKMRSKQVVS----------SCGVPVCPSILVNRFTMDSQHLISP----PYVIK 131 AS MDK+ + Q +S S V I+ F LI +K Sbjct: 658 ASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVK 717 Query: 132 PLKGGSSLGI--IVIKKDQSIPLDLLQSS---------SWNHG---------DQLLIEQY 171 P K G S G+ + +D ++ + L+ S HG + L+ E + Sbjct: 718 PAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPF 777 Query: 172 VDG---------------------IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY 206 V+ +E+T GV+G SL + D S E K+ Sbjct: 778 VETDEIIVSSKAKQQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKF 837 Query: 207 ---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 + +N T P + + + ++ L + +G G SR D + +V +E+N Sbjct: 838 QGGTGINLTPPPPTIMSKEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVN 897 Query: 264 VQPGMTPVSIFPEMA------AYAGYSFRELL 289 PGMTP ++ + A Y FR LL Sbjct: 898 TVPGMTPSTVLIQQALAEQPPMYPPQFFRTLL 929 >gi|1255015|gb|AAB17898.1| D-alanine:D-alanine ligase [Enterococcus cecorum] Length = 195 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126 LE L++PY +G+LASA MDK+ +K V+ + G+P P +L + D Q + Sbjct: 1 FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYVPVLAMHWKQDPQLIFEHCE 60 Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP GSS+GI K + L+ + ++ + + +IEQ GIE+ Sbjct: 61 GSLLYPMFVKPANMGSSVGI--SKAENRDELEAALNEAFLYDTRGIIEQ---GIEVAVLE 115 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 M + + V FY Y KY +PA++P ++ ++ Q A A+ +G Sbjct: 116 MKNVRTTMAGEIVKDVAFYDYNSKYIDNKIVMQIPAQVPDEVQQKAQEYAKKAYTMLGGS 175 Query: 242 GISRSDFLF 250 G+SR DF Sbjct: 176 GLSRCDFFL 184 >gi|115378993|ref|ZP_01466124.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115363997|gb|EAU63101.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 593 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 26/273 (9%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75 A A A+E G ++ + +V +A L+ PDL FN G G + A+ + L Sbjct: 28 ALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S A A+++DK +K +++ G+ V + + + + P ++KP Sbjct: 88 GFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNFE 147 Query: 136 GSSLGII---VIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 GSS GI + + + + Q+ + + G +L+E+Y+ G +LT + D Sbjct: 148 GSSKGITQDSIAETLDEVRAKVTQALAKYPAG--VLVEEYIGGKDLTVPFLAAVDNDYDG 205 Query: 192 IAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 + P K Y YELK ++ V PA I ++V+++A Q Sbjct: 206 VLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQV 265 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + CR + R DF F LEIN P + P Sbjct: 266 LDCRDLGRIDFRLSDAGVPYF-LEINALPSLEP 297 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77 +A A+ G +V ++ ++ + VLA D+ FN+ G G + V A+LELL+I Sbjct: 378 QAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQVPAMLELLDI 437 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT S ++++DK +K++V G+ P +L + ++ P ++KP+ Sbjct: 438 PYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTF--PLMVKPVAE 495 Query: 136 GSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 GSS G++ + ++ ++++ + + L+E+Y+ G E T G++G+ Sbjct: 496 GSSKGVVSKSVCHSEAELREVVKEIASKYKQPALVEEYIGGREFTVGLLGE 546 >gi|197111776|gb|ACH43043.1| D-alanine:D-lactate ligase VanB2 [Enterococcus faecium] Length = 202 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 26 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 85 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 86 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 143 Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222 + G E+ C VMG+ +V +I + F + E + S N+ +PA IP++ Sbjct: 144 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 201 >gi|58045580|gb|AAW65098.1| vancomycin resistance protein [Enterococcus gallinarum] Length = 156 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 87/157 (55%), Gaps = 10/157 (6%) Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123 DG +Q +LEL+ +PY + ASAL M+K Q+ + G+ P++L++R+ D + Sbjct: 1 DGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATID 60 Query: 124 -----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P IKP + GSS GI + ++ L ++++ +G +LI++ + GIE+ Sbjct: 61 RFIQDHGFPIFIKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIG 118 Query: 179 CGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTH 213 CG++G+ L + A+ D F+ +E KY +++T+ Sbjct: 119 CGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATN 155 >gi|268315712|ref|YP_003289431.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252] gi|262333246|gb|ACY47043.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252] Length = 336 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 19/283 (6%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIPYT 80 A+A+ G K +I + + L L+ D ++ G G + A + E+ IPY Sbjct: 43 AAAIRKLGHKPVRIGTAYDLLVELPDLRIDCGISIAEGARGRNREAYAPMLFEMAGIPYI 102 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISP-PYVIKPLKGGSS 138 S L +LS+DK +K +V++ GVP P +D L P P +KP GSS Sbjct: 103 GSDPLTLSLSLDKAWTKDLVAAAGVPTPPYRTYAGPEDVDPHDLPGPFPLFVKPRYEGSS 162 Query: 139 LGIIVIKKDQSIPLDLLQSS----SWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTE 191 GI K S L+ L+ + + ++++E +++G E T V+G+ L V + Sbjct: 163 KGITAASKVHS--LEALREQVARLTATYRQEVIVEPFIEGSEFTVAVIGNNPPEPLPVLQ 220 Query: 192 IAVPKSDFYS-YELKYSSLNSTHVLPAK--IPL--DIYKEVQRLAFLAHQAIGCRGISRS 246 AV + + L++ + L A +PL ++ + +Q+LA ++ + CR +R Sbjct: 221 RAVEATTGIGLHALEHRGMKPAAALEAAPYVPLTDELERCLQQLAVRVYEKLQCRDFARL 280 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF D K ++LEIN P P F +A + E L Sbjct: 281 DFRVD-REGKPWFLEINPLPTFAPDGTFAILAELMQRPYVEFL 322 >gi|296128393|ref|YP_003635643.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] gi|296020208|gb|ADG73444.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] Length = 333 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 21/262 (8%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 ++VGLV A D+ +HG GEDG + A+ +L + SG+ A A+ MDK +K V Sbjct: 73 QAVGLVAAC---DVLLPAVHGPRGEDGTLAALADLAGVACVGSGVRAGAVGMDKWVTKLV 129 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 ++ GV V LV ++ P P V+KP+ GSS G V + D L + Sbjct: 130 AAAVGVAVADGRLVRGV---AEACADPRLPAVVKPVSSGSSHG--VRRVDTVEDLADAVA 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF------YSYELKYSSLNS 211 ++ D++L+E+ V G E+ V+ A D T + P + + KY ++ Sbjct: 185 AALELDDRVLVEEVVTGREIDVAVLRRA--DGTTLVSPALEIGHAGAVFDTATKYDG-SA 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V+PA + + + A A+GC G++R+DF +R E+N PGMT Sbjct: 242 RFVVPAPLEPADAEALAAAALSVVDALGCDGVARADFFL--TARGPVLNEVNTMPGMTAH 299 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S P M A AG ++ EL+ +V Sbjct: 300 SQVPVMLAAAGLTYAELVAELV 321 >gi|311351600|gb|ADP92985.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351602|gb|ADP92986.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351610|gb|ADP92990.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351612|gb|ADP92991.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351622|gb|ADP92996.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351640|gb|ADP93005.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351642|gb|ADP93006.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351644|gb|ADP93007.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351646|gb|ADP93008.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|311351648|gb|ADP93009.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 196 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123 G VQ++L+ L IP++ G L+SA+ MDK +K++++ V +V+ +D + + Sbjct: 1 GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P IKP GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ Sbjct: 61 NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 L V I PK F+ KY + + ++ D++KEV+++A ++ + C Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176 Query: 243 ISRSDFL 249 +R D L Sbjct: 177 YARVDML 183 >gi|291286723|ref|YP_003503539.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290883883|gb|ADD67583.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 138/314 (43%), Gaps = 49/314 (15%) Query: 7 GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHG-- 60 G S E S + A +AL + G V +I ++ LA K DL FN+ G Sbjct: 21 GFSEEDTAEFDSEETISAIETALCECGHSVERIGNYFALHKKLAAQKSWDLVFNIAEGLY 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119 G + LV +L+ I YT S LA +L++ K +K ++ CGV +VN +D Sbjct: 81 GMGRESLVPCVLDAYGINYTFSDPLAISLTLHKGMAKHILKGCGVATADFAVVNNLGDID 140 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--------------Q 165 S +L P + KP G+ GI D+SI WN D Sbjct: 141 SINLGFPLFA-KPAAEGTGKGI----SDRSI--------VWNSADLKRVCTELLVRYSQP 187 Query: 166 LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPA 217 +L+E+ ++G E T G++G S+ V EI +P++ YSYE K N +L Sbjct: 188 VLVEKLLEGREFTVGIIGSGSEAVSVGVMEI-LPRNKEGIFVYSYENKE---NCESLLDY 243 Query: 218 KIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFP 275 + D +A A++A+GCR R D D +E+N PG+ P S P Sbjct: 244 SLVYGDTADRCADVALRAYRALGCRDAGRVDVRLDG-DGIANVIELNPLPGLHPTHSDLP 302 Query: 276 EMAAYAGYSFRELL 289 + AG S+R+L+ Sbjct: 303 MIWTKAGMSYRQLI 316 >gi|302341653|ref|YP_003806182.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075] gi|301638266|gb|ADK83588.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075] Length = 328 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 119/268 (44%), Gaps = 15/268 (5%) Query: 45 VLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +LA + DL FN+ G FG + V A+L+ Y S L +L++ K +K+VV Sbjct: 59 LLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHGQAYVFSDPLTLSLTLHKAMAKRVVRD 118 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSW 160 G+ +++ ++ ++ P KP+ G+ G+ K D + + Q Sbjct: 119 LGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEGTGRGVEAAGKVGDAAALAAVCQRLLA 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEIAVPKSDFYSYELKYSSLNSTH 213 +G +L+E ++ G E T GV+G S ++V +A +++ YSY K + Sbjct: 179 RYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVMEVILLARAEAEVYSYHNKENCEGLVR 238 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-S 272 A PL A AH+ +GCR SR D D R F +EIN G+ P S Sbjct: 239 YELADGPLAQACAAL--AVAAHRGLGCRDASRVDLRCDETGRPHF-MEINPLAGLCPGHS 295 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + AG + EL+ +V A R Sbjct: 296 DLPILCGLAGMGYDELIEAIVASALARR 323 >gi|317010958|gb|ADU84705.1| D-alanyl-alanine synthetase A [Helicobacter pylori SouthAfrica7] Length = 347 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 47/309 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEKSNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+LAH ++ L N++HG GEDG + ++LE I + + Sbjct: 63 KKLPPLMLAHNGLLKNSFLGTKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K S GV IL+N + ++ LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKHLTKLYAKSLGVKTLDHILLNEKNRANALDLINFNFPFIVKPNSAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+++++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVREEKELAYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A IP + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRAKAPKADIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVY 297 Query: 259 WLEINVQPG 267 EIN PG Sbjct: 298 LNEINPIPG 306 >gi|183221182|ref|YP_001839178.1| putative D-alanine--d-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911273|ref|YP_001962828.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775949|gb|ABZ94250.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779604|gb|ABZ97902.1| Putative D-alanine--d-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 329 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 24/266 (9%) Query: 42 VGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 G+ ++ K + +N + G + + A+ E L IP+T S L++DK ++K Sbjct: 56 AGIPKSNRKNWIVWNFIEGYLSPSREAYIPALCEYLGIPHTGSHAAVQTLTLDKYKTKLY 115 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQ---SIPL 152 ++S G+P S L++ + IS P +KP GSSLGI ++ KD +P Sbjct: 116 LASFGIPTLVSQLID--SESELPRISYPLFVKPNGEGSSLGITDANVIHSKDDWDTQVP- 172 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPK--SDFYSYELKYSSL 209 LL++ S LL+E Y+ G E+T G+MG+ + V IA K S Y +K S Sbjct: 173 KLLETFS-----PLLVEPYLSGEEVTVGIMGNQGNYQVLPIAYVKTPSGVYHEGIKSKS- 226 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 L +P + +++ ++ + +G G R DF + + K F+LE N PG + Sbjct: 227 EFLESLDFDLPNHLCSQIESISLQIAERLGSSGYLRIDFKLE--NEKPFFLEANATPGFS 284 Query: 270 PV-SIFPEMAAYAGYSFRELLLWMVE 294 + S P + +G S+ ELL + +E Sbjct: 285 HIYSTLPLLWERSGRSYSELLQYSLE 310 >gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] Length = 833 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------SQIDVDRSVGLVL 46 + ++ GG S E ++S+ S + A L + ++V S +++ G + Sbjct: 480 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 539 Query: 47 AH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K+ Sbjct: 540 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 599 Query: 100 VSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + + D + + S P +K + GSS+G+ + D + Sbjct: 600 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEV-HDTNE 658 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELK 205 D + + D + E + E+ +GD S V +A + F Y+ K Sbjct: 659 LRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGS-GVFFVAGMHERRGRGGFIDYQEK 717 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y L+ +D+ KE + +A ++ + +G R DF D + FWL Sbjct: 718 Y-GLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVD--NEGSFWLS 774 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PGMT S F G++ +++ +V D Sbjct: 775 EINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDG 810 >gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Nigg] gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Weiss] gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 802 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------SQIDVDRSVGLVL 46 + ++ GG S E ++S+ S + A L + ++V S +++ G + Sbjct: 449 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 508 Query: 47 AH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K+ Sbjct: 509 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 568 Query: 100 VSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + + D + + S P +K + GSS+G+ + D + Sbjct: 569 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEV-HDTNE 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELK 205 D + + D + E + E+ +GD S V +A + F Y+ K Sbjct: 628 LRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGS-GVFFVAGMHERRGRGGFIDYQEK 686 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260 Y L+ +D+ KE + +A ++ + +G R DF D + FWL Sbjct: 687 Y-GLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVD--NEGSFWLS 743 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PGMT S F G++ +++ +V D Sbjct: 744 EINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDG 779 >gi|207092530|ref|ZP_03240317.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_AG0C1] Length = 347 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-----------EDAGFKV-----------SQIDV 38 VL GG S E E+S+ S A AL E+ F + +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEETNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHNGLLKNSFLSTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +LVN + ++ LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDLCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|108563147|ref|YP_627463.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPAG1] gi|122980504|sp|Q1CTD3|DDL_HELPH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|107836920|gb|ABF84789.1| D-alanine:D-alanine ligase A [Helicobacter pylori HPAG1] Length = 347 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEASNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHKGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +L+N + ++ LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDHVLLNEKNRANAMDLINFNFPFIIKPNSAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELNYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + T A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|238497161|ref|XP_002379816.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357] gi|317146742|ref|XP_001821628.2| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40] gi|220694696|gb|EED51040.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357] Length = 360 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 42/312 (13%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74 ASALE G +V + +++ L+ H + DL FN G FG + V A+LE Sbjct: 41 NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL---ISPPYV 129 +IP+T S A +DK ++K ++ +P P ++V R +D L + P Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160 Query: 130 IKPLKGGSSLGI-----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 KP+ +S GI I+ K+D ++ L++ + ++L+E+++DG E T V+G Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQ--EILLEKFLDGREFTVAVLGS 218 Query: 185 AS----LDVTEIAV-----PKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYK 225 L V+E+ KSD S + S + H PA PL K Sbjct: 219 GDRARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPAD-PL--VK 275 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYS 284 E+ + A+QA+GC+ R D D V +E+N G+ P S+F +A G Sbjct: 276 EIAEIGLSAYQALGCKDGGRVDIRMDGAVPCV--IEVNPIFGLRPDHSLFTWIAKNNGME 333 Query: 285 FRELLLWMVEDA 296 +++++ +V++A Sbjct: 334 YQDIIAEIVDNA 345 >gi|217032140|ref|ZP_03437639.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128] gi|298736440|ref|YP_003728966.1| D-alanine-D-alanine ligase [Helicobacter pylori B8] gi|216946130|gb|EEC24739.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128] gi|298355630|emb|CBI66502.1| D-alanine-D-alanine ligase [Helicobacter pylori B8] Length = 347 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 47/309 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-----------EDAGFKV-----------SQIDV 38 VL GG S E E+S+ S A AL ED F + +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKDRIKHFIFLDEDHHFYLIEASNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + + Sbjct: 63 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142 AS LS +K +K ++ GV +L+ NR + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYANNLGVKTLGHVLLNEKNRANALDLMNFNFPFIIKPNSAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + KV+ Sbjct: 240 FLDFKQKYLDFSRAKSPKANLSSALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENKVY 297 Query: 259 WLEINVQPG 267 EIN PG Sbjct: 298 LNEINPIPG 306 >gi|83769491|dbj|BAE59626.1| unnamed protein product [Aspergillus oryzae] Length = 359 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 42/312 (13%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74 ASALE G +V + +++ L+ H + DL FN G FG + V A+LE Sbjct: 41 NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL---ISPPYV 129 +IP+T S A +DK ++K ++ +P P ++V R +D L + P Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160 Query: 130 IKPLKGGSSLGI-----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 KP+ +S GI I+ K+D ++ L++ + ++L+E+++DG E T V+G Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQ--EILLEKFLDGREFTVAVLGS 218 Query: 185 AS----LDVTEIAV-----PKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYK 225 L V+E+ KSD S + S + H PA PL K Sbjct: 219 GDRARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPAD-PL--VK 275 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYS 284 E+ + A+QA+GC+ R D D V +E+N G+ P S+F +A G Sbjct: 276 EIAEIGLSAYQALGCKDGGRVDIRMDGAVPCV--IEVNPIFGLRPDHSLFTWIAKNNGME 333 Query: 285 FRELLLWMVEDA 296 +++++ +V++A Sbjct: 334 YQDIIAEIVDNA 345 >gi|302035853|ref|YP_003796175.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii] gi|300603917|emb|CBK40249.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 340 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 25/289 (8%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLH---GNFGEDGLVQAILELLEI 77 S L G +V + V + ++ A + KP +AFN+L G D V + LEL+ I Sbjct: 38 STLRKLGHEVQPLGVKSDLEVIRAAVEDWKPHIAFNLLEEFDGRAVYDQNVVSYLELMRI 97 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG 136 PYT L+ DK +KQV+S +P ++V M + P P ++K + Sbjct: 98 PYTGCNPRGLMLARDKALAKQVMSYHRIPYPEFMVVPLHRMVRRPKYLPFPLIVKSISEE 157 Query: 137 SSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VT 190 +SLGI ++ D+ + + + N G L+E+Y++G EL GVMG+A L V Sbjct: 158 ASLGISQASIVDDDEKL-RERVAFIHDNVGTGALVERYIEGRELYVGVMGNAHLQVFPVW 216 Query: 191 EIAVPK---------SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240 E+ + K ++ + KY A+ +P + VQ LA ++A+G Sbjct: 217 ELVMDKMPEEARRIATERVKWSRKYQDKYGICSCEARNLPDGVVDHVQHLAKRVYRALGL 276 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G +R D D V+ LE N P + F + A A ++++LL Sbjct: 277 SGYARIDMRMDQ-DGNVYVLEANPNPQIASGEDFADSAEKADLAYKDLL 324 >gi|208434649|ref|YP_002266315.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27] gi|208432578|gb|ACI27449.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27] Length = 349 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG+S E E+S+ S A L+D +QI Sbjct: 5 FCVLFGGVSFEHEISIVSAIALKGVLKDRIKYFLFLDENHHFYLIEESNMHSKYFAQIKE 64 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 65 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ LI + P+++KP GSSLG+ Sbjct: 125 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIEFNFPFIVKPSNAGSSLGVN 184 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 185 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPSKQE 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 242 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 299 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 300 LNEINPIPGSLANYLFDDFKT 320 >gi|77165687|ref|YP_344212.1| hypothetical protein Noc_2222 [Nitrosococcus oceani ATCC 19707] gi|254434399|ref|ZP_05047907.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27] gi|76884001|gb|ABA58682.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090732|gb|EDZ68003.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27] Length = 354 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 33/316 (10%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 S+E ++ K L D ++ + +D ++ L PD N + Sbjct: 31 FSTEDLEAIDRAKEALGELRD--YQFTYLDNHSALLPQLIADPPDFVLNFCDTGYKNRAR 88 Query: 68 ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V A LE+L IPY+ + L DK + V + GVPV V+ ++ L Sbjct: 89 QELHVPAFLEMLGIPYSGARPACLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAIL 148 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-------GDQLLIEQYVDGIE 176 + P +IKP +G S+GI + S+ D Q+ ++ + LLI++++ G E Sbjct: 149 KNFPALIKPNRGDGSVGIT----ENSLVYDEPQAHAYINKLAMEFPNCDLLIQEFLPGDE 204 Query: 177 LTCGVMGDASLDVTEIAVPKSDF-------------YSYELKYSSLNSTHVLPAKIPLD- 222 + G++G+ S + + K D+ Y+ ++ +S T + AK +D Sbjct: 205 YSVGLLGNPSSGFKILPILKVDYSRLAAHRLPPILAYASKVDSASPYWTDIQYAKAAMDE 264 Query: 223 -IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + + + L + +GCR +R DF D + +V LE+N P MA +A Sbjct: 265 GLRQRLVGYCRLLFERLGCRDYARFDFRAD-VQGEVKLLEVNPNPAWCWDGKLNLMAGFA 323 Query: 282 GYSFRELLLWMVEDAS 297 GY + ELL W+++ A Sbjct: 324 GYRYGELLEWILQAAQ 339 >gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana] Length = 844 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 83/380 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDV---- 189 GSS+G+ + + SI L + D++++E ++ D E T V+ S V Sbjct: 260 GSSIGVKVAFGVNDSIKKATLILEGID--DRVVVEVFIEDAYEFTAIVLDVGSGSVCHPV 317 Query: 190 ----TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 TE+ + PK + + Y KY + T+ P + P+ + K ++ A L Q Sbjct: 318 VLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQ 377 Query: 237 AIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIFPEMAAY 280 +G R +R D + P+S + + +IN+ GM S + A+ Sbjct: 378 KLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASK 437 Query: 281 AGYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 438 VGFSHSNILRTIVHRA-CSR 456 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ ++ S+ + H K A F +HG GEDG +Q +LE + YT G+L Sbjct: 597 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 656 Query: 86 ASALSMDKMRSKQVVSS 102 AS MDK+ + Q +S+ Sbjct: 657 ASRTCMDKVMTSQALSN 673 >gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus 5a2] gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus 5a2] Length = 421 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 66/297 (22%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 LAHL D F LHG GEDG +QAILE +PY SG+ ++L++DK + + + G+ Sbjct: 112 LAHLV-DSVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKHGI 170 Query: 106 PVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGII----------- 142 V +V T+D +P P+++KP+ G S+ + Sbjct: 171 YVANQAVV---TIDQWKNNTPATIETIEATFKYPFIVKPVDDGCSVAVFKIQNKDMLIAY 227 Query: 143 ---VIKKDQSIPLDLLQ------SSSWNHGDQLLIEQYVDG------IELTCGVM----- 182 + + D + P +L Q ++++ + Q L+E ++ +E+T G++ Sbjct: 228 AENIFRADSNQPTNLTQVLGLKPNAAFPNYQQFLVEDLIEKGTATHFLEITGGLLTHLDE 287 Query: 183 -GDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK----------IPLDIYKEVQR 229 G+ ++ E + V D S E K+ + ++ PA+ I + +++Q+ Sbjct: 288 QGNRQYEMFEPSEVVATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQK 347 Query: 230 LAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +A Q + G +R D + P + + +EIN P +TP + A GY+ Sbjct: 348 VA----QLVNIEGYARIDAMVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYT 400 >gi|210134940|ref|YP_002301379.1| D-alanyl-alanine synthetase A [Helicobacter pylori P12] gi|226696388|sp|B6JLX1|DDL_HELP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|210132908|gb|ACJ07899.1| D-alanine:D-alanine ligase A [Helicobacter pylori P12] Length = 347 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 47/309 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEVLKDRIKHFIFLDENHHFYLIEASNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+LAH ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIKFNFPFIVKPSNAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYIE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPG 267 EIN PG Sbjct: 298 LNEINPIPG 306 >gi|170727019|ref|YP_001761045.1| D-alanyl-alanine synthetase A [Shewanella woodyi ATCC 51908] gi|169812366|gb|ACA86950.1| D-alanine--D-alanine ligase [Shewanella woodyi ATCC 51908] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ +L+++P+ +S+ +K+ +K S+ GVP P I Sbjct: 103 DYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNTPYI 162 Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N +S Q L + + IK GSS+G + + L Q+ S+ Sbjct: 163 FLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSF--SPY 220 Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220 +++E+ ++ EL + + T EI + FYS++ KY++ + + A + Sbjct: 221 VIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEADVS 280 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ +++Q A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 281 EEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKMLQN 339 Query: 281 AGYSFRELL 289 G F L Sbjct: 340 HGDDFTHYL 348 >gi|308184522|ref|YP_003928655.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180] gi|308060442|gb|ADO02338.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180] Length = 347 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K GV IL Sbjct: 90 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYIL 149 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ LI + P+++KP GSSLG+ V+K+++ + L S++ + ++LIE Sbjct: 150 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELNYAL--DSAFEYSKEVLIE 207 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + T A + + K Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEK 266 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + I R DF + +V+ EIN PG +F + Sbjct: 267 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318 >gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] Length = 943 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 154/385 (40%), Gaps = 93/385 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 81 VGLICGGPSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF 140 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 141 DFKLESLAQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRE 200 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 201 CIRAFDKYEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKA 260 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS- 186 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 261 GSSIGVKVAFGVNDSIKKAIELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 313 Query: 187 -------LDVTEIA--------VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 L TE+ + ++ + Y KY + T+ P + P+ + K ++ Sbjct: 314 SGCHPVVLMPTEVQLQFHGSGDLQENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 373 Query: 231 AFLAHQAIGCRGISR---------------SDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A L + +G R +R S+ L P S + + +IN+ GM S Sbjct: 374 ASLIFKKLGLRDFARIDGWYLAPNSNLSSASETLGGPESGDIIFTDINLISGMEQTSFLF 433 Query: 276 EMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +V A C R Sbjct: 434 QQASKVGFSHSNILRTVVHRA-CSR 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 72/302 (23%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RF 116 +HG GEDG +QA+LE + YT G+LAS MDK+ + Q +S +I + R Sbjct: 636 MHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMTSQALSHLSELGIHTISKDVRR 695 Query: 117 TMDSQHLISP-------------PYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSS--- 158 T D H P +KP K G S G+ + +D ++ + L+ Sbjct: 696 TEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVARLCCSEDLAVYVQALKDCLLR 755 Query: 159 ------SWNHG---------DQLLIEQYVDG---------------------IELTCGVM 182 S HG + L+ E +V+ +E+T GV+ Sbjct: 756 IPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSSKVKQQLSWKGRRRWVEMTVGVI 815 Query: 183 GDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFL 233 G SL + D S E K+ ++ P P + KE QR+ + Sbjct: 816 GKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPP-PTIMSKEALERCKQRIELI 874 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRE 287 A + +G G SR D + +V +E+N PGMTP ++ + A Y FR Sbjct: 875 A-ETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQPPMYPPQFFRT 933 Query: 288 LL 289 LL Sbjct: 934 LL 935 >gi|190359231|sp|B1KI99|DDL_SHEWM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 335 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 14/249 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D +HG GE G +Q+ +L+++P+ +S+ +K+ +K S+ GVP P I Sbjct: 79 DYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNTPYI 138 Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 +N +S Q L + + IK GSS+G + + L Q+ S++ Sbjct: 139 FLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSFS--PY 196 Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220 +++E+ ++ EL + + T EI + FYS++ KY++ + + A + Sbjct: 197 VIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEADVS 256 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ +++Q A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 257 EEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKMLQN 315 Query: 281 AGYSFRELL 289 G F L Sbjct: 316 HGDDFTHYL 324 >gi|317012549|gb|ADU83157.1| D-alanyl-alanine synthetase A [Helicobacter pylori Lithuania75] Length = 347 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + + Sbjct: 63 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +L+N + ++ +LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIIKPNSAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + T A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLAHYLFDDFKT 318 >gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii] gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii] Length = 857 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 36/281 (12%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE IP+ +G A+ + DK + + +S G PS Sbjct: 109 DIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRFGFVTIPSF 168 Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 L++ +D L+ S V+KP K GSS+G+ V + D Sbjct: 169 LIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKE 228 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDAS--------LDVTEIAVPKSD-------FYSYEL 204 D++++E ++ G E T ++ S L TE+ + +D ++Y Sbjct: 229 GIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHADGQSIGEKIFNYRR 288 Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK------- 256 KY + ++ P + P+ + ++ A + R +R D P S Sbjct: 289 KYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF 348 Query: 257 -VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + ++N+ GM S + AA G S R++L ++ A Sbjct: 349 LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRA 389 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 73/322 (22%) Query: 24 SALEDAGFKV-----SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLE 76 S L +G KV S + S+ + H K + + F +HG+ GE+G++Q +LE Sbjct: 511 SELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDEDAIVFIAVHGDIGENGILQEMLEAKG 570 Query: 77 IPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPSILVNRFTM-----DSQHLI---- 124 IP+T SG+ AS + MDK + + SS GV ++ + D++ L Sbjct: 571 IPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAQRVVYKTAELLHDCGDNRQLWLSLQ 630 Query: 125 ----SPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQ---------SSSWNHG------ 163 +KP G S G+ + +D ++ L L+ S HG Sbjct: 631 DKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIELPT 690 Query: 164 ---DQLLIEQYVDG-------------------IELTCGVMGDA----SLDVTEIAVPKS 197 D L+ E ++ +E+T GV+G +L + Sbjct: 691 TIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALHPSITLKESG 750 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFLAHQAIGCRGISRSDFLFDP 252 D S E K+ ++ P PL +E +R+ +A+ + G +R D + Sbjct: 751 DILSLEEKFQGGTGVNLTPPP-PLICSEEAVRSCRERIELVAN-TLQLEGFARIDAFMNV 808 Query: 253 LSRKVFWLEINVQPGMTPVSIF 274 + +V +E+N PGMTP ++ Sbjct: 809 DTGEVIVIEVNTVPGMTPSTVL 830 >gi|298378694|ref|ZP_06988578.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302] gi|298281028|gb|EFI22529.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302] Length = 96 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 56/91 (61%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSM 91 GEDG +Q +LEL+ +PYT SG++ASALSM Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 >gi|58201631|gb|AAW66892.1| vancomycin resistance protein B [Enterococcus faecium] Length = 166 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 11 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 70 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 71 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 128 Query: 172 VDGIELTCGVMGD 184 + G E+ C VMG+ Sbjct: 129 ISGCEVGCAVMGN 141 >gi|189083033|sp|A8Z6L3|DDL_CAMC1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158604979|gb|ABW74793.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter concisus 13826] Length = 346 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 19/236 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ N++HG GEDG + A+ E + Y + ASALS +K +K + GV Sbjct: 88 DVIINLIHGMDGEDGKIAALFEFYGVKYIGPRLEASALSYNKELTKFLAQKAGVKALDYE 147 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ R + H P ++KP + GSS+G+ V+ D L + ++ +L+E + Sbjct: 148 MLTRQSEPKFHY---PIILKPARLGSSIGVSVVHDDSE--LAYAKDVAFEFDKDVLVEPF 202 Query: 172 VDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKE 226 + G++ C + G + E K +F YE KY S N V A+I ++ Sbjct: 203 IKGVKEYNLAGCRIDGKIKFSIVE-EPKKKEFLDYEQKYLSFSNENKVKEAEISEEL--- 258 Query: 227 VQRLAFLAHQAIGC---RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 Q+L F + C I R DF + +V+ EIN PG +F + + Sbjct: 259 KQKLKFNFSKIYDCGFDGAIIRCDFFV--IDDEVYLNEINPNPGSLANYLFEDFES 312 >gi|161528516|ref|YP_001582342.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1] gi|160339817|gb|ABX12904.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1] Length = 743 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 74/309 (23%), Positives = 141/309 (45%), Gaps = 19/309 (6%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKPDLAFNVL 58 G++++ S + + A ALE G V I+ D + V++ KP + FN+ Sbjct: 43 GMTTKEHYSSKAVERVARALEKGGHSVKVIEGDIHLADELREFMPKVVSGEKPGMVFNMA 102 Query: 59 HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 +G G++ V A++E+L IPY SG A+ DK+ +K V+ +P P V + Sbjct: 103 YGIQGQNRYTHVPAMMEMLGIPYIGSGPAGHAIVQDKVMTKIVLQKNNIP-TPGFWVFKT 161 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D + P ++KP +S+G+ V+ + + ++ + +L+EQ++ G E Sbjct: 162 PDDKFDDLVFPVIVKPKLESTSMGMEVVDNWDDL-RNAVKVQIEKYQQDILVEQFISGRE 220 Query: 177 LTCGVMGDAS----LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G++G++ L + EI + D + K + PAK+ + + ++++ Sbjct: 221 FAVGLIGNSPNIEVLPIVEINLGDPDKIQTISDKKKTGGVDKTCPAKLSKEKTEYMKKIC 280 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+G +R DF D ++ LE+N + A AGY++ E L+ Sbjct: 281 IDAFTALGLNDYTRVDFRMDK-DENIYILELNSMASLGMGGSLFYAAKTAGYTY-ESLIN 338 Query: 292 MVEDASCLR 300 + D + +R Sbjct: 339 KILDVATMR 347 >gi|307322537|ref|ZP_07601883.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891819|gb|EFN22659.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 361 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 32/265 (12%) Query: 46 LAHL-KPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 LAHL + D F++L G GEDG +QA+ + +IP + +++ L+ DK V + Sbjct: 78 LAHLLRSDGVFVFSLLQGQDGEDGQIQALAQFYDIPGSFGDKVSAMLATDKYLQGIVANR 137 Query: 103 CGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + P V+ + + ++ P V+KP G S + + + D L Sbjct: 138 LCPELTPIPTVHVVQRNLELGFAKALRRLAGPCVLKPNTLGGSF---LTEYTDELSEDRL 194 Query: 156 QSSSWN---HGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSS 208 +S S H L+++ + G E TCGV+ D +L V I+ P S F Y+ K Sbjct: 195 RSYSERVALHDPSFLVQERIAGTEYTCGVLVDRHEVTALPVARISNP-SGFLGYDQKTQK 253 Query: 209 LNSTHVLPAKIPLDIYKEVQ-RLAFLAHQ---AIGCRGISRSDFLFDPLSRKVFWLEINV 264 S L D+ +Q RL+ ++ Q R DF+ D R +++LE+N+ Sbjct: 254 GYSVDFL------DVEDTIQSRLSSISKQIAREFRVHTFGRLDFIVDEQQR-IYFLELNL 306 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289 PG+T +IFP+M AG+ L+ Sbjct: 307 IPGLTAEAIFPKMLTKAGFDLCHLI 331 >gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1] gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1] Length = 663 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 22/261 (8%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K D FN+ F D V A+ E+ IPYT +G A A DK + + G+ Sbjct: 368 KVDYVFNLCDEGFNNDPRKELHVPALFEIYSIPYTGAGPQALAFCYDKSLVRGIAKEMGI 427 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQS--SSWN 161 PV + + + P ++KP G SS GI SI D++ S ++ Sbjct: 428 PVPDACFITPGDRTYDVGMKFPAIVKPNAGDSSYGITQESIAHSIEELSDIITSLRTTLG 487 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY---SS 208 + LL+E+++ G +++ G++G+ S + V + D+ + YE K+ S Sbjct: 488 YDRSLLVEEFLTGKDISVGIIGNPSGYSMVLPVIEEDYSALPPGLPRICGYEAKWLPDSP 547 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 PA +P + K + R + + CR R D+ D LE+N PG Sbjct: 548 YWKITSKPADLPEETEKAIVRCCLALFERLECRDYCRFDWRLDEHGNPKL-LEVNPNPGW 606 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 MA YAG ++ E+L Sbjct: 607 CWDGHLARMAKYAGLTYPEML 627 >gi|65319914|ref|ZP_00392873.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] Length = 110 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 62/100 (62%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKIL 109 >gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis] gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis] Length = 1000 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 130/302 (43%), Gaps = 61/302 (20%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE IP+ +G + DK + +S G P+ Sbjct: 171 DIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSSECRQAFDKYYASIELSKRGFITVPNF 230 Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIV-------IKKDQSIPLD 153 LV D L S V+KP GSS+G+ V +KK + + L+ Sbjct: 231 LVQGKEADESELFKWFASNRLDPTSGTVVVKPAVAGSSIGVTVAYGVADSLKKAKDLILE 290 Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS--------LDVTEIA--------VPK 196 + D++L+E ++D G E T V+ S L TE+ + + Sbjct: 291 GID-------DKVLVELFLDGGSEFTAIVVDVGSGFECHPVVLLPTEVELQFHGSADIRE 343 Query: 197 SD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +D ++Y KY + + P + P+DI K++++ A L Q + R +R D + P S Sbjct: 344 NDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQRLRLRDFARIDGWYLPSS 403 Query: 255 R----------------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + + +IN+ GM S + A+ G+S +L ++ A C Sbjct: 404 NSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIHRA-C 462 Query: 299 LR 300 LR Sbjct: 463 LR 464 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/312 (21%), Positives = 116/312 (37%), Gaps = 82/312 (26%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111 F +HG GEDG +Q++LE +PYT G++AS MDK+ + +S GV + Sbjct: 636 FIAVHGGIGEDGTLQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGV-----L 690 Query: 112 LVNRFTMDSQHLISPPYV----------------IKPLKGGSSLGIIVIKKDQSI----- 150 + + Q L + P + +KP + G S G+ ++ + + Sbjct: 691 TIKKEVYKKQDLQNMPALEVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYVK 750 Query: 151 --------------------------PLDLL--------------QSSSWNHGDQLLIEQ 170 P +LL S+ + ++L+ + Sbjct: 751 ALEDCLLRIPPNSLSKAHGVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWKG 810 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DI 223 + +E+T GV+G SL + D S E K+ ++ P + ++ Sbjct: 811 HSRWLEITVGVIGTRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNEV 870 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA----- 278 ++ L + G SR D + S +V +E+N PGMTP ++ A Sbjct: 871 LDRCKQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQP 930 Query: 279 -AYAGYSFRELL 289 Y FR LL Sbjct: 931 PVYPHRFFRTLL 942 >gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii] gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii] Length = 857 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 36/281 (12%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE IP+ +G A+ + DK + + +S G PS Sbjct: 109 DIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRHGFVTIPSF 168 Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 L++ +D L+ S V+KP K GSS+G+ V + D Sbjct: 169 LIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKE 228 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDAS--------LDVTEIAVPKSD-------FYSYEL 204 D++++E ++ G E T ++ S L TE+ + D ++Y Sbjct: 229 GIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHGDGQSIGEKIFNYRR 288 Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK------- 256 KY + ++ P + P+ + ++ A + R +R D P S Sbjct: 289 KYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF 348 Query: 257 -VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + ++N+ GM S + AA G S R++L ++ A Sbjct: 349 LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRA 389 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 130/322 (40%), Gaps = 73/322 (22%) Query: 24 SALEDAGFKV-----SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLE 76 S L +G KV S + S+ + H K D + F +HG+ GE+G++Q +LE Sbjct: 511 SELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDDDAIVFIAVHGDIGENGILQEMLEAKR 570 Query: 77 IPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPSILVNRFTM------DSQHLIS-- 125 IP+T SG+ AS + MDK + + SS GV ++ + +SQ +S Sbjct: 571 IPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAKRVVYKTAELLHDCGDNSQLWLSLQ 630 Query: 126 -----PPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQ---------SSSWNHG------ 163 +KP G S G+ + +D ++ L L+ S HG Sbjct: 631 DKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIELPA 690 Query: 164 ---DQLLIEQYVDG-------------------IELTCGVMGDA----SLDVTEIAVPKS 197 D L+ E ++ +E+T GV+G +L + Sbjct: 691 TIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALHPSITLKESG 750 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFLAHQAIGCRGISRSDFLFDP 252 D S E K+ ++ P PL +E +R+ +A+ + G +R D + Sbjct: 751 DILSLEEKFQGGTGVNLTPPP-PLICSEEAVRSCRERIELVAN-TLQLEGFARIDAFMNV 808 Query: 253 LSRKVFWLEINVQPGMTPVSIF 274 + +V +E+N PGMTP ++ Sbjct: 809 DTGEVIVIEVNTVPGMTPSTVL 830 >gi|291276693|ref|YP_003516465.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198] gi|290963887|emb|CBG39723.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198] Length = 344 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 11/234 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ D+ N++HG GEDG + +L+ IPY + AS LS +K+ +K G+P Sbjct: 86 LEFDILLNLVHGADGEDGTLAGLLDFYHIPYIGPRVEASVLSFNKLYTKIFAKERGIPTL 145 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 P + + + + + + P +IKP + GSS+GI + K QS+ L Q+ ++ +L+ Sbjct: 146 PFVHLTQ-HQEQKIPLDFPLIIKPARLGSSIGISIAKDPQSLNFALDQAFEYD--SSVLV 202 Query: 169 EQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI 223 E + GI+ C + GD + E K +F +E KY + + + A + Sbjct: 203 EPFFSGIKEYNLAGCKIQGDFVFSLIE-EPGKKEFLDFEDKYLDFSRDSKIENANLSAQN 261 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++Q+ ++ + R DF K++ EIN PG +F + Sbjct: 262 VTKMQKHFEALYENCFEGALIRCDFFIH--EDKIYINEINPIPGSMANYLFEDF 313 >gi|1814254|gb|AAB41857.1| D-Alanine:D-Alanine ligase [Streptococcus sanguinis SK1] Length = 197 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 16/190 (8%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLIS 125 LE+L++PY IL+S+L+MDK+ +K+V+ S G+ P + LV+ ++ + ++ Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLT 61 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQ-YVDGIELTCGVMG 183 P KP GSS+GI + Q+ L +W + ++L+EQ E+ G++G Sbjct: 62 YPVFTKPSNMGSSVGISKSETKQNCVL----LWTWLSIRRRVLVEQGDRTAREIEVGLLG 117 Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + T E+ V FY YE KY T +PAKIP ++ +++ A A +A+G Sbjct: 118 NVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGG 176 Query: 241 RGISRSDFLF 250 G+SR DF + Sbjct: 177 LGLSRCDFFY 186 >gi|319957669|ref|YP_004168932.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511] gi|319420073|gb|ADV47183.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511] Length = 349 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 15 SLSSG---KACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLV 68 + SSG KA +LE GF ++ G +L KP D N++HG GEDG + Sbjct: 56 TFSSGEYKKAKKLSLERGGFSMA--------GGLLGGRKPLEFDCLLNLIHGRDGEDGKI 107 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 ++E IP+ + AS +S K+ +K + + G+ V L+ + + P Sbjct: 108 AGMMEFFRIPFIGPRLEASVMSYSKLNTKLLAQALGISVLEYELLRKEGPRKLSRLEYPV 167 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASL 187 ++KP+ GSS+G+ +++ ++ LD ++ D +++E +V+GI E ++ Sbjct: 168 IVKPVHLGSSIGVSIVR--EASQLDYALDVAFEFDDLVIVEPFVEGIREYNLAGCKTSAW 225 Query: 188 DVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +++ I P K +F ++ KY + T V A I + + ++ + + + R Sbjct: 226 ELSLIEEPQKEEFLDFDKKYMDFSRDTRVQEAVIDAPLRERLETAFKNIYDPLFLGSLIR 285 Query: 246 SDFLFDPLSRKVFWLEINVQPG 267 DF + KV+ EIN PG Sbjct: 286 CDFFV--VEEKVYLNEINPIPG 305 >gi|118474718|ref|YP_891983.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. fetus 82-40] gi|118413944|gb|ABK82364.1| D-alanine--D-alanine ligase [Campylobacter fetus subsp. fetus 82-40] Length = 345 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 51/320 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 ++ GG+S E E+S+ S A AL+ ++S I VD+ Sbjct: 3 FGIVFGGVSFEHEISIVSAIAVKKALK---CELSFIFVDKFGDFYLINSDDMRANFFSSH 59 Query: 41 ----------SVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 G AH L D N++HG GEDG + + E + + Sbjct: 60 KYKNSKKLHLKKGGFAAHGIFGMNDLNVDCYINLIHGRDGEDGKIAGMFEFYNVTFIGPR 119 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 + AS +S +K +K + C V P ++ R + L P+++KP + GSS+G+ V Sbjct: 120 LEASVMSFNKELTKLLAHKCAVKSLPYEMIKRGDIVKTEL---PFILKPARLGSSIGVSV 176 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELT-CGVMGDASLDVTEIAVP-KSDFY 200 ++ + LD ++ +L+E + +GI E G + + I P K+DF Sbjct: 177 VRDISN--LDYALDVAFEFDKDILVEPFKEGIREFNLAGFKAENDFIYSFIEEPKKNDFL 234 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFW 259 +E KY S +S+ A I + E++ + G + R DF L +V+ Sbjct: 235 DFEQKYMSFSSSCAKEADIDDSLKIEIKDAFAKIYNGGNFDGALIRCDFF--VLDNEVYL 292 Query: 260 LEINVQPGMTPVSIFPEMAA 279 EIN PG +F + + Sbjct: 293 NEINPNPGSMANYLFTDFTS 312 >gi|46446032|ref|YP_007397.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 798 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 21/266 (7%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106 DL F V+HG FGEDG +Q ILE +++P+ +G A A K + Q++ P Sbjct: 87 DLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACAEMFCKYHASQILHQNRFPAFMKL 146 Query: 107 -VCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 VCP L + QH + ++KP GGSS+G+ ++ + + Sbjct: 147 EVCPETNDLAPIKSFFEQHQLKRA-IVKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIA 205 Query: 164 DQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSD--FYSYELKYSSLN-STHVL 215 + LIE + +G E T V+ + +L TEI + + + Y KY N +T+ Sbjct: 206 KRALIEPFCEGTEFTVVVLQNQQSKPVALIPTEIEMSYQNHQIFDYRKKYLPTNQTTYHT 265 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+ I + +++ A R +R D +L + +++ ++N GM S Sbjct: 266 PARFDETIIQGIRQKAEAIFTLFHMRDFARLDGWLLN--DGTIYFTDLNPISGMEQNSFL 323 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 A+ G + R++ ++ A CLR Sbjct: 324 FRQASLLGLTHRDVFRLIITSA-CLR 348 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/283 (20%), Positives = 114/283 (40%), Gaps = 61/283 (21%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 F +HG GE+G++Q LE ++ Y S S++ MDK + QV+ P S+ Sbjct: 480 FVFIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSICMDKFLTGQVIEQLKHPNIFSLP 539 Query: 112 -----LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIP---- 151 N F +++ + S +IKP + G S GI++++ + Sbjct: 540 KECVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKPRQDGCSAGIVLLESGADLEKYFA 599 Query: 152 -----LDLLQSSSWNHGD-----------QLLIEQYVDG------------------IEL 177 + L+ S++ + L+E Y++ +EL Sbjct: 600 FIQNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYIETDRIILDQGELIHEIKEGWVEL 659 Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GV+ + + I + + S E K+ ++ P + ++V ++ FL Sbjct: 660 TVGVLEHNQIYRSLNPSITLAEGAVLSLEEKFQGGTGVNLTPPPEKILASEDVSQIKFLI 719 Query: 235 HQ---AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 + A+ + +R D + ++K+ +E N PG+TP ++F Sbjct: 720 EKTADALQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVF 762 >gi|154173627|ref|YP_001408215.1| D-alanyl-alanine synthetase A [Campylobacter curvus 525.92] gi|112802460|gb|EAT99804.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter curvus 525.92] Length = 347 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 13/239 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + L+ D+ N++HG GEDG ++ + I Y + AS +S +K +K + GV Sbjct: 82 VKRLEVDVYINLIHGMDGEDGKFASLFDFYGISYIGPRLEASVMSYNKELTKFLAQKVGV 141 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 ++ T + + P ++KP + GSS+G+ V+ KD+S + + ++ + Sbjct: 142 KTLDYEMI---TYEELPKFALPIILKPARLGSSIGVSVV-KDES-EFEYARDVAFEFDKE 196 Query: 166 LLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPL 221 +L+E +++G++ G M D + + + P K +F YE KY S N + A+I Sbjct: 197 VLVEPFIEGVKEYNLAGCMIDGKMRFSIVEEPKKKEFLDYEQKYMSFSNESKAQEARIDE 256 Query: 222 DIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ ++ F+ G G I R DF + +V+ EIN PG +F + A Sbjct: 257 ELRDRLKE-NFVKIYGFGFEGAIIRCDFF--VIEGEVYLNEINPNPGSLANYLFEDFEA 312 >gi|163783735|ref|ZP_02178721.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1] gi|159880981|gb|EDP74499.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1] Length = 328 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%) Query: 53 LAFNVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + FN+ +G GE V A+LE+L I YT SG A+++DK+ +K V G+P Sbjct: 71 IVFNLSYGTQGESRYSHVPAMLEMLGIMYTGSGPFGHAIALDKVSTKLVFKEYGIPTPEF 130 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++++ + + L S P V+KP SLG+ +++ + + D L G + L+E+ Sbjct: 131 VVISPYQKIPEGL-SFPLVVKPRMEAQSLGVNLVRNYRELE-DTLTHVWEEFGQEALVEE 188 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++ G E ++G+ +L +T I + P++ YS E K + PA I ++ Sbjct: 189 FIRGPEYEVSLIGNGKYIKALPITGIYLGDDPEA-IYSREAKL-KYHPEQFCPAAIKGEL 246 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + L+ A A+ R +R D K ++ E+N + P F A AG Sbjct: 247 ARRLVELSIKAFNALHLRDYARFDLRLGE-DGKPYFFEVNSMASLNPSGSFFCAAKAAGL 305 Query: 284 SFRELLLWMVEDA 296 S+ +L+ ++ + Sbjct: 306 SYDQLIFKILHSS 318 >gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens] Length = 966 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 76/372 (20%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASAL------EDA 29 +A++ GG S ER +SL+S ++ SAL ED Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172 Query: 30 GFKVSQIDVD-RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 FK++ +S L HL+ D+ F LHG FGEDG +QA+LE +PY +G A Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----------SPPYVIKPLKG 135 + ++ DK + ++ G P LV +D L S V+KP + Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292 Query: 136 GSSLGIIVIKK-DQSIPLDLLQSSSWNHG--DQLLIEQYVDG-IELTCGVM----GDASL 187 GSS+G+ V + D ++ + +N G D+++IE + +G +E T V+ G+ + Sbjct: 293 GSSVGVSVAEGLDTAVQ---HAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETR 349 Query: 188 DV----TEIAVPKSDF----------YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAF 232 V TE+ + D+ ++Y KY + ++ P + + +++ A Sbjct: 350 PVALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAA 409 Query: 233 LAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + R I+R D P S + + +IN+ GM SI A+ G + ++ Sbjct: 410 DLFRILNLRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQASLVGLAHVDI 469 Query: 289 LLWMVEDASCLR 300 L ++ A C R Sbjct: 470 LRTLLRRA-CTR 480 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 113/302 (37%), Gaps = 85/302 (28%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV---SSCGVPVCP 109 + F +HG+ GE+G +Q +L + +T S AS L MDK + + SS G+ Sbjct: 651 VVFIAVHGSIGENGTLQELLAASGVRHTGSAAEASRLCMDKAATGAAISHLSSQGIYTAA 710 Query: 110 SILV---------NRFTMD-SQHLISPPYVIKPLKGGSSLGI---------------IVI 144 L ++ M+ + L + +KP+ G S G+ + Sbjct: 711 KALRKVHEILQKEDQVWMELKEELKANDLCVKPVGDGCSTGVAKLSCAEDLAAYAKAVQT 770 Query: 145 KKDQSIPLDLLQSSSWNHG---------DQLLIEQYV-----------------DG---- 174 + Q P L++ HG ++LL E ++ DG Sbjct: 771 GQSQIPPGTFLKA----HGIIEMPGVPPERLLFEPFIETDHIAVLSSTTGEDSKDGELIW 826 Query: 175 ------IELTCGVMG--------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 IE+T GV+G + S+ V E + E K+ ++ P Sbjct: 827 EGKSRWIEVTVGVLGVQGVMHALNPSITVKETG----SILTLEEKFQGGTGINLTPPPPS 882 Query: 221 LDIYKEV----QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 L + + +R+ +A + +G G +R D + +V +E N PGMTP ++ Sbjct: 883 LATEEAIAGCKKRIEIVA-RTLGLDGFARIDAFMHADTGEVIIIEANTVPGMTPSTVLIH 941 Query: 277 MA 278 A Sbjct: 942 QA 943 >gi|254464679|ref|ZP_05078090.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] gi|206685587|gb|EDZ46069.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] Length = 336 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 134/307 (43%), Gaps = 21/307 (6%) Query: 7 GISSEREVSLSSGKACAS---ALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNF 62 G+S E S + A+ AL G + +I R + LA + DL FN+ G Sbjct: 17 GLSDEAMAEFDSPETIAAIENALHARGHQTQRIGHVRILAQRLAAGDRWDLVFNIAEGLQ 76 Query: 63 GE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 G + V A+LE IPY+ S L AL +DK +K+VV G+P P ++ DS Sbjct: 77 GRAREAQVPALLEAFGIPYSFSDPLTQALGLDKAMAKRVVRDAGIPTAPFAVLETPADDS 136 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIELT 178 + P +KPL G+ G K + S +L E ++ G E T Sbjct: 137 GLDLPFPIFLKPLAEGTGKGCEHASKANGADQAAAAARSLRQRFRQPVLAESFLPGREFT 196 Query: 179 CGVMGDASLDVTEIAV--------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G++G+ + D IAV +++ YS++ K T V+ + Sbjct: 197 VGILGNGA-DARVIAVMEILLLDTAEAEIYSFQNKQQW--ETRVIYRLADDAEARAAGAA 253 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289 A A+ A+GCR +R D D F LE+N PG+ P S P ++A AG ++ L+ Sbjct: 254 ALAAYHALGCRDAARIDLRSDAAGIPNF-LEVNTLPGLHPSHSDLPILSAKAGLDYQGLI 312 Query: 290 LWMVEDA 296 +++ A Sbjct: 313 GGILDAA 319 >gi|51945071|gb|AAU14218.1| VanB [Enterococcus faecium] Length = 223 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V Sbjct: 57 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G+ + + L+ ++ + ++LIEQ Sbjct: 117 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 174 Query: 172 VDGIELTCGVMGD 184 + G E+ C VMG+ Sbjct: 175 ISGCEVGCAVMGN 187 >gi|317177433|dbj|BAJ55222.1| D-alanyl-alanine synthetase A [Helicobacter pylori F16] Length = 347 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A AL+D +QI Sbjct: 3 FCVLFGGASFEYEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHNGLLKSSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNCANALNLIGFNFPFIIKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSSALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEM 277 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDF 316 >gi|268323675|emb|CBH37263.1| conserved hypothetical protein, containing D-alanine--D-alanine ligase C-terminus domain [uncultured archaeon] Length = 720 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 25/310 (8%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVL 58 G+ ++ + ++ K A +LE G V + + + L P +AFN+ Sbjct: 19 GMQNKEMYNPNTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERLGMAFNMA 78 Query: 59 HGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 +G GE A+LE+L IPY SG +L++DK+ +K ++ G+P P+ V Sbjct: 79 YGIQGESRYTHLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQGIP-TPNFWVYST 137 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYV 172 + + P ++KP S GI ++ ++ ++ L +++ Q L+EQ++ Sbjct: 138 GDEDMSDVQYPVIVKPKMEAVSYGIKIVDNEEDLRAAVKLVVIEFKQ-----QALVEQFI 192 Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E G++G+ + V EI + D + PAKI + + Sbjct: 193 RGREFCVGLLGNGDPEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLADVMV 252 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 RL+ A A+G R +R D D ++ ++ LEIN + + A AGY + L Sbjct: 253 RLSKDAFHALGLRDFARVDIRMDE-AKNIYLLEINSMASLGLTGSYVHAANVAGYDYARL 311 Query: 289 LLWMVEDASC 298 + ++E A+ Sbjct: 312 VNKILEVAAV 321 >gi|188527419|ref|YP_001910106.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470] gi|229485957|sp|B2UT94|DDL_HELPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188143659|gb|ACD48076.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470] Length = 347 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + GI AS LS +K +K GV +L Sbjct: 90 LVINLVHGGDGEDGKLASLLEFYRIAFIGPGIEASVLSYNKYLTKLYAKDLGVKALDHVL 149 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ +LI + P++IKP GSSLG+ V+K+++ + L ++ + ++LIE Sbjct: 150 LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEILIE 207 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + A + + + Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + + R DF + +V+ EIN PG +F + Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318 >gi|300113563|ref|YP_003760138.1| hypothetical protein Nwat_0871 [Nitrosococcus watsonii C-113] gi|299539500|gb|ADJ27817.1| conserved hypothetical protein [Nitrosococcus watsonii C-113] Length = 364 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 27/252 (10%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 + A+LE+L IPY+ +G L DK + V + GVPV V+ ++ L P Sbjct: 93 IPALLEMLGIPYSGAGPTCLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKDFP 152 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-------GDQLLIEQYVDGIELTCG 180 +IKP +G S+GI + S+ D Q+ ++ + LLI++++ G E + G Sbjct: 153 ALIKPNRGDGSVGIT----ENSLVYDEPQAHAYINKLAMEFPSCDLLIQEFLPGDEYSVG 208 Query: 181 VMGDASLDVTEIAVPKSDF-------------YSYELKYSSLNSTHVLPAKIPLD--IYK 225 ++G+ S + + K D+ Y+ ++ +S T + K +D + + Sbjct: 209 LLGNPSSGFKILPILKVDYSRLAAHRLPPILAYASKVDPASPYWTDIKYGKAAIDEGLRQ 268 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 + L + +GCR +R DF D +V LE+N P M +AGY + Sbjct: 269 RLVGYCRLLFERLGCRDYARFDFRAD-AQGEVKLLEVNPNPAWCWDGKLNLMVGFAGYRY 327 Query: 286 RELLLWMVEDAS 297 ELL W+++ A Sbjct: 328 GELLEWILQAAQ 339 >gi|86153489|ref|ZP_01071693.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843215|gb|EAQ60426.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 346 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++++ + + + R DF L +V+ EIN PG +F + + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDFST 314 >gi|116748158|ref|YP_844845.1| D-alanine--D-alanine ligase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697222|gb|ABK16410.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 326 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 16/282 (5%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77 A SAL D F+ +I R++ LA + DL FN+ G FG + + A+L+ I Sbjct: 34 AIESALRDLKFETDRIGHVRNLVRRLAVGERWDLVFNIAEGLAGFGREAAIPALLDAYGI 93 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S L +LS+ K +K V+ + G+P +++ + I P KP+ G+ Sbjct: 94 PYTFSDPLVLSLSLHKGMAKNVLRNMGIPTADFVVIQDVSETEAIGIPFPVFAKPVAEGT 153 Query: 138 SLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTE 191 GI + Q + + + +LIE+++ G E T G++G + + V E Sbjct: 154 GKGIDAASRIGTQEELVAKCRQLLEVYRQPVLIEKFLPGREFTVGLVGTGAKTEVVGVME 213 Query: 192 IAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + + D YSY K A+ I + R++ A + +GCR R D Sbjct: 214 VILKDGAERDAYSYSNKEHYERRVEYRLAE--GSIARLAARISVEAWRKLGCRDGGRIDL 271 Query: 249 LFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289 D + F +E+N G+ PV S P ++ AG S+ EL+ Sbjct: 272 RCDERNVPSF-VELNPLAGLHPVHSDLPILSRLAGMSYVELI 312 >gi|325111081|ref|YP_004272149.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] gi|324971349|gb|ADY62127.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] Length = 329 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 24/264 (9%) Query: 52 DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DL FN+ G G + V +IL++ EIPYT S L ++ + K +KQVV+ G+ Sbjct: 66 DLVFNISEGLRGLSRESQVPSILDVYEIPYTFSDPLTLSVCLHKELTKQVVARAGILTPA 125 Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGII------VIKKDQSIPLDLLQSSSWNH 162 S+LV++ + +D HL P + KP+ G+ G+ + S+ L LL Sbjct: 126 SLLVSQLSDLDRLHLQFPLFA-KPVAEGTGKGVTPASCVNSFNELHSVCLQLLTEFE--- 181 Query: 163 GDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 +L+E ++ G E T G++G +L++ + YSY K + + Sbjct: 182 -QPVLVESFLPGREFTVGILGTGEAARVVGTLEIVLREAAEVGVYSYVNKERCEDLVDYV 240 Query: 216 PAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSI 273 P D ++ + LA A +A+GCR R D D R F +E N G+ P S Sbjct: 241 PVNGHDDAEVRQAEELALTAWRALGCRDGGRIDVRSDSHGRPNF-IEANPLAGLHPHHSD 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDAS 297 P +A G ++ +L+ +V A+ Sbjct: 300 LPMIATAVGMTYVDLIDQIVTSAA 323 >gi|290473195|ref|YP_003466060.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004] gi|289172493|emb|CBJ79260.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004] Length = 365 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 57/326 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-----KVSQIDVDRSV--GLVLAHLKP-- 51 ++++ GGIS E S+SS + + F + D D SV ++ P Sbjct: 14 LSIIFGGISPEHPASVSSFDNLIKSFRELNFDRNLNSIYFFDKDGSVLYNAYTPYISPYD 73 Query: 52 ---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + N+LHGN GEDG +Q + + +I T +L S+LS Sbjct: 74 FTHSGDKIDLYTAIKRMSKQSEFHINLLHGNLGEDGHIQGVAKYFKIKGTFGSVLPSSLS 133 Query: 91 MDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 M K ++S + PS+ L F++ S + VIKP G+S Sbjct: 134 MSKYHMSHYINS----LLPSLRSPKTLLLTEGNLEKAFSLISDNFPEEKIVIKPNSLGAS 189 Query: 139 L---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDA-SLDVTE 191 L + ++ ++ LD L+ + + + L++ ++ G E + G + G A +L+V E Sbjct: 190 LFTNKYVNLENEKKSILDNLK-NIFEYDRFALVQAFIKGKEYSVGCIRIEGKAIALNVVE 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I + K+ F+ ++ K+ + +L + +I + ++ L+ ++ G + R DF+ Sbjct: 249 I-ITKNGFFGHDEKHRINKAEEILLIQ-DSEITRTLKDLSIKIFESTGYEFMCRFDFIVT 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEM 277 S ++++LE N PGM SIFP+M Sbjct: 307 E-SEEIYFLESNPIPGMMKNSIFPKM 331 >gi|238925027|ref|YP_002938543.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656] gi|238876702|gb|ACR76409.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656] Length = 332 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 29/223 (13%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLI--SP 126 A+LE+L +PY+ SG+ SAL +K K+ + + G+ + S +VN F ++ L Sbjct: 90 ALLEILNVPYSGSGVFPSALMNNKHFCKKALLNLGIRMPKSCIVNHDFPLNCAQLRKWKY 149 Query: 127 PYVIKPLKGGSSLGII----------VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP GSSLGI VIKK + +D +++IE+YV+GI+ Sbjct: 150 PLFVKPNCEGSSLGISNDCVCHTIDEVIKKCNKLLMDF---------QEIIIEEYVEGID 200 Query: 177 LTCGVMG-DASLDVTEIAVPK-SDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQR 229 +T ++G +AS + I K D SY + K + L + + IP ++ + ++R Sbjct: 201 VTNYLIGNNASYYINSIVTAKLFDESSYAIYGINEKQNKLRTLFIDDEYIPTNLVEAIKR 260 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + L Q +G I R D+ + ++ ++EIN P + S Sbjct: 261 QSILIAQTLGVHDICRIDYRVNVSKQEFDFIEINSAPRFSSTS 303 >gi|317034958|ref|XP_001400807.2| D-alanine--D-alanine ligase [Aspergillus niger CBS 513.88] Length = 351 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 47/311 (15%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFG--EDGLVQAILELLEI 77 A+AL++ G +V + S+ LAH + DLAFN G G +G V A+LE +I Sbjct: 41 AAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLEAYQI 100 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------------------RFTM 118 P+T S L +DK R+K V+ VP P +++ R + Sbjct: 101 PFTFSDAATMTLCLDKGRTKMVLEHFNVPTAPFAVIHFDHTAEKTQVSLDEILSMIRMSR 160 Query: 119 DSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL--LIEQYVD 173 S+ L+S P +KPL GSS GI K +SI D++ S + L L+E+Y+ Sbjct: 161 HSETLLSQYPLFVKPLAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLP 220 Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--V 227 G E T G++G + V EI +D ++ E KI D + Sbjct: 221 GREFTVGILGTGEDAWVVGVDEIYGASADDWAGEAD----------EIKIGWDDQEADLA 270 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTP-VSIFPEMAAYAGYSF 285 + A A + CR R D D V +EIN G+ P S P +A + S+ Sbjct: 271 CQTALRAWTVLRCRDGGRIDIRMDHSGSPVAHVMEINPLAGLLPHWSQLPMIAEHNNVSY 330 Query: 286 RELLLWMVEDA 296 EL+ ++++ A Sbjct: 331 NELIEYILKSA 341 >gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa] gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa] Length = 931 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/383 (24%), Positives = 153/383 (39%), Gaps = 87/383 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ +E +VS ID D Sbjct: 84 VGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADF 143 Query: 40 -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ HL D+ F V+HG FGEDG +Q +LE +P+ +G Sbjct: 144 DFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRE 203 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + +S G PS LV FT + S V+KP + Sbjct: 204 CRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARA 263 Query: 136 GSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS----- 186 GSS+G+ V + DL+ S D++L+E +++ G E T V+ S Sbjct: 264 GSSIGVTVAYGVSDSLKKANDLI---SEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCH 320 Query: 187 ---LDVTEIAV---------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L TE+ + + ++Y KY + + P + PL + + ++ A + Sbjct: 321 PVVLLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASI 380 Query: 234 AHQAIGCRGISRSDFLFDPLSR----------------KVFWLEINVQPGMTPVSIFPEM 277 + +G R +R D F P S + + +IN+ GM S + Sbjct: 381 LFRQLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQ 440 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A+ G+S +L ++ A CLR Sbjct: 441 ASKVGFSHSNILRSVIHRA-CLR 462 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 82/312 (26%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111 F +HG GEDG +Q++LE +P+T G AS MDK+ + +S G+ + Sbjct: 617 FIAVHGGIGEDGTLQSLLESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGI-----L 671 Query: 112 LVNRFTMDSQHLISPPYV----------------IKPLKGGSSLGI--IVIKKDQSIPLD 153 +N+ + L++ P + +KP + G S G+ + +D ++ + Sbjct: 672 TINKDVCRKEDLLNMPALEIWDELISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYIK 731 Query: 154 LLQ---------SSSWNHG---------DQLLIEQYVDG--------------------- 174 L+ S S +HG ++L+ E +++ Sbjct: 732 ALKDCLLRIPPDSFSKSHGMIEMPSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWKG 791 Query: 175 ----IELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +E+T GV+G SL + D S E K+ ++ P + + Sbjct: 792 NSRWVEITVGVIGTLGSMRSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNEA 851 Query: 227 VQRLAF---LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA----- 278 ++R L + G SR D + S +V +E+N PGMTP ++ A Sbjct: 852 LERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQP 911 Query: 279 -AYAGYSFRELL 289 Y FR LL Sbjct: 912 PMYPHKFFRTLL 923 >gi|205356768|ref|ZP_03223527.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345335|gb|EDZ31979.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 346 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +V R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++++ + + + R DF L +++ EIN PG +F + + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDFST 314 >gi|148269503|ref|YP_001243963.1| methyltransferase type 11 [Thermotoga petrophila RKU-1] gi|281411779|ref|YP_003345858.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10] gi|147735047|gb|ABQ46387.1| Methyltransferase type 11 [Thermotoga petrophila RKU-1] gi|281372882|gb|ADA66444.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10] Length = 637 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 28/299 (9%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGED----GLV 68 ++ KA +L+ G+ S +D ++ L LK D FN+ F D V Sbjct: 329 TIDQMKAALRSLK--GYNFSYLDNHDTLITDLMKLKGKIDYVFNLCDEGFNNDPRKEAHV 386 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 A+LE+L IPYT SG L DK + + G+PV ++ + + P Sbjct: 387 PALLEMLGIPYTGSGPQTLVLCYDKSLIRGIAREMGIPVPRAVFIKPEDTTFELPFPFPA 446 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMG 183 ++KP G SS G I K P +L+ + S + + +L+E+++ G +L+ G++G Sbjct: 447 IVKPNFGDSSFG-ITQKSVVYTPEELINAVSEIRNKFGYDKPVLVEEFLTGKDLSVGIIG 505 Query: 184 DASLDVTEIAVPKSDFYS----------YELKY---SSLNSTHVLPAKIPLDIYKEVQRL 230 + + + + D+ + YE K+ S + +PA +P + K + Sbjct: 506 NPPDSYMVLPIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSIPADLPEETEKFIIDC 565 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + CR R D+ D LE+N PG +MA AG S+ E+L Sbjct: 566 CLKLFERLECRDYCRFDWRLDAEGNPKL-LEVNPNPGWCWDGHLAKMAKIAGMSYAEML 623 >gi|57237643|ref|YP_178891.1| D-alanyl-alanine synthetase A [Campylobacter jejuni RM1221] gi|121612276|ref|YP_001000487.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81-176] gi|167005423|ref|ZP_02271181.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81-176] gi|81353739|sp|Q5HUZ4|DDL_CAMJR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083036|sp|A1VZE6|DDL_CAMJJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|57166447|gb|AAW35226.1| D-alanine--D-alanine ligase [Campylobacter jejuni RM1221] gi|87249415|gb|EAQ72375.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|315058252|gb|ADT72581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni S3] Length = 346 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 +V R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++++ + + + R DF L +++ EIN PG +F + + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDFST 314 >gi|317009252|gb|ADU79832.1| D-alanyl-alanine synthetase A [Helicobacter pylori India7] Length = 347 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+LAH ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +L+ + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDCVLLNEKNRANALNLMNFNFPFIVKPNSAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|332798138|ref|YP_004459637.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] gi|332695873|gb|AEE90330.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] Length = 336 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 30/289 (10%) Query: 31 FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASA 88 F+ S + D + L + L FN+ +G GE Q AILE IPYT S IL Sbjct: 42 FECSLVKADSDIISKLQNENVSLVFNLCNGIRGETRQAQIPAILEFSGIPYTGSSILGHT 101 Query: 89 LSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIK 145 L+++K + +V GV P SI M ++ I P ++KP GS GI Sbjct: 102 LAINKNYACKVFKGSGVTTPEFISIYDKDDLMQLRNKEIKFPVLVKPCDEGSGRGI---- 157 Query: 146 KDQSIPLDL------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEI 192 S+ D +Q + +++ +Y+ G E T G++G+ + L+++ Sbjct: 158 HQDSLVYDFRSLKRKVQQELRLYNPPIMVTEYIKGREFTVGILGNGNNLKVLPILEISFE 217 Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDF 248 A+P + FYS+E+K + + T + PLD + +++ A A+ A+ R +R D Sbjct: 218 ALPDDLAKFYSFEVKANYADKT-IFRCPAPLDNKLKTKIENTAKKAYNALSLRDYARVDV 276 Query: 249 LFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 + LE+N PG+ S +MA+ + L+L +VE+A Sbjct: 277 RVK--DDTPYVLEVNSLPGLQKGYSDITKMASACNLGYEGLILKIVENA 323 >gi|296272621|ref|YP_003655252.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299] gi|296096795|gb|ADG92745.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299] Length = 344 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 10/236 (4%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 +++ D+ N++HG GEDG V ++ E +I Y + A ++S +K +K SS G+ Sbjct: 84 NVEFDIVLNLIHGGDGEDGTVASLFEFFDIKYIGPRVGACSVSFNKFLTKGYASSLGIKT 143 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 P +F D + P ++KP+ GSS+G+ ++K + + L ++ + +L Sbjct: 144 IPYKYFTKF--DEISVDEFPVIVKPVTLGSSIGVSIVKTKEELSYAL--DVAFEFDNAVL 199 Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 IE +V I+ G + + I P K+DF ++ KY T + D Sbjct: 200 IETFVPNIKEYNLAGYKIGNEIKYSIIEEPQKADFLDFDKKYLDFARTERVSVANISDEL 259 Query: 225 KEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 KE + AF + + R DF + +V+ EIN PG +F + A Sbjct: 260 KEKLKKAFATIYNTTFNDAMIRCDFFV--IDDEVYLNEINPIPGSMANYLFEDFDA 313 >gi|261839442|gb|ACX99207.1| D-alanyl-alanine synthetase A [Helicobacter pylori 52] Length = 347 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|222823640|ref|YP_002575214.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100] gi|254767723|sp|B9KFX8|DDL_CAMLR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222538862|gb|ACM63963.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100] Length = 346 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 19/271 (7%) Query: 15 SLSSG---KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 + SSG K A L+ GF + + L L D+A N++HG GEDG + A+ Sbjct: 55 TFSSGAYKKEKALVLKQGGFFIKTM-------LGEKKLDMDVAVNIVHGKDGEDGKIAAL 107 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 L+ I Y I AS LS +K +K S GV ++N + L S P ++K Sbjct: 108 LDFYGIKYIGPRIEASVLSFNKALTKLYAQSVGVKTLDYKVLNLHKEQNVSL-SFPCILK 166 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P + GSS+GI ++ KD+S L + ++ + +++EQ+V I+ G M ++ Sbjct: 167 PARLGSSIGISIV-KDES-ELKYAKDVAFEFDEDVVVEQFVSNIKEYNLAGCMIGEKMEF 224 Query: 190 TEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + I P K++ +E KY + S+ V A I ++ ++++ + + + R D Sbjct: 225 SIIEEPRKNEILDFEQKYLGFSESSKVSEANISEELKQKLRDNFTRIYNPLFKGALIRCD 284 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 F + +V+ EIN PG +F + Sbjct: 285 FF--VIDDEVYLNEINPNPGSLANYLFEDFT 313 >gi|308063477|gb|ADO05364.1| D-alanyl-alanine synthetase A [Helicobacter pylori Sat464] Length = 347 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLK- 50 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 51 ---PDLAF----------------------NVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 P L F N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLIFTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|307750582|gb|ADN92458.1| truncated D-alanine D-alanine ligase [Enterococcus faecium] Length = 230 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 11/133 (8%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + F VLHG GEDG +Q LE L +PY +G+L SA +MDK+ +K ++ + GVP P Sbjct: 92 IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151 Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +L N++ + + + P +KP GSS+GI K + L ++++ + Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209 Query: 164 DQLLIEQYVDGIE 176 + ++EQ ++ E Sbjct: 210 SRAIVEQGIEARE 222 >gi|317180500|dbj|BAJ58286.1| D-alanyl-alanine synthetase A [Helicobacter pylori F32] Length = 347 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKETLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS K +K G+ +LVN + ++ LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYSKYLTKLYAKDLGIKTLDCVLVNEKNRANALDLIGFNLPFIIKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|186474632|ref|YP_001863603.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] gi|184198591|gb|ACC76553.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] Length = 357 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 33/249 (13%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---------- 102 N+L+GNFGEDG +Q + +P + +LA++L+M K Q ++S Sbjct: 88 FVLNLLYGNFGEDGKIQGAAAIASVPGSFGPVLAASLAMSKYHMNQYIASAHPVVQIPDT 147 Query: 103 -----CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLD 153 C +P + + +RF H + V+KP G+SL D +SI + Sbjct: 148 LLLRECDLPEASTRIFDRF-----HGME--IVVKPNSLGASLFTNRYLVDPECIESIKTN 200 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLN 210 L + + + L+++YV G E + G + + AV + F+ +E K+ S Sbjct: 201 LAE--IFEYDANALVQRYVSGTEYSIGCLQKNETVMVLPAVRIETEGAFFGHEEKHRSGK 258 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + ++ + + K + L+ +++ R + R DF+ P +F+LE N PG+ Sbjct: 259 ANEIIIME-ESPVVKSLGDLSIEIFKSVDFRNMCRFDFIVSP-EEAIFFLEANTIPGLMR 316 Query: 271 VSIFPEMAA 279 SIFP+M A Sbjct: 317 NSIFPKMLA 325 >gi|315185431|gb|EFU19202.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578] Length = 648 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 27/264 (10%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K D FN+ F D V A+LE+L IPYT + A DK + V GV Sbjct: 373 KVDYVFNLCDEGFFNDPRKELHVPALLEMLGIPYTGATPQGLAFCYDKSLVRGVAKEMGV 432 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS------SS 159 PV + ++ ++ + P ++KP G SS GI +K LD L + + Sbjct: 433 PVPRAFFIDPTSIVFEVPFGFPMIVKPNLGDSSFGI--TQKSVVWSLDELSACISEIRDT 490 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY--- 206 + + +L+E+++ G +LT G++G+ + D + + + D+ + YE K+ Sbjct: 491 FGYEKPVLVEEFLTGKDLTVGIIGNPTDDYMVLPIVEEDYSALPPELPRICGYEAKWLPD 550 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +PA +P + K + + + CR +R D+ D + LE+N Sbjct: 551 SPYWKALRSIPAGLPEETEKSIVEWCVRLFERLECRDYARFDWRCD-ADGNPYLLEVNPN 609 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PG +MA AG + +L Sbjct: 610 PGWCWDGHLAKMARLAGMEYPRML 633 >gi|327399078|ref|YP_004339947.1| type 11 methyltransferase [Hippea maritima DSM 10411] gi|327181707|gb|AEA33888.1| Methyltransferase type 11 [Hippea maritima DSM 10411] Length = 661 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 123/279 (44%), Gaps = 32/279 (11%) Query: 46 LAHLKP--DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L LKP D FN+ F + + A+LE+L IPYT S A DK + V Sbjct: 354 LIKLKPKIDFVFNLCDEGFNNEPTKELYIPALLEMLNIPYTGSNPQCLAYCYDKSLIRGV 413 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIPL 152 G+PV ILV T D L P P ++KP G SS GI +V D+ I + Sbjct: 414 AKEMGIPVPKGILV---TPDKTVLELPFNFPAIVKPNFGDSSFGITKKSVVYTMDELIEV 470 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------Y 202 + H +LIE+++ G +LT G++G+ S + + + + D+ Y Sbjct: 471 LSEIKEQFGHDKPVLIEEFLTGSDLTIGIIGNISGNYKILPIIEEDYSKLPDDLPKICGY 530 Query: 203 ELKY----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E K+ N+T L A++ + + + + + + R D+ D S+ Sbjct: 531 EAKWLPGSPYWNNTSRL-AQLDEETERIIVESSLKLWERLNVNDYCRFDWRLDSESKPKL 589 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 LE+N PG +MA AG S+ E+L ++E A+ Sbjct: 590 -LEVNPNPGWCWDGHLAKMAKIAGISYGEMLNMILEAAA 627 >gi|157415069|ref|YP_001482325.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81116] gi|189083034|sp|A8FLL1|DDL_CAMJ8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157386033|gb|ABV52348.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 81116] gi|315931216|gb|EFV10188.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 346 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +V+ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312 >gi|330874974|gb|EGH09123.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 154 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + Q+L+EQ++ G E T + L + P S FY Y+ KY + ++ + +P + Sbjct: 16 TYDSQVLVEQWIQGPEFTVASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLG 74 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAA 279 +E+++LA A AIG G +R+D + D + FWL E+N PGMT S+ P A Sbjct: 75 DAQEQELKQLAARACDAIGIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAAR 132 Query: 280 YAGYSFRELLLWMVEDASCLR 300 AG F++L+L ++ D+ R Sbjct: 133 AAGLDFQQLVLAILADSVQAR 153 >gi|283957219|ref|ZP_06374681.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] gi|283791291|gb|EFC30098.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] Length = 346 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + A+ E I + + AS LS +K +K S GV ++ R Sbjct: 92 NLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-R 150 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++E++ + I Sbjct: 151 KNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVVEEFKNNI 208 Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLA 231 + G M + + I P K +F +E KY S + ++ A + ++ ++++ Sbjct: 209 KEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSF 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + + R DF L +V+ EIN PG +F + Sbjct: 269 KKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312 >gi|255943331|ref|XP_002562434.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587167|emb|CAP94831.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255] Length = 366 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 140/316 (44%), Gaps = 44/316 (13%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74 +A S L+ G +V+ + S+ LA H DLAFN+ G G + V A+L Sbjct: 42 QAVLSTLKKLGHQVTLVPGIESLVQQLAAGKHKCWDLAFNMAQGFHGPARESQVPALLGA 101 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLIS 125 ++P+T + AL +K +K V++ +P P +++ +FT + Sbjct: 102 YQVPHTFADAATMALCQNKANTKMVLNHHNIPTAPFVVIPASEPADSLIKFTTSG---LQ 158 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP+ GSS GI K ++ P +L Q S + +L+E ++ G E T G+ Sbjct: 159 YPLFVKPVTEGSSKGIDGFNKVKN-PAELEPAVHQLRSKFPAEDILVEPFLSGREFTVGI 217 Query: 182 MGDASLDVTEIAV-------PKSDFYS-----YELKYSSLNSTHVLPAKIPLD---IYKE 226 +G A D I V P +DF + +L+++S S IP D + + Sbjct: 218 LG-AGEDSRVIGVREFIWKKPSADFTNGVDGHPDLEFASRWSKSSRNKLIPRDQDLTHPQ 276 Query: 227 VQ---RLAFLAHQAIGCRGISRSDFLFDPLSRKVF--WLEINVQPGMTP-VSIFPEMAAY 280 VQ R++ A + GCR R D FD LE+N G+ P S P A Sbjct: 277 VQAACRVSLDAWKVFGCRDAGRVDIRFDSDEPDAVPNILEVNPISGLLPDHSPLPACAES 336 Query: 281 AGYSFRELLLWMVEDA 296 G S+ ELL ++E A Sbjct: 337 NGISYAELLGAIIESA 352 >gi|289524162|ref|ZP_06441016.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502818|gb|EFD23982.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 353 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 26/298 (8%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71 S S+ A A +E GFK + + + LA+ + D FN+ G G + + + Sbjct: 41 SQSTVDALAKEIESFGFKTLLCEQNEDLPSKLANQRLDFMFNIAEGIGTERGRESQIPCL 100 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------IS 125 LE L IPY+ S ++ A+S+DK + V++ VPV P + + R D +++ + Sbjct: 101 LESLGIPYSGSDPVSLAISLDKYLTNVVLNRENVPV-PFMTLFRSEDDLRNVDMLFQDNN 159 Query: 126 PPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 Y+ KP GSS G+ + + + ++L+ + +IE ++ GIE+T G++ Sbjct: 160 ETYIAKPRWEGSSKGVFRDSICRNPNELKRNVLRIFE-RYRQPAIIEAFLPGIEITAGIV 218 Query: 183 GDAS----LDVTEIA--VPKSD---FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAF 232 G+ S L + +I+ P D YS E K L + P I + +E +A Sbjct: 219 GNGSDARLLGMMKISERKPSDDGVFLYSLEHKRDWLECILYEGPEAINEKVRREAAMIAL 278 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 A A+ R I+R D D ++ ++IN PG++P S P + + +G ++ +L+ Sbjct: 279 DAFHALELRDIARIDMRMDGQG-QLRVIDINPLPGLSPYYSDLPILYSLSGGNYHDLI 335 >gi|15645358|ref|NP_207532.1| D-alanyl-alanine synthetase A [Helicobacter pylori 26695] gi|2829460|sp|P56191|DDL_HELPY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2313860|gb|AAD07784.1| D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] Length = 347 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 129/321 (40%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+ NR + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRANALDLMNFNFPFIIKPNNAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELVYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IKNEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|225439600|ref|XP_002265851.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera] Length = 952 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 92/387 (23%), Positives = 150/387 (38%), Gaps = 95/387 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + V+ GG S+ER +SL+S ++ ++ VS +D Sbjct: 79 VGVICGGPSAERGISLNSARSVIDHIQGDDLLVSCYYIDCNLNAYAISPAQVYSNTPTDF 138 Query: 40 -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 RS+ HL D+ F V+HG FGEDG +Q +LE IP+ + Sbjct: 139 DFKLESLAQGFRSLSDFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNE 198 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK S + G P+ LV F + S V+KP + Sbjct: 199 CRQAFDKYDSSLELDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRA 258 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS- 186 GSS+G+ V +KK I + + D++L+E +++ G E T V+ S Sbjct: 259 GSSIGVTVAYGVADSLKKANEIIAEGID-------DRVLVEIFLEGGSEFTAIVLDVGSG 311 Query: 187 -------LDVTEIAV---------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQR 229 L TE+ + K ++Y KY + + P + P+D+ ++ Sbjct: 312 FDCHPVVLLPTEVEIQLHDNADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIRE 371 Query: 230 LAFLAHQAIGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSI 273 A L Q +G +R D F P S V + +IN+ GM S Sbjct: 372 GASLLFQRLGLHDFARIDGWFLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSF 431 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 + A+ G+S +L +++ A CLR Sbjct: 432 LFQQASKVGFSHSNILRSIIQRA-CLR 457 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 121/315 (38%), Gaps = 88/315 (27%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111 F +HG GEDG +Q +LE +PYT G+ S + MDK+ + ++ GV + Sbjct: 638 FIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV-----L 692 Query: 112 LVNRFTMDSQHLISPP----------------YVIKPLKGGSSLGI--IVIKKDQSIPLD 153 +N+ + + L++ P +KP + G S G+ + +D ++ + Sbjct: 693 TINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYVK 752 Query: 154 LLQ---------SSSWNHG----------------------------------DQLLIEQ 170 L+ S S HG ++L+ E Sbjct: 753 ALEECFLRIPSNSLSKAHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWEG 812 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + +E+T GV+G SL + D S E K+ ++ P PL I + Sbjct: 813 HSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTPP--PLSIISK 870 Query: 227 V------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-- 278 QR+ +A+ + G SR D + S +V +E+N PGMTP ++ A Sbjct: 871 AALESCKQRIELIAN-TLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 929 Query: 279 ----AYAGYSFRELL 289 Y FR LL Sbjct: 930 EEPPMYPHRFFRTLL 944 >gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum MopnTet14] Length = 802 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-----EDAGF---------KVSQID--------- 37 + +L GG S E ++S+ S K A L E GF KVS ++ Sbjct: 449 LGILCGGRSCEHDISILSAKNIARHLSSTFYEVQGFIITREGLWKKVSLLEGTEDSEKSI 508 Query: 38 VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + + L L D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K Sbjct: 509 FDSEIAMQLERL--DVIVPILHGPYGEDGAIQGFLETIGKPYTGPSVVFAAIGMNKVLTK 566 Query: 98 QVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 + +S G+PV P + + ++ S P +K GSS+G+ + Sbjct: 567 RFMSDLGIPVVPYLPLTLTGWKQEPEKWLAQIMKAFSFPMFVKAAHLGSSIGVFEVH--D 624 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS--LDVTEIAVPKSD--FYSYE 203 ++ L ++ + + IE+ G E+ +GD + V + + F Y Sbjct: 625 ALELREAIHEAFVQDNDVFIEESRLGCKEIEVSFLGDGAGVFFVAGMHERRGSGGFIDYC 684 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFW 259 KY L+ +D+ +E+Q A + I +G R DFL D FW Sbjct: 685 EKY-GLSGKPSAQIVFDVDLSQEMQEQLLGAAEKIYRLLQGKGSCRIDFLVD--DEGSFW 741 Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L EIN PG T S F G+S +++ +V D Sbjct: 742 LSEINPIPGTTESSPFLTAFVRKGWSCEQIIHQLVIDG 779 >gi|758377|gb|AAA87683.1| putative D-alanine:D-alanine ligase [Lactobacillus salivarius] Length = 201 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 24/198 (12%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV- 129 + LL P+ SG+ +S +S DK + ++++ G+ +LV ++ PY Sbjct: 1 LFRLLNKPWIGSGVTSSGVSFDKDLTNKLLTLNGIRNTKYVLVT-----PENKADYPYAK 55 Query: 130 ----------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178 +KP + GSS+GI ++ ++ L +++ ++L+E+ + E+ Sbjct: 56 VAEELGETLFVKPARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVE 113 Query: 179 CGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFL 233 C V+G+ + ++ I +P+SD FY Y K+ + +P K+P + KE Q+++ Sbjct: 114 CSVLGNRDIKASKLGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKENQQMSLD 173 Query: 234 AHQAIGCRGISRSDFLFD 251 A +A+ RG++R DFL D Sbjct: 174 AFRALDNRGLARMDFLVD 191 >gi|254779285|ref|YP_003057390.1| D-alanyl-alanine synthetase A [Helicobacter pylori B38] gi|254001196|emb|CAX29162.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Helicobacter pylori B38] Length = 349 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 5 FCVLFGGASFEHEISVVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 64 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 65 KKLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV L+N + ++ LI + P+++KP GSSLG+ Sbjct: 125 ASVLSYNKYLTKLYAKDLGVKTLDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVS 184 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 185 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 242 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 299 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 300 LNEINPIPGSLANYLFDDFKT 320 >gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum] Length = 640 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 29/261 (11%) Query: 53 LAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV- 107 + FN+ F + V A+LE+L + YT +G L DK + K + SS G+PV Sbjct: 356 MVFNLCDDGFKNNPEMEAHVPALLEMLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVP 415 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163 +IL N +H + P ++KP G +S GI +V +D+ I W + Sbjct: 416 HHTILFNGDNGSLKH-VKYPVIVKPNYGDNSWGITERNVVRNRDELISAIKEIRVKWGYS 474 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF----------YSYELKY---SSLN 210 +L+E++V+G++LT ++G+ DV + + D+ +Y K+ S Sbjct: 475 GPILVEEFVEGMDLTVSILGNPPQDVV-LPILTEDYSKLPDGLPKILTYAAKWCPDSPYR 533 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGM 268 + +P ++P + +++ + CR +R D+ D + R LE+N PG Sbjct: 534 FVNSIPVELPHRLREQLIWWCRKLFAMLECRDYARFDWRLGSDGVPR---LLEVNPNPGW 590 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 F + G+S+R +L Sbjct: 591 VWDGHFAKACLVLGWSYRRML 611 >gi|86152116|ref|ZP_01070328.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840901|gb|EAQ58151.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 260.94] Length = 346 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +V+ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDDEVYLNEINPNPGSLANYLFKDF 312 >gi|15611742|ref|NP_223393.1| D-alanyl-alanine synthetase A [Helicobacter pylori J99] gi|6919861|sp|Q9ZLA5|DDL_HELPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4155237|gb|AAD06259.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] Length = 347 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + + Sbjct: 63 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + E K + Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKGFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + T A + + ++++ + + I R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|315928272|gb|EFV07588.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 257 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + A+ E I + + AS LS +K +K S GV ++ R Sbjct: 3 NLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTIL-R 61 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++E++ + I Sbjct: 62 KNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVVEEFKNNI 119 Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLA 231 + G M + + I P K +F +E KY S + ++ A + ++ ++++ Sbjct: 120 KEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSF 179 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + + R DF L +++ EIN PG +F + Sbjct: 180 KKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 223 >gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum] Length = 640 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 29/261 (11%) Query: 53 LAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV- 107 + FN+ F + V A+LE+L + YT +G L DK + K + SS G+PV Sbjct: 356 MVFNLCDDGFKNNPEMEAHVPALLEMLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVP 415 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163 +IL N +H + P ++KP G +S GI +V +D+ I W + Sbjct: 416 HHTILFNGDNGSLKH-VKYPVIVKPNYGDNSWGITERNVVRNRDELISAIKEIRVKWGYS 474 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF----------YSYELKY---SSLN 210 +L+E++V+G++LT ++G+ DV + + D+ +Y K+ S Sbjct: 475 GPILVEEFVEGMDLTVSILGNPPHDVV-LPILTEDYSKLPDGLPKILTYAAKWCPDSPYR 533 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGM 268 + +P ++P + +++ + CR +R D+ D + R LE+N PG Sbjct: 534 FVNSIPVELPHRLREQLIWWCRKLFAMLECRDYARFDWRLGSDGVPR---LLEVNPNPGW 590 Query: 269 TPVSIFPEMAAYAGYSFRELL 289 F + G+S+R +L Sbjct: 591 VWDGHFAKACLVLGWSYRRML 611 >gi|86150203|ref|ZP_01068430.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|218562426|ref|YP_002344205.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095570|sp|Q9PPC2|DDL_CAMJE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|85839319|gb|EAQ56581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360132|emb|CAL34926.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926044|gb|ADC28396.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni IA3902] Length = 346 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +++ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312 >gi|88597497|ref|ZP_01100731.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|88190089|gb|EAQ94064.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 84-25] Length = 346 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ +S P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +++ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312 >gi|315586593|gb|ADU40974.1| D-alanine--D-alanine ligase [Helicobacter pylori 35A] Length = 356 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 12 FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 71 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 72 KKLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 132 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 191 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 192 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 248 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 249 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALVRCDFFV--IENEVY 306 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 307 LNEINPIPGSLANYLFDDFKT 327 >gi|116327785|ref|YP_797505.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331556|ref|YP_801274.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120529|gb|ABJ78572.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125245|gb|ABJ76516.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 353 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 24/248 (9%) Query: 46 LAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L K + F+++ G + + L+ A EL P+T S + + +S+DK +K S Sbjct: 68 LDFTKRPVLFHLMEGFRSRNRESLIPAAAELFGFPHTGSDVYSQNVSLDKNLTKIFAQSM 127 Query: 104 GVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSS 158 G+P+ P L+ RF D S P +KP GSS GI +I ++ + L SS Sbjct: 128 GIPIVPGFLI-RFETDFTVPKEFSFPGFLKPSGEGSSFGIGEESIIHDEKDLRFKL--SS 184 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHV 214 L+E+Y+ GIE T V+G + + V + D E+ S V Sbjct: 185 RTAEFFPYLLEEYLTGIEYTISVIGSNVVGYRVSSAGRLVLRDDLKVEEVYGEKTKSKSV 244 Query: 215 LPAKIPLDIYKEVQRLAFLAHQ------AIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +P + D ++ FL Q ++G G +R D+ D L F LEIN+ PG+ Sbjct: 245 MPETLVFDCPSGLE--LFLQEQSRLFCSSLGTSGPARLDWKLDSLGNPYF-LEINLTPGL 301 Query: 269 TPV-SIFP 275 +P S FP Sbjct: 302 SPFYSTFP 309 >gi|317182047|dbj|BAJ59831.1| D-alanyl-alanine synthetase A [Helicobacter pylori F57] Length = 347 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|148926964|ref|ZP_01810641.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845048|gb|EDK22145.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8486] Length = 346 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ ++ P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DCTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +++ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312 >gi|317014150|gb|ADU81586.1| D-alanyl-alanine synthetase A [Helicobacter pylori Gambia94/24] Length = 347 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + + AS LS +K +K GV L Sbjct: 90 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEASVLSYNKYLTKLYAKDLGVKALDYAL 149 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ LI + P+++KP GSSLG+ V+K+++ + L S++ + ++LIE Sbjct: 150 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELVYAL--DSAFEYSKEVLIE 207 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + T A + + + Sbjct: 208 PFIQGVKEYNLAGCKIKTDFCFSYVE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEE 266 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + I R DF + +V+ EIN PG +F + Sbjct: 267 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318 >gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 23 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 82 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 83 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 142 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +L+ NR + P+++KP GSSLG+ Sbjct: 143 ASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVN 202 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L S++ + ++LIE ++ G++ C + D E K + Sbjct: 203 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 259 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + I R DF + +V+ Sbjct: 260 FLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEVY 317 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 318 LNEINPIPGSLANYLFDDFKT 338 >gi|257459534|ref|ZP_05624643.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268] gi|257442959|gb|EEV18093.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268] Length = 343 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + A+ E IPY I AS LS +K+ +K + + V P +VNR Sbjct: 93 NLIHGCDGEDGKMAALFEFFGIPYIGPRIEASVLSYNKILTKHLAAIANVKTLPYEIVNR 152 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ + + P ++KP GSS+GI + K + L Q+ + D ++E Y + + Sbjct: 153 TSLPNFNF---PIIVKPAHLGSSIGISIAKNESEFSYALDQAFELD--DSAIVEPYWENV 207 Query: 176 EL--TCGVMGDASLDVTEIAVPKSDFY-SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 + G D + + I PK + Y +++ KY + + + P + + + AF Sbjct: 208 KEFNLAGAKIDGKIVFSNIEEPKKEGYLNFDRKYLDFSRSGAIEPARPGALLEGKMKDAF 267 Query: 233 LAHQAIGC--RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 G + R DF +++ EIN PG +F + + Sbjct: 268 TRLYNAGSFDGALIRCDFF--EKEGEIYLNEINPNPGSLANYLFDDFS 313 >gi|308062059|gb|ADO03947.1| D-alanyl-alanine synthetase A [Helicobacter pylori Cuz20] Length = 347 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIVKPNNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|307637426|gb|ADN79876.1| D-alanine--D-alanine ligase [Helicobacter pylori 908] gi|325996016|gb|ADZ51421.1| D-alanine--D-alanine ligase [Helicobacter pylori 2018] gi|325997611|gb|ADZ49819.1| D-alanine--D-alanine ligase [Helicobacter pylori 2017] Length = 356 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K G+ L Sbjct: 99 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKALDYAL 158 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ LI + P+++KP GSSLG+ V+K+++ + L S++ + ++LIE Sbjct: 159 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELIYAL--DSAFEYSKEVLIE 216 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + T A + + + Sbjct: 217 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEE 275 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + I R DF + +V+ EIN PG +F + Sbjct: 276 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 327 >gi|224437372|ref|ZP_03658344.1| D-alanyl-alanine synthetase A [Helicobacter cinaedi CCUG 18818] gi|313143837|ref|ZP_07806030.1| ligase [Helicobacter cinaedi CCUG 18818] gi|313128868|gb|EFR46485.1| ligase [Helicobacter cinaedi CCUG 18818] Length = 345 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 P+ +++HG GEDG + A+L+ IP+ I +S +S +K +K S GV V Sbjct: 88 PNTLISLIHGADGEDGSMSALLDFYHIPFIGPRIESSVMSFNKALTKIYAQSRGVKVLDH 147 Query: 111 ILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ R +S + P P ++KP + GSS+G+ V+ K+ L+ + ++ + D +++E Sbjct: 148 EILTR---NSPNPTLPYPLILKPSRLGSSIGVSVVNKEDE--LEYAKDLAFEYDDSIVVE 202 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIY 224 + G++ C + + + E K + +E KY + T VL A I ++ Sbjct: 203 CFKSGVKEYNLAGCKIGDEFRFSIVE-EPSKKEMLDFENKYLDFSRTAQVLKADISQELE 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 K++Q+ ++ + R DF + +V+ EIN PG +F + A Sbjct: 262 KQIQQNFAKLYENAFEGALIRCDFFV--IDNEVYLNEINPIPGSMANYLFEDFA 313 >gi|66816919|gb|AAY56773.1| D-alanine-D-alanine ligase [Helicobacter pylori] Length = 347 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 49/322 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S A L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGI 141 AS LS +K +K G+ +L+N +D + + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNF-NFPFIVKPSNAGSSLGV 181 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKS 197 V+K+++ + L S++ + ++LIE ++ G++ C + D E K Sbjct: 182 NVVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQ 238 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +F ++ KY + A + + ++++ + + I R DF + +V Sbjct: 239 EFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEV 296 Query: 258 FWLEINVQPGMTPVSIFPEMAA 279 + EIN PG +F + Sbjct: 297 YLNEINPIPGSLANYLFDDFKT 318 >gi|307747710|gb|ADN90980.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni M1] Length = 346 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ + P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTML-RKNQNSKEKLRFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ + I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +V+ EIN PG +F + Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312 >gi|307718300|ref|YP_003873832.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila DSM 6192] gi|306532025|gb|ADN01559.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila DSM 6192] Length = 646 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 27/264 (10%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K D FN+ F D V A+LE+L IPYT + A DK + V GV Sbjct: 372 KIDYVFNLCDEGFFNDPRKELHVPALLEMLGIPYTGATPQGLAFCYDKSLVRGVAKEMGV 431 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS------SS 159 PV + ++ ++ + P ++KP G SS GI +K LD L + + Sbjct: 432 PVPRAFFIDPTSIVFEVPFGFPMIVKPNLGDSSFGI--TQKSVVWSLDELSACISEIRDT 489 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY--- 206 + + +L+E+++ G +LT G++G+ D + + + D+ + YE K+ Sbjct: 490 FGYEKPVLVEEFLTGKDLTVGIIGNPPDDYMVLPIVEEDYSALPPELPRICGYEAKWLPD 549 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +PA +P K + + + CR +R D+ D + LE+N Sbjct: 550 SPYWKALQSIPAGLPEATEKSIVEWCVRLFERLECRDYARFDWRCD-ADGNPYLLEVNPN 608 Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289 PG +MA AG + ++L Sbjct: 609 PGWCWDGHLAKMARLAGMEYPQML 632 >gi|332673460|gb|AEE70277.1| D-alanine-D-alanine ligase [Helicobacter pylori 83] Length = 356 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A AL+D +D + L+ A +K Sbjct: 12 FCVLFGGASFEHEISIVSTIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 71 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 72 KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ +LI + P+++KP GSSLG+ Sbjct: 132 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 191 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 192 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 248 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 249 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 306 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 307 LNEINPIPGSLANYLFDDFKT 327 >gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana] Length = 515 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 130/317 (41%), Gaps = 77/317 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39 + ++ GG S+ER +SL+S ++ ++ G VS ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 40 -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 S+ + HL D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135 + DK + + G P+ LV FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187 GSS+G+ V IKK + L+ + D++++E ++ D E T V+ S Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312 Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230 V TE+ + PK + + Y KY + T+ P + P+ + K ++ Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372 Query: 231 AFLAHQAIGCRGISRSD 247 A L Q +G R +R D Sbjct: 373 ASLIFQKLGLRDFARID 389 >gi|283954371|ref|ZP_06371892.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] gi|283794170|gb|EFC32918.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] Length = 346 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 9/233 (3%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ D N++HG GEDG + A+ E I + + ASALS +K +K S GV Sbjct: 85 LECDCVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASALSFNKELTKLYAKSIGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ + + LI P +IKP + GSS+GI ++K ++ L+ + + + LL+ Sbjct: 145 DYTMLRKGQNFKEKLIFPC-IIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLLV 201 Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224 E++ I+ G M + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKSDIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLGEELK 261 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +++ + + + R DF L +V+ EIN PG +F + Sbjct: 262 TKLKDNFKKIYNPLFKGALIRCDFF--VLDNEVYLNEINPNPGSLANYLFKDF 312 >gi|239617317|ref|YP_002940639.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1] gi|239506148|gb|ACR79635.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1] Length = 321 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 127/262 (48%), Gaps = 22/262 (8%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D AFN+ G + AIL+ L +P+T S + A+ +DK +K ++ G+P Sbjct: 49 DFAFNLSTGGGKLSKQVHAPAILDRLGVPFTGSSAIVHAICIDKSITKLILEKSGIPTPR 108 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQ 165 + ++ + P +V KP GS+LGI V+K + + + + + +N Sbjct: 109 FVKIDDPNNIPEIDFYPAFV-KPSCEGSALGISRDSVVKNQKELKKQVEMIMNKFNQ--P 165 Query: 166 LLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKSDFYSYELKYS-SLNSTHVL 215 ++E+++DG E T G++G+ + +D + + FYS+ +K+ +T++ Sbjct: 166 AIVEEFIDGREFTVGIIGNGNDLKVLPILEIDFSNLPEGLEHFYSHRVKHHYGEKTTYIC 225 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIF 274 PA++ K+++ A A +AIG +R D + + +E+N P + PV S Sbjct: 226 PARLEESQRKKLENYAKRAFKAIGLFDFARIDVRMR--VNEFYIIEVNSLPLLVPVYSDL 283 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 +M A G+ + +L+ ++E A Sbjct: 284 TKMLAPIGWKYEDLVNAILEAA 305 >gi|308182897|ref|YP_003927024.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4] gi|308065082|gb|ADO06974.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4] Length = 347 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 131/321 (40%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38 VL GG S E E+S+ S L+D +QI Sbjct: 3 FCVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62 Query: 39 DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L+L H ++ L N++HG GEDG + ++LE I + I Sbjct: 63 KKLSPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ +L+N R ++ LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDYVLLNERNRANALDLIGFNFPFIIKPNNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+ + + L ++ + ++LIE ++ G++ C + D E K + Sbjct: 183 VVKEKKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IEDEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|237751270|ref|ZP_04581750.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879] gi|229372636|gb|EEO23027.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879] Length = 349 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L L N++HG GEDG++ + + +I Y + AS LS +K +K CGV Sbjct: 89 LNTGLLLNLIHGGDGEDGVLSGLFDFYKIAYIGPRLEASILSYNKRLTKLYAKECGVETL 148 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 P ++ R + PY+IKP GSS+G+ V++ + L ++ ++++I Sbjct: 149 PYYVLKR-NETCEIPFELPYIIKPTCLGSSIGVCVVEDQAKLSYGL--DCAFEFSNEVII 205 Query: 169 EQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDI 223 E + GI+ V G+ L + E V K D +E KY + T + A+I + Sbjct: 206 EPFKKGIKEYNLAGTKVNGEFILSLIEEPV-KKDLLGFEDKYLDFSRTEEIKNAEITESL 264 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 K + + + R DF S K++ EIN PG +F + + Sbjct: 265 TKNLHEAFKKIYNTTFEGALIRCDFFVS--SDKIYLNEINPIPGSMANYLFSDFES 318 >gi|297379935|gb|ADI34822.1| D-alanine--D-alanine ligase [Helicobacter pylori v225d] Length = 296 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K GV +L Sbjct: 39 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKALDHVL 98 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ +LI + P++IKP GSSLG+ V+K+++ + L ++ + ++LIE Sbjct: 99 LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 156 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + A + + + Sbjct: 157 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 215 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + + R DF + +V+ EIN PG +F + Sbjct: 216 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 267 >gi|322699308|gb|EFY91071.1| hypothetical protein MAC_02957 [Metarhizium acridum CQMa 102] Length = 357 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 132/304 (43%), Gaps = 27/304 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74 KA A+ LE G V+ + S+ LA H DLAFN+ G G + V A+LE Sbjct: 41 KAVAAGLESLGHDVTIVPGVSSLVEHLAAGKHKNWDLAFNMAQGFHGPARESHVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKP 132 IPYT S AL +K +K +++ GVP P +++ + + P P +KP Sbjct: 101 YLIPYTFSDAATMALCQNKANTKIILNHHGVPSAPFMVIPSEHLSIHATLPPEYPLFVKP 160 Query: 133 LKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 GSS GI K + + L + + + G +L+E ++ G E T ++G S Sbjct: 161 ATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSHSR 220 Query: 187 -LDVTE---IAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDI----YKEVQRLAFLAH 235 + + E P++ +++ E S L+ +L D+ K ++A Sbjct: 221 VVGIREHIWQTFPENGYHATEEFASWKSKLSEGCLLRYNDAHDMDDPQVKAACQVALDTW 280 Query: 236 QAIGCRGISRSDFLFDPLSRKVF--WLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292 A+GCR R D F+ LE+N G+ P S P A G SF LL + Sbjct: 281 TALGCRDAGRVDIRFNSDDADAIPNVLEVNPIAGLLPGHSPLPASAEENGLSFEALLTAI 340 Query: 293 VEDA 296 ++ A Sbjct: 341 IKSA 344 >gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus 5a2] gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus 5a2] Length = 475 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 12/108 (11%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D AF LHG GEDG +Q +LE +IPY+ SGIL +A+ +DK+ K+ + G V P Sbjct: 114 DFAFLSLHGPCGEDGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYS 173 Query: 112 LVNRFTMDSQ-----------HLISPPYVIKPLKGGSSLGI-IVIKKD 147 +++R T H + P VIK + GSS+G+ IV +KD Sbjct: 174 IIDRNTWQKTTNKDALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKD 221 >gi|313682067|ref|YP_004059805.1| d-alanine/d-alanine ligase [Sulfuricurvum kujiense DSM 16994] gi|313154927|gb|ADR33605.1| D-alanine/D-alanine ligase [Sulfuricurvum kujiense DSM 16994] Length = 345 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + ++L+ IP+ AS LS DK +K + +S G+ P ++++ Sbjct: 92 NLIHGGDGEDGSIASLLDFFHIPFIGPRKEASMLSFDKHYTKWLANSLGIKTLPYEILHK 151 Query: 116 FTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + + P++IKP + GSS+G+ ++++++ LD ++ +LIE ++ G Sbjct: 152 --EDKRAVKTAYPFIIKPARLGSSIGVSIVREERE--LDYALDVAFEFDSVVLIEPFIAG 207 Query: 175 IELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRL 230 ++ G ++ + + P K++F +E KY + S +V A + + ++++ Sbjct: 208 VKEYNLAGFSARGEMNYSIVEEPQKAEFLDFEKKYLDFSRSGNVAEASVSDTLVQQLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + R DF + +V+ EIN PG +F + Sbjct: 268 FKTIYLPLFEGALIRCDFF--EIEGEVYLNEINPIPGSMANYLFDDFG 313 >gi|32265630|ref|NP_859662.1| D-alanyl-alanine synthetase A [Helicobacter hepaticus ATCC 51449] gi|39930848|sp|Q7VJW2|DDL_HELHP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|32261678|gb|AAP76728.1| D-alanine-D-alanine ligase [Helicobacter hepaticus ATCC 51449] Length = 350 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 13/237 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 P N++HG GEDG V A+L+ +P+ I +S +S +K+ +K + GV V Sbjct: 88 PHTLINLIHGADGEDGSVSALLDFYHLPFIGPRIESSVMSFNKVFTKIFAAQRGVKVLDY 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ R +H I+ P ++KP + GSS+G+ VI +++ LD + ++ + D ++ E Sbjct: 148 EILTRANPHLKH-IAYPIILKPARLGSSIGVSVINEEKE--LDYGRDLAFEYDDTIIAES 204 Query: 171 YVDGIE---LTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST-HVLPAKIPLD 222 + G++ L + + S D ++ K + +E KY + T VL A I Sbjct: 205 FKSGVKEYNLAGCRVKNGSQDEYRFSIIEEPSKKELLDFERKYLDFSRTAQVLQADISSA 264 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + ++Q ++ + R DF + +V+ EIN PG +F + Sbjct: 265 LVAKLQENFMKLYENAFEGALIRCDFFV--IDDEVYLNEINPIPGSMANYLFEDFVG 319 >gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545] Length = 918 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 82/330 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +AVL GG S+ER VSL+S ++ L +GF V +D Sbjct: 32 VAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTPSDF 91 Query: 40 -------RSVGL-----VLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 R G+ + + L+ +AF LHG FGEDG++Q LE +P+ + + Sbjct: 92 DFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDAM 151 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPY---VIKP 132 + + DK + +++ G P L+ + H + P + V+KP Sbjct: 152 HACRAFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYVVVKP 211 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYV-DGIELTCGVMGDASLDV 189 +GGSS+G+ + + + L S + G ++++E+Y G+E T V+G + V Sbjct: 212 ARGGSSIGVSIARG--VVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVLGTTNEPV 269 Query: 190 ----TEIAV--------------------PKSDFYSYELKYSSLNSTHVL---PAKIPLD 222 TEI + + +F+ + KY L + HV+ PA+ Sbjct: 270 PLIPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKY--LPTMHVVYHTPARFGTG 327 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +++R A + +G R +R D F P Sbjct: 328 AIDKIRRNAASIFKLLGLRDYARLDGFFMP 357 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 112/306 (36%), Gaps = 94/306 (30%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---QVVSSCGVPVCPSI 111 FN +HG GEDG +QA+ YT SG +S L DK + + +S G+ + Sbjct: 593 FNAVHGGCGEDGTLQALFTEARASYTGSGPASSRLCFDKAATGGELKPLSYFGI-----L 647 Query: 112 LVNRFTMDSQHL--------------------ISP-PY--VIKPLKGGSSLGIIVIKKDQ 148 NR + S+ L + P P+ IKP G S G+ +K Sbjct: 648 SYNRLLVSSRVLEVFLGQTSIVATIWDAFVATVGPAPFGLCIKPNSDGCSTGVARLKGSD 707 Query: 149 SI---------------PLDLLQSSSWNH--------GDQLLIEQYV-----------DG 174 + P DL +S H L+E ++ G Sbjct: 708 DLLAYATAIFNHQSHLHPGDLPMASGIAHIIELPEEIPSNFLVEPFIPTATVCITRCRSG 767 Query: 175 I----------------ELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 I E+T GV+G A+L + V D S E K+ + ++ Sbjct: 768 IEELYFEDVAFSTTRWIEVTVGVVGTKGHTAALHPSLTIVGHGDVLSLEEKFQAGTGVNI 827 Query: 215 LPAKIPLDIYK-EV-----QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 P +P I EV R+AF A+ A+ G +R D + V +E N PG+ Sbjct: 828 TP--LPATIASAEVLSAARTRIAFAAN-ALDIEGFARIDLFLHVDTGDVMIVEANTVPGL 884 Query: 269 TPVSIF 274 TP ++ Sbjct: 885 TPSTVL 890 >gi|308272544|emb|CBX29148.1| hypothetical protein N47_J01290 [uncultured Desulfobacterium sp.] Length = 335 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 29/304 (9%) Query: 7 GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNF 62 G S E S + A AL D G+K +I +++ L+ K D+ FN+ G F Sbjct: 17 GFSEEDAAEFDSEETIDAIEKALSDLGYKTERIGHIKNLVKYLSQGKRWDIVFNIAEGCF 76 Query: 63 G--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 G + + AIL+ +I YT S L +L+++K +K +V + G+ LV + + +D Sbjct: 77 GAGREAQIPAILDAYKIAYTFSDPLVLSLTLNKAVTKLIVQNLGIATPAFALVEKLSDID 136 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL----LIEQYVDGI 175 S L P +V KP+ G+ GI K + D L + ++ D+ L+E ++ G Sbjct: 137 SISLPFPLFV-KPVAEGTGKGISAASK--TTNKDDLYNVCFDLLDRFKQPALVETHLPGR 193 Query: 176 ELTCGVMGDAS----LDVTEIAV---PKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKE 226 E T G++G V E+ + + D YSY + KY L S + K+ D K Sbjct: 194 EFTVGIIGTGEKARVAGVIEVLLNEHAEGDSYSYINKKKYEELVSYRLADDKMARDTAK- 252 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSF 285 +A A + C R D D F +E+N G+ P+ S P + +G S+ Sbjct: 253 ---VALDAWVGLKCLDAGRIDIRSDVNGYPNF-IEVNPLAGLHPIHSDLPILCRLSGISY 308 Query: 286 RELL 289 +EL+ Sbjct: 309 KELI 312 >gi|152990841|ref|YP_001356563.1| D-alanyl-alanine synthetase A [Nitratiruptor sp. SB155-2] gi|189083044|sp|A6Q3Z7|DDL_NITSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151422702|dbj|BAF70206.1| D-alanine-D-alanine ligase [Nitratiruptor sp. SB155-2] Length = 342 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ N++HG GEDG + ++LE EI Y I S +S K+ +K CG+ V P Sbjct: 87 DVVINLVHGADGEDGKLASLLEFFEIDYIGPRIEGSVISYSKLLTKLYAKECGIEVLPYQ 146 Query: 112 LVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+ + D + + P +IKP GSS+G+ V+ S L+ ++ D++LIE Sbjct: 147 LLRK--QDKKIIDFEYPVIIKPNHLGSSIGVSVVY--DSSELEYALDVAFEFDDEVLIEP 202 Query: 171 YVDGIELT--CGVMGDASLDVTEI-AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKE 226 +++GIE G G + ++I AV K +E KY S V A + + Sbjct: 203 FIEGIEEYNLAGAKG-QTFHFSKIEAVKKEKLLDFEKKYLDFGRSGEVKDASLNETLRLH 261 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ + + I R DF K++ EIN PG +F + A Sbjct: 262 IRNAFEKIYDPLFSGAIIRIDFFVR--DGKLYLNEINPVPGSLANYLFGDFRA 312 >gi|261838029|gb|ACX97795.1| D-alanine:D-alanine ligase A [Helicobacter pylori 51] Length = 347 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K GV +L Sbjct: 90 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYVL 149 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ +LI + P+++KP GSSLG+ V+K+++ + L ++ + ++LIE Sbjct: 150 LNEKNRTNALNLIGFNFPFIVKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 207 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + A + + + Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + + R DF + +V+ EIN PG +F + Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IKNEVYLNEINPIPGSLANYLFDDFKT 318 >gi|217033771|ref|ZP_03439197.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10] gi|216943820|gb|EEC23260.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10] Length = 347 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K GV +L Sbjct: 90 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYVL 149 Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + ++ +LI + P+++KP GSSLG+ V+K+++ + L ++ + ++LIE Sbjct: 150 LNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 207 Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G++ C + D E K +F ++ KY + A + + + Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ + + + R DF + +V+ EIN PG +F + Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318 >gi|153952610|ref|YP_001398281.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. doylei 269.97] gi|189083035|sp|A7H451|DDL_CAMJD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152940056|gb|ABS44797.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. doylei 269.97] Length = 346 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ + N++HG GEDG + A+ E I + + AS LS +K +K S GV Sbjct: 85 LECECVINLIHGGDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ R +S+ + P +IKP + GSS+GI ++K ++ L+ + + + L++ Sbjct: 145 DYTML-RKGQNSKEKLRFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201 Query: 169 EQYVDGIE---LTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223 E++ + I+ L V+ D + + I P K +F +E KY S + ++ A + ++ Sbjct: 202 EEFKNNIKEYNLAGCVINDKFV-FSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEEL 260 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++++ + + + R DF L +V+ EIN PG +F + + Sbjct: 261 KEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDFST 314 >gi|78777406|ref|YP_393721.1| D-alanyl-alanine synthetase A [Sulfurimonas denitrificans DSM 1251] gi|123550178|sp|Q30R95|DDL_SULDN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78497946|gb|ABB44486.1| D-alanine--D-alanine ligase [Sulfurimonas denitrificans DSM 1251] Length = 345 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + AIL+ I Y + AS S DK +K + + GV S ++ Sbjct: 92 NLIHGGDGEDGTIAAILDFFSIKYIGPRVDASVFSYDKRYTKWLCHARGVKCVESQELSS 151 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + S I+ P ++KP + GSS+G+ ++ KD+S LD S++ + +++E +++G+ Sbjct: 152 -SEHSNIKIAYPIIVKPSRLGSSIGVSIV-KDES-KLDYALDSAFEFDNTVIVEPFLEGV 208 Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLA 231 + G + I P K +F +E KY + S +V A+I ++ +++ Sbjct: 209 KEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKKYMDFSRSGNVDSAEISKELESKLRASF 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ + + R DF ++ +VF EIN PG +F + Sbjct: 269 EKVYKNLFEGALIRCDFFV--VNGEVFLNEINPIPGSMANYLFDDFGG 314 >gi|154148214|ref|YP_001406160.1| D-alanyl-alanine synthetase A [Campylobacter hominis ATCC BAA-381] gi|153804223|gb|ABS51230.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter hominis ATCC BAA-381] Length = 342 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 18/239 (7%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 ++ D+ NV+HG GEDG + ++LE IP+ + AS +S DK +K + + G+ Sbjct: 83 TRVEADVFVNVIHGCDGEDGKLASLLEFFNIPFIGPRLEASVISYDKELTKNLAKAAGIK 142 Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ T+ S I P ++KP GSS+GI ++K + + +++ Sbjct: 143 TIEYQIIKSSTLPS---IPYPLIVKPSHLGSSIGIKIVKNHNELSYAI--DTAFELDSSA 197 Query: 167 LIEQYVDGIELT--CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPL-- 221 +IE Y++ ++ G D ++ + I P+ D F Y KY S P + L Sbjct: 198 IIEPYIEDVKEYNLAGCKIDGEIEFSIIEEPQKDKFLDYFQKYMDF-SRSGKPQEANLGL 256 Query: 222 ---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 D KE R + + G I R DF ++ +V+ EIN PG +F + Sbjct: 257 SVKDNMKEAFRRVYNYGEFDG--AIIRCDFFV--INNEVYLNEINPNPGSLANYLFNDF 311 >gi|327334538|gb|EGE76249.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1] Length = 178 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 59/103 (57%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 7 VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 GE+G + +L+L+ IPY S +S DK + + V++ G+ Sbjct: 67 GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVATAGI 109 >gi|307720863|ref|YP_003892003.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294] gi|306978956|gb|ADN08991.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294] Length = 345 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 74/319 (23%), Positives = 133/319 (41%), Gaps = 49/319 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF----- 55 + +L GG S E E+S+ S L + D D + LV A + F Sbjct: 3 LTILFGGASFEHEISIVSAITLKEKLSNFDLTFIFCDSDHTFYLVEASKMKAVTFSKGEH 62 Query: 56 -----------------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 N++HG GEDG + A+L+ I Y + A Sbjct: 63 KKMPVLTLAQGAFVQKSMFSKSEYNSVVLNLIHGADGEDGTIAALLDFYSIKYIGPRVDA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPY--VIKPLKGGSSLGIIV 143 S DK +K + + GV ++++ ++H I PY +IKP GSS+G+ + Sbjct: 123 CTFSYDKRYTKYLCEAIGVKSVKYEVMHK----NEHCNIQTPYPIIIKPSSLGSSIGVSI 178 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200 + KD+S LD ++ D +++E +++G++ G + ++ + + P K +F Sbjct: 179 V-KDES-ELDYALDVAFEFDDTVIVEPFLEGVKEYNLAGYYANGAMHYSIVEEPHKEEFL 236 Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 +E KY + S VL A + ++ ++ ++ + + R DF + +V Sbjct: 237 DFEKKYMDFSRSEQVLTADVSEELTLRLKTNFEKVYRGLFEGALIRCDFFV--FNDEVLL 294 Query: 260 LEINVQPGMTPVSIFPEMA 278 EIN PG +F + A Sbjct: 295 NEINPIPGSMANYLFEDFA 313 >gi|170104100|ref|XP_001883264.1| predicted protein [Laccaria bicolor S238N-H82] gi|164641717|gb|EDR05976.1| predicted protein [Laccaria bicolor S238N-H82] Length = 375 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 145/327 (44%), Gaps = 52/327 (15%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLA--------HLKPDLAFNVLHGN---FGEDGLVQ 69 A A AL G++V ++ R++ LA H D+ FN+ G G +G V Sbjct: 40 AIAEALTALGYRVDRVGNARALISRLASYDREDSFHCPWDIVFNICAGRSGIAGREGHVP 99 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISP-- 126 +ILE IP+ S +L +DK ++K V+ G+ P +V+ T + SP Sbjct: 100 SILECYNIPFVLSDSSTFSLCLDKAKTKMVLEFSGIATAPFAVVHPGQTAEDAIQKSPHR 159 Query: 127 -------PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176 P +KP + GI + K + S ++QS + G +LIE++++G E Sbjct: 160 PLLYRQLPLFVKPCTESTGKGIWKMSKITNWSQLNQVVQSLQYKFPGHDMLIEKFLNGRE 219 Query: 177 LTCGVMGDA-------SLDVT----------EIAVP-----KSDFYSYELKYSSLNSTHV 214 T G++G ++++ + A P +DFYS+ +K S ++ + Sbjct: 220 FTVGIVGTGENARVIFAMEIKYRLHETKADHDAAQPIASEDDADFYSFAIK-SCVHWNEI 278 Query: 215 LPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEINVQPGMTP 270 + D + LA A++ +GCR + R D + DP + +E+N PG+ P Sbjct: 279 VDLCNGSDQLATRAGELALRAYRCMGCRDVGRIDVRCDVLDPDLAQPHIMELNPLPGIQP 338 Query: 271 -VSIFPEMAAYAGYSFRELLLWMVEDA 296 S + A + G S+ L+ +++ A Sbjct: 339 GYSDLVKGAEFVGISYEALVGQIMDSA 365 >gi|322380385|ref|ZP_08054591.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5] gi|321147175|gb|EFX41869.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5] Length = 348 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 50/323 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39 +L GG S E E+S+ S A L+ D K ID Sbjct: 4 GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 63 Query: 40 RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S LVL H + + N++HG GEDG + + L+ + + + Sbjct: 64 KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 LS K +K + G+ + P I + + + + + P ++KP + GSS+GI VIK Sbjct: 124 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 183 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197 + I L + ++ Q+LIE + G++ C + G V E K Sbjct: 184 AKDIAYVLDEVFEFD--SQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 240 Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ +E KY T V A I + ++++++ L + I R DF ++ + Sbjct: 241 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279 V+ EIN PG +F + ++ Sbjct: 299 VYLNEINPIPGSLAHYLFEDFSS 321 >gi|322378889|ref|ZP_08053306.1| D-alanine--D-alanine ligase [Helicobacter suis HS1] gi|321148699|gb|EFX43182.1| D-alanine--D-alanine ligase [Helicobacter suis HS1] Length = 350 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 50/323 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39 +L GG S E E+S+ S A L+ D K ID Sbjct: 6 GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 65 Query: 40 RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S LVL H + + N++HG GEDG + + L+ + + + Sbjct: 66 KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 LS K +K + G+ + P I + + + + + P ++KP + GSS+GI VIK Sbjct: 126 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197 + I L + ++ Q+LIE + G++ C + G V E K Sbjct: 186 AKDIAYVLDEVFEFD--SQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 242 Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ +E KY T V A I + ++++++ L + I R DF ++ + Sbjct: 243 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279 V+ EIN PG +F + ++ Sbjct: 301 VYLNEINPIPGSLAHYLFEDFSS 323 >gi|317154408|ref|YP_004122456.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944659|gb|ADU63710.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] Length = 334 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 39/306 (12%) Query: 16 LSSGKACASALE-DAGFKVSQID---------VDR--SVGLVLAHL----KPDLAFNV-- 57 L G +C A E D+ ++ I+ VDR ++ ++A L + D+ FN+ Sbjct: 14 LKEGLSCEEAAEFDSEVTIAGIERVLTGLGHAVDRIGNISALVARLAAGDRWDMVFNIAE 73 Query: 58 -LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG G + V A+L+ IPY+ SG AL++ K + VV S GV +V R Sbjct: 74 GLHG-LGREAQVPALLDAWSIPYSFSGPELMALTLHKGWTNAVVRSLGVATADFAVVTRI 132 Query: 117 T-MDSQHLISPPYVIKPLKGGSSLGII--VIKKD----QSIPLDLLQSSSWNHGDQLLIE 169 +DS L P +V KP+ G+S GI + +D + + DLL + L+E Sbjct: 133 EDVDSMSLPFPLFV-KPVAEGTSKGITERSLVRDPAALREVCADLLTTFR----QPALVE 187 Query: 170 QYVDGIELTCGVMGDAS----LDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 Y+ G E T G++G V E+ AV K D +Y + + V + ++ Sbjct: 188 TYLPGREFTVGLLGSGDESRVAGVIEVRAVGKGDATAYTYENKQDWTRRVAYELVDDEVA 247 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGY 283 LA A + +GC R D F +E+N PG+ P S P + G Sbjct: 248 MAAASLALKAWRGLGCLDAGRIDVRLGADGAPRF-IEVNPLPGLNPESSDLPILWRLGGK 306 Query: 284 SFRELL 289 S+ L+ Sbjct: 307 SYDALI 312 >gi|317178905|dbj|BAJ56693.1| D-alanyl-alanine synthetase A [Helicobacter pylori F30] Length = 347 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 47/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 VL GG S E E+S+ S A L+D +D + LV A +K Sbjct: 3 FCVLFGGASFEHEISIVSAIALKEVLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKE 62 Query: 52 D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLILTRNGLLKSSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142 AS LS +K +K GV +L+N + ++ LI + P++IKP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIGFNFPFIIKPSNAGSSLGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198 V+K+++ + L ++ + ++LIE ++ ++ C + D E K + Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQEVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F ++ KY + A + + ++++ + + + R DF + +V+ Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318 >gi|121998283|ref|YP_001003070.1| hypothetical protein Hhal_1501 [Halorhodospira halophila SL1] gi|121589688|gb|ABM62268.1| conserved hypothetical protein [Halorhodospira halophila SL1] Length = 348 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 21/266 (7%) Query: 51 PDLAFNVLHGNFGE----DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 P+LA N+ + + + A+LEL EIPYT +G A LS DK + + +S GV Sbjct: 69 PELAVNLCDNGYCNRLELEANIPALLELFEIPYTGTGGAAMGLSRDKAAVRALAASLGVA 128 Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGD 164 V ++ P VIKP G S+G+ + +D L+ + + Sbjct: 129 VPEERTIDLSDPTPALPERYPAVIKPNDGCGSIGMEPDCVVEDAHQAQAYLRRLAGSGAA 188 Query: 165 QLLIEQYVDGIELTCGVMGDAS----------LDVTEIAVPKSDFYSYELKYSS----LN 210 +L ++Y+ G E T G++G+ + +D T + SY K Sbjct: 189 WVLAQEYLPGAEYTVGLVGNPATGLLVLPALVVDYTALPPELPPILSYGSKVDPASPYYQ 248 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA++ + ++ A +G R +R DF D L L+ N P P Sbjct: 249 ALRFAPAQLSEEKRSAMEVAARRLFARVGARDYARVDFRED-LRGVPRLLDFNNHPSWGP 307 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 MA YAGYS+ +LL +V A Sbjct: 308 DGKLAMMAGYAGYSYADLLERIVRAA 333 >gi|237753178|ref|ZP_04583658.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC BAA-430] gi|229375445|gb|EEO25536.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC BAA-430] Length = 345 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 9/226 (3%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + ++L+ IPY A LS DK K +S GV ++ R Sbjct: 92 NLIHGGDGEDGTLASLLDFYGIPYIGPRNPACVLSYDKELIKGFAASRGVKCLAHRVLYR 151 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + L P +IKP + GSSLGI V++ +++ L S++ + ++++IE +++GI Sbjct: 152 NDLVPSDL-EFPIIIKPARLGSSLGIQVVESQENLQYAL--DSAFEYDEKVIIEPFIEGI 208 Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 + G G + + I P KS F +E KY + T D K+ + +F Sbjct: 209 KEYNLAGFKGKDGIQFSFIEEPEKSKFLDFEKKYLDFSRTSNAKEAEISDALKQALQESF 268 Query: 233 LAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 G + R DF + EIN PG +F + Sbjct: 269 TRLYNNAFEGALIRCDFFIK--DNDCYLNEINPVPGSLANYLFTDF 312 >gi|149922566|ref|ZP_01910996.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1] gi|149816593|gb|EDM76088.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1] Length = 338 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 28/291 (9%) Query: 26 LEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNVL---HGNFGEDGLVQAILELLEIPY 79 LE+ G V + V S+ L +P + FN+L G+ LV A LEL + Y Sbjct: 43 LENYGHTVLVVGVSDSLEPLERALDEFRPHVVFNLLEEFQGSRAGSHLVLAYLELRGVAY 102 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T ++ DK SK ++ GV ++V + + P ++K L G +S Sbjct: 103 TGCNPRGQMMAQDKALSKALLLHYGVQTPDFVVVPVGRKPPRKRLRFPLIVKSLHGDASE 162 Query: 140 GII---VIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191 G+ V++ + +D + +HGD L +E+Y+ G EL CGV+G L V E Sbjct: 163 GLAQASVVRSPSKLAARVDFIHR---HHGDAL-VEEYISGRELYCGVIGYRQLTAFPVWE 218 Query: 192 IAVPK---------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + K + ++L Y + PA++P + + +Q ++ A + G Sbjct: 219 LRMTKLPTSALNIATQRVKWDLAYQDRVGVELGPARLPPALERRIQDMSKRAFSLLKMTG 278 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R D+ + ++LE N + V F A AG S+ ELL ++ Sbjct: 279 WGRMDYRLAE-DGEPYFLEANPNGDIAHVEEFASSAKAAGLSYLELLHRLI 328 >gi|332703219|ref|ZP_08423307.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332553368|gb|EGJ50412.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 339 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 19/259 (7%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DL FN+ G FG + + +L+ IPYT S + AL + K +K VV + G+P P Sbjct: 66 DLVFNIAEGLNGFGRESQIPCVLDWHGIPYTFSEPMTLALGLHKGMTKHVVRAAGIPT-P 124 Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQL 166 V ++ + P P +KP+ G+ LGI + D++ +D + Sbjct: 125 DFAVVAEPAEAAKVDLPFPLFVKPVAEGTGLGIGSASRVTDKAGLMDACARLIERFRQPV 184 Query: 167 LIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 L+E ++ G ELT GV+G +L+V Y Y K H +I Sbjct: 185 LVETFLPGRELTVGVVGTGAKARSVGALEVIFGDQADPSAYGYINKQDWERRMHY---RI 241 Query: 220 PLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEM 277 D + +++A A +A+GCR R D D F +E+N G+ P S P + Sbjct: 242 ADDAEARTAEQVALDAWRALGCRDGGRVDLRLDGAGVPNF-IEVNPLAGLNPTYSDLPIL 300 Query: 278 AAYAGYSFRELLLWMVEDA 296 ++EL+ +V A Sbjct: 301 CRLNNMPYQELIAAIVHSA 319 >gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126] gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126] Length = 894 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 57/295 (19%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F LHG GEDG VQA LE L IPY S + +S ++++K + +++ + G+ V Sbjct: 587 DVTFIALHGRPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISVADHR 646 Query: 112 LV--NRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIK----------------- 145 LV N++ + + I S P + KP G S + IK Sbjct: 647 LVFENKWQSNKEAEIAAIEEQLSYPLIAKPADDGCSSAVKKIKNKAELEAFAGMMFRPQA 706 Query: 146 ---KDQSIPLDLLQSSSWNHGDQLLIEQYVDG------IELTCGVMG----DASLDVTEI 192 +D + L L ++ + + L+E+ ++ +E+T G++ D S++ EI Sbjct: 707 EFIEDLANILKLKKNEEFPQKNFFLLEELIEKKDAKYFLEITGGLLTHFKEDGSIEY-EI 765 Query: 193 AVPKS-----DFYSYELKYSSLNSTHVLPAKIP--LDIYKEV--QRLAFLAHQA--IGCR 241 P + S E K+ + ++ PA+ + YK V Q A L A + Sbjct: 766 FEPSEALAGGEVLSLEEKFLAGEGQNITPARYTPQAENYKVVAEQVKATLKKTAEVLNIT 825 Query: 242 GISRSDFL---FDPLSRKVFWLEINVQPGMTPVS-IFPEMA--AYAGYSFRELLL 290 G +R D ++ LS + +E+N PGMTP + IF + A Y Y F + +L Sbjct: 826 GYARIDAFVRVYEDLSVETIIIEVNSLPGMTPATCIFHQTAINGYKPYDFIDKIL 880 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%) Query: 33 VSQIDVDRSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +S D D+ + V + P D AF LHG +GEDG +Q ILE IP++ +GIL Sbjct: 86 LSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHGPYGEDGNIQGILEWNGIPFSGAGIL 145 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKG 135 SA+ + K+ +Q + G S ++N+ + Q + P VIK Sbjct: 146 PSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNHQPHENIYQNLKKELGLPLVIKAPHQ 205 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSW 160 GSS+G+ ++ +D + L S+ Sbjct: 206 GSSIGVSILNEDDPNKFEKLVQKSF 230 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFY 200 K QSI L + S + LLIE +++G E +C V+ D + L TEI K D + Sbjct: 290 KKQSIKLKAIDSE-----NSLLIESFIEGKEFSCIVIQDENERPIALPPTEIRKGK-DVF 343 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY S + P P DI ++++ +A+ +R D F KVF Sbjct: 344 DYRSKYLPGISRKITPIDAPQDIIEKIRSQCAALFKALQIDVYARIDG-FITKEGKVFLN 402 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + N GM P S F AA G + + L +++ Sbjct: 403 DPNTTSGMLPSSFFFHQAAEIGLNPSQFLSYII 435 >gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor] gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor] Length = 945 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 133/339 (39%), Gaps = 81/339 (23%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ + + S+ + H+K A F +HG GEDG +Q +LE +P+T G + Sbjct: 602 AGFDIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPFTGPGPI 661 Query: 86 ASALSMDKMRSKQVV---SSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIK 131 AS +DK+ S V +S GV P S LV+ + L + +K Sbjct: 662 ASRTCIDKVASSLAVDHLASYGVHTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVK 721 Query: 132 PLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQLLI 168 P + G S G+ + +K Q +P + L S HG + L+ Sbjct: 722 PARDGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCL---SRAHGVIEMPVPPPESLIF 778 Query: 169 EQYV-------------------------DGIELTCGVMGDA----SLDVTEIAVPKSDF 199 E ++ D +E+T GV+G SL+ + D Sbjct: 779 EPFIETDEIIISNKLGNGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDI 838 Query: 200 YSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 S E K+ ++ P + D + ++ + A+G G SR D + S + Sbjct: 839 LSLEEKFQGGTGINLTPPPATIMGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGE 898 Query: 257 VFWLEINVQPGMTPVSIF------PEMAAYAGYSFRELL 289 V +E+N PGMTP ++ E Y FR LL Sbjct: 899 VLLIEVNTVPGMTPSTVLIHQALAEEPPVYPHKFFRTLL 937 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 48/296 (16%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE +P+ + + DK + +++ G P+ Sbjct: 159 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECERAFDKHNASLELNAQGFLTVPNF 218 Query: 112 LVNR-----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 LV + F + + + ++KP + GSS+G++V + S Sbjct: 219 LVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRAGSSIGVVVAYGVNDAAQKAEEIISE 278 Query: 161 NHGDQLLIEQYVD-GIELTCGV--MGDAS------LDVTEIAVPKSD--------FYSYE 203 D+++IE +++ G E T V +G A+ L TE+ + S+ ++Y Sbjct: 279 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVVLLPTEVELQYSNSSDTDEDTIFNYR 338 Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255 KY S + P + P ++ +++ L + G +R D FL P++ Sbjct: 339 KKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRRFGLHDYARVDGWFLPSPVASLSSAE 398 Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 V + +IN+ GM S + A+ G+S +L +V+ A C R Sbjct: 399 NSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRTVVQHA-CSR 453 >gi|322705322|gb|EFY96909.1| hypothetical protein MAA_07722 [Metarhizium anisopliae ARSEF 23] Length = 361 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/319 (27%), Positives = 131/319 (41%), Gaps = 53/319 (16%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74 KA A+AL+ G V+ + S+ LA H DL FN+ G G + V A+LE Sbjct: 41 KAVAAALQGLGHDVTLVPGVSSLVEHLAAGQHKNWDLVFNMAQGFHGPARESHVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP--PYVI 130 IPYT S AL +K +K ++ GVP P +++ ++ + + P P + Sbjct: 101 FLIPYTFSDAATMALCQNKANTKIILEHHGVPNAPFMVIPSEHLSLLNHATLPPKYPLFV 160 Query: 131 KPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 KP GSS GI K + + L + + + G +L+E ++ G E T ++G S Sbjct: 161 KPATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSC 220 Query: 188 D----------------------VTEIAVPKSDFYS-YELKYS---SLNSTHVLPA-KIP 220 E A KS L+Y+ ++ HV A ++ Sbjct: 221 SRVIGIREHIWQTFPENGNGYQATQEFACWKSKLSEGCLLRYNDAHDMDDAHVKAACQVA 280 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEM 277 LD + A+GCR R D F D + LE+N G+ P S P Sbjct: 281 LDTWT-----------ALGCRDAGRVDIRFSSDDANGVPNVLEVNPIAGLLPGHSPLPAS 329 Query: 278 AAYAGYSFRELLLWMVEDA 296 A G SF LL ++E A Sbjct: 330 AEENGLSFEALLTAILESA 348 >gi|292493558|ref|YP_003528997.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4] gi|291582153|gb|ADE16610.1| D-alanine--D-alanine ligase domain protein [Nitrosococcus halophilus Nc4] Length = 350 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 57/322 (17%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 G S+E ++ K L+D ++ + +D ++ L PD N + Sbjct: 36 GRFSAEDIEAVDRVKEALGELQD--YRFTYLDNHSTLIANLTADPPDFVLNFCDTGYKNQ 93 Query: 66 GL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM 118 + A+LE+L IPY+ +G + DK + V + G+PV V +R Sbjct: 94 ARQELHIPALLEMLGIPYSGAGPTCLGMCYDKSLVRSVARTHGIPVPAETFVRGNDRHGA 153 Query: 119 DSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDL----LQSSSWNHGDQLLIEQY 171 SQ+ P +IKP + SLGI ++ +Q L ++ +W+ LLI+++ Sbjct: 154 VSQNF---PVLIKPNRADGSLGITKDSLVHDEQQARAYLNKLAMEFPNWD----LLIQEF 206 Query: 172 VDGIELTCGVMGDA----------SLDVTEIAV--------------PKSDFYSYELKYS 207 + G E + GV+G+ ++D +++ P+S +++ ++KY Sbjct: 207 LPGEEYSVGVLGNPASGFMILPILAVDYSKLVASRLPPILAYASKIDPQSPYWT-DIKYC 265 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 A + D+ + + + +GCR +R DF D ++ LE+N P Sbjct: 266 E--------ASLKEDLRQRLVDYCLFLFERLGCRDYARFDFRTD-AQGEIKLLEVNPNPA 316 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 MA +AGY + ELL Sbjct: 317 WCWDGKLNLMAGFAGYHYAELL 338 >gi|315636188|ref|ZP_07891442.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22] gi|315479549|gb|EFU70228.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22] Length = 347 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 20/237 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ N+ HG GEDG++ ++L+ IP+ A +S +K +K S V ++ Sbjct: 91 DVVLNLSHGGDGEDGILSSVLDFYSIPFIAPRTEACVVSSNKFLTKGYAKSVNV---NTL 147 Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 FT D + + S P ++KP+K GSS+G+ ++K + + L ++ D ++IE Sbjct: 148 DYKYFTKDDKIEVDSFPVILKPVKLGSSIGVAIVKSQEELQYAL--DVAFEFDDAIIIEP 205 Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHV-----LPAKIPLD 222 ++ G++ G + + I P K++F ++ KY + T L K+ + Sbjct: 206 FISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFLDFDKKYLDFSRTSKAKEVDLGEKLNNE 265 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I + +RL + + I R DF ++ +++ EIN PG +F + + Sbjct: 266 IKESFKRL----YNTLFEGSIIRCDFF--VINDEIYLNEINSIPGSMANYLFEDFQS 316 >gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] Length = 417 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 131/303 (43%), Gaps = 70/303 (23%) Query: 1 MAVLMGGISSEREVSLSSGKAC-------------------------ASAL------EDA 29 +A++ GG S ER +SL+S ++ SAL ED Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172 Query: 30 GFKVSQIDVD-RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 FK++ +S L HL+ D+ F LHG FGEDG +QA+LE +PY +G A Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----------SPPYVIKPLKG 135 + ++ DK + ++ G P LV +D L S V+KP + Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292 Query: 136 GSSLGIIVIKK-DQSIP-LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM----GDASLD 188 GSS+G+ V + D ++ + L + N D+++IE + +G +E T V+ G+ + Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGN--DRVVIEMFAEGALEFTALVLDVGFGNETRP 350 Query: 189 V----TEIAVPKSDF----------YSYELKY--SSLNSTHVLPAKIPLDIYKEVQRLAF 232 V TE+ + D+ ++Y KY + S H P I K R AF Sbjct: 351 VALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAAF 410 Query: 233 LAH 235 +++ Sbjct: 411 ISN 413 >gi|157736996|ref|YP_001489679.1| D-alanyl-alanine synthetase A [Arcobacter butzleri RM4018] gi|157698850|gb|ABV67010.1| D-alanine--D-alanine ligase [Arcobacter butzleri RM4018] Length = 347 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 20/237 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ N+ HG GEDG++ ++L+ IP+ A +S +K +K S V ++ Sbjct: 91 DVVLNLSHGGDGEDGILSSVLDFYSIPFIAPRTEACVVSSNKFLTKGYAKSVNV---NTL 147 Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 FT D + + S P ++KP+K GSS+G+ ++K + + L ++ D ++IE Sbjct: 148 DYKYFTKDDKIEVDSFPIILKPVKLGSSIGVAIVKSQEELQYAL--DVAFEFDDAIIIEP 205 Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHV-----LPAKIPLD 222 ++ G++ G + + I P K++F ++ KY + T L K+ + Sbjct: 206 FISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFLDFDKKYLDFSRTSKAKEVDLGEKLNNE 265 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I + +RL + + I R DF ++ +++ EIN PG +F + + Sbjct: 266 IKESFKRL----YNTLFEGSIIRCDFF--VINDEIYLNEINSIPGSMANYLFEDFQS 316 >gi|305432181|ref|ZP_07401345.1| D-alanine-D-alanine ligase [Campylobacter coli JV20] gi|304444724|gb|EFM37373.1| D-alanine-D-alanine ligase [Campylobacter coli JV20] Length = 346 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 9/234 (3%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 +L D N++HG GEDG + ++LE +I + + AS LS +K +K S GV Sbjct: 84 NLDLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKT 143 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R + P ++KP + GSS+GI + K ++ LD + + +L Sbjct: 144 LDYQML-RKSQKQDFTAHFPCILKPARLGSSIGISIAKNEKE--LDYAKDVGFEFDTDIL 200 Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223 +E + I+ G M + I P K +F ++E KY S + ++ A + ++ Sbjct: 201 VEDFKSNIKEYNLAGCMIKDEFIFSIIEEPKKKEFLNFEQKYLSFSGHNELIEADLSEEL 260 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +V+ EIN PG +F + Sbjct: 261 KQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312 >gi|308272543|emb|CBX29147.1| hypothetical protein N47_J01280 [uncultured Desulfobacterium sp.] Length = 326 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 30/302 (9%) Query: 20 KACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---AILE 73 +A + AL GF + D +VG+ L L P FN++ G L+ + L+ Sbjct: 28 EAVSKALRPLGFNPVPVKFDLNLEAVGIRLQKLNPAFVFNLVESVNGCGSLIHLAPSFLD 87 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 L I YT S A L+ +K+ K +++ G+ + ++ ++ S+ ++ Y+IK + Sbjct: 88 YLRIAYTGSKTQAMFLTSNKLLGKDYLAANGINTSKAYCLS--SLKSKTPVNGRYIIKSV 145 Query: 134 KGGSSLG-----IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-------- 180 +S+G ++ +K + L + S GD E+Y+DG E Sbjct: 146 WEHASIGMSQDSVVYVKSAPELIAKLERFRSSMIGD-FFCEEYIDGREFNIALLSGPEGV 204 Query: 181 -VMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLP-AKIPLDIYKEVQRLAFL 233 V+ A + T+ K Y K+ + LN+ D+ + ++ ++ Sbjct: 205 EVLPPAEILFTDYPPDKLKIVDYSAKWKTDSFEYLNTNRTFNFTSDDRDLIESLKIISRK 264 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G RG +R DF D S +++ LEIN P ++P S F + G F E++ ++ Sbjct: 265 CWDLFGLRGYARVDFRIDE-SGRLWVLEINANPCISPDSGFVAASKMIGLGFPEIIKRII 323 Query: 294 ED 295 ED Sbjct: 324 ED 325 >gi|317148223|ref|XP_001822597.2| hypothetical protein AOR_1_704134 [Aspergillus oryzae RIB40] Length = 375 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 124/297 (41%), Gaps = 52/297 (17%) Query: 48 HLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 H + DLAF++ +HG G + + +LE IP+ S AL +DK ++K ++ G Sbjct: 70 HKEWDLAFSISEGMHG-VGREAQIPGLLEAYHIPHVFSDAATLALCLDKGKTKMILEQFG 128 Query: 105 VPVCPSILVN--------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQS 149 +P P +V TM Q L S P IKP GSS GI K D Sbjct: 129 IPTAPFAVVPASWTKADCTLTQLLEKTMHGQKLSSFPLFIKPACEGSSKGIYPSSKVDNF 188 Query: 150 IPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEI--------- 192 L+ +LQ+ G +LIE ++ G E T ++G + T I Sbjct: 189 TELERGIQVLQTRF--PGASILIETFLSGQEYTVSIIGTGKRSRVIGTTHIDWEGLSRQK 246 Query: 193 ----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDI--------YKEVQRLAFLAHQAIGC 240 K + + + +N+ + A P + V+ LA A +A+ C Sbjct: 247 QQASVAEKGPANTSDGSFWDVNNKNGPDADEPERFLNSRDNPNVQAVEDLALQAWRALEC 306 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 + R D + +R + LEIN PG+ P SI A + G S +EL+ +++ A Sbjct: 307 CDVGRVDIRYGADNRP-YVLEINPLPGLRPDWSILARTAVHEGISHKELIGKVIDSA 362 >gi|58045586|gb|AAW65101.1| vancomycin resistance protein [Enterococcus gallinarum] Length = 148 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 E+PY + ASAL M+K Q+ + G+ P++L++R+ D + P Sbjct: 3 ELPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 62 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP + GSS GI + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 63 IKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 120 Query: 190 TEI-AVPKSD-FYSYELKYSSLNST 212 A+ D F+ +E KY +++T Sbjct: 121 GACDAISLVDGFFDFEEKYQLISAT 145 >gi|315638159|ref|ZP_07893341.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21] gi|315481695|gb|EFU72317.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21] Length = 347 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 51/321 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-------------KVSQIDVD-------- 39 +A+L GG S E E+S+ S L++ + K S ++ Sbjct: 4 LAILFGGNSYEHEISIVSAVVLKKVLDEEPYFIFCDEEREFYLIKASNLNAKTFSSKAYK 63 Query: 40 RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + L+L L+ N++HG GEDG + A+ E I + + A Sbjct: 64 KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISP--PYVIKPLKGGSSLGII 142 S LS +K +K S GV ++ FT+ Q P P ++KP++ GSS+GI Sbjct: 124 SVLSFNKELTKLYAKSVGVKT-----LDYFTLKKGLQTSFKPNFPCILKPVRLGSSIGIS 178 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDF 199 + ++ L+ + + D LL+E + I+ G M L + I P K +F Sbjct: 179 IANNEEE--LNYGKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIKDELIFSIIEEPKKKEF 236 Query: 200 YSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 +E KY S + + ++ A + ++ ++++ + + + R DF L +V+ Sbjct: 237 LDFEQKYLSFSGHSELIEADLSEELKEKLKEAFSKIYNPLFKGALIRCDFFI--LDNEVY 294 Query: 259 WLEINVQPGMTPVSIFPEMAA 279 EIN PG +F + + Sbjct: 295 LNEINPNPGSLANYLFKDFNS 315 >gi|58045582|gb|AAW65099.1| vancomycin resistance protein [Enterococcus gallinarum] Length = 146 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 E+PY + ASAL M+K Q+ + G+ P++L++R+ D + P Sbjct: 1 ELPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 60 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP + GSS GI + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 61 IKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 118 Query: 190 TEI-AVPKSD-FYSYELKYSSLNST 212 A+ D F+ +E KY +++T Sbjct: 119 GACDAISLVDGFFDFEEKYQLISAT 143 >gi|57242125|ref|ZP_00370065.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195] gi|57017317|gb|EAL54098.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195] Length = 346 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 19/233 (8%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + A+ E I + + AS LS +K +K S GV ++ Sbjct: 92 NLIHGRDGEDGKIAALFEFFNINFIGPRLEASVLSFNKELTKLYAKSVGVKT-----LDY 146 Query: 116 FTMDS--QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 FT+ Q P P ++KP++ GSS+GI + ++ L+ + + D LL+E + Sbjct: 147 FTLKKGLQTSFKPNFPCILKPVRLGSSIGISIANNEEE--LNYSKDVGFEFDDTLLVEDF 204 Query: 172 VDGIE---LTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKE 226 I+ L ++GD L + I P K +F +E KY S + + ++ A + ++ ++ Sbjct: 205 KKDIKEYNLAGCMIGD-ELIFSIIEEPKKKEFLDFEQKYLSFSGHSELIEADLSEELKEK 263 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ + + + R DF L +V+ EIN PG +F + + Sbjct: 264 LKESFSKIYNPLFKGALIRCDFFI--LDNEVYLNEINSNPGSLANYLFKDFNS 314 >gi|24215399|ref|NP_712880.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|45657184|ref|YP_001270.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196516|gb|AAN49898.1|AE011436_13 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|45600422|gb|AAS69907.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 374 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 44/266 (16%) Query: 50 KPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 K + F+++ G + + L+ A+ EL P+T S + +S+DK ++ S GVPV Sbjct: 72 KRPVIFHLMEGFCSRNRESLIPAVAELFGFPHTGSDSYSQNVSLDKNLTRIFAQSIGVPV 131 Query: 108 --------------------CPSILVNRFTMDSQHLI-----SPPYVIKPLKGGSSLGI- 141 C S + RF+ + + S P IKP GSSLGI Sbjct: 132 ASGFWIRSKDVLFKELLQLECNSEIKKRFSFSKGNELNLKNFSFPAFIKPAGEGSSLGIG 191 Query: 142 ---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----V 194 I+ ++ L+ L S + L+E+Y+ G E T V+G A+ + + Sbjct: 192 EKNIIYSFEE---LNTLLSEAPEIFFPYLLEEYLTGNEYTISVIGSATFGYKVSSAGRLI 248 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLF 250 + D ++ S ++P + D K+ +Q+ + L +++G G +R D+ Sbjct: 249 LREDLKVEDVYGEKTKSKSIMPETLVFDCPKDLEVIIQQQSVLFCESLGTSGPARLDWKL 308 Query: 251 DPLSRKVFWLEINVQPGMTPV-SIFP 275 D L F+LE+N+ PG++P S FP Sbjct: 309 DSLGNP-FFLEMNLTPGLSPFYSTFP 333 >gi|168699143|ref|ZP_02731420.1| D-ala D-ala ligase domain protein [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/309 (22%), Positives = 138/309 (44%), Gaps = 32/309 (10%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGED 65 +SE ++ + G A L AGF +++ ++ +L LK P FN+ G + Sbjct: 23 NSEHDIYDTVGDAY-KVLVAAGFVTTKLGINHDPQPLLDALKRDRPAAVFNLFEGIATQT 81 Query: 66 GL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 A+LE L +P+T A AL DK+R+K V+++ GVP ++V+ + + Sbjct: 82 STEVSAAALLEWLNVPFTGCPAAALALGRDKVRTKHVLAASGVPTPDYLIVDTLPVPTW- 140 Query: 123 LISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P ++KP +S+GI V+ + + + + + +G ++E+Y+ G EL Sbjct: 141 CHGWPAIVKPAYQDASVGIEQSSVVTSQEQLQAQVAHTLA-TYGPPAIVERYIKGRELHV 199 Query: 180 GVM-------GD-ASLDVTEIAVPKSD-----FYSYELKYSSLNSTH-----VLPAKIPL 221 V+ G+ +L TEIA K + Y++ K+ + + P +P Sbjct: 200 NVIEPFGATGGEPVALAPTEIAFQKDEPGRWAVYTFAAKWHEQSDEYKAASLKFPVDLPA 259 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + + ++ + + +GCR +R D D LE+N P + +++ + A Sbjct: 260 ADFARLAQIVQRSFRVVGCRDYARVDVRMD-AGGAFHVLEVNPNPYLNSITLVDGLKAR- 317 Query: 282 GYSFRELLL 290 G S+ ++ Sbjct: 318 GSSYERFVV 326 >gi|256752676|ref|ZP_05493527.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748438|gb|EEU61491.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 259 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128 A LE+ IPY SG+ ++ DK K +V+S G+P ++ N + S + P Sbjct: 14 AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 71 Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +KP+ G S GI I+ KD+ +P ++ + G LIE++++G E+T G++G Sbjct: 72 FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 129 Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + E+ +YE K N P ++P ++ ++++ A ++ + + Sbjct: 130 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 188 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R D + ++LE+N G+T S E + GY + +M + A R Sbjct: 189 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY-----MGYMAKAAGLTR 241 >gi|229662029|gb|ACQ84447.1| vancomycin resistance protein B [Enterococcus faecalis] Length = 160 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF VLHG GEDG +Q + L IPY I +SA+ MDK + + + G+ V Sbjct: 38 DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 97 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++++ ++ P +KP + GSS G V K + + L+ ++ + ++LIEQ Sbjct: 98 MIDKGDKPEAGALTYPVFVKPARLGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 155 Query: 172 VDGIE 176 + G E Sbjct: 156 ISGCE 160 >gi|88812924|ref|ZP_01128168.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231] gi|88789846|gb|EAR20969.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231] Length = 348 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 36/309 (11%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67 +E + ++ K +ALE GF + +D ++ L P LAFN+ F D Sbjct: 31 FGAEEQNAVEQLKTALAALE--GFTFTYLDDHTTLLDDLRQRPPSLAFNLCDVGFRNDTA 88 Query: 68 ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + A+LE+L I Y+ + + +L+ DK + V S G+PV + V+ + + L Sbjct: 89 RELNIPALLEILNISYSGADPVGMSLATDKSIVRVVARSLGIPVPNEMFVD---LGADPL 145 Query: 124 ISP---PYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGD----QLLIEQYVDG 174 + P P +IKP S GI + D + L W G+ + LI+ ++ G Sbjct: 146 VLPALYPALIKPNFSDGSFGITADCVAHDAAEAERYLH---WLAGELERPEALIQDFLTG 202 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE------LKYSSL---NSTHVLPAKIPLDIYK 225 E T G++G+AS T + + D+ + L Y+S +S + + Sbjct: 203 TEYTVGLIGNASQGFTYLPPLEVDYSRLDPELPPILSYASKADPDSPYWQKLRFRRARID 262 Query: 226 EVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 EV R L + +G R R DF LE+N P MA+Y Sbjct: 263 EVTRGRLYEYCTLLFKRLGLRDYGRFDFRAGADGEPRL-LEVNHNPAWAWDGKLSLMASY 321 Query: 281 AGYSFRELL 289 AGYS+ +LL Sbjct: 322 AGYSYSDLL 330 >gi|480501|pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp. (PCC 6716) (fragment) gi|49229|emb|CAA49884.1| unnamed protein product [Synechococcus sp.] Length = 218 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 14/138 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG +Q +LE+++ PY SG+ ASA+ MDK+ K + G+P + Sbjct: 82 DVWFPILHGPNGEDGTIQGLLEMMQRPYVGSGVAASAIGMDKILMKTFFGAVGLPQVQYV 141 Query: 112 LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++R + S + + P +KP GSS+GI K Q + L ++ Sbjct: 142 AISRSELWSDPCRYRQVCDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALETAAE 201 Query: 160 WNHGDQLLIEQYVDGIEL 177 + ++++E V EL Sbjct: 202 LDR--RIIVEAGVVAREL 217 >gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group] gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group] gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group] gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group] gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group] Length = 946 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 48/296 (16%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE +P+ + L+ DK + +++ G P+ Sbjct: 160 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKNCLLAFDKYNASLELNAQGFLTVPNF 219 Query: 112 LVNRFTMDSQHL-----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 LV + + L + V+KP GSS+G++V S Sbjct: 220 LVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGANDAAEKAEGIISE 279 Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTE----------------IAVPKSDFYSYE 203 D+++IE +++ G E T V+ + + +E I + + ++Y Sbjct: 280 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSNIDIQEDTIFNYR 339 Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255 KY + + P + P ++ +++ + + +G R +R D FL P++ Sbjct: 340 RKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSLPSAE 399 Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 V + +IN+ GM S + ++ G+S +L +V+ A C R Sbjct: 400 NTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRTVVQHA-CSR 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 134/342 (39%), Gaps = 87/342 (25%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ + + S+ + H+K A F +HG GEDG +Q++L +PYT G + Sbjct: 603 AGFDIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQI 662 Query: 86 ASALSMDKMRSKQVVS---SCGVPVCPSILVNRFTMD-------------SQHLISPPYV 129 AS MDK+ + VS S GV P L R T + L + Sbjct: 663 ASRTCMDKVATSLAVSHLASYGVHTIPKDL--RATEEILKSSPDDIWNDLKAKLQTETVC 720 Query: 130 IKPLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQL 166 +KP + G S G+ + +K Q +P + L S HG + L Sbjct: 721 VKPARDGCSTGVARLCCPKDLEVYANALERKLQRMPANCL---SRAHGVIEMPVSPPESL 777 Query: 167 LIEQYVDG-------------------------IELTCGVMGDA----SLDVTEIAVPKS 197 + E +++ +E+T GV+G SL+ + Sbjct: 778 IFEPFIETDEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESG 837 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPL 253 D S E K+ ++ P + + +Q+ + LA+ +G G SR D + Sbjct: 838 DILSLEEKFQGGTGINLTPPPSTIMSEEALQKCKSCIETLAN-TLGLEGFSRIDAFVNVQ 896 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRELL 289 + ++ +E+N PGMTP ++ A Y FR LL Sbjct: 897 NGEILLIEVNTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLL 938 >gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group] Length = 946 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 48/296 (16%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F V+HG FGEDG +Q +LE +P+ + L+ DK + +++ G P+ Sbjct: 160 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKNCLLAFDKYNASLELNAQGFLTVPNF 219 Query: 112 LVNRFTMDSQHL-----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 LV + + L + V+KP GSS+G++V S Sbjct: 220 LVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGANDAAEKAEGIISE 279 Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTE----------------IAVPKSDFYSYE 203 D+++IE +++ G E T V+ + + +E I + + ++Y Sbjct: 280 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSNIDIQEDTIFNYR 339 Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255 KY + + P + P ++ +++ + + +G R +R D FL P++ Sbjct: 340 RKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSLPSAE 399 Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 V + +IN+ GM S + ++ G+S +L +V+ A C R Sbjct: 400 NTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRTVVQHA-CSR 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/342 (23%), Positives = 134/342 (39%), Gaps = 87/342 (25%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ + + S+ + H+K A F +HG GEDG +Q++L +PYT G + Sbjct: 603 AGFDIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQI 662 Query: 86 ASALSMDKMRSKQVVS---SCGVPVCPSILVNRFTMD-------------SQHLISPPYV 129 AS MDK+ + VS S GV P L R T + L + Sbjct: 663 ASRTCMDKVATSLAVSHLASYGVHTIPKDL--RATEEILKSSPDDIWNDLKAKLQTETVC 720 Query: 130 IKPLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQL 166 +KP + G S G+ + +K Q +P + L + HG + L Sbjct: 721 VKPARDGCSTGVARLCCPKDLEVYANALERKLQRMPANCLSRA---HGVIEMPVSPPESL 777 Query: 167 LIEQYVDG-------------------------IELTCGVMGDA----SLDVTEIAVPKS 197 + E +++ +E+T GV+G SL+ + Sbjct: 778 IFEPFIETDEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESG 837 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPL 253 D S E K+ ++ P + + +Q+ + LA+ +G G SR D + Sbjct: 838 DILSLEEKFQGGTGINLTPPPSTIMSEEALQKCKSCIETLAN-TLGLEGFSRIDAFVNVQ 896 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRELL 289 + ++ +E+N PGMTP ++ A Y FR LL Sbjct: 897 NGEILLIEVNTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLL 938 >gi|167038556|ref|YP_001666134.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116951|ref|YP_004187110.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857390|gb|ABY95798.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930042|gb|ADV80727.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 325 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 18/224 (8%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128 A LE+ IPY SG+ ++ DK K +V+S G+P ++ N + S + P Sbjct: 80 AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 137 Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +KP+ G S GI I+ KD+ +P ++ + G LIE++++G E+T G++G Sbjct: 138 FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 195 Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + E+ +YE K N P ++P ++ ++++ A ++ + + Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 254 Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGY 283 +R D + LS+ ++LE+N G+T S E + GY Sbjct: 255 DFARIDMI---LSKDNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295 >gi|289524161|ref|ZP_06441015.1| putative D-ala D-ala ligase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502817|gb|EFD23981.1| putative D-ala D-ala ligase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 344 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 142/309 (45%), Gaps = 34/309 (11%) Query: 15 SLSSGKACASALEDAGFK-----VSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDG 66 +L+ A AL G K V++ D+ RS ++ +K PD FN+ G F +D Sbjct: 20 TLTVRDMVAKALASVGHKTYVLGVTKKDL-RSFDVLENKIKRFWPDCIFNLFEG-FSDDS 77 Query: 67 ----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 L LE L IP+T +G A S+DK+ +K++++ VP + + + D + Sbjct: 78 KKEVLFATFLESLNIPFTGNGSAALQASLDKLMAKKLLTKKNVPAPKGLCLESTSFDLEG 137 Query: 123 LISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L P + IKP S+GI +V K Q + ++ G +++E++++G E Sbjct: 138 LPCPAF-IKPRFEDGSVGIDDSSLVTSKSQLKEAVARKILTFPAG--IIVEEFLEGREFN 194 Query: 179 CGVMGDASLDVTEIAV------PKS-DFYSYELKYSSLNSTHVL----PAKIPLDIYKEV 227 G++G +V I++ P++ F Y K+ + + + + P +P ++ + Sbjct: 195 VGLIGLPPYEVAGISMIDYEDYPEALPFLDYGAKWDTKSPGYRIAPENPKFLPREMKDSL 254 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 R+A A A+ C+G R D +++ +++N P + S +G + Sbjct: 255 IRMAKRAGIALSCKGYFRVDMR--ERDGEIYVIDVNPNPDLNVESGLANQCRRSGLPYEA 312 Query: 288 LLLWMVEDA 296 L+ ++++ A Sbjct: 313 LISYIIDTA 321 >gi|167040420|ref|YP_001663405.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|300913706|ref|ZP_07131023.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561] gi|307723279|ref|YP_003903030.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513] gi|166854660|gb|ABY93069.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|300890391|gb|EFK85536.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561] gi|307580340|gb|ADN53739.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513] Length = 325 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 14/222 (6%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128 A LE+ IPY SG+ ++ DK K +V+S G+P ++ N + S + P Sbjct: 80 AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 137 Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +KP+ G S GI I+ KD+ +P ++ + G LIE++++G E+T G++G Sbjct: 138 FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 195 Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + E+ +YE K N P ++P ++ ++++ A ++ + + Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 254 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 +R D + ++LE+N G+T S E + GY Sbjct: 255 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295 >gi|315453894|ref|YP_004074164.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC 49179] gi|315132946|emb|CBY83574.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC 49179] Length = 344 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 9/217 (4%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG + ++LE +P+ + A +SM+K +K GV V P + ++ Sbjct: 93 NLVHGGDGEDGKLASMLEFFNLPFIGPRVEACTVSMNKYFTKMFAKERGVKVLPYVFLDS 152 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P + KP GSS+GI VI + + + L + ++ Q ++E + G+ Sbjct: 153 HDNSALENLDYPLIAKPNHLGSSIGISVIHEPKDVAYGLDEVFEFD--SQAIVEPFKAGV 210 Query: 176 ELT--CGVMG-DASLDVTEIAVP-KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRL 230 + G MG D + I P K + +E KY T + A I + ++Q Sbjct: 211 KEYNLAGCMGQDGEFIFSMIEEPTKKELLGFEEKYLDFGRTQTISKANISPHLELQMQNA 270 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + R DF + +++ EIN PG Sbjct: 271 FKKLYDPFFIGALIRCDFFV--IDNEIYLNEINPIPG 305 >gi|297620263|ref|YP_003708400.1| hypothetical protein wcw_0017 [Waddlia chondrophila WSU 86-1044] gi|297375564|gb|ADI37394.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 642 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 25/282 (8%) Query: 30 GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGIL 85 F+ S D +++ + P N+ + D ++ A++E+L+IPYT +G Sbjct: 331 NFQFSCFDDHKNLIRKFSQNPPPFVMNLCDEGWNNDPFMELHPTALMEMLKIPYTGAGPE 390 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---- 141 ++ +K + + S V V I ++ + P +IKP G SS+GI Sbjct: 391 CLSICYNKSTVRAIAQSMDVHVPSEIWIDPSNHSAAIPSIFPALIKPAYGDSSIGITQNA 450 Query: 142 IVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEI------A 193 +V ++ + D L++ N +LI++++DG E + GV+G+ SL+V I Sbjct: 451 VVYSAEELVTYFDNLKAQMPNI--PILIQEFLDGREFSVGVIGNGVSLEVLPILEVDYSG 508 Query: 194 VPKS--DFYSYELKY--SSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSD 247 +P++ YE K+ S TH+ + LD + +++ + Q + CR +R D Sbjct: 509 LPENLPKILGYESKWHPESPYCTHIRYHQAHLDESLARDLIDTSINLFQRLKCRDYARFD 568 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 F D LE N PG MA +AG + ELL Sbjct: 569 FRMDSQGEAKL-LEANPNPGWCWDGKMALMAEFAGIQYHELL 609 >gi|57167797|ref|ZP_00366937.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228] gi|57020919|gb|EAL57583.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228] Length = 346 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 9/234 (3%) Query: 48 HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 +L D N++HG GEDG + ++LE +I + + AS LS +K +K S GV Sbjct: 84 NLNLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKT 143 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ R + P ++KP + GSS+GI + K ++ LD + + +L Sbjct: 144 LDYQML-RKSQKQDFTAHFPCILKPARLGSSIGISIAKNEKE--LDYAKDVGFEFDTDIL 200 Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223 +E + I+ G M + I P K +F ++ KY S + ++ A + ++ Sbjct: 201 VEDFKSNIKEYNLAGCMIKDEFIFSIIEEPRKKEFLDFKQKYLSFSGHNELIEADLSEEL 260 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++++ + + + R DF L +V+ EIN PG +F + Sbjct: 261 KQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312 >gi|307352683|ref|YP_003893734.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571] gi|307155916|gb|ADN35296.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571] Length = 635 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 31/266 (11%) Query: 50 KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K D FN+ F D V A LE+L IPYT A DK + + + Sbjct: 358 KADFIFNLCDEGFLNDPRKELHVPAALEILSIPYTGGNPQCLAYCYDKSLVRGIAKELDI 417 Query: 106 PVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGII--VIKKDQSIPLDL---LQS 157 PV + ++N DS + P P ++KP G SS GI + +D S D L+S Sbjct: 418 PVPRAFVIN--PEDSSFIEFPIHFPVIVKPNFGDSSFGITQNSVCRDISELQDAILRLKS 475 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKYS 207 S + G +L+E+++ G +++ G++G+ + V + D+ S YE K+ Sbjct: 476 FSGDCG-TVLVEEFLTGGDISVGIIGNLPDKYEVLPVIEEDYSSLPRGYPKICGYEAKWD 534 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 S + IP D+ +E +R + +GCR +R D+ D LE+N Sbjct: 535 P-ESPYAGITSIPADLSEEARRFLVASCLKLFGRLGCRDYARFDWRIDSNGTPRL-LEVN 592 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289 PG +MA A ++ E+L Sbjct: 593 PNPGWCWDGHLAKMAGIAEITYAEML 618 >gi|134081480|emb|CAK46493.1| unnamed protein product [Aspergillus niger] Length = 335 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 137/305 (44%), Gaps = 51/305 (16%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFG--EDGLVQAILELLEI 77 A+AL++ G +V + S+ LAH + DLAFN G G +G V A+LE +I Sbjct: 41 AAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLEAYQI 100 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG 136 P+T S L +DK R+K V + + + R + S+ L+S P +KPL G Sbjct: 101 PFTFSDAATMTLCLDKGRTK-------VSLDEILSMIRMSRHSETLLSQYPLFVKPLAEG 153 Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL--LIEQYVDGIELTCGVMGDASLDVTEI 192 SS GI K +SI D++ S + L L+E+Y+ G E T G++G D + Sbjct: 154 SSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLPGREFTVGILGTGE-DAWVV 212 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY----KEVQ------------RLAFLAHQ 236 V + Y + S +L P D + E++ + A A Sbjct: 213 GVDEI--------YGAAKSRRIL---TPTDDWAGEADEIKIGWDDQEADLACQTALRAWT 261 Query: 237 AIGCRGISRSDFLFD----PLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLW 291 + CR R D D P++ V ++IN G+ P S P +A + S+ EL+ + Sbjct: 262 VLRCRDGGRIDIRMDHSGSPVAH-VMEIQINPLAGLLPHWSQLPMIAEHNNVSYNELIEY 320 Query: 292 MVEDA 296 +++ A Sbjct: 321 ILKSA 325 >gi|300088096|ref|YP_003758618.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527829|gb|ADJ26297.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 330 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 40/268 (14%) Query: 55 FNVLHGNFGEDGLVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 FN+ G G A+ LE +P+T + AL++DK + V+ G+ Sbjct: 69 FNLFEGFAGRPETEAAVARALENTGLPFTGCPASSLALTLDKPATHLVLGYAGLATPRFQ 128 Query: 112 LVN-----RFTMDSQHLISPP-----YVIKP---LKGGSSLGIIVIKKDQSIPLDLLQSS 158 L++ F +D ++ PP + + P G L I + + + P Sbjct: 129 LLDPADTADFDLDFPCIVKPPADDASHALSPESVAAGREELAIALNRIAKRYP------- 181 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI------AVPKSDFYSYELKYSSL 209 L+E++++G E V+G+ S L V+EI P+ ++ + S Sbjct: 182 ----DSPALVEEFLNGREFNVTVLGNNSPRLLAVSEIIYTLPTGCPRLLTFAAKWSPDSA 237 Query: 210 NSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 H PA + + E++ A A +A GCRG +R DF + R V LE+N P Sbjct: 238 YYRHTAVRCPAVLDNSLAAELEHAALTAFRATGCRGYARMDFRLNAAGRPVI-LEVNANP 296 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++P + A AG ++REL+ +V+ Sbjct: 297 DLSPEAGVARQAEAAGMTYRELIDAIVK 324 >gi|224419173|ref|ZP_03657179.1| D-alanyl-alanine synthetase A [Helicobacter canadensis MIT 98-5491] gi|253828106|ref|ZP_04870991.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491] gi|313142679|ref|ZP_07804872.1| ligase [Helicobacter canadensis MIT 98-5491] gi|253511512|gb|EES90171.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491] gi|313131710|gb|EFR49327.1| ligase [Helicobacter canadensis MIT 98-5491] Length = 345 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 13/218 (5%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++HG GEDG V ++L+ I Y A LS DK +K + CGV +V++ Sbjct: 92 NLIHGADGEDGRVASLLDFYGINYIGPRNPACVLSFDKELTKMLAKECGVLSLDYQMVHK 151 Query: 116 FTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 DS ++ P+ ++KP + GSS+GI V+ +++ L+ ++ + D+ +IE +V Sbjct: 152 ---DSIPKVTLPFPLIVKPARLGSSIGISVVYEEKE--LEYAIQEAFEYDDKAIIEPFVS 206 Query: 174 GIEL--TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQR 229 GI+ G + + I P K +F +E KY + T A+I + + +Q Sbjct: 207 GIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEKKYLDFSRTESAKEAEISESLKQTLQE 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + + + R DF + + EIN PG Sbjct: 267 NFTKIYGNLFDGALIRCDFFVK--ENQCYLNEINPIPG 302 >gi|21360658|gb|AAM49643.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360660|gb|AAM49644.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360662|gb|AAM49645.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360664|gb|AAM49646.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360666|gb|AAM49647.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360668|gb|AAM49648.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360670|gb|AAM49649.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360672|gb|AAM49650.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|21360674|gb|AAM49651.1| D-alanine:D-alanine ligase [Enterococcus faecium] Length = 155 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 15/157 (9%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKG 135 L SA +MDK+ +K ++ + GVP P +L N++ + + + P +KP Sbjct: 1 LTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPANM 60 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192 GSS+GI K + L ++++ + + ++EQ ++ E+ V+G+ + T E+ Sbjct: 61 GSSVGIT--KAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV 118 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 V FY YE KY + +PA++P ++Y++ Q Sbjct: 119 -VKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQE 154 >gi|268323538|emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon] Length = 720 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%) Query: 53 LAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + FN+ +G GE A+LE+L IPY SG +L++DK+ +K ++ + P+ Sbjct: 73 MVFNMAYGIQGESRYTHLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQSIS-TPN 131 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQLL 167 V + + P ++KP S GI ++ + DL + + Q L Sbjct: 132 FWVYSSGDEDMSDVQYPVIVKPKMEAVSYGIKIVDNED----DLRAAVKFVVTEFIQQAL 187 Query: 168 IEQYVDGIELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDI 223 +EQ++ G E G++G+ + V EI + D + PAKI + Sbjct: 188 VEQFIRGREFCVGLLGNGDPEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKL 247 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 E+ RL+ A +A+ R +R D D + ++ LEIN + + A AGY Sbjct: 248 AAEMVRLSKDAFRALELRDFARVDIRMDE-AENIYLLEINSMASLGLTGSYVYAANVAGY 306 Query: 284 SFRELLLWMVEDASC 298 + L+ ++E A+ Sbjct: 307 DYARLVNKILEVAAV 321 >gi|328956078|ref|YP_004373411.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] gi|328456402|gb|AEB07596.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] Length = 375 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 23/188 (12%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVM 182 P +KP GGS++G+ + +++ ++ + S++ D+++I+++++G+EL+ CG Sbjct: 190 PVAVKPACGGSAMGVSRVGCQEALGEAIMGALSFD--DKVIIQEWLEGVELSVAICCGQD 247 Query: 183 GDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-----------AKIPLDIYKEVQRL 230 G A SL EIA PK F++ + + P + D+ + R Sbjct: 248 GAARSLTPVEIA-PKETFFTTAARLDPSAVDYFAPVREESLVANGHGRSADDLDSLIART 306 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A A+GCR ++R D + LS V + +++ V PGM+ S+ P A +G+ ++ Sbjct: 307 ALDAFCALGCRDLARVDMM---LSDGVAYVIDVKVAPGMSENSLLPMAVAASGFDLGDIF 363 Query: 290 LWMVEDAS 297 +V A+ Sbjct: 364 DGLVRRAA 371 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 45/82 (54%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ERE SL SG A LE V +D + L +PD+A +HG Sbjct: 3 VAVIMGGTSLEREFSLKSGHRIARELEAKDHIVLPLDATSELTCALRSGRPDVALIAVHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHS 82 GEDG +Q +LE L IPY S Sbjct: 63 LGGEDGAIQGLLEFLRIPYVGS 84 >gi|254411813|ref|ZP_05025589.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes PCC 7420] gi|196181535|gb|EDX76523.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes PCC 7420] Length = 340 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 29/248 (11%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 + + +LL IPY + AL+ K ++K +V++ GV V L+++ D+ +L+ PP Sbjct: 100 RGLFDLLNIPYVGNKAELMALTAHKAKAKAIVAAAGVKVPYGELLHQ--GDTPNLM-PPV 156 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187 VIKP +SLG+ +++ L Q+ +++ D++L+E Y++ G E+ CG Sbjct: 157 VIKPANSDNSLGVTLVRNMADYDEALTQA--FHYADEVLVEDYIELGREVRCGTFVKNG- 213 Query: 188 DVTEIAVPKSDF-----------YSYELKYSSL--------NSTHVLPAKIPLDIYKEVQ 228 T I +P ++ YS +LK + N+ I +VQ Sbjct: 214 --TLIGLPLEEYSVNTQNHPIRNYSDKLKKTETGELTCAAKNNEKAWIVDTTDPITTKVQ 271 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A H+A+GCR S DF DP + F LE + +P S+ MA AG S EL Sbjct: 272 DVAKQCHKALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVVACMAKAAGISVDEL 330 Query: 289 LLWMVEDA 296 L + +A Sbjct: 331 LKTAIAEA 338 >gi|256829554|ref|YP_003158282.1| D-alanine--D-alanine ligase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578730|gb|ACU89866.1| D-alanine--D-alanine ligase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 331 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 107/255 (41%), Gaps = 11/255 (4%) Query: 52 DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D+ FN G G + V A+L+ +IPYT SG ALS+ K + V+ + GVP Sbjct: 66 DMVFNFAEGMRGLAREAQVPALLDAWDIPYTFSGPEVLALSLHKGWTNAVLRAHGVPTAD 125 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLL 167 +VN + P +KP+ GSS G+ + KD+ D+ L Sbjct: 126 FRIVNSVEEVDAIDLPFPLFVKPVAEGSSKGVSDKSLVKDRWELRDICAHVLKTFHQPAL 185 Query: 168 IEQYVDGIELTCGVMGDAS----LDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +E ++ G E T G++G L V E+ A + D +Y L D Sbjct: 186 VETFLPGREFTVGILGSGPQCRVLGVMEVLATARGDACAYTYANKQEWRERALYELAGDD 245 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYA 281 + +A A QA+GC R D D + F +E+N G+ P S P + Sbjct: 246 RAAQAAEVARAAWQALGCLDAGRIDVRLDAQGQPRF-IEVNPLAGLNPESSDLPILCGKI 304 Query: 282 GYSFRELLLWMVEDA 296 G + EL+ +++ A Sbjct: 305 GLGYDELIASIMDSA 319 >gi|27382562|ref|NP_774091.1| hypothetical protein blr7451 [Bradyrhizobium japonicum USDA 110] gi|27355734|dbj|BAC52716.1| blr7451 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 52/303 (17%) Query: 24 SALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVL---HGNFGEDGLVQAILELLEI 77 S L AG +V + D + V + KP + F +L H N D + + LEL+++ Sbjct: 43 STLRAAGHEVRALGAQDEIKPVREAIEEFKPHVVFTLLEEFHNNVAYDQHIASYLELMKV 102 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKG 135 PYT L+ K SK +V + P+ V R + ++ P ++K L Sbjct: 103 PYTGCNPRGLILARGKDLSKTLVHHRRI-AAPAFAVFPMRRKVKRPTRLALPLIVKSLNM 161 Query: 136 GSSLGI---IVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELTCGVMGDASLDV 189 S GI ++ D+ L + ++ H + EQ+++G EL GV+G+ L V Sbjct: 162 DGSFGISQASIVDTDEK----LAERVAFIHERVESAAIAEQFIEGRELYVGVLGNNRLRV 217 Query: 190 TEIAVPKSDFYSYELKYSSL---NSTHVLPAKIPLDI-YKE------------------- 226 I +ELK+ S+ S H+ K D Y+E Sbjct: 218 LPI---------WELKFGSMGGRRSRHIATEKAKHDTDYQEKVGIVDGPAKDLAPEVTAR 268 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +QR A ++A+G G +R DF +++E N P + F A +AG + Sbjct: 269 IQRAAKRIYRALGLDGYARIDFRL-AADGTPYFIEANPNPEIAKSQEFATAAQHAGLKYP 327 Query: 287 ELL 289 +LL Sbjct: 328 DLL 330 >gi|325111080|ref|YP_004272148.1| D-alanine--D-alanine ligase domain protein [Planctomyces brasiliensis DSM 5305] gi|324971348|gb|ADY62126.1| D-alanine--D-alanine ligase domain protein [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 32/288 (11%) Query: 9 SSEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 +SER+V L +A ++A+ G + +D+ R + L +PD FN++ G Sbjct: 22 ASERDV-LVQAEAVSAAVSRMGHRPRSLACTLDLQR-LQRKLIERRPDCVFNLVESLDGS 79 Query: 65 DGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 D L V +LE L+IPYT S ++ S DK+ +K ++ + +P P DS Sbjct: 80 DRLMPLVPLLLEQLQIPYTGSSAVSIVQSSDKLSAKHLLRTASLPT-PGWSDGEDVPDS- 137 Query: 122 HLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L+ P ++K + +S G+ I S ++L G E+++DG E Sbjct: 138 -LLHRPVIVKAIHEHASFGLDDSSIQTFHSASQLREVLDDRLAATGQPHFAEEFIDGREF 196 Query: 178 TCG---------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPL-----D 222 V+ A +D + + Y K+ ++ +V P + L D Sbjct: 197 NVSLLAGSRGPVVLPPAEIDFSFLPSESLRIVGYAAKWEEDSAEYVGTPRRFDLPEQDRD 256 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + E+Q L G +G +R DF D R+ + LEIN P + P Sbjct: 257 LVGEIQELCRRCWNVFGLKGYARVDFRVD-TQRRPWILEINGNPCLAP 303 >gi|156146892|gb|ABU53458.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 6/130 (4%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P KP GSS+GI K + L ++ + ++L+EQ V E+ G++G Sbjct: 10 LTYPVFTKPSNMGSSVGIS--KAENQAELRQSLELAFKYDSRVLVEQGVVAREIEVGLLG 67 Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + T E+ V FY YE KY T +PA+IP ++ +++ A LA +AIG Sbjct: 68 NYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMAIPAEIPAEVAATMRQNAELAFRAIGG 126 Query: 241 RGISRSDFLF 250 +G+SR DF + Sbjct: 127 KGLSRCDFFY 136 >gi|322382668|ref|ZP_08056532.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153366|gb|EFX45789.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 130 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 C SA+ K+ + V R+ G + + D F+VLHG GEDG +Q + EL IPY Sbjct: 8 CRSAVLSPDKKMHGLLVMRNKGYQIQRI--DAVFSVLHGKSGEDGAIQGLFELSGIPYVG 65 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 + +SA+ MDK + V + G +++N + ++ P +KP + GSS G+ Sbjct: 66 CDVQSSAVCMDKSLTYIVAKNAGFGTPEFLILNHGDKPDSNTLTYPVFVKPARSGSSFGV 125 >gi|284046365|ref|YP_003396705.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684] gi|283950586|gb|ADB53330.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684] Length = 439 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 26/211 (12%) Query: 12 REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 R V L G A +E + S++ DR++ + + N +HG GEDG + Sbjct: 72 RAVELRLGAADGPFVEPS---TSRLRGDRALAI-------SVVLNAIHGTGGEDGALLGA 121 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------- 123 LEL +P+ G+ A A+ MDK +K V+ G+ V P + R + Sbjct: 122 LELSGVPHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVAD 181 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181 + P V+KP GSS+G+ + L + + Q ++E + G EL C V Sbjct: 182 EVPLPCVVKPATLGSSIGVARCADPAEVEEALELAFELDR--QAVVEPFATGATELNCAV 239 Query: 182 MG--DASLDVTEIAVP--KSDFYSYELKYSS 208 +G L V+E+ P ++E KY S Sbjct: 240 LGRPGGELRVSEVERPLGGEAGLTFEDKYLS 270 >gi|294084785|ref|YP_003551543.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664358|gb|ADE39459.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 375 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 138/312 (44%), Gaps = 33/312 (10%) Query: 7 GISSEREVSLS-SGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFN-VLHGNFG 63 G +++ V+++ + K S L KVS ++ L LA KPDL F+ V + F Sbjct: 70 GRKNQKNVAITINAKLIHSILSKKYSKVSITEISTLECLTKLAKRKPDLVFSGVKYFEFE 129 Query: 64 EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120 E+ + + LEL I Y S A K +K +V G+ +++N + ++D+ Sbjct: 130 ENQIWLNDFLELNHIRYIGSNHAALDREHHKGFAKSIVKQAGILTADYVIINTNKVSVDN 189 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--------LIEQYV 172 I P +KP++GG S+GI D S+ D Q + DQ+ L+E Y+ Sbjct: 190 NMNIPYPVFVKPVRGGDSIGI----DDLSLVFDRKQLDA--KVDQICNVLNCDALVESYL 243 Query: 173 DGIELTCGVMGDASLDV-----TEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDI 223 G E + G++ D ++ EI PK++ +E+K + + K + Sbjct: 244 TGREFSVGILEDERTNLLTAMPIEIIAPKNERGHRVLDHEIKRLDQETVRKVKNKT---L 300 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 +K++ + A +A+G R R D F +E N+ PG++ + A Sbjct: 301 HKKLSEVGKSAFKALGGRSFGRIDIRLCAKGLPHF-VEANLMPGLSKGYFYRSCALNLNM 359 Query: 284 SFRELLLWMVED 295 ++ +++L + + Sbjct: 360 TYDDMILLLCSN 371 >gi|94968579|ref|YP_590627.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94550629|gb|ABF40553.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 344 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 28/297 (9%) Query: 24 SALEDAGFKVSQ--IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIP 78 +ALE G + S +D + LA DL FN+ G+D V A L+L+ IP Sbjct: 46 AALEKLGHEPSYHILDGHQQSLFALAKSGTDLIFNLTESYDGDDTKEMHVTAFLDLVNIP 105 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 YT +G L+ DK +K++ + G+ R +D H +S P ++KP S Sbjct: 106 YTGTGPHGHMLAQDKSLAKKMFAFHGIQSPYFATAYRGIVDHAHDVSFPLIVKPTSEDGS 165 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIEQYVDGIELTCGVMGD---------AS 186 +GI S+ +L++ ++ + LIE+Y++G E+ ++G Sbjct: 166 IGIDAAAVVSSVK-ELMERVAYIQAEFDSPALIEEYIEGREIYSAILGSYETANALPLVE 224 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQR----LAFLAHQAIGCR 241 LD++++ S ++K+ + + + D+ +E + A A++A+ R Sbjct: 225 LDLSKLPKGMPKIASQDVKFEKDTEAYKKTKSAVAEDLDEETETKLTATAIKAYRAVKLR 284 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D LS K V+ +E N P ++ F A +G S+ +++ +V+ A Sbjct: 285 DYGRIDMR---LSTKGEVYVIEANPNPWLSSGQEFAMAAKKSGLSYTQMIGEIVDHA 338 >gi|20806600|ref|NP_621771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Thermoanaerobacter tengcongensis MB4] gi|20515044|gb|AAM23375.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Thermoanaerobacter tengcongensis MB4] Length = 332 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 14/220 (6%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPY 128 LEL IPY SGI +A DK K +V++ G+P P +V + HL P + Sbjct: 82 LELFNIPYVGSGIDLAA--TDKRMRKDIVAAHGLP-TPKYVVAYSANEIPSVDHLRFPLF 138 Query: 129 VIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 V KP+ G S GI I D+S ++ + G LIE++++G E+T G++G + Sbjct: 139 V-KPIMGRGSAGIDEENIVYDKSRLPKVVSKITEKIGQPALIEEFIEGREVTVGIIGYRN 197 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 L + EI +YE K N P ++P +I K ++ A + + R Sbjct: 198 PIVLPLLEIGYNNVKTNTYEHKMFD-NEIIKCPMEVPEEIEKRIKDTALRIFKVLNARDY 256 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 +R D + ++LE+N G+T E + GY Sbjct: 257 ARIDMILGK-DNVPYFLELNTYAGLTTAVERGEKHVHHGY 295 >gi|113476541|ref|YP_722602.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110167589|gb|ABG52129.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 361 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 39/285 (13%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L+D ++ QIDV V+ H+ L F ED +L +P S Sbjct: 79 LQDMILQLPQIDV------VVPHMFCFLGMTSFRA-FFED--------MLNLPLVGSPSY 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +AL+ +K +++ VV + GV V + + R + PP+V+KP +SLG+ ++ Sbjct: 124 CTALATNKAQTRNVVLASGVQVAKAQQLGR---GETLTMKPPFVVKPTSEDNSLGLTLVW 180 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPK 196 + I L + ++LL+E Y+ G EL V+ S VTE + Sbjct: 181 DESQIEAAL--DKGFELDNKLLVEDYIPGRELRVAVVERESKLSVLPMIEYLVTEEHPIR 238 Query: 197 SDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y L+ + PA + ++++++ A AH A+GCR S DF Sbjct: 239 TVHDKYVLQSDGTPGKQPEKPIAQPICPANVTPELFEKLVNAAKNAHIALGCRDYSLYDF 298 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE--LLLW 291 + + ++LE + G +S+ M G S + L LW Sbjct: 299 RVHAETNEPYFLEAGLFWGFGKISMISRMLQADGQSLEDVSLELW 343 >gi|156146036|gb|ABU53079.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146044|gb|ABU53083.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V DFY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406] gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406] Length = 897 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 21/131 (16%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D AF LHG +GEDG +Q +L+ IPY+ SGIL SA+ ++K K++V+ + Sbjct: 112 DFAFLALHGPYGEDGAIQGMLDWNNIPYSGSGILPSAIGINKYIQKKLVAQASFNGPNYV 171 Query: 112 LVNRFT----MDSQHLISP-------PYVIKPLKGGSSLGIIVIKK----------DQSI 150 + T D++ L++ P+V+K GSS+GI VI + ++S Sbjct: 172 TYKKSTWLKGADTKALLAHFESSVGFPFVVKAPSQGSSIGITVISERNEEKLKQALNRSF 231 Query: 151 PLDLLQSSSWN 161 L + ++ WN Sbjct: 232 FLQEITAADWN 242 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 52/284 (18%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D F LHG GEDG +Q LE ++PY SGI +S ++++K + +++ G+ V Sbjct: 590 DGVFIALHGRPGEDGSMQKELEKYQLPYNGSGIQSSQITINKFETNRILREHGISVANHR 649 Query: 112 LVNRFT-MDS-QHLISP-------PYVIKPLKGGSSLGIIVIK-KDQ------------- 148 +V + +D+ + L+S P + KP G S + IK +D+ Sbjct: 650 MVYKQEWLDAGEKLLSEIESGFIYPIIAKPSDDGCSSAVKKIKNRDELRAYTRLMFGEEA 709 Query: 149 ------SIPLDLLQSSSWNHGDQLLIEQYVDG------IELTCGVM------GDASLDVT 190 S L L + + D LIE V +E+T G+M G+ ++ Sbjct: 710 IQGSVSSSVLGLKYNEEFPQKDYFLIEDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIF 769 Query: 191 E--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD------IYKEVQRLAFLAHQAIGCRG 242 E ++ D S E K+ + ++ PA+ + + EV+ + + +G Sbjct: 770 EPSESLATGDVLSLEEKFLAGEGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQG 829 Query: 243 ISRSDFL---FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 +R D F+ + +E+N PGMTP + A GY Sbjct: 830 YARIDAFVRVFENNRSETIIIEVNSLPGMTPATCIFHQTAINGY 873 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++ G E +C V+ D D IA+P + DF+ Y KY S + P IP + Sbjct: 312 FIKGQEFSCIVIQDE--DGNPIALPPTGIVKGNDFFDYRSKYLPGMSRKITPIDIPGEQV 369 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + ++ + + +R D P +VF + N GM P S F AA G + Sbjct: 370 ELIRSECCRLYSTLQFNVYARIDGFISP-EGEVFLNDPNTTSGMMPSSFFFHQAAEIGLN 428 Query: 285 FRELLLWMV 293 + L +++ Sbjct: 429 PSQFLTYII 437 >gi|113476540|ref|YP_722601.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110167588|gb|ABG52128.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 361 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 47/289 (16%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L+D ++ QIDV V+ H+ L F ED +L +P S Sbjct: 79 LQDMILQLPQIDV------VVPHMFCFLGMTSFRA-FFED--------MLNLPLVGSPSY 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +AL+ +K +++ VVS+ GV V + + R + PP+V+KP +SLG+ ++ Sbjct: 124 CTALATNKAQTRNVVSASGVQVAKAQQLRR---GETLTMKPPFVVKPTSEDNSLGVTLVW 180 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDFY-SYE 203 + I L + D+LL+E Y+ G EL V+ L V +P ++ + E Sbjct: 181 DESQIEAAL--DKGFELEDKLLVEDYIPGRELRVAVVERKGELQV----LPMIEYLVTEE 234 Query: 204 LKYSSLNSTHVL-------------------PAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 ++N VL PA + ++++++ A AH A+GCR S Sbjct: 235 HPIRTVNDKLVLQSDGTPEKQPEKPIAKPICPANVTPELFEKLANAAKSAHIALGCRDYS 294 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE--LLLW 291 DF + + ++LE + +++ M G S + L LW Sbjct: 295 LYDFRVHTNTNEPYFLEAGLFWTFGKIAMISRMLQADGESLEDVALELW 343 >gi|758371|gb|AAA87680.1| putative D-alanine:D-alanine ligase [Weissella confusa] Length = 202 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 97/194 (50%), Gaps = 15/194 (7%) Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDS--QHL 123 + LL+ PY +G ASA+S DK +K++++ GV +L+ +T + + L Sbjct: 1 LFRLLQKPYIGAGTAASAMSFDKDLTKRILNQAGVRNTKYVLLTDQDYQNYTYEGLVKEL 60 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 + +K K GSS+GI + + + +++ ++L+E ++ E+ ++ Sbjct: 61 GTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDY--KVLVEAALNKPREVFISIL 118 Query: 183 GDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237 G+ + I +P+ D +Y Y K+ + LP ++ D+ KE+ +A A++A Sbjct: 119 GNEQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALTAYKA 178 Query: 238 IGCRGISRSDFLFD 251 +G G++R DF+ D Sbjct: 179 LGLVGLTRMDFMID 192 >gi|193214834|ref|YP_001996033.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088311|gb|ACF13586.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110] Length = 656 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/291 (20%), Positives = 125/291 (42%), Gaps = 26/291 (8%) Query: 31 FKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGI 84 +K++ ++ ++ LA +KP D FN+ F D + ++LE++ YT SG Sbjct: 347 YKITYLNNHNTLIHDLARIKPKVDFVFNLCDEGFNNDPRKELHIPSLLEIMGFRYTGSGP 406 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 A DK + + G+ V + + + + P + KP G SS GI Sbjct: 407 QCLAYCYDKSLVRGIAKEMGIAVPEAFFIRPEETSFELPFNFPVIAKPNFGDSSFGITTR 466 Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 +I +L+ + S + +L+E+++ G +L+ G++G+A + + + D+ Sbjct: 467 SVSYTIE-ELVNAISEIRSKIGYEKPILVEEFLTGKDLSLGIIGNAPESYMVLPIIEEDY 525 Query: 200 Y----------SYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 YE K+ S + +PA+I + K ++ + + + CR R Sbjct: 526 SGLPESLPKICGYEAKWLPDSPYATVKSIPAQISEETKKLLEEWCVMLFERLECRDYCRF 585 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 D+ D LE+N PG +M+A++ + +++ ++ +A Sbjct: 586 DWRLDANGNPKL-LEVNPNPGWCWDGHLAKMSAFSEIDYPKMIETILAEAE 635 >gi|301167561|emb|CBW27144.1| putative D-alanine--D-alanine ligase [Bacteriovorax marinus SJ] Length = 336 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 26/289 (8%) Query: 24 SALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE---DGLVQAILELLEI 77 AL + G KV V + L+ + KP + FN+L GE D V + LELL + Sbjct: 37 KALNNLGHKVEICGVISDLKLIKNAIDKFKPTVIFNLLEEFDGEVLFDQNVVSYLELLRV 96 Query: 78 PYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 PYT L+ DK +K+++ P NR S+HL P ++K L Sbjct: 97 PYTGCNPRGLMLARDKALAKKILLFHRIKTPHFQVFPKNRKVKTSKHL-KYPLIVKCLTE 155 Query: 136 GSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------ 186 +SL I ++ ++ + + ++ + G ++E++++G E GVMG+ Sbjct: 156 EASLAIAKASIVYNEEKLK-ERVKYINQKIGVDAIVEEFIEGREFYVGVMGNYKTQTLPV 214 Query: 187 --LDVTEIAVPKSDFYS----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 L + P+ + YS + KY A + ++ +++ + ++ + Sbjct: 215 WELKFENVEKPEKELYSNRAKWNNKYRDRKGIKTEAATLSPELELKIKNICKKVYKHLNL 274 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G +R D +P + +V+ +E+N P + A ++ ++ +L+ Sbjct: 275 NGYARVDLRMNP-AGEVYVIEVNPNPNIAREDELASSALHSKVNYEQLI 322 >gi|68535998|ref|YP_250703.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] gi|68263597|emb|CAI37085.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] Length = 193 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 G AH+ D+ F VLHG GEDG +Q + EL IPY +G+LASA MDK +K + Sbjct: 116 GRTYAHV--DVIFPVLHGQNGEDGTIQGLFELAGIPYVGNGVLASAAGMDKEYTKCLAKQ 173 Query: 103 CGVP 106 GVP Sbjct: 174 AGVP 177 >gi|183585294|gb|ACC63961.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|183585298|gb|ACC63963.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQPGMT 269 + LE+N PGMT Sbjct: 116 NIPYVLEVNTLPGMT 130 >gi|183585290|gb|ACC63959.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--RD 115 Query: 255 RKVFWLEINVQPGMT 269 + LE+N PGMT Sbjct: 116 NVPYVLEVNTLPGMT 130 >gi|170702583|ref|ZP_02893457.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] gi|170132517|gb|EDT00971.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] Length = 357 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 113/251 (45%), Gaps = 31/251 (12%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + N+LHGN+GEDG +Q ++ IP + +L ++L+M K + V+ P Sbjct: 85 RQTFVLNLLHGNYGEDGCIQGAASMMSIPGSFGPVLPASLAMSKYHMSRYVAKA----HP 140 Query: 110 SILVNRFTMDSQHLISPPY------------VIKPLKGGSSLGI--IVIKKDQSIPLDLL 155 S + R + S I + V+KP G+SL ++++ + Sbjct: 141 SARMPRTLILSDGDIGIAHKRITDAFPEGDVVMKPNSLGASLFTQRFTMRREAVDAVRSN 200 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDF-YSYELKYSSLN 210 ++ + L+++Y+ G E + G + +L V I F ++ + ++ + Sbjct: 201 LAAILEYDRHALVQEYIAGDEYSVGCFQEHDVVTALPVVRIETADGFFGHAQKHRHGKVR 260 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268 T V ++ + ++RL+ + +G R + R DF+ ++R + +LE N PG+ Sbjct: 261 ETVVFEDD---EVTRAIKRLSVDIFRDVGFRNMCRFDFI---VTRNGDIVFLEANPIPGL 314 Query: 269 TPVSIFPEMAA 279 SIFP+M A Sbjct: 315 MKNSIFPKMLA 325 >gi|297543611|ref|YP_003675913.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841386|gb|ADH59902.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 325 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 18/224 (8%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISP 126 A LE+ IPY SG+ ++ DK K +V+ G+P P +V + + + HL P Sbjct: 80 AFLEVFNIPYVGSGL--DLVATDKRMRKDIVAFHGLP-TPKYVVAKNSQEIPPVGHLRFP 136 Query: 127 PYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 +V KP+ G S GI IV KD+ +P +++ + G LIE++++G E+T G++ Sbjct: 137 LFV-KPISGRGSAGIDEENIVYDKDK-LP-QVVRKITEKIGQAALIEEFIEGKEVTVGII 193 Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G L + E+ +YE K N P ++ ++ ++++ A ++ + Sbjct: 194 GYKHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLN 252 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + +R D + ++LE+N G+T S E + GY Sbjct: 253 AKDFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295 >gi|307266588|ref|ZP_07548119.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918385|gb|EFN48628.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 250 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 19/239 (7%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128 A LE+ IPY SG+ ++ DK K +V+S G+P ++ N + S + P Sbjct: 5 AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPL 62 Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 KP+ G S GI I+ KD+ +P ++ + G LIE++++G E+T G++G Sbjct: 63 FAKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGY 120 Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + E+ +YE K N P ++ ++ ++++ A ++ + + Sbjct: 121 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLNAK 179 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R D + ++LE+N G+T S E + GY + +M + A R Sbjct: 180 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY-----MGYMAKAAGLTR 232 >gi|183585292|gb|ACC63960.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVKDNI 117 Query: 255 RKVFWLEINVQPGMT 269 V LE+N PGMT Sbjct: 118 PNV--LEVNTLPGMT 130 >gi|215404957|ref|ZP_03417138.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 134 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY + KY + +PAK+ + + +++LA A AI CRG++R DF + Sbjct: 31 FYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN 90 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P M +G + LL M+E A Sbjct: 91 --EINTMPGFTTISMYPRMWEASGVDYPTLLATMIETA 126 >gi|215404958|ref|ZP_03417139.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289746781|ref|ZP_06506159.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687309|gb|EFD54797.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 157 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 40/55 (72%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 D+ F VLHG +GEDG +Q +LEL +PY +G+LASA+ MDK +K+++++ P Sbjct: 96 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAAIDFP 150 >gi|289746780|ref|ZP_06506158.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687308|gb|EFD54796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 133 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY + KY + +PAK+ + + +++LA A AI CRG++R DF + Sbjct: 30 FYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN 89 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P M +G + LL M+E A Sbjct: 90 --EINTMPGFTTISMYPRMWEASGVDYPTLLATMIETA 125 >gi|156146038|gb|ABU53080.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V DFY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|289577322|ref|YP_003475949.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9] gi|289527035|gb|ADD01387.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9] Length = 325 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 18/224 (8%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISP 126 A LE+ IPY SG+ ++ DK K +V+ G+P P +V + + + HL P Sbjct: 80 AFLEVFNIPYVGSGL--DLVATDKRMRKDIVAFHGLP-TPKYVVAKNSQEIPPVGHLRFP 136 Query: 127 PYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 +V KP+ G S GI IV KD+ +P ++ + G LIE++++G E+T G++ Sbjct: 137 LFV-KPISGRGSAGIDEENIVYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGII 193 Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G L + E+ +YE K N P ++ ++ ++++ A ++ + Sbjct: 194 GYKHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLN 252 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + +R D + ++LE+N G+T S E + GY Sbjct: 253 AKDFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295 >gi|3983141|gb|AAC83823.1| putative D-alanine:D-alanine ligase [Paenibacillus popilliae] Length = 158 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 29/164 (17%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 PY +G+LAS++ MDK K V + G+P C R D Q + P Sbjct: 6 FPYVGAGVLASSVGMDKAIMKHVFAHAGLPQCKYEHFLRREWDQNQAEILDRVQTELGYP 65 Query: 128 YVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 +KP GSS+GI + Q+I L L + ++++E++VD E+ V+G Sbjct: 66 CFVKPANLGSSVGISKARNAAELKQAIELAL------QYDRKIIVEEFVDAREVEVSVLG 119 Query: 184 DASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLD 222 + D + ++P ++FY Y+ KY S +PA PLD Sbjct: 120 N---DEPQASIPGEIISSNEFYDYKAKYIDGKSQIAIPA--PLD 158 >gi|156146042|gb|ABU53082.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146046|gb|ABU53084.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146052|gb|ABU53087.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V DFY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146022|gb|ABU53072.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V DFY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|326391834|ref|ZP_08213349.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992119|gb|EGD50596.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] Length = 325 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 18/224 (8%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128 A LE+ IPY SG+ ++ DK K +V+S G+P ++ N + S + P Sbjct: 80 AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPL 137 Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 KP+ G S GI I+ KD+ +P ++ + G LIE++++G E+T G++G Sbjct: 138 FAKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGY 195 Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + E+ +YE K N P ++ ++ ++++ A ++ + + Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLNAK 254 Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGY 283 +R D + LS+ ++LE+N G+T S E + GY Sbjct: 255 DFARIDMI---LSKDNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295 >gi|290794219|gb|ADD64431.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 160 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 36 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVAAREIEVGILGNTN 93 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 94 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 153 Query: 245 RSDFLF 250 R DF Sbjct: 154 RCDFFL 159 >gi|3821389|emb|CAA13261.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821421|emb|CAA13277.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711419|gb|ABR02136.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711475|gb|ABR02164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711477|gb|ABR02165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY N T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|183585300|gb|ACC63964.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|183585302|gb|ACC63965.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + ++ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQPGMT 269 + LE+N PGMT Sbjct: 116 NIPYVLEVNTLPGMT 130 >gi|183585296|gb|ACC63962.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ + + +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLAESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQPGMT 269 + LE+N PGMT Sbjct: 116 NIPYVLEVNTLPGMT 130 >gi|156146812|gb|ABU53418.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTFPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISEDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|255940354|ref|XP_002560946.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585569|emb|CAP93280.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255] Length = 363 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 91/332 (27%), Positives = 135/332 (40%), Gaps = 47/332 (14%) Query: 2 AVLMGGISSEREVSLSSG---KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAF 55 A L G S E+ +L A +ALE G V+ + ++ +LA H DL F Sbjct: 20 AYLSHGYSEEQCAALPHRGEIDAVMAALERLGHHVTLVSGIEALVQLLAAGKHNGWDLVF 79 Query: 56 NVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112 N+ G G + V A+LE ++PYT S AL +K +K ++ +P P S++ Sbjct: 80 NMAQGFHGSARESQVPALLEAYQVPYTFSDAATMALCQNKQVTKTILDRHMIPNAPFSVI 139 Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----H 162 V F L P +KP+ GSS GI K + P D L+ + W Sbjct: 140 PMLDVVADFPKGFAALPPYPLFVKPVTEGSSKGIDGFNKVKE-PAD-LKPAVWELVRKFP 197 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--------VTEIAVPKSDFYSYE----LKYSSLN 210 G +L+E ++ G E T ++G + + S+ Y L ++S + Sbjct: 198 GQDILVESFLSGREFTVSILGTGPHSRVIGIREHIWRTSPEHSNTNGYHSDGSLDFASRD 257 Query: 211 STHVLPAKIPL--DIY-------KEVQRLAFLAHQAIGCRGISRSDFLFD---PLSRKVF 258 S K+ L D + K ++A + CR R D FD P S Sbjct: 258 SKSSKGEKMLLYNDSHDMDEPQIKATCQVALQTWKVFNCRDGGRVDIRFDSDEPGSTPNV 317 Query: 259 WLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 LE+N G+ P S P A G SF ELL Sbjct: 318 -LEVNPIAGLLPGHSPLPATAKMNGLSFEELL 348 >gi|6434093|emb|CAB60643.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634603|emb|CAB64492.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|48525842|gb|AAT45131.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|148711701|gb|ABR02277.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711745|gb|ABR02299.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711747|gb|ABR02300.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711751|gb|ABR02302.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|183585304|gb|ACC63966.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|183585306|gb|ACC63967.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 131 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + ++ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--RD 115 Query: 255 RKVFWLEINVQPGMT 269 + LE+N PGMT Sbjct: 116 NIPYVLEVNTLPGMT 130 >gi|1857218|gb|AAB49635.1| vancomycin resistance protein [Enterococcus casseliflavus] Length = 126 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 10/124 (8%) Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------ 126 EL+++PY G+ ASAL M+K Q + GV P+IL+ + Q I Sbjct: 1 ELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTN-QANQQDQIEAFIQTHG 59 Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ Sbjct: 60 FPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGND 117 Query: 186 SLDV 189 SL V Sbjct: 118 SLTV 121 >gi|156146866|gb|ABU53445.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146056|gb|ABU53089.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711707|gb|ABR02280.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711753|gb|ABR02303.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KPENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY N T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146054|gb|ABU53088.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI + + + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQSL--KLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146000|gb|ABU53061.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146826|gb|ABU53425.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178 + ++ P KP GSS+GI + + +LLQ+ ++ + ++L+EQ V+ E+ Sbjct: 7 EEKLTYPVFTKPSNMGSSVGISKSENQE----ELLQALELAFQYDSRVLVEQGVNAREIE 62 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G++G+ + T E+ V FY Y+ KY T +PA+I D+ ++R A A Sbjct: 63 VGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPARISEDVVAVMRRNAETAF 121 Query: 236 QAIGCRGISRSDFLF 250 +AIG G+SR DF + Sbjct: 122 RAIGGLGLSRCDFFY 136 >gi|156146810|gb|ABU53417.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146814|gb|ABU53419.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EKKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|48525852|gb|AAT45136.1| D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|255029325|ref|ZP_05301276.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28] Length = 170 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 12/146 (8%) Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSS 208 + ++ + ++++EQ V E+ GV+G+ D +VP + FY Y+ KY Sbjct: 11 TEAFLYDRRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQD 67 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 N+ ++P ++ +I ++++ A A + G+ R+DF ++F E+N PG Sbjct: 68 NNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGF 126 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP S++P + G + L+ +V+ Sbjct: 127 TPYSMYPLLWQETGLPYGALIERLVD 152 >gi|149192572|ref|ZP_01870736.1| D-alanylalanine synthetase [Vibrio shilonii AK1] gi|148833591|gb|EDL50664.1| D-alanylalanine synthetase [Vibrio shilonii AK1] Length = 117 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 191 EIAVPKSDFYSYELKYSS--LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI P FY+Y+ KYSS ++T V + + + + A + R +SR DF Sbjct: 9 EIIAPDGAFYTYDEKYSSDSHSTTTVEASDLTDEQLNIIHTSAVKVFTQMKLRHLSRIDF 68 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PGMTP+S+FP+M ++G F E L +E + Sbjct: 69 FLTE-DNKIYLNEVNTFPGMTPISMFPKMVEHSGLEFSEFLSDCIESS 115 >gi|148711777|gb|ABR02315.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711813|gb|ABR02333.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711817|gb|ABR02335.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ VD E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVDAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|190894037|ref|YP_001984331.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] gi|190699698|gb|ACE93781.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 397 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S+ER SL + L++ V ++ + L+ A L+ D +V++G Sbjct: 215 LVLLAGGSSTERAASLETKDVLLPHLQNLCRSVEFVEPNDVEQLLRAVLQCDFVLSVVYG 274 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 GEDG +Q L++L +PY+ L SA+ M+K ++ G PV LV Sbjct: 275 AGGEDGTMQGFLDILRVPYSGPSTLPSAIGMNKDIFVSLLRDWGYPVPRGRLVAALGDPR 334 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 + ++ Q S V+KP+ GSS+GI ++ Sbjct: 335 SWPLELQQ--SQVLVLKPIGEGSSIGIKML 362 >gi|148711807|gb|ABR02330.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ VD E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVDAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|49183263|ref|YP_026515.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str. Sterne] gi|227812912|ref|YP_002812921.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684] gi|254686586|ref|ZP_05150445.1| putative D-ala D-ala ligase [Bacillus anthracis str. CNEVA-9066] gi|254734936|ref|ZP_05192648.1| putative D-ala D-ala ligase [Bacillus anthracis str. Western North America USA6153] gi|254739721|ref|ZP_05197414.1| putative D-ala D-ala ligase [Bacillus anthracis str. Kruger B] gi|254754908|ref|ZP_05206943.1| putative D-ala D-ala ligase [Bacillus anthracis str. Vollum] gi|254756951|ref|ZP_05208979.1| putative D-ala D-ala ligase [Bacillus anthracis str. Australia 94] gi|49177190|gb|AAT52566.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str. Sterne] gi|227007613|gb|ACP17356.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684] Length = 158 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 95 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGL 148 >gi|65317671|ref|ZP_00390630.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] Length = 161 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 D+ F +LHG GEDG VQ +LEL+ IPY +G+LASA MDK+ K + + G+ Sbjct: 98 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGL 151 >gi|156146872|gb|ABU53448.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711767|gb|ABR02310.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ ++ T E+ V FY Y+ KY T +PAKI D+ +++ A +A +A Sbjct: 65 LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEIAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146894|gb|ABU53459.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGIGLSRCDFFY 136 >gi|58045588|gb|AAW65102.1| vancomycin resistance protein [Enterococcus gallinarum] Length = 128 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 8/118 (6%) Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 PY + ASAL M+K Q+ + G+ P++L++R+ D + P IK Sbjct: 1 PYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIK 60 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 P + GSS GI + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 61 PNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 116 >gi|156146884|gb|ABU53454.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVNAREIEVGLLGNYD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY YE KY T +PAKI ++ ++R A A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKISDNVVAVMRRNAEAAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|156146824|gb|ABU53424.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146864|gb|ABU53444.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PA+I D+ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPARISDDVVAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|58045584|gb|AAW65100.1| vancomycin resistance protein [Enterococcus gallinarum] Length = 135 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 10/134 (7%) Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 1 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 60 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + A+ D Sbjct: 61 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 118 Query: 199 FYSYELKYSSLNST 212 F+ +E KY +++T Sbjct: 119 FFDFEEKYQLISAT 132 >gi|159029118|emb|CAO90107.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 363 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 23/245 (9%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +A+ +LL+IPY + AL+ DK ++K VVS+ GV V +++R S +S P Sbjct: 100 RALFDLLKIPYVGNSAELMALAADKAKAKAVVSAAGVTVPAGKVLHRGDCLS---VSRPS 156 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS- 186 +IKP +SLG+ ++ ++ D ++++ + D++L+E++++ G E+ CGV+ A Sbjct: 157 IIKPNHSDNSLGLSLVT--ETTDGDAAFATAFEYADEVLVEEFIELGREVRCGVIVQAGE 214 Query: 187 ---LDVTEIAV-PKSD---FYSYELKYS---SLNSTHVLPAKI----PLD-IYKEVQRLA 231 L + E AV P++ Y+ +LK S SL+ K P D + + V +A Sbjct: 215 LVCLPLEEYAVNPETHPIRTYADKLKQSQDGSLDCAAKEKTKAWIVDPRDPVTQRVWAIA 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 H A+GCR S DF DP + F LE + S+ MA AG S +L Sbjct: 275 KQCHVALGCRHYSLFDFRIDPHGQPWF-LEAGLYCSFAQKSVISMMAQAAGISLTDLFQN 333 Query: 292 MVEDA 296 MV+ A Sbjct: 334 MVQMA 338 >gi|156146006|gb|ABU53064.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRILVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ ++ T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|124358352|gb|ABN05627.1| vancomycin resistance protein A [Enterococcus faecium] Length = 131 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-A 185 P +KP + GSS G V K + + LD S+ + ++LIEQ V G E+ C V+G+ A Sbjct: 8 PVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSA 65 Query: 186 SLDVTEIAVPKSDF------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +L V E+ + + E + S N+ +PA + + +Q A ++A+G Sbjct: 66 ALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALG 125 Query: 240 CRGISR 245 CRG++R Sbjct: 126 CRGLAR 131 >gi|148711613|gb|ABR02233.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI + + + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGISKSENQEELRQSL--KLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++R + A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNSETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766005|emb|CAB16964.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766011|emb|CAB16967.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766081|emb|CAB17002.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766129|emb|CAB17026.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821403|emb|CAA13268.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G++ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNSD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|156146904|gb|ABU53464.1| D-alanylalanine synthetase [Streptococcus viridans] Length = 147 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVSAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY YE KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKISDDVVAIMRKNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6634607|emb|CAB64494.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ ++ T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766007|emb|CAB16965.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766109|emb|CAB17016.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821395|emb|CAA13264.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711443|gb|ABR02148.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711447|gb|ABR02150.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711463|gb|ABR02158.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711479|gb|ABR02166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY Y+ KY T +PAKI D+ +++ A +A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|148711765|gb|ABR02309.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711761|gb|ABR02307.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711823|gb|ABR02338.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ ++ T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKINDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821391|emb|CAA13262.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711429|gb|ABR02141.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711441|gb|ABR02147.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711445|gb|ABR02149.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|224383912|gb|ACN42752.1| Ddl [Oenococcus oeni] Length = 165 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 45 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 104 Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGI 141 I++ N+ DS + +K GSS+G+ Sbjct: 105 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGV 146 >gi|224383914|gb|ACN42753.1| Ddl [Oenococcus oeni] gi|224383916|gb|ACN42754.1| Ddl [Oenococcus oeni] Length = 165 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 45 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 104 Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGI 141 I++ N+ DS + +K GSS+G+ Sbjct: 105 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGV 146 >gi|2766019|emb|CAB16971.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766021|emb|CAB16972.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766023|emb|CAB16973.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766025|emb|CAB16974.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766027|emb|CAB16975.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766029|emb|CAB16976.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766031|emb|CAB16977.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766033|emb|CAB16978.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766035|emb|CAB16979.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766037|emb|CAB16980.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766039|emb|CAB16981.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766043|emb|CAB16983.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766045|emb|CAB16984.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766047|emb|CAB16985.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766049|emb|CAB16986.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766051|emb|CAB16987.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766053|emb|CAB16988.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766085|emb|CAB17004.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766089|emb|CAB17006.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766091|emb|CAB17007.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766093|emb|CAB17008.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766095|emb|CAB17009.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766097|emb|CAB17010.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766099|emb|CAB17011.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766101|emb|CAB17012.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766103|emb|CAB17013.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766105|emb|CAB17014.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766107|emb|CAB17015.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766111|emb|CAB17017.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766117|emb|CAB17020.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766121|emb|CAB17022.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766123|emb|CAB17023.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766125|emb|CAB17024.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821356|emb|CAA13244.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821366|emb|CAA13250.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821383|emb|CAA13258.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821411|emb|CAA13272.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821413|emb|CAA13273.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711409|gb|ABR02131.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711433|gb|ABR02143.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711453|gb|ABR02153.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711473|gb|ABR02163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711499|gb|ABR02176.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711505|gb|ABR02179.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711509|gb|ABR02181.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711517|gb|ABR02185.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711519|gb|ABR02186.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711521|gb|ABR02187.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711525|gb|ABR02189.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711527|gb|ABR02190.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711549|gb|ABR02201.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711559|gb|ABR02206.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711561|gb|ABR02207.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711563|gb|ABR02208.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711565|gb|ABR02209.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711567|gb|ABR02210.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711569|gb|ABR02211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711571|gb|ABR02212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711573|gb|ABR02213.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711575|gb|ABR02214.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711577|gb|ABR02215.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711589|gb|ABR02221.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711593|gb|ABR02223.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711595|gb|ABR02224.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711597|gb|ABR02225.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711601|gb|ABR02227.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711607|gb|ABR02230.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711611|gb|ABR02232.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711619|gb|ABR02236.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711627|gb|ABR02240.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711629|gb|ABR02241.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711633|gb|ABR02243.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711635|gb|ABR02244.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711637|gb|ABR02245.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711639|gb|ABR02246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711645|gb|ABR02249.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711653|gb|ABR02253.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711655|gb|ABR02254.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711657|gb|ABR02255.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711673|gb|ABR02263.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711675|gb|ABR02264.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711681|gb|ABR02267.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711683|gb|ABR02268.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711691|gb|ABR02272.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711695|gb|ABR02274.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711697|gb|ABR02275.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711699|gb|ABR02276.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711705|gb|ABR02279.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711709|gb|ABR02281.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711711|gb|ABR02282.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711713|gb|ABR02283.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711715|gb|ABR02284.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711725|gb|ABR02289.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711731|gb|ABR02292.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711733|gb|ABR02293.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711735|gb|ABR02294.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711737|gb|ABR02295.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711739|gb|ABR02296.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711755|gb|ABR02304.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711763|gb|ABR02308.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711769|gb|ABR02311.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711789|gb|ABR02321.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711793|gb|ABR02323.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711799|gb|ABR02326.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711803|gb|ABR02328.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711821|gb|ABR02337.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711825|gb|ABR02339.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711827|gb|ABR02340.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711829|gb|ABR02341.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711831|gb|ABR02342.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711833|gb|ABR02343.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|156146828|gb|ABU53426.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|57790302|gb|AAW56078.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 126 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ S Sbjct: 8 PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 65 Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L V A+ D F+ +E KY +++ +PA +P I +V+ A L ++++G +G++ Sbjct: 66 LTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLA 125 Query: 245 R 245 R Sbjct: 126 R 126 >gi|256378297|ref|YP_003101957.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] gi|255922600|gb|ACU38111.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 339 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 26/247 (10%) Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +A+L+ L +PY + AL DK ++ VV++ GVPV +V T + PP+ Sbjct: 98 RALLDALGVPYPGNPPDVMALGADKAMTRAVVAAAGVPVPEGRVV---TSADPCPLPPPF 154 Query: 129 VIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA 185 V+KP+ +S G+ ++ + D LD + S + L+E+YV G E+ CGV+ + Sbjct: 155 VVKPVDADNSDGLTLVHDRADYHAALDAAFACSPRR--RALVERYVPPGREVRCGVLVRS 212 Query: 186 S----LDVTEIAV-----PKSDFY------SYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 L + E + P++D S L + + ++ P + VQ Sbjct: 213 GVPTPLPLEEYPLPSGVRPRADKLADDGGGSLSLVAKADGRSWIVDHDDP--VTAAVQEQ 270 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A H+A+GCR S DF DP R F LE + P S+ MA AG EL Sbjct: 271 ALRCHEALGCRDYSLFDFRIDPEGRPWF-LEAGLYCSFAPTSVITTMAGAAGIGLAELFA 329 Query: 291 WMVEDAS 297 V A+ Sbjct: 330 EAVTTAA 336 >gi|156146026|gb|ABU53074.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISNDVIAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156145996|gb|ABU53059.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146024|gb|ABU53073.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVSVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6434097|emb|CAB60645.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634619|emb|CAB64500.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRILVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821419|emb|CAA13276.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|261349379|ref|ZP_05974796.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374] gi|288861743|gb|EFC94041.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374] Length = 367 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +IP + + A L+ DK+++K+ + GVP ++ + +S+ I P V+K +G Sbjct: 90 DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKIEFPVVLKQGQG 149 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 I V + LD ++ + D L E++++G E++ V+G VP Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198 Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 S Y E LN P + VQR A+ + +G GI DF+F Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258 Query: 253 LSRKVFWLEINVQPGMT 269 ++++ +E+N +P T Sbjct: 259 DEQQLYAIEVNTRPNGT 275 >gi|148711703|gb|ABR02278.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|156146032|gb|ABU53077.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146848|gb|ABU53436.1| D-alanylalanine synthetase [Streptococcus viridans] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYGVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIALMRKNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711511|gb|ABR02182.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711513|gb|ABR02183.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711515|gb|ABR02184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711529|gb|ABR02191.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711533|gb|ABR02193.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711535|gb|ABR02194.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711537|gb|ABR02195.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711539|gb|ABR02196.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711541|gb|ABR02197.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711543|gb|ABR02198.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711545|gb|ABR02199.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711547|gb|ABR02200.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711557|gb|ABR02205.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711579|gb|ABR02216.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711581|gb|ABR02217.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711583|gb|ABR02218.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711585|gb|ABR02219.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRILVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821379|emb|CAA13256.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|6634554|emb|CAB64456.1| D-alanine--D-alanine ligase [Streptococcus oralis] gi|6634615|emb|CAB64498.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|38520892|emb|CAE75669.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|40204832|emb|CAF02017.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|148711667|gb|ABR02260.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711743|gb|ABR02298.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711809|gb|ABR02331.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|156146012|gb|ABU53067.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146060|gb|ABU53091.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6434091|emb|CAB60642.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634601|emb|CAB64491.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI + + + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGISKAENQEELRQAL--KLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711693|gb|ABR02273.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711727|gb|ABR02290.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711729|gb|ABR02291.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711749|gb|ABR02301.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711775|gb|ABR02314.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711779|gb|ABR02316.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711787|gb|ABR02320.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711791|gb|ABR02322.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6434087|emb|CAB60640.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634597|emb|CAB64489.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146868|gb|ABU53446.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|167522361|ref|XP_001745518.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775867|gb|EDQ89489.1| predicted protein [Monosiga brevicollis MX1] Length = 806 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/292 (20%), Positives = 117/292 (40%), Gaps = 45/292 (15%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97 L H+ P + FN+ F ++ A++++L + Y+ + A+ DK Sbjct: 495 TALAREHIPP-VIFNLCDEGFNNHARLELHVPAMMDILGLHYSGAAPACLAICYDKGLVN 553 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIK 145 + GVPV + ++ T Q LI P +KP++G S+GI Sbjct: 554 ALARRLGVPVPAEVFISHETDLRQLLIDEAAATEFLQDLDFPVFVKPVRGDGSVGITADS 613 Query: 146 KDQSIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----- 195 ++ ++ ++++ +++++Y+ G E++ GV+G+ +D +P Sbjct: 614 ICNNVEELISYVEAVRANPTVLSKDVVVQEYLQGEEVSVGVIGNPEMDAVGDVIPDSALF 673 Query: 196 ----KSDF----------YSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 K+DF SYE K+ PA++ + +++ + L Sbjct: 674 LPILKADFSQLPADLPPILSYESKWDPESPYWTDVQYKPAEVSAEHRRQLHQQCALLFNR 733 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 R R DF F ++ LE+N PG MA AG ++ +++ Sbjct: 734 FELRDFGRFDFRFSKRTQTFKLLEVNPNPGWCHDGKAALMAQMAGLNYADMI 785 >gi|3821401|emb|CAA13267.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVTVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3947752|emb|CAA13581.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|48525846|gb|AAT45133.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|48525850|gb|AAT45135.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|48525856|gb|AAT45138.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|156146804|gb|ABU53414.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146818|gb|ABU53421.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146882|gb|ABU53453.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146886|gb|ABU53455.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146896|gb|ABU53460.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146900|gb|ABU53462.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146838|gb|ABU53431.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146840|gb|ABU53432.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146844|gb|ABU53434.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146846|gb|ABU53435.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146850|gb|ABU53437.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146852|gb|ABU53438.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146854|gb|ABU53439.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146856|gb|ABU53440.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146876|gb|ABU53450.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766009|emb|CAB16966.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766013|emb|CAB16968.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766119|emb|CAB17021.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766127|emb|CAB17025.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821368|emb|CAA13251.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821375|emb|CAA13254.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821387|emb|CAA13260.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821415|emb|CAA13274.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711425|gb|ABR02139.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711427|gb|ABR02140.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711467|gb|ABR02160.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711469|gb|ABR02161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711495|gb|ABR02174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711649|gb|ABR02251.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711659|gb|ABR02256.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711661|gb|ABR02257.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711663|gb|ABR02258.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711665|gb|ABR02259.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711671|gb|ABR02262.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711677|gb|ABR02265.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3947750|emb|CAA13580.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146002|gb|ABU53062.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766041|emb|CAB16982.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766087|emb|CAB17005.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766131|emb|CAB17027.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821397|emb|CAA13265.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711407|gb|ABR02130.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711421|gb|ABR02137.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711423|gb|ABR02138.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711431|gb|ABR02142.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711465|gb|ABR02159.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711591|gb|ABR02222.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711741|gb|ABR02297.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI + + + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGISRSENQEELRQAL--KLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146020|gb|ABU53071.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146040|gb|ABU53081.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|48525840|gb|AAT45130.1| D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821385|emb|CAA13259.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|48525838|gb|AAT45129.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|48525844|gb|AAT45132.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|48525848|gb|AAT45134.1| D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146004|gb|ABU53063.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6634605|emb|CAB64493.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|148711587|gb|ABR02220.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711647|gb|ABR02250.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711771|gb|ABR02312.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711773|gb|ABR02313.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711795|gb|ABR02324.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711819|gb|ABR02336.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821360|emb|CAA13247.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821399|emb|CAA13266.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711523|gb|ABR02188.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711553|gb|ABR02203.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711609|gb|ABR02231.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711617|gb|ABR02235.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711625|gb|ABR02239.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711631|gb|ABR02242.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711685|gb|ABR02269.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711687|gb|ABR02270.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711781|gb|ABR02317.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711783|gb|ABR02318.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711785|gb|ABR02319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711797|gb|ABR02325.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711801|gb|ABR02327.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711805|gb|ABR02329.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711811|gb|ABR02332.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711815|gb|ABR02334.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|156145998|gb|ABU53060.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146008|gb|ABU53065.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146010|gb|ABU53066.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146016|gb|ABU53069.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146028|gb|ABU53075.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146048|gb|ABU53085.1| D-alanylalanine synthetase [Streptococcus mitis] gi|156146050|gb|ABU53086.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146874|gb|ABU53449.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146878|gb|ABU53451.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146880|gb|ABU53452.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146888|gb|ABU53456.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146890|gb|ABU53457.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146902|gb|ABU53463.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146014|gb|ABU53068.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711555|gb|ABR02204.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDVPAKISDDVIAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6434095|emb|CAB60644.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634617|emb|CAB64499.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|148711507|gb|ABR02180.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3947731|emb|CAA13579.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766001|emb|CAB16962.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766015|emb|CAB16969.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766017|emb|CAB16970.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766083|emb|CAB17003.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766113|emb|CAB17018.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|2766115|emb|CAB17019.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821362|emb|CAA13248.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821381|emb|CAA13257.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821393|emb|CAA13263.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821407|emb|CAA13270.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821409|emb|CAA13271.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|3821417|emb|CAA13275.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711411|gb|ABR02132.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711413|gb|ABR02133.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711415|gb|ABR02134.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711417|gb|ABR02135.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711435|gb|ABR02144.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711437|gb|ABR02145.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711439|gb|ABR02146.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711451|gb|ABR02152.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711455|gb|ABR02154.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711457|gb|ABR02155.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711459|gb|ABR02156.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711461|gb|ABR02157.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711471|gb|ABR02162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711481|gb|ABR02167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711483|gb|ABR02168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711485|gb|ABR02169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711487|gb|ABR02170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711489|gb|ABR02171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711491|gb|ABR02172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711493|gb|ABR02173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711501|gb|ABR02177.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711531|gb|ABR02192.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711551|gb|ABR02202.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711615|gb|ABR02234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711689|gb|ABR02271.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711717|gb|ABR02285.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711835|gb|ABR02344.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711837|gb|ABR02345.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|331687687|gb|AED88246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|325972390|ref|YP_004248581.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] gi|324027628|gb|ADY14387.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] Length = 314 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 29/257 (11%) Query: 52 DLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 DL FN++ N L V + + L +PY+ +++ DK+ +K+ + G+P Sbjct: 61 DLVFNLVE-NLSSSRLLHLVPLVCQTLSVPYSGGSAYTLSVTGDKLVAKRQLGLAGLPTP 119 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQ-SSSWNHGDQ 165 P + + P ++KP+ +S+GI D S+ D Q S + + Sbjct: 120 PWF---EDVAECSDFLQVPLMLKPVAQEASVGIT----DASVRTFSDKAQLSLALSEHPD 172 Query: 166 LLIEQYVDGIELTCGVMGDAS-LDVTE---IAVPKS--DFYSYELK-------YSSLNST 212 L E+Y+DG E ++ L V E + PK YE K Y + Sbjct: 173 LFAERYIDGREFNLSILPSGRVLPVCEMRFVDYPKDKVKIVGYEAKWQQESFAYQHTQRS 232 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +V + + + +E++RLA + G G +R DF D +R F LE+N P +T S Sbjct: 233 YVFAPEQRV-LVEELKRLAKEVYTLFGSSGYARVDFRVDEQNRP-FILEMNSNPCITADS 290 Query: 273 IFPEMAAYAGYSFRELL 289 F A+ AG S+ E++ Sbjct: 291 GFIAAASEAGMSYTEVI 307 >gi|156146842|gb|ABU53433.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTFPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821358|emb|CAA13246.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146822|gb|ABU53423.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISEDVVAIMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|313192159|emb|CBX19939.1| D alanine-D alanine ligase [Clostridium perfringens] gi|313192163|emb|CBX19941.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 128 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQPG 267 + LE+N PG Sbjct: 116 NIPYVLEVNTLPG 128 >gi|6634609|emb|CAB64495.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|148711623|gb|ABR02238.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G Sbjct: 10 LTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRILVEQGVNAREIEVGLLG 67 Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG Sbjct: 68 NYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGG 126 Query: 241 RGISRSDFLF 250 G+SR DF + Sbjct: 127 LGLSRCDFFY 136 >gi|156146034|gb|ABU53078.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|302389045|ref|YP_003824866.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302199673|gb|ADL07243.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 324 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 29/260 (11%) Query: 24 SALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ-AILELLEI 77 SA+++AGF I+ + ++ VL K DL FN L + A LE I Sbjct: 37 SAIKEAGFDAVMIEWKKDNPQETLRKVLEE-KVDLVFNA-------SSLEEVAFLEAFGI 88 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 P+ SG+ ++ DK K++V+ +P I+V H + P +KP++G Sbjct: 89 PFAGSGL--DLVATDKATRKKIVAYHKLPTPRFIVVEDPNEIPDHDLKYPLFVKPVRGRG 146 Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191 S GI +I++ + + ++ + G L+E+++ G E+T G++G + V E Sbjct: 147 SAGISEENIIERHEDLAR-VVSKITDKIGQPALVEEFIRGREITVGIIGYKNPRVLPPVE 205 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250 I + ++E K H PA++ + ++V+ A ++ + + SR D + Sbjct: 206 IEYNSTRTNTFEHKMFDNEIIHC-PARLSPEEEEKVKSTALSIYKVLNAKDFSRIDMILG 264 Query: 251 -DPLSRKVFWLEINVQPGMT 269 D + ++LEIN G+T Sbjct: 265 DDGIP---YFLEINTFAGLT 281 >gi|114320877|ref|YP_742560.1| hypothetical protein Mlg_1724 [Alkalilimnicola ehrlichii MLHE-1] gi|114227271|gb|ABI57070.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1] Length = 343 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 35/301 (11%) Query: 13 EVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNV----LHGNFGEDGL 67 E + + + ALE G++V +D + L PDLA N + Sbjct: 33 ESEVEAVRQARVALETLGGYRVEVLDDHDRLFDRLREAPPDLALNFCDTGYRNQLRHEQN 92 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126 V A+LELLEIPYT + ++ DK + + +S G+PV V+ + + ++ P Sbjct: 93 VPALLELLEIPYTGATPACMSICGDKALVRLLAASHGIPVPNETFVD---LTADPMVLPE 149 Query: 127 --PYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +IKP G S G+ V+ Q L Q + Q LI+ ++ G E T G+ Sbjct: 150 LYPALIKPNAGCGSQGVTPDSVVHDAQQARACLEQLALEPERPQALIQDFLTGAEYTLGL 209 Query: 182 MGDASLDVTEIAVPKSDFYSYE------LKYSS--------LNSTHVLPAKI-PLDIYKE 226 +G+ T + + + D+ L Y S S PA++ P Sbjct: 210 VGNPETGFTVLPLLEIDYSRLPADLPPILSYGSKVDPNSAYWQSLRFKPAELAPEHQAAM 269 Query: 227 VQRLAFLAHQAIGCRGISRSDFL--FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ FL + +G R +R D+ D + R L+ N P + MA +AGY Sbjct: 270 VEHSVFL-FERLGFRDYARFDYRCGVDGVPR---LLDANFNPTWSYDGKMAIMAGWAGYE 325 Query: 285 F 285 + Sbjct: 326 Y 326 >gi|156146030|gb|ABU53076.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711621|gb|ABR02237.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821371|emb|CAA13252.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFAKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711599|gb|ABR02226.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + LI P + KP GSS+GI K D L ++ + ++L+EQ V+ E+ Sbjct: 7 EEKLIYPVFT-KPSNMGSSVGIS--KSDNQEELRQALRLAFQYDSRVLVEQGVNAREIEV 63 Query: 180 GVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 G++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A Sbjct: 64 GLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFC 122 Query: 237 AIGCRGISRSDFLF 250 AIG G+SR DF + Sbjct: 123 AIGGLGLSRCDFFY 136 >gi|40204849|emb|CAF02025.1| D-alanine:D-alanine ligase [Streptococcus mitis B6] gi|156146018|gb|ABU53070.1| D-alanylalanine synthetase [Streptococcus mitis B6] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLNYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6634611|emb|CAB64496.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|148711679|gb|ABR02266.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711719|gb|ABR02286.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711721|gb|ABR02287.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711723|gb|ABR02288.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711757|gb|ABR02305.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711759|gb|ABR02306.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|156145994|gb|ABU53058.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6634613|emb|CAB64497.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|6434089|emb|CAB60641.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634599|emb|CAB64490.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|3821377|emb|CAA13255.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146860|gb|ABU53442.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|2766003|emb|CAB16963.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae] gi|3821364|emb|CAA13249.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|148711449|gb|ABR02151.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711497|gb|ABR02175.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711503|gb|ABR02178.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711641|gb|ABR02247.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|156146832|gb|ABU53428.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146834|gb|ABU53429.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146836|gb|ABU53430.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146806|gb|ABU53415.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EKKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146058|gb|ABU53090.1| D-alanylalanine synthetase [Streptococcus mitis] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEAAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146820|gb|ABU53422.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821405|emb|CAA13269.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRPALELAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146830|gb|ABU53427.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|3821342|emb|CAA13245.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|19351919|emb|CAD19596.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|19351921|emb|CAD19597.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|123204379|gb|ABM73540.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|148711603|gb|ABR02228.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146862|gb|ABU53443.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|242309199|ref|ZP_04808354.1| ligase [Helicobacter pullorum MIT 98-5489] gi|239524240|gb|EEQ64106.1| ligase [Helicobacter pullorum MIT 98-5489] Length = 345 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 15/234 (6%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + N++HG GE+G++ ++L+ I Y A LS DK +K + + G+ S+ Sbjct: 89 MVLNLIHGGDGENGVIASLLDFYGIAYIGPRNPACVLSFDKELTKLLAKNRGI---LSLD 145 Query: 113 VNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +Q I P+ +IKP + GSS+GI + + LD ++ + ++ ++E Sbjct: 146 YQVLYKGAQKEIKFPFPVIIKPARLGSSIGIFIANNQKE--LDYGLEEAFEYDNKAIVEP 203 Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNST-HVLPAKIPLDIYKE 226 ++ GI+ G + + + P K +F +E KY + T + A IP + K Sbjct: 204 FISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFEKKYLDFSRTQNAKEADIPEALQKT 263 Query: 227 VQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +Q ++ + + R DF D L + EIN PG +F + Sbjct: 264 LQDNFIKIYENLFEGALIRCDFFVKDDL---CYLNEINPIPGSMANYLFDDFKG 314 >gi|115379297|ref|ZP_01466409.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca DW4/3-1] gi|310821036|ref|YP_003953394.1| d-ala d-ala ligase family [Stigmatella aurantiaca DW4/3-1] gi|115363707|gb|EAU62830.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca DW4/3-1] gi|309394108|gb|ADO71567.1| D-ala D-ala ligase family [Stigmatella aurantiaca DW4/3-1] Length = 344 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 121/270 (44%), Gaps = 34/270 (12%) Query: 52 DLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 DL FN+ F ED V A++E+ + +T SG L+ DK+ +KQ++ +P Sbjct: 60 DLVFNLCE-TFAEDYRLEVNVAALMEMARVKFTGSGTAGLLLAQDKILTKQLLEYHEIPT 118 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163 + T+++ ++ P ++KP + +S+GI +V +Q D ++ Sbjct: 119 PDFATFDGSTVETNGDLAFPLIVKPARSDASIGIGGKSLVNSWEQLT--DRVREIRKELR 176 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH---------- 213 D+ L E+++ G E+ G++G L + + + DF +++ +++ Sbjct: 177 DEALAEEFIQGREVYVGIIGTKELPEI-LPIVELDFGNWDKDKPTISDREVKFGPETEGS 235 Query: 214 ---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQP 266 V+ I + + V+R A LA++A+ + +R D DP + LE+N P Sbjct: 236 PKLVIARDISPVLRQRVERAALLAYRALKLQDYARIDLRISEQDDP-----YILEVNPNP 290 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + A G S+ +L+ +++ A Sbjct: 291 YLEDKGELALAAREKGLSYTQLIGRILDSA 320 >gi|222446081|ref|ZP_03608596.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii DSM 2375] gi|222435646|gb|EEE42811.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii DSM 2375] Length = 367 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +IP + + A L+ DK+++K+ + GVP ++ + +S+ + P V+K +G Sbjct: 90 DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 I V + LD ++ + D L E++++G E++ V+G VP Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198 Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 S Y E LN P + VQR A+ + +G GI DF+F Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258 Query: 253 LSRKVFWLEINVQPGMT 269 ++++ +E+N +P T Sbjct: 259 DEQQLYAIEVNTRPNGT 275 >gi|148642421|ref|YP_001272934.1| carbamoyl-phosphate synthase, large subunit, CarB [Methanobrevibacter smithii ATCC 35061] gi|148551438|gb|ABQ86566.1| carbamoyl-phosphate synthase, large subunit, CarB [Methanobrevibacter smithii ATCC 35061] Length = 367 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +IP + + A L+ DK+++K+ + GVP ++ + +S+ + P V+K +G Sbjct: 90 DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 I V + LD ++ + D L E++++G E++ V+G VP Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198 Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 S Y E LN P + VQR A+ + +G GI DF+F Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258 Query: 253 LSRKVFWLEINVQPGMT 269 ++++ +E+N +P T Sbjct: 259 DEQQLYAIEVNTRPNGT 275 >gi|156146816|gb|ABU53420.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|156146808|gb|ABU53416.1| D-alanylalanine synthetase [Streptococcus oralis Uo5] gi|156146898|gb|ABU53461.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|148711669|gb|ABR02261.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|220961818|gb|ACL93346.1| D-alanine D-alanine ligase [Streptococcus thermophilus] gi|220961820|gb|ACL93347.1| D-alanine D-alanine ligase [Streptococcus thermophilus] Length = 152 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP GSS+GI + + + +DL + + ++LIEQ V E+ G++G+ Sbjct: 34 PVFVKPANMGSSVGISKAENESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89 Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 ++ T+ D FY Y+ KY T +PA++P+++ +++ A A +A+G G Sbjct: 90 TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCG 149 Query: 243 ISR 245 ++R Sbjct: 150 LAR 152 >gi|56368336|emb|CAF02125.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|148711643|gb|ABR02248.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G++G+ Sbjct: 13 PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70 Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + T E+ V FY Y+ KY T +PAKI D+ +++ A A +AIG G+ Sbjct: 71 VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRAIGGLGL 129 Query: 244 SRSDFLF 250 SR DF + Sbjct: 130 SRCDFFY 136 >gi|220961816|gb|ACL93345.1| D-alanine D-alanine ligase [Streptococcus thermophilus] Length = 152 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP GSS+GI + + + +DL + + ++LIEQ V E+ G++G+ Sbjct: 34 PVFVKPANMGSSVGISKAENESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89 Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 ++ T+ V FY Y+ KY T +PA++P+++ +++ A A +A+G G Sbjct: 90 TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCG 149 Query: 243 ISR 245 ++R Sbjct: 150 LAR 152 >gi|307323017|ref|ZP_07602266.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti AK83] gi|306891336|gb|EFN22273.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti AK83] Length = 280 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 21/267 (7%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC----GV 105 + + N+LHG FGEDG +Q + L + + ++L+M+K VSS + Sbjct: 8 RNEYVVNLLHGQFGEDGGIQTLAALSGVTGSFGDPHVASLTMNKYAMSAFVSSLLPAERI 67 Query: 106 PVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQS 157 V + L+ +D + P+V+KP GSSL + I D+ I L Sbjct: 68 RVPKTTLITPRNVDQLINIARSLDRPFVVKPNSLGSSLFAQLFDDPISSDEEI--HTLLR 125 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTH 213 + + +I++++ G E TCG + +S +V + + K ++F + KYS N Sbjct: 126 KIFTYDTAAVIQEFISGDEYTCGCLISSS-EVIPLPIVKLEADNEFCGRDQKYSK-NVAK 183 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +I + +Q +A +I ++R DF ++++LE N PG Sbjct: 184 KSVVNRNDEISERIQNIATSIASSIDLYNMARFDFRVSD-EDEIWFLECNYIPGTAKNGS 242 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 F +M G + +L+ + ++ + Sbjct: 243 FEKMLNSYGMTVVDLISRITSNSKTFK 269 >gi|156146858|gb|ABU53441.1| D-alanylalanine synthetase [Streptococcus oralis] gi|156146870|gb|ABU53447.1| D-alanylalanine synthetase [Streptococcus oralis] Length = 147 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ ++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|56368332|emb|CAF02123.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|56368324|emb|CAF02119.1| D-alanine-D-alanine ligase [Oenococcus oeni] gi|56368326|emb|CAF02120.1| D-alanine-D-alanine ligase [Oenococcus oeni] gi|56368330|emb|CAF02122.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|56368328|emb|CAF02121.1| D-alanine-D-alanine ligase [Oenococcus oeni] gi|56368338|emb|CAF02126.1| D-alanine-D-alanine ligase [Oenococcus oeni] gi|56368342|emb|CAF02128.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|148711651|gb|ABR02252.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A A A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFCA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|149194598|ref|ZP_01871694.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2] gi|149135342|gb|EDM23822.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2] Length = 341 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 14/230 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ N++HG GEDG + A+LE +I + A ++S +K+ +K V V Sbjct: 89 DVVINLIHGRDGEDGKIPAMLEFYKIKAITPNVEACSVSYNKVLTKAYAKEMRVNVIEYE 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +++ + P +IKP + GSS+G+ + K + + ++ D +++E + Sbjct: 149 IIDS----PKTKFDFPVIIKPARLGSSIGVSIAKNQDELNYAFDVAREFD--DLIIVEPF 202 Query: 172 VDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++GIE L GD + V K +F ++ KY + V + L+I ++ + Sbjct: 203 IEGIEEYNLAGCKAGDEWIFSKLEKVEKKEFLDFDKKYMDFSRKEVKINE-NLEIKEKFK 261 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277 + I + R DF + +L EIN PG +F + Sbjct: 262 TEFKKIYNNIFKNALIRCDFF---CKDDIIYLNEINPIPGSMANYLFDDF 308 >gi|148711605|gb|ABR02229.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D+ +++ A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETTFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|312132199|ref|YP_003999539.1| d-alanine--d-alanine ligase [Leadbetterella byssophila DSM 17132] gi|311908745|gb|ADQ19186.1| D-alanine--D-alanine ligase [Leadbetterella byssophila DSM 17132] Length = 585 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-MRSKQVVSSCGVPVCPS 110 D AF V+HG EDG +Q +LE L IPY GIL SA+ ++K ++K + + G Sbjct: 112 DFAFVVMHGPSAEDGSIQGLLEWLNIPYLGPGILGSAVGINKPFQNKLMAYATGQEKKYL 171 Query: 111 ILVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKK 146 + R T D L S P+V+K GSS+G+ +++K Sbjct: 172 TISKREWNTSDRSKLFSSVIAKLGFPFVVKAPHQGSSIGVAIVRK 216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 9/154 (5%) Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY------SYELKY 206 ++ Q +S N D +LIE+++ G E +CGV+ D V + +P ++ Y ++ KY Sbjct: 291 EVAQLNSVNGEDYVLIEEFISGQEFSCGVIQDDEGRV--LPLPPAEVYGETATFDFKAKY 348 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S S +P K +++ A +A G I R D F V + N P Sbjct: 349 KSTVSKKRIPVKTSDANLEKIHEDVLKAFEATGMSVICRID-GFITEDDVVVLHDPNTLP 407 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GM+P S + A G++ L + + + R Sbjct: 408 GMSPSSFIFKQMAEVGFNITNSLTYFIRQSLIER 441 >gi|56368340|emb|CAF02127.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|254459120|ref|ZP_05072542.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1] gi|207084013|gb|EDZ61303.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1] Length = 345 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 49/320 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLA----------- 47 + +L GG S E E+S+ S L +GF +S + D D L+ A Sbjct: 3 LTILFGGASFEHEISIVSAITLKGKL--SGFDLSFVFCDQDHKFYLIEASKMKATTFSRG 60 Query: 48 -HLK-PDLA---------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 H K P L+ N++HG GEDG + ++L+ I Y Sbjct: 61 EHKKMPQLSITNGSFSQKTMFSSVEHTGTVLNLIHGADGEDGTIASLLDFFSIKYIGPRT 120 Query: 85 LASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 AS S DK +K + + + V +L ++ + I P +IKP + GSS+G+ + Sbjct: 121 DASVFSYDKRYTKWLCVAKNIKSVEYEVLSSK--EHTNINIPYPIIIKPARLGSSIGVSI 178 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200 ++ + LD ++ +++E +++G++ G M + + + P K +F Sbjct: 179 VRNESE--LDYALDVAFEFDKTVIVEPFIEGVKEYNLAGFMAKGEVYFSIVEEPQKEEFL 236 Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 +E KY + S VL A I ++ +++R ++ + + R DF + KV Sbjct: 237 DFEKKYMDFSRSEKVLKAGISPELEVKLKRAFEKVYKNLFEGALIRCDFFV--VDGKVLL 294 Query: 260 LEINVQPGMTPVSIFPEMAA 279 EIN PG +F + + Sbjct: 295 NEINPIPGSMANYLFDDFKS 314 >gi|283781145|ref|YP_003371900.1| GCN5-like N-acetyltransferase [Pirellula staleyi DSM 6068] gi|283439598|gb|ADB18040.1| GCN5-related N-acetyltransferase [Pirellula staleyi DSM 6068] Length = 508 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 33/311 (10%) Query: 10 SEREVSLSSGKACASALEDAGFKV----SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 S+R+V L A AG+ V + +D R V +L + D+ FN++ G D Sbjct: 19 SDRDV-LEQVAVVEQACRAAGWPVEVCETSLDFTR-VDQLLTSGRFDVVFNLVESLAGSD 76 Query: 66 GLVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 L + + L+E +P T S A LS DK+ +KQ++ +P ++ S Sbjct: 77 QLAELFVRLVEARGVPITGSSARALQLSNDKIATKQLLREKQLPTAAWCTLDDAGNASAE 136 Query: 123 LISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L PP+++K + +SLG+ V+ + +++ + G EQ++DG E Sbjct: 137 L-RPPWIVKAIGQHASLGLDDSCVVLGPAADVAAAIRAQAARLGTPCFAEQFIDGREFNV 195 Query: 180 GVM----GDASLDVTEI-----AVPKSDFYSYELKYSSLNS-------THVLPAKI-PLD 222 ++ G L + EI K Y+ K+S+ ++ T PA PL Sbjct: 196 SLLATEQGVEVLPIAEILFVDFPAGKPRIVGYDAKWSADSAEFTGTPRTFDFPASDGPL- 254 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +++L+ A +++ G +R DF D ++ + LE+N P ++P + F AA +G Sbjct: 255 -LALLEKLSREAWKSLQLSGYARIDFRVDQQAQPLL-LEVNTNPCLSPDAGFAAAAAQSG 312 Query: 283 YSFRELLLWMV 293 S E + +V Sbjct: 313 RSLEEAIQQIV 323 >gi|1857222|gb|AAB49637.1| vancomycin resistance protein [Enterococcus casseliflavus] Length = 123 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 10/122 (8%) Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------P 127 +++PY G+ SAL M+K Q ++ GV P+IL+ + Q I P Sbjct: 1 MKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFP 59 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ SL Sbjct: 60 VFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGNDSL 117 Query: 188 DV 189 V Sbjct: 118 TV 119 >gi|92111856|gb|ABE73672.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P+++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111858|gb|ABE73673.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP GSS+GI ++ + + +DL + + ++LIEQ V E+ G++G+ Sbjct: 34 PVFVKPANMGSSVGISKVENEAELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89 Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 ++ T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G Sbjct: 90 TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCG 149 Query: 243 ISR 245 ++R Sbjct: 150 LAR 152 >gi|19351923|emb|CAD19598.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] gi|48525854|gb|AAT45137.1| D-alanine D-alanine ligase [Streptococcus mitis] gi|48525858|gb|AAT45139.1| D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY T +PAKI D +++ A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDEVAVMRQNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|313192171|emb|CBX19945.1| D alanine-D alanine ligase [Clostridium perfringens] gi|313192173|emb|CBX19946.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 128 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ + + +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEGVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + ++ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQPG 267 + LE+N PG Sbjct: 116 NIPYVLEVNTLPG 128 >gi|313192153|emb|CBX19936.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 116 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 8 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 65 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 K+ D++KEV+++A ++ + C +R D L + LE+N PGMT Sbjct: 66 KLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--DNIPYVLEVNTLPGMT 115 >gi|313192157|emb|CBX19938.1| D alanine-D alanine ligase [Clostridium perfringens] gi|313192161|emb|CBX19940.1| D alanine-D alanine ligase [Clostridium perfringens] gi|313192167|emb|CBX19943.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 127 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQP 266 + LE+N P Sbjct: 116 NIPYVLEVNTLP 127 >gi|297170877|gb|ADI21895.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0130_26L16] Length = 211 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 9/108 (8%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG GEDG VQ +LEL + Y +G+ ASA+ MDK ++ V + G+ + Sbjct: 95 DVVFPLLHGPRGEDGSVQGLLELADAAYVGAGVAASAVGMDKELARAVFAQAGLRQTEYL 154 Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSI 150 ++ R ++ D Q + P +KP+ GSS+GI + QS+ Sbjct: 155 VIRRSAWSADRQGALEEIEAKLRYPLFVKPVNLGSSIGISKVHDSQSL 202 >gi|92111826|gb|ABE73657.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111860|gb|ABE73674.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111878|gb|ABE73683.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111854|gb|ABE73671.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111836|gb|ABE73662.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRSYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111872|gb|ABE73680.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRTYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|3821373|emb|CAA13253.1| D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P KP GSS+GI K + L ++ + ++L+EQ V+ E+ G Sbjct: 7 EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64 Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++G+ + T E+ V FY Y+ KY + +PA I ++ ++R A A +A Sbjct: 65 LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKISMDIPANISDEVIAVMRRNAETAFRA 123 Query: 238 IGCRGISRSDFLF 250 IG G+SR DF + Sbjct: 124 IGGLGLSRCDFFY 136 >gi|92111862|gb|ABE73675.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111864|gb|ABE73676.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111832|gb|ABE73660.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111840|gb|ABE73664.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111848|gb|ABE73668.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111852|gb|ABE73670.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|83414209|dbj|BAE53895.1| D-alanine:D-alanine ligase [Streptococcus mutans] gi|83415068|dbj|BAE53793.1| D-alanine:D-alanine ligase [Streptococcus mutans] Length = 96 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + ++LIEQ VD E+ G++G+ + T EI V FY YE KY T +PA+ Sbjct: 8 YDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAFYDYEAKYIDNKITMAIPAE 66 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 I I ++++ A A + +GC G+SR DF Sbjct: 67 IDPVIVEKMRDYAATAFRTLGCCGLSRCDF 96 >gi|92111874|gb|ABE73681.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111876|gb|ABE73682.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111880|gb|ABE73684.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111824|gb|ABE73656.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111830|gb|ABE73659.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111834|gb|ABE73661.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111838|gb|ABE73663.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111842|gb|ABE73665.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111844|gb|ABE73666.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111846|gb|ABE73667.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111850|gb|ABE73669.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111828|gb|ABE73658.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP GSS+GI + + + +DL + + ++LIEQ V E+ G++G+ Sbjct: 34 PVFVKPANMGSSVGISKAENESELRAAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89 Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 ++ T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G Sbjct: 90 TNIKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCG 149 Query: 243 ISR 245 ++R Sbjct: 150 LAR 152 >gi|328774412|gb|EGF84449.1| hypothetical protein BATDEDRAFT_34316 [Batrachochytrium dendrobatidis JAM81] Length = 790 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/346 (21%), Positives = 132/346 (38%), Gaps = 55/346 (15%) Query: 3 VLMGGIS---------SEREVSLSSGKACASALEDAGFKVSQ---IDVDRSVGLVLAHLK 50 VLMG S + + + + K AL D G+ Q ID + + L+ Sbjct: 435 VLMGDTSMPCVGKLGDTWNQEDIETRKQLVKALYDIGYSDEQLEIIDTHKDLVHTLSEKS 494 Query: 51 PDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 N + D L + A+L++ I Y+ +G + DK + GVP Sbjct: 495 VSFVLNFCDEGYQNDALKEMHIPALLDMANIQYSGAGPNCLTICYDKGLVNSTARTLGVP 554 Query: 107 ----------VCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGII---VIKKDQSIP 151 V S + + +D + I P IKP+KG +SLGI +I + Sbjct: 555 TPREMTYLSDVATSAVADLNKVDQLIREQILYPAFIKPIKGDNSLGITSRSIIHNKAELA 614 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF-----------Y 200 + + S D +L+++Y+ G E G++G++ K D+ Sbjct: 615 SYMDELSGIGIRD-VLVQEYLTGTEYGIGMVGNSETGFHFFPTLKVDYSKIVEKQLEPIL 673 Query: 201 SYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF------ 250 YE K+ + + A + ++ ++++ + + GCR +R DF Sbjct: 674 GYESKWDPSSPYWSDISYVAANLSAEVDNDLRKACVVLWKRFGCRDYARFDFRSDVGTGD 733 Query: 251 --DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D L + LE+N PG MA G ++++L +++ Sbjct: 734 NKDGLGGTIKLLEVNPNPGWCWDGKLAYMAKLDGIEYKDMLRMIIQ 779 >gi|92111866|gb|ABE73677.1| D-alanine:D-alanine ligase [Streptococcus vestibularis] Length = 152 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAGLHAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111882|gb|ABE73685.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ D FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHMPAEVMTQMRAYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|92111868|gb|ABE73678.1| D-alanine:D-alanine ligase [Streptococcus salivarius] gi|92111870|gb|ABE73679.1| D-alanine:D-alanine ligase [Streptococcus salivarius] Length = 152 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + L + + ++LIEQ V E+ G++G+ + Sbjct: 34 PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + T+ V FY Y+ KY T +PA +P ++ +++ A A +A+G G++ Sbjct: 92 VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGLA 151 Query: 245 R 245 R Sbjct: 152 R 152 >gi|313192155|emb|CBX19937.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 127 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK F+ KY + + K+ D+ KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLNKEVEKMALETYKLLKCDVYARVDMLVK--D 115 Query: 255 RKVFWLEINVQP 266 + LE+N P Sbjct: 116 NIPYVLEVNTLP 127 >gi|83414029|dbj|BAE53805.1| D-alanine:D-alanine ligase [Streptococcus mitis] Length = 96 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V DFY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74] gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM 74] Length = 551 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 57/202 (28%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + + GG + EREVS + G+ + L+ F+ + VD Sbjct: 3 IGIFFGGPAREREVSFAGGRTALANLDKGLFEPVLVFVDGRGRFRLVSPDFLQSPSLHDA 62 Query: 40 -----------------RSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELL 75 ++ +L L+P DLAF +HG EDG +Q +LE Sbjct: 63 LPQDSSGFSVYDESLAVDTLDAILPELRPEQFRDHFDLAFLAMHGPDCEDGAIQGLLEWH 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLI 124 ++PYT G++ SA+ ++K+ ++++ + ++R F +HL Sbjct: 123 KMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATISRDDYEQADKAQFFQSLVEHL- 181 Query: 125 SPPYVIKPLKGGSSLGIIVIKK 146 P VIK GSS+G+ ++++ Sbjct: 182 GLPIVIKAPHQGSSIGVAIVRE 203 >gi|261885497|ref|ZP_06009536.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 166 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N++ G GEDG + + E + + + AS +S +K ++ + C V P ++ R Sbjct: 42 NLIRGRDGEDGKIAGMFEFYNVTFIGHRLEASVMSFNKELTQLLAHKCAVKSLPYEMIKR 101 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + L P+++KP + GSS+G+ V++ + LD ++ +L+E + +GI Sbjct: 102 GDIVKTEL---PFILKPARLGSSIGVSVVRDISN--LDYALDVAFEFDKDILVEPFKEGI 156 Query: 176 E 176 Sbjct: 157 R 157 >gi|313192175|emb|CBX19947.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 125 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDML 112 >gi|313192165|emb|CBX19942.1| D alanine-D alanine ligase [Clostridium perfringens] gi|313192177|emb|CBX19948.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 121 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDML 112 >gi|253755099|ref|YP_003028239.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251817563|emb|CAZ55310.1| putative D-alanine--D-alanine ligase [Streptococcus suis BM407] Length = 316 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 35/255 (13%) Query: 57 VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 VL+ +FG + V A E I Y + L DK +++ + GV V S+ Sbjct: 66 VLNFDFGYKSRTRNMNVPAFCENYNIKYFNPDPYVQVLCQDKFMTEKFAENFGVTVPNSL 125 Query: 112 LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165 LV + + L ++ P +IKP S+GI +D + D + + D Sbjct: 126 LVFKHSYQKNLLKDLNYPLIIKPNYESESIGIT---QDSIVENPGDADTIIGKLFKEFDG 182 Query: 166 LLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +L+E+Y++G E+ + + + E+ P+ + E+KY + S + KI + Sbjct: 183 ILVEEYIEGKEVAITIWDNGEEIFFEEVELIFPRLE----EIKYQAYTSE--IKQKIGI- 235 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--------KVFWLEINVQPGMTPVSIF 274 E+++ +L+ + I + + L R K + +EIN PG+ P S+ Sbjct: 236 ---EIKKSCYLSDKDIINLKQLYKNLSPNKLIRIDGRIKNSKFYLIEINANPGLYPKSVV 292 Query: 275 PEMAAYAGYSFRELL 289 P+ GY + +L Sbjct: 293 PKTFLINGYDYETML 307 >gi|325003336|ref|ZP_08124448.1| D-alanine--D-alanine ligase domain-containing protein [Pseudonocardia sp. P1] Length = 346 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + PP VIKP+ +S+G+ + + D++I + + + H ++ L+EQ+V G E+ CG++ Sbjct: 149 LRPPLVIKPVDTDNSVGVTLAETDETIEVAI--KDALAHSERALVEQFVPLGREVRCGII 206 Query: 183 ---GD-ASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAK------IPLD-IYKEV 227 GD L + E + +D +L S+ ++ P D + V Sbjct: 207 DRGGDLVGLPLEEYRMDPTDKPIRLADDKLDRSATGDLRLVAKDDRSWIVDPADPLTATV 266 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A A++A+GCR DF DP R +++LE + S+ MA A RE Sbjct: 267 HDAARRAYRALGCRHYGLFDFRVDPNGR-LYFLEAGLYCSFAHSSVVATMAHAAATPVRE 325 Query: 288 LLLWMVEDA 296 L ++ A Sbjct: 326 LFADLISAA 334 >gi|56368334|emb|CAF02124.1| D-alanine-D-alanine ligase [Oenococcus oeni] Length = 147 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 42/68 (61%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + +LK D+ F +HGN GEDG + + L+ IP SG+ A A+S DK+ +K++++ G+ Sbjct: 47 IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPNVGSGLRAHAISFDKVITKELMTVNGI 106 Query: 106 PVCPSILV 113 I++ Sbjct: 107 RNTKYIVI 114 >gi|332703218|ref|ZP_08423306.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553367|gb|EGJ50411.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 341 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 31/259 (11%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---AILELLEIPYTHSGILASALSMD 92 +D+D + G LA ++P+ FN++ G L A+LE + +P+T G + LS Sbjct: 45 LDLDDARG-TLAAMRPNCVFNLVEDVGGSSRLAHLAPALLEHMGMPFTGCGSESMLLSTS 103 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ-SIP 151 K+ K+V+++ G+P P + + + Y++K + +SLG+ Q S P Sbjct: 104 KLACKRVLTAAGIPTPP---WSEGLPEETSFVPGRYILKSVYEHASLGLDETSVVQASSP 160 Query: 152 LDL---LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEI-----AVPKSDF 199 DL L G + E +VDG E V+ G L EI + + Sbjct: 161 ADLAKPLARRRERFGGRWFAEGFVDGREFNIAVIDGPNGPEVLPHAEIVFRGFSKERLRI 220 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGC------RGISRSDFLFDP 252 Y K+ +S + D K+ Q LA L+ A+GC G +R DF Sbjct: 221 VGYRAKWDE-DSFEYENTQRRFDFPDKDAQILAQLSQSALGCWRAFGLTGYARVDFRV-- 277 Query: 253 LSRKVFW-LEINVQPGMTP 270 W +++N P ++P Sbjct: 278 AEDGTPWIIDVNANPCLSP 296 >gi|330814383|ref|YP_004358622.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327487478|gb|AEA81883.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 370 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 31/272 (11%) Query: 46 LAHLKPDLAFN-VLHGNFGEDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LA KPDL F+ V + F E + + LE I Y SG A DK R+K+++ Sbjct: 85 LAIRKPDLVFSGVKYFTFNERIIWLNDYLETHGISYIASGREALEYEHDKSRAKEIMQKA 144 Query: 104 GVPVCPSILVNRFTM------DSQHL-ISPPYVIKPLKGGSSLGI---IVIKKDQSIPLD 153 + + FT D + L + P +KP+ GG S GI V+ +S Sbjct: 145 DIKTA-----DFFTTEPGEYPDQESLPVKFPLFVKPVTGGDSRGIDFKSVVHDFKSFEAK 199 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDV--TEIAVPKSD----FYSYEL 204 +L L+E ++ G E + G++ D+ +L+ EI V K+ +++ Sbjct: 200 VLD-IKMKQKSTSLVETFLSGKEYSVGILQDSFSGTLNAMPVEIMVDKNINGHCILDFDI 258 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K N V+ A +I+ ++ LA + A+G + + R D + L+ F +E N+ Sbjct: 259 KK---NDEEVVIAVTDKEIFNQLCNLAKKSFIALGGKSLGRIDIKMNHLNEPHF-IEANL 314 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG++ F S+ E++L + ++ Sbjct: 315 MPGLSKGYFFRSCFLNLNMSYEEMILLIAKNG 346 >gi|312115133|ref|YP_004012729.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC 17100] gi|311220262|gb|ADP71630.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC 17100] Length = 341 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 18/250 (7%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF---NVLHGNFGEDGLVQAILELLEIPYTHS 82 L D G++V + L+ A + D+ F N + N E + ++ E L IPY + Sbjct: 55 LRDLGYRVRT--ASEPLALLAAKGEADIVFSLYNRMPINNPEV-FIPSLCEYLRIPYVGA 111 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 AL+ DK +K + G+PV ++ + + + PY +K G +S GI Sbjct: 112 RPNIRALAEDKWLAKLAAKAIGIPVSEGAVYADEAALATPPGFPGPYFVKQRFGAASEGI 171 Query: 142 IVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-VTEIAVPKSD- 198 +D + + G +L+E Y GI++T +G A+ V + P+SD Sbjct: 172 SAESIQDDWAGAARVAAKLMARGMAVLVEGYAPGIDITVPSLGSANGPLVLGVVRPRSDK 231 Query: 199 ---FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +LK S + A ++ D+ + L +A G R D+ FDP + Sbjct: 232 AGGIITEDLKRSDPLGYEIFEAGRVEDDLRADAATL----WRATGPMDYFRMDYRFDPET 287 Query: 255 RKVFWLEINV 264 + +LE N+ Sbjct: 288 GRRVFLEFNI 297 >gi|83414179|dbj|BAE53880.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + + E+ V FY YE KY N T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNNITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAK+ D+ +++ A A AIG G+SR DF Sbjct: 64 PAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96 >gi|83414207|dbj|BAE53894.1| D-alanine:D-alanine ligase [Streptococcus mutans] Length = 96 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + ++LIEQ VD E+ G++G+ + T EI V FY YE KY T +PA+ Sbjct: 8 YDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAFYDYEAKYIDNKITMAIPAE 66 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 I I ++++ A A + + C G+SR DF Sbjct: 67 IDPVIVEKMRDYAATAFRTLDCCGLSRCDF 96 >gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053] gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053] Length = 566 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS------DFYSYELKYSSLNS 211 SS N DQ+L+E++V G E +CG + D + +A+P S + + + KY S Sbjct: 291 SSSNAEDQVLVEEFVSGQEFSCGCI--QFDDGSPLALPPSEVIKMVEVFDFNTKYKPGAS 348 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 P L+ +E+Q++ + +G R D P + + N PGM+P Sbjct: 349 RKRTPVGTTLEKNREIQQMIAATFRQLGIDACVRIDGFLKP-DGTILLHDPNTIPGMSPT 407 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S + A G + + L ++V + Sbjct: 408 SFIFKQMAEIGLTVTQALTYLVRQS 432 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---------- 101 D AF +HG EDG +Q +LE +IPY+ G++ SA+ +DK+ +++ Sbjct: 106 DFAFLAMHGPDCEDGAIQGLLEWYKIPYSGPGLMGSAVGIDKILQNDMIALVNGQEKKSW 165 Query: 102 ----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 S VP +L F + +HL P V K GSS+G+ ++K D Sbjct: 166 TLKYSQWVPRDYPLL---FQVLKKHL-GLPLVFKAPHQGSSIGVAIVKDD 211 >gi|193872932|gb|ACF23156.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY + T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYINNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAAMRRNAETAFRAIGGLGLSRCDF 96 >gi|253580995|ref|ZP_04858256.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39B_FAA] gi|251847658|gb|EES75627.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39BFAA] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 13/163 (7%) Query: 50 KPDLAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 + D+ F + GN + LV I E I Y + + + DK SK++ G+ V Sbjct: 65 RNDIVFTIYGGNSSRNRMALVPGICESYNIKYVGADVYNRIICQDKNISKELAKKAGILV 124 Query: 108 CPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWN 161 S+ +N + HL+ P VIKPL GSS+GI + + +I + ++ Sbjct: 125 PDSVTINSLDNLNTFNLHLLKYPVVIKPLMEGSSIGITKNSLCQNANNIK-EKIEKLYKT 183 Query: 162 HGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFY 200 + +++EQ++ G E+ ++G + ++ E+ V + + Y Sbjct: 184 YNQPIMVEQFIPGKEIVTCLVGSSKNIRLAEMVEVCVEQDNTY 226 >gi|224368435|ref|YP_002602598.1| DdlB1 [Desulfobacterium autotrophicum HRM2] gi|223691151|gb|ACN14434.1| DdlB1 [Desulfobacterium autotrophicum HRM2] Length = 339 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 37/296 (12%) Query: 21 ACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE- 76 A + AL G++ + D ++ L +KP + FN++ G L+Q + L+E Sbjct: 29 AVSQALSGLGYEPIAVPCDLDLNALKQTLTAMKPAVVFNLVESLDGHGRLIQVVPALVEA 88 Query: 77 IPYTHSGILASA--LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISP--PY 128 + Y +G A A L+ K+ +K+ + S G+P + +N +D + P + Sbjct: 89 LGYACTGCPAEAIYLTSHKVMAKERMRSLGLPT--ADWINPVPLDIPWQGAADLGPTGTW 146 Query: 129 VIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--- 182 +IK L +SLG+ ++K + LL + G EQ++ G E +M Sbjct: 147 IIKSLWEHASLGLELENLVKGNSREIAALLPDRASALGGACFAEQFIQGREFNLSLMDTD 206 Query: 183 -GDASLDVTEIAVPKSD-----FYSYELKY--------SSLNSTHVLPAKIPLDIYKEVQ 228 G L EI D Y K+ ++ S P PL ++ Sbjct: 207 KGVRVLPPAEIIFKGFDHDQPKIVGYRAKWVQDAAEYHNTPRSFDFSPKDAPL--IANLE 264 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 RL+ G RG +R DF D L F LE+N P ++P + F AG S Sbjct: 265 RLSLGCWHGFGLRGYARVDFRVDDLGNP-FILEVNTNPCISPDAGFCAALEQAGIS 319 >gi|294101200|ref|YP_003553058.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293616180|gb|ADE56334.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 350 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 30/271 (11%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +P FN+ G FG + ++A ILE + +T + A L +DK Q + Sbjct: 73 INEYQPLCVFNLFEG-FGSEPWLEASFCEILEKNNLTFTGNPSGALRLCIDKHTLHQQLK 131 Query: 102 SCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + G+PV S L + T+ + IS P IKP + S+GI KK + LQ S Sbjct: 132 TAGIPVPLSYFLKGKETLGTLENISFPLFIKPCREDGSVGI--DKKSLVFNEEELQESVT 189 Query: 161 NH----GDQLLIEQYVDGIELTCGVMGDA--------SLDVTEIAVPKSDFY-SYELKYS 207 D +LI++++ G E + + +LD + P+ Y SY+ K++ Sbjct: 190 EKLAKFPDGILIQEFLSGPEYCVSFVDNGPFSPVGLWTLDYSR--YPECPAYLSYDAKWN 247 Query: 208 SLNST--HVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 NS ++ P +I LD + + + +A A GC+G R D + +F ++IN Sbjct: 248 E-NSPEWNLWPEEIDLDYSLKETILHMASRAALVAGCKGYFRVDLREN--QGHLFVMDIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P +T S G ++ +L++ +++ Sbjct: 305 PNPALTRDSGMARQYMQKGKTYEQLVMKILQ 335 >gi|313192179|emb|CBX19949.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 124 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK F+ KY + + K+ +++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDVYARVDML 112 >gi|83414023|dbj|BAE53802.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83414027|dbj|BAE53804.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415084|dbj|BAE53801.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|193872876|gb|ACF23128.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873028|gb|ACF23204.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873076|gb|ACF23228.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873086|gb|ACF23233.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V DFY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|74039799|gb|AAZ94921.1| putative D-alanine:D-lactate ligase [uncultured bacterium] Length = 126 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----FYSYELKYS----SL 209 ++ + ++LIE+ V G E+ C ++G+ S D+ V + D F+ + S S Sbjct: 17 TARQYDSKILIEEAVVGREIGCAILGEGS-DLIVGEVDRVDLSHGFFRIHQEDSPETGSE 75 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251 NST ++PA IP D + VQ ++A+GC+G++R D FL D Sbjct: 76 NSTFIVPADIPEDSRRLVQETGMAFYRALGCKGLARVDMFLTD 118 >gi|83414081|dbj|BAE53831.1| D-alanine:D-alanine ligase [Streptococcus oralis] Length = 96 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYHDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|313192169|emb|CBX19944.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 125 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+ +++ + + +L++ ++ +++IE+Y+ G E+TC ++ L V I Sbjct: 2 GGSSVATTLVESKEGVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK F+ KY + + ++ D++KEV+++A ++ + C +R D L Sbjct: 59 PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDML 112 >gi|2231975|gb|AAB62169.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQ-----HLISPPYVIKPLKGG 136 G+ ASAL M+K Q ++ GV P+IL +N+ Q P KP + G Sbjct: 2 GVAASALCMNKWLLHQAAAAIGVQSAPTILLINQANQQEQIEAFIQTHGFPVFFKPNEAG 61 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 SS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 62 SSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112 >gi|193872862|gb|ACF23121.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V DFY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVVVMRQNAETAFRAIGGLGLSRCDF 96 >gi|322382667|ref|ZP_08056531.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153365|gb|EFX45788.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 125 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 S N+ ++PA + + ++Q A ++A+GC+G+SR D R + E+N PG Sbjct: 35 SENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQKNGR-IILNEVNTLPG 93 Query: 268 MTPVSIFPEMAAYAGYSFRELL 289 T S +P M A AG + L+ Sbjct: 94 FTVYSRYPRMMAAAGMTLSGLI 115 >gi|7157933|gb|AAF37346.1|AF170807_1 D-alanine:D-alanine ligase [Enterococcus raffinosus] Length = 125 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIA 193 SS+GI + + + + LQ + + + + L+EQ +D E+ V+G+ + T EI Sbjct: 1 SSVGITRAENREELQ-NALQEA-YRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEI- 57 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V + FY Y KY +PA IP ++ ++ + A A+ +G G+SR DF Sbjct: 58 VKEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFL 114 >gi|327334539|gb|EGE76250.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1] Length = 139 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%) Query: 166 LLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +++E+++ G EL G++ G L EI P Y Y Y+ + PA I Sbjct: 2 VVVEEFIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISD 60 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +A + + + GISR D + D R VF LE PGMT S+ P A Sbjct: 61 TAAQTATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAA 119 Query: 282 GYSFRELLLWMVEDAS 297 G E+ +V+D + Sbjct: 120 GLDLGEVCSRLVDDVA 135 >gi|83414143|dbj|BAE53862.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKIP ++ +++ A +A +A+G G+SR DF Sbjct: 64 PAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDF 96 >gi|193872884|gb|ACF23132.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|193873010|gb|ACF23195.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96 >gi|83414039|dbj|BAE53810.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414055|dbj|BAE53818.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414077|dbj|BAE53829.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414079|dbj|BAE53830.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872906|gb|ACF23143.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872908|gb|ACF23144.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872938|gb|ACF23159.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|37783473|gb|AAP41864.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASALS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASALSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|193872994|gb|ACF23187.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|13509015|emb|CAC35258.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ KE++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSKELKE 147 >gi|83415048|dbj|BAE53783.1| D-alanine:D-alanine ligase [Streptococcus infantis] gi|193872882|gb|ACF23131.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193873020|gb|ACF23200.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193873032|gb|ACF23206.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 96 Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDF 96 >gi|146095686|ref|XP_001467639.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania infantum JPCM5] gi|134072004|emb|CAM70704.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania infantum JPCM5] gi|322501642|emb|CBZ36724.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 687 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/233 (19%), Positives = 106/233 (45%), Gaps = 33/233 (14%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106 + P F + +F D + ++ +E + P ASA+S+ K SK+++ + GVP Sbjct: 89 IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISLMGSKSESKRIMEAAGVP 140 Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158 V P F + + + P +IK + GG G+ ++++ + + L +++ Sbjct: 141 VVPGYYGENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERPEDLAFMLESAKREAA 200 Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212 ++ D++++E+YV + C + D + F+ S + +Y + Sbjct: 201 NFFKDDRVILERYVKRPRHIECQIFFDKH--------GRGVFFFERDCSVQRRYQKVLEE 252 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 P + +++ + + +A A +A+G G +F+FD + +++E+N + Sbjct: 253 APAP-HLSMEMRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304 >gi|83414049|dbj|BAE53815.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414051|dbj|BAE53816.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414057|dbj|BAE53819.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414059|dbj|BAE53820.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414065|dbj|BAE53823.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414095|dbj|BAE53838.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414097|dbj|BAE53839.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193873058|gb|ACF23219.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873062|gb|ACF23221.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873064|gb|ACF23222.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873066|gb|ACF23223.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAIMRRNAETAFRAIGGLGLSRCDF 96 >gi|193873014|gb|ACF23197.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V DFY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 P KI D+ +++ A A +AIG G+SR DF Sbjct: 64 PTKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|32477963|ref|NP_870957.1| D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1] gi|32448520|emb|CAD78035.1| probable D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1] gi|327539377|gb|EGF25995.1| D-alanine-D-alanine ligase [Rhodopirellula baltica WH47] Length = 341 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 24/265 (9%) Query: 46 LAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 L + +P++ + +L +G D V + LEL++ PY+ LS DK SK+++ Sbjct: 64 LQNFQPNITYMLLEEFYGVVTYDFAVISYLELMQQPYSGCNPRGLMLSKDKALSKKLLMY 123 Query: 103 CGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSS 158 + ++ N + + P +K +S GI ++ D+++ + Sbjct: 124 HRIATPRFAVFPNGRAVRRPKKLEFPLFVKSTIEDASFGIAQASIVHNDEALAERVTFLH 183 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-------------EIAVPKSDFYSYELK 205 GD +++EQY++G EL GVMG+ L VT E A + ++ K Sbjct: 184 EKTGGD-VIVEQYIEGRELYVGVMGNTRL-VTFPAWEMDFGKMPDESARIATSRVKWDRK 241 Query: 206 YSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 Y + A+ ++ K + +L ++A+ G +R D +V+ +E N Sbjct: 242 YQEKHDITCHAAEGLTEVQQKHIAKLCKRVYRALHMSGYARMDLRMTATG-EVYVIEANA 300 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289 P + F E A AG + L+ Sbjct: 301 NPNIEYGEDFAESAEAAGIPYESLI 325 >gi|193873040|gb|ACF23210.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI ++ ++R A A +AIG G+SR DF Sbjct: 64 PAKISDNVVAVMRRNAEAAFRAIGGLGLSRCDF 96 >gi|83414125|dbj|BAE53853.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] gi|83414135|dbj|BAE53858.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKIP ++ +++ A A +A+G G+SR DF Sbjct: 64 PAKIPEEVVSLMRQNAETAFRALGGLGLSRCDF 96 >gi|2231981|gb|AAB62172.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 119 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 8/113 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGG 136 G+ ASAL M+K Q ++ GV P+IL+ Q + + P KP + G Sbjct: 2 GVAASALCMNKWLLHQAAATIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEAG 61 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 SS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 62 SSKGITKVTCVEEIAPALKE--AFAYCSAVLLQKNIAGVEIGCGILGNDSLTV 112 >gi|213864771|ref|ZP_03386890.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 176 ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAF 232 E+ C V+G+ + + V SDFY+Y+ KY + V+ PA I +I +++ +A Sbjct: 2 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 61 Query: 233 LAHQAIGCRGISRSDFLFDP 252 A+Q +GC G++R D P Sbjct: 62 QAYQTLGCAGMARVDVFLTP 81 >gi|157873596|ref|XP_001685305.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania major] gi|68128376|emb|CAJ08598.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania major strain Friedlin] Length = 687 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 30/207 (14%) Query: 80 THSGIL-----ASALSM--DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPY 128 T SGI ASA+S+ K SK+++ + GVPV P F + + + P Sbjct: 107 TRSGIEFIGPPASAISLMGSKSESKRIMEAAGVPVVPGYYGENQNVSFLAEEANRVGFPI 166 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMG 183 +IK + GG G+ ++++ + L +++++ D++++E+YV + C + Sbjct: 167 LIKAVSGGGGKGMKIVERPEDFAFMLESAKREAANFFKDDRVILERYVKRPRHIECQIFF 226 Query: 184 DASLDVTEIAVPKSDFY-----SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 D + F+ S + +Y + P + +++ + + +A A +A+ Sbjct: 227 DKH--------GRGVFFFERDCSVQRRYQKVLEEAPAP-HLSMEMRQRIGEVALQAAKAV 277 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265 G G +F+FD + +++E+N + Sbjct: 278 GYVGAGTVEFIFDTSTGDFYFMEMNTR 304 >gi|83414145|dbj|BAE53863.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414151|dbj|BAE53866.1| D-alanine:D-alanine ligase [Streptococcus gordonii] Length = 96 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA++P + +++ A +A +AIG G+SR DF Sbjct: 64 PAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDF 96 >gi|83414191|dbj|BAE53886.1| D-alanine:D-alanine ligase [Streptococcus anginosus] gi|83414195|dbj|BAE53888.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G +A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96 >gi|83414181|dbj|BAE53881.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G +A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNKEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96 >gi|83414177|dbj|BAE53879.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNKGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96 >gi|256829553|ref|YP_003158281.1| hypothetical protein Dbac_1774 [Desulfomicrobium baculatum DSM 4028] gi|256578729|gb|ACU89865.1| protein of unknown function DUF201 [Desulfomicrobium baculatum DSM 4028] Length = 340 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 29/249 (11%) Query: 46 LAHLKPDLAFNVL---HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 LAH +P++ FN++ HG L A+ P+T + + AL+ DK +++++ + Sbjct: 58 LAHRRPNVIFNLVESCHGLASLACLAPALFRKAGFPFTGADEGSMALAGDKALARRLLHA 117 Query: 103 CGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIPLDLL 155 G+PV P + + Q + P Y+IK +SLG+ +V ++ + L + Sbjct: 118 AGLPVPPGVTMGEL----QRGVFPGPGTYIIKARFEDASLGLGPDCVVDVREGAELLAAM 173 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---------AVPKSDFYSYELKY 206 + + G + E YV G E ++ + V ++ A+P Y K+ Sbjct: 174 REFAPRMGGDCVAEGYVRGREFNLALLAEPGGGVRDLPLAEMVFDSAMPGPAILHYAAKW 233 Query: 207 SSLNSTHVLPAKI-----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + + D+ E++R+ + G +R DF +++ ++ Sbjct: 234 DQGSADYAASVRSFDLDGEEDLVLEMKRIGRACWELFNLAGYARIDFRVAGPG-QIYVID 292 Query: 262 INVQPGMTP 270 +N P +TP Sbjct: 293 VNPNPCITP 301 >gi|108762853|ref|YP_634088.1| D-ala D-ala ligase domain-containing protein [Myxococcus xanthus DK 1622] gi|108466733|gb|ABF91918.1| D-ala D-ala ligase domain protein [Myxococcus xanthus DK 1622] Length = 376 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 27/298 (9%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAI 71 +L+ G A L G ++ +D L +PDL N+ L + + + + Sbjct: 53 ALNRGDTLAEPLAIEGDRLDFMDT-------LRRCQPDLVVNLCESLAADSRGEMAIPCL 105 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVI 130 L++L + YT S L+ L++ K ++K+V+++ GV P +V R D+ + P P ++ Sbjct: 106 LDVLGLAYTGSSALSLGLALHKPKAKEVLTARGVSTPPFHVVERLE-DALAVDLPWPLIV 164 Query: 131 KPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---A 185 KP + +S+G+ + +++ + + L+EQ++ G E+ ++G+ Sbjct: 165 KPAREDASMGVTSESVVHERAALVRACDAVLREFHQPALVEQFIPGREIYVPLLGNRPRQ 224 Query: 186 SLDVTEIAVPKS-----DFYSYELKYSSLNSTHVLPA----KIPLDIYKEVQRLAFLAHQ 236 +L +TEI ++ + SY K+ + ++ + ++ ++ ++A A Sbjct: 225 ALPLTEIVFGRTFEDRPNIVSYNAKWEAASAEYRDTTSGLCRLDANLESRCVQVALEAFA 284 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C+ R D P + ++IN + P + F + A AG + L +VE Sbjct: 285 ALDCQDYGRVDLRVSPEGVP-YVIDINPNCDLHPSAGFAKAALAAGMDYPALASRLVE 341 >gi|313192183|emb|CBX19951.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 124 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+ +++ +++ +L++ ++ +++IE+Y+ G E+TC ++ L V I PK Sbjct: 1 SSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIEGKMLPVLAIK-PK 57 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 F+ KY + + K+ D++KEV+++A ++ + C +R D L Sbjct: 58 GKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--DNI 114 Query: 257 VFWLEINVQP 266 + LE+N P Sbjct: 115 PYVLEVNTLP 124 >gi|84501852|ref|ZP_01000010.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola batsensis HTCC2597] gi|84389847|gb|EAQ02481.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola batsensis HTCC2597] Length = 489 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + +H +G E+ A LE + + A L DK+R++ V G PV PS + Sbjct: 77 DAVHPGYGFLSENAGFVAALEEAGVTFVGPTSQAIDLMGDKVRARAFVEERGFPVAPSAI 136 Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GD-Q 165 + +D + P +IKP GG G+ V+++D ++ ++ + GD + Sbjct: 137 EDDDPATFVDRARAVGYPLLIKPSAGGGGKGMRVVREDSALETEIETARREGERYFGDGR 196 Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 L +E+Y++ + VMGD +V + S + ++ + PA P + Sbjct: 197 LFVERYIESPRHIEVQVMGDGQGNVVHFWEREC---SIQRRFQKIIEETPSPALSP-EQR 252 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +E+ A +A+ RG +F++ ++LE+N + Sbjct: 253 QEICETAAGIARAVKYRGAGTVEFIY-ARDGAFYFLEMNTR 292 >gi|83414127|dbj|BAE53854.1| D-alanine:D-alanine ligase [Streptococcus sanguinis SK36] gi|83414129|dbj|BAE53855.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] gi|83414141|dbj|BAE53861.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKIP ++ +++ A A +A+G G+SR DF Sbjct: 64 PAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96 >gi|83414111|dbj|BAE53846.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414117|dbj|BAE53849.1| D-alanine:D-alanine ligase [Streptococcus oralis] Length = 96 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMAI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|15430602|dbj|BAB64428.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V A+ D F+ YE KY +++ +PA +P I +V+ A L Sbjct: 67 LTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETKVKEQAQL 115 >gi|83414205|dbj|BAE53893.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus] gi|83415066|dbj|BAE53792.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus] Length = 96 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + ++LIE V+ E+ G++G+A + T E+ V FY Y+ KY T +PA Sbjct: 8 YDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAH 66 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 I I +E++ A A +AIG G+SR DF Sbjct: 67 IDSSIMEEMRGYATTAFRAIGGCGLSRCDF 96 >gi|193872936|gb|ACF23158.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA+I D+ ++R A A +AIG G+SR DF Sbjct: 64 PARISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96 >gi|193873004|gb|ACF23192.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V+ E+ G++G DA + V FY Y+ KY T +P Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDYDAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AKI D+ +++ A A +AIG G+SR DF Sbjct: 65 AKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|37783469|gb|AAP41862.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|83415054|dbj|BAE53786.1| D-alanine:D-alanine ligase [Streptococcus peroris] Length = 96 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V+ E+ G++G D + V FY YE KY T +P Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A +AIG G+SR DF Sbjct: 65 AKLSDDVIATMRKNAETAFRAIGGLGLSRCDF 96 >gi|15430596|dbj|BAB64425.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V A+ D F+ YE KY +++ +PA +P I V+ A L Sbjct: 67 LTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETRVKEQAQL 115 >gi|193872864|gb|ACF23122.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872888|gb|ACF23134.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A +A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96 >gi|193872962|gb|ACF23171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 96 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A +A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96 >gi|256419162|ref|YP_003119815.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM 2588] gi|256034070|gb|ACU57614.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM 2588] Length = 353 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 40/231 (17%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK + +++ +P+ P+IL+N+ + D Q S P V KP++G S G+ V+ + Sbjct: 120 DKWTTNKLLQKNNLPIPPAILINKDNLHDYQLHFSFPAVAKPIRGRGSDGVQVVDTADGL 179 Query: 151 PLDLLQSSSWN-HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS-------- 201 L + + + +G + +E+++ G E+T VM + +I K +++S Sbjct: 180 HKVLKEMFAEDKYGTAVYVEKFLPGREVTITVMPPGKYMIRDICQEKINYWSLPPVERFN 239 Query: 202 -------YELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 Y + +N++ VL PA I L K+ + A L +G + R D Sbjct: 240 HEDGVAPYNGTVAVVNNSKVLDDAQLQSPAIITL--CKQCESAAAL----VGAKAPVRID 293 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEM---------AAYAGYSFRELL 289 D R F ++N++P MT S M A G++F +LL Sbjct: 294 CRQDEQGR-YFLFDLNMKPNMTGASRPHRMDQDSLSALAARKIGWTFADLL 343 >gi|83415044|dbj|BAE53781.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872926|gb|ACF23153.1| D-alanine-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|193873034|gb|ACF23207.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A +A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96 >gi|83414175|dbj|BAE53878.1| D-alanine:D-alanine ligase [Streptococcus anginosus] gi|83414185|dbj|BAE53883.1| D-alanine:D-alanine ligase [Streptococcus anginosus] gi|83414189|dbj|BAE53885.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + + E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAK+ D+ +++ A A AIG G+SR DF Sbjct: 64 PAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96 >gi|83414133|dbj|BAE53857.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] gi|83414139|dbj|BAE53860.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKIP ++ +++ A A +A+G G+SR DF Sbjct: 64 PAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDF 96 >gi|83415078|dbj|BAE53798.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|193873070|gb|ACF23225.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ ++ T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRILVEQGVNAREIEVGLLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83415074|dbj|BAE53796.1| D-alanine:D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V DFY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193872988|gb|ACF23184.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVIAVMRQYAETAFRAIGGLGLSRCDF 96 >gi|2231977|gb|AAB62170.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135 G+ SAL M+K Q ++ GV P+IL+ + Q I P KP + Sbjct: 2 GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 61 GSSKGITKVTCVEEIASAL--KKAFTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112 >gi|2231979|gb|AAB62171.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 120 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135 G+ SAL M+K Q ++ GV P+IL+ + Q I P KP + Sbjct: 2 GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 61 GSSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112 >gi|193873024|gb|ACF23202.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++R + A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRRNSETAFRAIGGLGLSRCDF 96 >gi|2231983|gb|AAB62173.1| vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 122 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135 G+ SAL M+K Q ++ GV P+IL+ + Q I P KP + Sbjct: 2 GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 61 GSSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112 >gi|182413979|ref|YP_001819045.1| D-alanine--D-alanine ligase domain-containing protein [Opitutus terrae PB90-1] gi|177841193|gb|ACB75445.1| D-alanine--D-alanine ligase domain protein [Opitutus terrae PB90-1] Length = 339 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 26/263 (9%) Query: 49 LKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SC 103 +PD+ FN+ N D + + L + +IP+T G L K SK+++S Sbjct: 68 FQPDVVFNLADQFRNNRAFDQHIVSFLAMSDIPFTGCGSTGLTLCKHKGVSKKILSYHRI 127 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSW 160 P I R + + L P ++KPLK +S GI ++ D+ + ++ Sbjct: 128 HTPAFAIIPRGRRAVRPKRL-KFPILVKPLKEEASYGIAQASFVETDEQF-RERVEFVHQ 185 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDV--------TEIAVPKSDFYSYELKY-SSLNS 211 + + E+Y++G EL ++G+ L V E+ + +Y+ K+ + + Sbjct: 186 KFNNDAIAEEYIEGRELYVSLLGNHRLQVFPIRELVFREVPPDEPKIATYKAKWDEAYRA 245 Query: 212 THVLPAKIPLD----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQP 266 L + D + ++++ ++ + G +R D + +R W +E N P Sbjct: 246 RWGLENRFVEDLEPALVRKIEATCRRIYRLLTIDGYARLDLRLN--ARNELWFIEANANP 303 Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289 + P F A AG S+ +L+ Sbjct: 304 ILAPDEDFALSAGKAGLSYPQLI 326 >gi|83414203|dbj|BAE53892.1| D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVPFYDYEAKYIDNKITMSIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A +AIG G++R DF Sbjct: 65 AKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96 >gi|262199309|ref|YP_003270518.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Haliangium ochraceum DSM 14365] gi|262082656|gb|ACY18625.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Haliangium ochraceum DSM 14365] Length = 410 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 6/88 (6%) Query: 92 DKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 DK+ K+++ S GVPV C S + + PYV+KP +GG S+G+ VI+ Q Sbjct: 112 DKLIMKRLLRSAGVPVAACASAETPFDILAFEDSYGYPYVVKPRRGGGSVGVHVIRTRQQ 171 Query: 150 IPLDLLQ---SSSWNHGDQLLIEQYVDG 174 + +LL+ S S+ L++EQY++G Sbjct: 172 LQ-ELLEGGLSHSFESDSDLMLEQYIEG 198 >gi|83414201|dbj|BAE53891.1| D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMSIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A +AIG G++R DF Sbjct: 65 AKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96 >gi|83415040|dbj|BAE53779.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEPKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKIP ++ +++ A A +A+G G+SR DF Sbjct: 64 PAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96 >gi|193873038|gb|ACF23209.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414147|dbj|BAE53864.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414149|dbj|BAE53865.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414153|dbj|BAE53867.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414155|dbj|BAE53868.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414157|dbj|BAE53869.1| D-alanine:D-alanine ligase [Streptococcus gordonii] gi|83414159|dbj|BAE53870.1| D-alanine:D-alanine ligase [Streptococcus gordonii] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA++P + +++ A A +AIG G+SR DF Sbjct: 64 PAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96 >gi|193873018|gb|ACF23199.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96 >gi|13509011|emb|CAC35256.1| D-alanin-D-alanin ligase [Campylobacter jejuni] gi|13509027|emb|CAC35264.1| D-alanin-D-alanin ligase [Campylobacter jejuni] gi|37783475|gb|AAP41865.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV +V R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVL 215 E KY S + + L Sbjct: 124 EQKYLSFSGHNEL 136 >gi|193872954|gb|ACF23167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872956|gb|ACF23168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872968|gb|ACF23174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 96 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414119|dbj|BAE53850.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872982|gb|ACF23181.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872984|gb|ACF23182.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872986|gb|ACF23183.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISNDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193872858|gb|ACF23119.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISNDVIAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|13509023|emb|CAC35262.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|193873052|gb|ACF23216.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193873054|gb|ACF23217.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96 >gi|193873036|gb|ACF23208.1| D-alanine-D-alanine ligase [Streptococcus infantis] Length = 96 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96 >gi|13509009|emb|CAC35255.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|193872860|gb|ACF23120.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|15430586|dbj|BAB64420.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] gi|15430588|dbj|BAB64421.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] gi|15430594|dbj|BAB64424.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] gi|15430604|dbj|BAB64429.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V A+ D F+ +E KY +++ +PA +P I +V+ A L Sbjct: 67 LTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115 >gi|193872958|gb|ACF23169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872960|gb|ACF23170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 96 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193873002|gb|ACF23191.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414031|dbj|BAE53806.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83414035|dbj|BAE53808.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae] gi|83414083|dbj|BAE53832.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414087|dbj|BAE53834.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414089|dbj|BAE53835.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414091|dbj|BAE53836.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414105|dbj|BAE53843.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414113|dbj|BAE53847.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414115|dbj|BAE53848.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414121|dbj|BAE53851.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414123|dbj|BAE53852.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83415046|dbj|BAE53782.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae] gi|193872878|gb|ACF23129.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872894|gb|ACF23137.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872910|gb|ACF23145.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872912|gb|ACF23146.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872970|gb|ACF23175.1| D-alanine-D-alanine ligase [Streptococcus sp. SK597] gi|193872972|gb|ACF23176.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873030|gb|ACF23205.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae] gi|193873048|gb|ACF23214.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae ATCC BAA-960] gi|193873050|gb|ACF23215.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae] gi|193873080|gb|ACF23230.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873082|gb|ACF23231.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414033|dbj|BAE53807.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415042|dbj|BAE53780.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415070|dbj|BAE53794.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415072|dbj|BAE53795.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415080|dbj|BAE53799.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|83415082|dbj|BAE53800.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|193872854|gb|ACF23117.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872866|gb|ACF23123.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872872|gb|ACF23126.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872874|gb|ACF23127.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193872880|gb|ACF23130.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872896|gb|ACF23138.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872898|gb|ACF23139.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872900|gb|ACF23140.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872976|gb|ACF23178.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872990|gb|ACF23185.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872992|gb|ACF23186.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872996|gb|ACF23188.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872998|gb|ACF23189.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873000|gb|ACF23190.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873006|gb|ACF23193.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873012|gb|ACF23196.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873022|gb|ACF23201.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873026|gb|ACF23203.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873072|gb|ACF23226.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873074|gb|ACF23227.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873078|gb|ACF23229.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|332707489|ref|ZP_08427535.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L] gi|332353747|gb|EGJ33241.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L] Length = 135 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + K VQ +A HQA+GCR S DF DP + F LE + +P S+ MA +G Sbjct: 54 VTKPVQEVAKRCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVIASMAKASG 112 Query: 283 YSFRELLLWMVEDA 296 S ELL+ +++ Sbjct: 113 ISVNELLMIAIDET 126 >gi|213024194|ref|ZP_03338641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 77 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +Q L A +A+GC G R D + D + + LE N PGMT S+ P A AG SF Sbjct: 8 LQSLVLQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 66 Query: 287 ELLLWMVE 294 +L++ ++E Sbjct: 67 QLVVRILE 74 >gi|193872890|gb|ACF23135.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193872942|gb|ACF23161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872944|gb|ACF23162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872946|gb|ACF23163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872948|gb|ACF23164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872950|gb|ACF23165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872952|gb|ACF23166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872964|gb|ACF23172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193872966|gb|ACF23173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193873042|gb|ACF23211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193873044|gb|ACF23212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] gi|193873088|gb|ACF23234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193872980|gb|ACF23180.1| D-alanine-D-alanine ligase [Streptococcus mitis] gi|193873008|gb|ACF23194.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|50082939|gb|AAT70091.1| D-alanyl-D-alanine ligase [Rhodococcus sp. RE-S7B] Length = 126 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVP 195 G+ + ++ +P L S++ + ++LIE+ V G E+ C VMG+ + +V + + Sbjct: 1 GVSKVTREDELPNAL--SAARQYDSKVLIEEAVAGSEIGCAVMGELFGLITGEVDRVDLS 58 Query: 196 KSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251 F ++ + S NST ++PA I + + VQ A ++ +GC+G++R D FL D Sbjct: 59 HGFFRIHQEDSPETGSENSTFIVPADISDESRRLVQETAKAIYRTLGCKGLARVDMFLTD 118 >gi|13509029|emb|CAC35265.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVL 215 E KY S + + L Sbjct: 124 EQKYLSFSGHNEL 136 >gi|83414045|dbj|BAE53813.1| D-alanine:D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414183|dbj|BAE53882.1| D-alanine:D-alanine ligase [Streptococcus anginosus] gi|83414187|dbj|BAE53884.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + + E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAK+ D+ +++ A A AIG G++R DF Sbjct: 64 PAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96 >gi|187735236|ref|YP_001877348.1| hypothetical protein Amuc_0730 [Akkermansia muciniphila ATCC BAA-835] gi|187425288|gb|ACD04567.1| conserved hypothetical protein [Akkermansia muciniphila ATCC BAA-835] Length = 341 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 124/290 (42%), Gaps = 37/290 (12%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYT 80 A++D G+ V + + + A D F++++ F + + + E +++PY Sbjct: 51 KAIQDIGYDV--VSSSKPYSVQFAKGNVDYVFSLMN-RFAMSRPEIFISSYCEFIQVPYL 107 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 + A++ DK +K V S + V I L + +Q PY +K G +S Sbjct: 108 GAPPNIRAIAEDKFLTKMVFRSLELNVPEGIGLSGEKGIPAQAPFPGPYFVKKRFGAASG 167 Query: 140 GIIVIKKDQSIPLDLLQSSSWN-----------HGDQLLIEQYVDGIELTCGVMGDASLD 188 GI ++ SI SSW G ++L+EQY +GI++T V+G + Sbjct: 168 GI----REDSI------CSSWKAVGSCARRLMEEGHEVLVEQYCEGIDVTVPVLGGENPV 217 Query: 189 VTEIAVPKSD----FYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + PKSD + +LK + L V + DI +V+++ A+G Sbjct: 218 ILGYVQPKSDKPGSIITEDLKLHDHLGYQLVSVQDMEQDIASDVRKI----WSALGPMDY 273 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R D+ D + + LE+N+ + AA GYS +LL +++ Sbjct: 274 FRIDYRIDFETGERRILEMNICCHLGKSGSICLAAAEHGYSQADLLKYII 323 >gi|158521902|ref|YP_001529772.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3] gi|158510728|gb|ABW67695.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3] Length = 527 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 124/306 (40%), Gaps = 41/306 (13%) Query: 16 LSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69 LS +A + AL D G++ + D ++ L L PDL FN++ G+ L+ Sbjct: 34 LSQVEAVSGALSDLGYEPVPLACDLDLEALRRDLVSLCPDLVFNLVESLNGQGRLIHLAP 93 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMD-SQ 121 +LE + IPYT S + +K +K +S GV PS + + R ++ ++ Sbjct: 94 ILLEAMGIPYTGSSAYVIYRTSNKTAAKDHMSQWGV-ATPSWIGPASLLRIQRTRVNPAE 152 Query: 122 HLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L + ++IK + +S G+ +V L+ L+ S G E Y+ G E Sbjct: 153 RLPNQSWIIKSVWEHASFGLDENAVVCPDTLGDILNTLKQRSPALGGDCFAEHYIPGREF 212 Query: 178 TCGVMGDAS----LDVTEIAV-----PKSDFYSYELKY--------SSLNSTHVLPAKIP 220 ++ +A L V EI K Y K+ +++ S + P Sbjct: 213 NVALIEEAGKPRVLPVAEIRFENYEGEKPAIVCYRAKWEPGSFECLNTVRSFEFPDSDGP 272 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAA 279 L + V +A +G +R DF D W LE+N P ++P + F Sbjct: 273 L--LEGVTSIARHCWDLFHLKGYARVDFRVDDCGNP--WVLEVNANPCLSPDAGFAAAME 328 Query: 280 YAGYSF 285 AG S+ Sbjct: 329 QAGISY 334 >gi|193872940|gb|ACF23160.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872974|gb|ACF23177.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414193|dbj|BAE53887.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G +A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A A G G+SR DF Sbjct: 65 AKLSEDVIATMRQYAEKAFHAFGGVGLSRCDF 96 >gi|193872868|gb|ACF23124.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V+ E+ G++G+ + T V FY Y+ KY T +P Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGRIVKDVAFYDYDAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AKI D+ +++ A A +AIG G+SR DF Sbjct: 65 AKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193873084|gb|ACF23232.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V+ E+ G++G D + V DFY Y+ KY T +P Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSALPGEVVKDVDFYDYDAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AKI D +++ A A +AIG G+SR DF Sbjct: 65 AKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414197|dbj|BAE53889.1| D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G+ G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLFGNERAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ ++ A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96 >gi|300693172|ref|YP_003749145.1| hypothetical protein RPSI07_mp0137 [Ralstonia solanacearum PSI07] gi|299075209|emb|CBJ34496.1| conserved hypothethical protein [Ralstonia solanacearum PSI07] Length = 388 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 44/242 (18%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS-------------QHLISPPYVIKPLKGGSS 138 DK + + G+PV S LV R S + ++ P V+KP++G S Sbjct: 139 DKYATNAHLRRHGLPVAASSLVGREACGSLPPLEALREDDLQRAGLAFPLVVKPVRGRGS 198 Query: 139 LGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV----- 189 G+ +++ Q LL SS++ GD L+ E ++ G ELT VM A L Sbjct: 199 EGVTLVRDLPSMQRAAAGLLDSSAF--GDALIAETFLAGEELTVTVMPRQADLPAAFSSE 256 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI-------YKEVQRLAFLAHQAIGCR 241 T A+P +++ + N + V + L + + + R LA+ +G R Sbjct: 257 TASALPPVRRFNHVDGVAPYNGAVAVTRNSVALSVEASMAPEARALVRACLLAYDVVGAR 316 Query: 242 GISRSDFLFDPLSRKVFWL-EINVQPGMTPV---------SIFPEMAAYAGYSFRELLLW 291 R D D +R V+ L ++N++P MT S+ A G+ +RELL+ Sbjct: 317 APIRIDCRAD--ARGVYQLFDLNMKPNMTGAGRPGREDQDSLSALAARAVGWDYRELLVR 374 Query: 292 MV 293 M+ Sbjct: 375 MM 376 >gi|83414061|dbj|BAE53821.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872904|gb|ACF23142.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193872934|gb|ACF23157.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAIMRQNAETAFRAIGGLGLSRCDF 96 >gi|13509025|emb|CAC35263.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ ++ P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDCTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|83414199|dbj|BAE53890.1| D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G+ G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ ++ A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96 >gi|83414037|dbj|BAE53809.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414041|dbj|BAE53811.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414043|dbj|BAE53812.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414053|dbj|BAE53817.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414063|dbj|BAE53822.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414069|dbj|BAE53825.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414071|dbj|BAE53826.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414075|dbj|BAE53828.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872922|gb|ACF23151.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872924|gb|ACF23152.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873046|gb|ACF23213.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193873056|gb|ACF23218.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96 >gi|325959933|ref|YP_004291399.1| ATP-grasp fold domain-containing protein [Methanobacterium sp. AL-21] gi|325331365|gb|ADZ10427.1| ATP-grasp fold domain protein, DUF201-type [Methanobacterium sp. AL-21] Length = 379 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 38/253 (15%) Query: 68 VQAILELLE----IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMD 119 V + E+LE IP SG+ A+++ DK+++KQ + P N + Sbjct: 78 VAKMKEILEKDHGIPVASSGVKAASICADKIKTKQFFVDNSIE-TPEFFKLSKNNNANLL 136 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ L P V+K G GI ++ K + + + ++ D+ L E++++G E++ Sbjct: 137 TKLLSKSPVVLKQGSGQGGSGIKIVSKFEEV------GNYFDGFDETLAEKFLEGYEVSI 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA--KIPLDI--------YKEVQR 229 V+ + + V K +++N H L K PLDI +E+++ Sbjct: 191 EVLRWNGKTIPLVPVHKGK--------TTINGLHPLKKVKKAPLDIDGVDNDLNNEEIRK 242 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A + G + D +FD + K + +EIN +P T + AA Y +EL+ Sbjct: 243 IAIKIADTLNLEGTADIDLIFDMKTGKNYVIEINARPSGTR---YITGAATNVYIMQELV 299 Query: 290 LWM--VEDASCLR 300 + V D S LR Sbjct: 300 KMVSGVWDPSELR 312 >gi|310658734|ref|YP_003936455.1| hypothetical protein CLOST_1430 [Clostridium sticklandii DSM 519] gi|308825512|emb|CBH21550.1| protein of unknown function [Clostridium sticklandii] Length = 408 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +K + KQ+ +P +++ M+ + ++PPYVIKP+ G+ + + I Sbjct: 99 NKSKMKQIFEKNNIPTAKFRFISKNFMEEELSNLNPPYVIKPIDSQGQRGVYKLNTIEEI 158 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 D+ +++ + LIE+Y + E+T G + + L + I ++ F S K+ + Sbjct: 159 KTDIDSVLTFSRDNIALIEEYYESDEITVSGWVYNKKLKILTIT-DRNTFSSG--KHIGI 215 Query: 210 NSTHVLPAKIPLDIYKEVQRLA 231 +HV P+K YKE+ ++ Sbjct: 216 CKSHVFPSKYYDKYYKEIHDIS 237 >gi|83415058|dbj|BAE53788.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G++G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ +++ A A AIG G++R DF Sbjct: 65 AKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96 >gi|193872920|gb|ACF23150.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRILVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVAAVMRHNAETAFRAIGGLGLSRCDF 96 >gi|154342794|ref|XP_001567345.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 687 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 33/233 (14%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106 + P F + +F D + ++ +E + P ASA+S K SK+++ GVP Sbjct: 89 IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISAMGSKSESKRIMEVAGVP 140 Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158 V P + F + + P +IK + GG G+ ++++ + L +++ Sbjct: 141 VVPGYYGDNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAT 200 Query: 159 SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212 ++ D++++E+YV + C + D + F+ S + +Y + Sbjct: 201 NFFKDDRVILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEE 252 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 P + ++ + + +A A +A+G G +F+FD + +++E+N + Sbjct: 253 APAP-HLSMETRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304 >gi|37783477|gb|AAP41866.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ +S P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNGL---IEADLSEELKE 147 >gi|322505476|emb|CAM42777.2| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 687 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 33/233 (14%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106 + P F + +F D + ++ +E + P ASA+S K SK+++ GVP Sbjct: 89 IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISAMGSKSESKRIMEVAGVP 140 Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158 V P + F + + P +IK + GG G+ ++++ + L +++ Sbjct: 141 VVPGYYGDNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAT 200 Query: 159 SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212 ++ D++++E+YV + C + D + F+ S + +Y + Sbjct: 201 NFFKDDRVILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEE 252 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 P + ++ + + +A A +A+G G +F+FD + +++E+N + Sbjct: 253 APAP-HLSMETRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304 >gi|153954719|ref|YP_001395484.1| hypothetical protein CKL_2101 [Clostridium kluyveri DSM 555] gi|219855183|ref|YP_002472305.1| hypothetical protein CKR_1840 [Clostridium kluyveri NBRC 12016] gi|146347577|gb|EDK34113.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219568907|dbj|BAH06891.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 401 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKP 132 EI H I A+ L++DK++ K+V+ G+ V P +N D + I+ P VIKP Sbjct: 87 EIGVKHIPIEAACLTVDKLKMKEVLKKAGINVPPFRKINSLN-DLKKFINEYAYPVVIKP 145 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTE 191 + + G++ + + + L +S S + +++E++++G ++ T G+M + +T Sbjct: 146 VDNSGARGVLRLTEAVDLTWALNESKSNSRSGDVMVEKFLEGNQISTEGIMYEDEFYITG 205 Query: 192 IA 193 A Sbjct: 206 FA 207 >gi|83414073|dbj|BAE53827.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414093|dbj|BAE53837.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872856|gb|ACF23118.1| D-alanine-D-alanine ligase [Streptococcus oralis] gi|193872902|gb|ACF23141.1| D-alanine-D-alanine ligase [Streptococcus infantis] gi|193872916|gb|ACF23148.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96 >gi|322494078|emb|CBZ29376.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 687 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 33/233 (14%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106 + P F + +F D + ++ +E + P ASA+S+ K SK+++ + GVP Sbjct: 89 IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISLMGSKSESKRIMEAAGVP 140 Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158 V P F + + + P +IK + GG G+ ++++ + L ++ Sbjct: 141 VVPGYYGENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERLEDFAFMLASAKREAV 200 Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212 ++ D++++E+YV + C + D + F+ S + +Y + Sbjct: 201 NFFKDDRVILERYVKRPRHIECQIFFDKH--------GRGVFFFERDCSVQRRYQKVLEE 252 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 P + +++ + + +A A +A+G G +F+FD + +++E+N + Sbjct: 253 APAP-HLSMEMRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304 >gi|119486250|ref|ZP_01620309.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106] gi|119456463|gb|EAW37593.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106] Length = 291 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 22/228 (9%) Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +AL+ +K +++ VV++ GV V + + + PP+++KP +SLG+ +++ Sbjct: 49 TALATNKAQTRSVVAASGVRVAKA---QQLRPGDTLTMQPPFIVKPNSEDNSLGVTLVQN 105 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV--------TEIAVPKS 197 I L + + LL+E Y+ G E+ V+ + L V TE ++ Sbjct: 106 PDQITEAL--RIGFELDEILLVEDYIPGREIRVAVVEREGKLCVLPMIEYLFTEEHPIRT 163 Query: 198 DFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 L+ + V PA + ++++++ A AH A+GCR S DF Sbjct: 164 VQDKLHLQSDGMPEKQPEKPVAKPVCPANVAPELFEKLANAAKNAHIALGCRDYSLYDFR 223 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + + LE + +S+ M G + ++ L + +A+ Sbjct: 224 VHAETHEPYMLEAGLFWSFGKISMISRMLIVDGQNLEDVALELWREAA 271 >gi|13509007|emb|CAC35254.1| D-alanin-D-alanin ligase [Campylobacter jejuni] gi|13509013|emb|CAC35257.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ ++ P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|222522065|gb|ACM62807.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] Length = 118 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K +SI L + + + ++LIEQ V E+ G++G+ Sbjct: 2 PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ + FY Y+ KY + +PA I DI +++ A A +AIG G Sbjct: 59 KVTSTLPGEV-IKDVAFYDYQAKYIDNKISMAIPAAINEDITSQMRYFAEQAFKAIGACG 117 Query: 243 I 243 + Sbjct: 118 L 118 >gi|193872978|gb|ACF23179.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHV 214 ++ + ++L+EQ V+ E+ G++G S DV V FY Y+ KY T Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLG--SYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMD 62 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +PAKI D+ +++ A A +AIG G+SR DF Sbjct: 63 IPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|193872928|gb|ACF23154.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAIMRHNAQTAFRAIGGLGLSRCDF 96 >gi|83415052|dbj|BAE53785.1| D-alanine:D-alanine ligase [Streptococcus gordonii] Length = 96 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V E+ G++G D + V FY Y+ KY T +P Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNTDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 A++P + +++ A A +AIG G+SR DF Sbjct: 65 AQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96 >gi|83414085|dbj|BAE53833.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414099|dbj|BAE53840.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414101|dbj|BAE53841.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414103|dbj|BAE53842.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193872930|gb|ACF23155.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAIMRHNAETAFRAIGGLGLSRCDF 96 >gi|256380220|ref|YP_003103880.1| carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema mirum DSM 43827] gi|255924523|gb|ACU40034.1| Carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema mirum DSM 43827] Length = 643 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145 DK+++K ++ GVPV P M L++ P ++KP GG G+ +++ Sbjct: 117 DKIQAKLTAAAAGVPVVPGR--AEPGMGDDELVAAATEIGFPVLVKPSAGGGGKGMRLVR 174 Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200 + +++ ++ + D LL+E+YV D + V+ DA + + Sbjct: 175 EAAGLREAVESARREARASFGDDALLVERYVSDPRHIEIQVLADAHGTTVHLGERECSLQ 234 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 K + +L A D + + R A LA +++G G +F+ D + + F+L Sbjct: 235 RRHQKVIEEAPSPLLDA----DAREAMGRSAVLAAESVGYVGAGTVEFIVDGTTGEHFFL 290 Query: 261 EINVQ 265 E+N + Sbjct: 291 EMNTR 295 >gi|13509019|emb|CAC35260.1| D-alanin-D-alanin ligase [Campylobacter jejuni] gi|37783471|gb|AAP41863.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ ++ P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVL 215 E KY S + + L Sbjct: 124 EQKYLSFSGHNEL 136 >gi|83415076|dbj|BAE53797.1| D-alanine:D-alanine ligase [Streptococcus mitis] gi|193873068|gb|ACF23224.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|15430592|dbj|BAB64423.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V F+ +E KY +++ +PA +P I +V+ A L Sbjct: 67 LTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115 >gi|193872914|gb|ACF23147.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA+I D+ +++ A A +AIG G+SR DF Sbjct: 64 PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|21307673|gb|AAL07283.1| ligase VanB2 [Streptococcus lutetiensis] gi|21307675|gb|AAL07284.1| ligase VanB2 [Streptococcus gallolyticus] gi|21307677|gb|AAL07285.1| ligase VanB2 [Streptococcus gallolyticus] Length = 145 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 9/147 (6%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK + + + G+ V ++++ ++ P +KP + GSS G V K + + Sbjct: 1 DKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEE 58 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---EL 204 L+ ++ + ++LIEQ + G E+ C VMG+ +V +I + F + E Sbjct: 59 LNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEP 118 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + S N+ +PA IP++ VQ A Sbjct: 119 EKGSENAMITVPADIPVEERNRVQETA 145 >gi|83414047|dbj|BAE53814.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|193873060|gb|ACF23220.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA+I D+ +++ A A +AIG G+SR DF Sbjct: 64 PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|255037030|ref|YP_003087651.1| alpha-L-glutamate ligase, RimK family [Dyadobacter fermentans DSM 18053] gi|254949786|gb|ACT94486.1| alpha-L-glutamate ligase, RimK family [Dyadobacter fermentans DSM 18053] Length = 300 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 108/234 (46%), Gaps = 28/234 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125 A++ LE+ + + + A+ S DK+RS QV++ G+ + +++ ++ HL+ Sbjct: 75 AVVRQLELMKVFTTVKSQAILRSRDKLRSMQVLAKAGIDIPKTVIAKNPAQVNELIHLVG 134 Query: 126 -PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGV 181 PP VIK L+G +G+++ + ++ + + + LI++Y+ G ++ V Sbjct: 135 GPPVVIKLLEGTQGVGVVLAETIKAAKSTI--EAFYGLKANFLIQEYIAESKGADIRAFV 192 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +G+ + + + DF S + H + +D+ E ++ A A +A+G + Sbjct: 193 IGNKVIAAMKRQGAEGDFRS---------NLHRGGSGCMIDLSPEEEQTAIAAAKALGVK 243 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 I+ D L +R +E+N PG+ + +G +++ +ED Sbjct: 244 -IAGVDMLQS--ARGPLVMEVNSSPGLRGIE------EVSGLDIASMIVAYIED 288 >gi|261330789|emb|CBH13774.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei gambiense DAL972] Length = 739 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 22/194 (11%) Query: 86 ASALSM-DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140 A+ LSM K SK+++ + GVP+ P D I P +IK + GG G Sbjct: 179 AAMLSMGSKSESKRIMEAAGVPIVPGYYGEDQNPDRLLHEAKTIGFPVLIKAVSGGGGKG 238 Query: 141 IIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194 + ++ ++ L +L+S+ ++ D++++E+YV + C + D S D Sbjct: 239 MKIVMEETEFHL-MLESAKREAINFFKDDRVILERYVMHPRHIECQIFFD-SFDNGVF-- 294 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ + + + A P +D+ + + +A A +A+G G +F+FD Sbjct: 295 ----FFERDCSVQRRHQKVIEEAPAPGLSVDMRRRIGDVALTAARAVGYVGAGTVEFIFD 350 Query: 252 PLSRKVFWLEINVQ 265 + F++E+N + Sbjct: 351 TEKDEFFFMEMNTR 364 >gi|83414067|dbj|BAE53824.1| D-alanine:D-alanine ligase [Streptococcus oralis] Length = 96 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRYNAETAFRAIGGLGLSRCDF 96 >gi|13509021|emb|CAC35261.1| D-alanin-D-alanin ligase [Campylobacter jejuni] gi|37783479|gb|AAP41867.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ ++ P +IKP + GSS+GI ++K Sbjct: 7 ASILSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E++ + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|285017455|ref|YP_003375166.1| ribosomal protein s6 modification protein [Xanthomonas albilineans GPE PC73] gi|283472673|emb|CBA15178.1| probable ribosomal protein s6 modification protein [Xanthomonas albilineans] Length = 291 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 28/210 (13%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE+ H+ + A+ + DK+R+ Q++++ G+ + P + D+ L+S Sbjct: 75 AVLRQLEMMGVHTPNPSDAILRARDKLRAHQLLAAKGIDM-PMTVFGDNPDDTGDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV---DGIELT 178 PP+V+K +G G+I+ +K + ++ L+ S N L+++++ +G +L Sbjct: 134 GPPPHVVKLNEGAQGTGVILAEKASASRGMVEALRGLSAN----FLVQEFIAEAEGADLR 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+GD + P+ DF S + H+ Q +A + +A+ Sbjct: 190 CFVVGDQVVAAMRRTAPEGDFRS---------NLHLGGTAERYSPSSSEQEVAIRSAKAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 G G++ D + R LE+N PG+ Sbjct: 241 GL-GVAGVDLISS--RRGPLVLEVNSTPGL 267 >gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor] gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor] Length = 603 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 51/234 (21%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK------------------ 93 D+ F V+HG FGEDG +Q +LE +P+ + + DK Sbjct: 97 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKKDKLAKPELEAWFKTVNL 156 Query: 94 -MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + +V+ G V +L +KP + GSS+G++V Sbjct: 157 NKENGKVIGWIGEGVTSDVLEQ---------------VKPTRAGSSIGMVVAYGVNDAAQ 201 Query: 153 DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSL 209 + S D+++IE +++G + T V+ + + +E + +PK EL+YS+ Sbjct: 202 KAEEIISEGIDDKVIIEVFLEGALSFTTIVVDVGTANNSEPVVLLPK----EVELQYSNS 257 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 + T+ K + Y R +L + I G+ ++ FLF S K +E N Sbjct: 258 SDTN----KDTIFNY----RKKYLPSRQIS--GMEQTSFLFQQASTKTTTVETN 301 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 14/99 (14%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCP---- 109 V+HG GEDG +Q +LE +P+T G + S +DK+ S V S GV P Sbjct: 384 VVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTCIDKVASSLAVDHLVSYGVRTIPKDVR 443 Query: 110 -------SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 S LV+ + L + +KP + G S G+ Sbjct: 444 ATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGV 482 >gi|15430590|dbj|BAB64422.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] gi|15430600|dbj|BAB64427.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V F+ +E KY +++ +PA +P I +V+ A L Sbjct: 67 LTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115 >gi|83414107|dbj|BAE53844.1| D-alanine:D-alanine ligase [Streptococcus oralis] gi|83414109|dbj|BAE53845.1| D-alanine:D-alanine ligase [Streptococcus oralis] Length = 96 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA+I D+ +++ A A +AIG G+SR DF Sbjct: 64 PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|146296639|ref|YP_001180410.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410215|gb|ABP67219.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 384 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSI 150 DK++ KQV+ S G+PV V F + P V K KGG G++V+K I Sbjct: 109 DKLKQKQVLQSAGLPVPRFERVESFDISFFENFGFPLVQKATKGGYDGRGVVVLKSKDDI 168 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 +L++ S+ IE++VD EL V + DV V + F + +++ Sbjct: 169 N-KVLKTESY-------IEEFVDVEKELAVIVARNKKGDVVSYPVVEMVFD----ETANI 216 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ++PA++ DI E +++A A +A+ G+ + LF RK+ EI +P Sbjct: 217 LDILIVPARVEKDIEDEAKKIAIKAVEALQGVGVFGVE-LFLTKDRKILINEIAPRP 272 >gi|193873016|gb|ACF23198.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ ++ T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA I D+ +++ A A +AIG G+SR DF Sbjct: 64 PANISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|167041454|gb|ABZ06205.1| putative D-ala D-ala ligase [uncultured marine microorganism HF4000_007D16] Length = 357 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 37/273 (13%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLV--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LA KPDL F+ + + + G++ LEL +I Y S A DK +K+++ Sbjct: 93 LALRKPDLVFSGVKYFYFDSGIIWLNDYLELYDISYIASNREALHNEHDKSIAKKIMQKA 152 Query: 104 GVPVCPSILVNRFTMD-SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + + FT + +HL I+ P IKPL GG S G+ SI D L Sbjct: 153 NIKTA-----DFFTTEPGEHLTEMSIPIAFPLFIKPLTGGDSRGV----DKNSIVYDFLS 203 Query: 157 SSS------WNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSD----FYS 201 + + L+E Y+ G E + ++ D S EI V K+ Sbjct: 204 FQAKVLDIKRKQNLRSLVETYLPGKEYSVSILQDNSNGNLKAMPIEIVVDKNINGHCILD 263 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y++K N + A IY ++ L+ A +A+G + + R D + F +E Sbjct: 264 YDIKK---NDQEKVIAVTDNKIYNQLSDLSKDAFKALGGKSLGRIDIKMNHNGVPHF-IE 319 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N+ PG+ ++ G + +++L + + Sbjct: 320 ANLMPGLRNGYLYRACLFNLGMGYEQMILTIAD 352 >gi|298674876|ref|YP_003726626.1| hypothetical protein Metev_0936 [Methanohalobium evestigatum Z-7303] gi|298287864|gb|ADI73830.1| protein of unknown function DUF201 [Methanohalobium evestigatum Z-7303] Length = 370 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 35/191 (18%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A +S DK +SKQ S +P + P +IKPL SS+G+ +I Sbjct: 97 AYRISSDKQKSKQYFKSINIPT-----------PKDYPCKLPCIIKPLSESSSIGVSIIH 145 Query: 146 KDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ L S + D+L +IE++++G ++ V+GD T AV K + Sbjct: 146 DNK-----YLDSKT----DELKIIEEFIEGDVVSLEVVGDG----TNFAVVKETIVHIDE 192 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY H++ PL+ E +++A+ +G +GI + + +P +V +EI+ Sbjct: 193 KY----DCHMV---TPLEHDIEFRKIAYKLASNLGLKGIMDVEAIKNPDDLRV--IEIDA 243 Query: 265 Q-PGMTPVSIF 274 + P TP+ ++ Sbjct: 244 RFPSQTPIVVY 254 >gi|83816045|ref|YP_445261.1| D-alanine--D-alanine ligase superfamily protein [Salinibacter ruber DSM 13855] gi|83757439|gb|ABC45552.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber DSM 13855] Length = 294 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 17/254 (6%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D A N+ G + + V +LE+ +P S L ++++DK +K +V++ +P P Sbjct: 28 DAAINITEGAHSRNREAYVPILLEMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPP 87 Query: 110 -SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQ 165 + +D+ L P +KP G+S GI K + + + + + Sbjct: 88 HRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITPDSKVEDVAALRRAVDRITTTYDQD 147 Query: 166 LLIEQYV-DGIELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKYSSLNST-----HVL 215 + E +V G E T V+G +L V + V P + + L++ + + L Sbjct: 148 AVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPTTGLGLHALEHRGAPTADQDWEYEL 207 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + + +Q L+ A + CR +R+DF D F LEIN P P F Sbjct: 208 RGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVDGDGTPWF-LEINPLPTFKPDDTFA 266 Query: 276 EMAAYAGYSFRELL 289 +A G + + L Sbjct: 267 IVAELMGRDYVDYL 280 >gi|222546879|gb|ACM66944.1| AccA1 [Streptomyces toxytricini] Length = 673 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 15/123 (12%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G ASA+S+ DK+R+K+ V + GVPV P S L + +++ I P ++KP GG Sbjct: 104 GPPASAISLMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELVEAAEKIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189 G+ +++ + I ++ S D LL+E++VD IE+ VM DA +V Sbjct: 164 GGKGMRLVRDGAVLAEEIAAARREARSSFGDDTLLVERWVDRPRHIEIQ--VMADAHGNV 221 Query: 190 TEI 192 + Sbjct: 222 VHL 224 >gi|83414025|dbj|BAE53803.1| D-alanine:D-alanine ligase [Streptococcus mitis] Length = 96 Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY + + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKISMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|77166871|gb|ABA62410.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 K+ D++KEV+++A ++ + C +R D L Sbjct: 62 KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|83415056|dbj|BAE53787.1| D-alanine:D-alanine ligase [Streptococcus sinensis] Length = 96 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ ++ T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYAVKSTLPGEV-VKDVAFYDYEAKYIDNRITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI ++ ++ A A +A+G +G++R DF Sbjct: 64 PAKISDEVTSIMRTNAETAFRALGGQGLARCDF 96 >gi|78358083|ref|YP_389532.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220488|gb|ABB39837.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 351 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 44/245 (17%) Query: 41 SVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + L +A L PD+ FN+ L G+ L A+ IP+T + + LS K+ K Sbjct: 50 AASLRIAALNPDVVFNLVEELDGDIAMAPLAPALFAHAGIPFTGADAASMTLSGSKLLCK 109 Query: 98 QVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 Q+++ G +C V + I Y+ K + +SLG+ D Sbjct: 110 QILT--GADICTPAWVTADGVCGGMGDLPRTADAFIPGRYLCKSVHEHASLGL-----DD 162 Query: 149 SIPLDLLQSSS---------WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 S +D +Q+ HG EQYV+G E + D + V + + +F Sbjct: 163 SCIVDAVQTGDVMAALMRCRTRHGGTWFAEQYVEGREFNIAAIADGNGGVHVLPCAEIEF 222 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH----------------QAIGCRGI 243 Y + + + + V+R F A +A G G Sbjct: 223 RGYAPERPRIVGYAAKWHQDSFECSNTVRRFDFCAEDSALLELLRTVTVRCWRAFGLAGY 282 Query: 244 SRSDF 248 +R DF Sbjct: 283 ARIDF 287 >gi|77166873|gb|ABA62411.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166877|gb|ABA62413.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166879|gb|ABA62414.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166881|gb|ABA62415.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166897|gb|ABA62423.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166899|gb|ABA62424.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166905|gb|ABA62427.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166915|gb|ABA62432.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166919|gb|ABA62434.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166925|gb|ABA62437.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 K+ D++KEV+++A ++ + C +R D L Sbjct: 62 KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|13509017|emb|CAC35259.1| D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 AS LS +K +K S GV ++ R +S+ ++ P +IKP + GSS+GI ++K Sbjct: 7 ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202 ++ L+ + + + L++E + + I+ G M + + I P K +F + Sbjct: 66 DEKD--LEYAKDVGFEFDNDLVVEDFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E KY S + + L I D+ +E++ Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147 >gi|302878651|ref|YP_003847215.1| D-alanine--D-alanine ligase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581440|gb|ADL55451.1| D-alanine--D-alanine ligase domain protein [Gallionella capsiferriformans ES-2] Length = 331 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123 LV AI E + + + ++ DK +K++ S CG+ + P+ + R D +++ Sbjct: 92 ALVPAICETFGLRFIGPDVYGRIVAQDKEVTKRLASDCGI-ITPAWRIVRSVEDLRYISG 150 Query: 124 ISPPYVIKPLKGGSSLGII----VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKPL GSS+GI V+ +PL ++N +LIE++V G E+ Sbjct: 151 LRLPVVIKPLMEGSSIGIAQRNRVVDVADVLPLAKELLETFNQ--PVLIEEFVAGREVAY 208 Query: 180 GVM---GDASLDVTEIAVPKSDFY 200 + G S +E+ + +D Y Sbjct: 209 SKIQHAGAESWAFSEVVIEGNDDY 232 >gi|77166887|gb|ABA62418.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 K+ D++KEV+++A ++ + C +R D L Sbjct: 62 KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|83414137|dbj|BAE53859.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+A + + E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA++P + +++ A A +A+G G+SR DF Sbjct: 64 PAQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96 >gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 814 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 31/263 (11%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87 A + +ID R+V ++ K D+ FN+ G E ++E LE +G + Sbjct: 296 ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 355 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K+ K +V S GV V +L+N +HL P ++K L G +S+GI Sbjct: 356 GFEPSKIDMKLMVGSSGVKVPNFVLLNDEEGLAKKCRHL-KFPVIVKHLSGYASVGI--H 412 Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195 K+++ LD L++ +NH L+E+++ G E T D S ++ P Sbjct: 413 KENRCDTLDQLRTRVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 469 Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245 DF +E K++ + L + P Y + +A A + I G R Sbjct: 470 FNFLQSSDDFAYFEKKWTMECGDQAYGFLASSDP--AYPAITEMARNAFKYIMNGVGYGR 527 Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268 DF D L+ ++LEIN GM Sbjct: 528 VDFRIDELTGAPYFLEINPNCGM 550 >gi|6403499|gb|AAF07839.1|AC010871_15 hypothetical protein [Arabidopsis thaliana] Length = 269 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 29 AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 AGF ++ ++ S+ + H K A F +HG GEDG +Q +LE + YT G+L Sbjct: 15 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 74 Query: 86 ASALSMDKMRSKQVVSS 102 AS MDK+ + Q +S+ Sbjct: 75 ASRTCMDKVMTSQALSN 91 >gi|257057021|ref|YP_003134853.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora viridis DSM 43017] gi|256586893|gb|ACU98026.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora viridis DSM 43017] Length = 665 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 19/186 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 DK+R+K+ VS+ GVPV P VN + + + + P ++KP GG G+ ++ Sbjct: 117 DKIRAKETVSAAGVPVVPG--VNDVSDVDSIVAAAERVGYPVLLKPSAGGGGKGMRLVHT 174 Query: 147 DQSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201 +P + + G D+LL+E++V + + V+ D V + + Sbjct: 175 PAELPAAVESAQREARGAFGDDRLLVERFVAEPRHIEIQVLADTHGTVVHLGERECSLQR 234 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--RKVFW 259 K + VL A + + + A A +++G G +F+ P S + F+ Sbjct: 235 RHQKIVEEAPSAVLDA----ETRARMGKAAVEAARSVGYVGAGTVEFIV-PASAPEEFFF 289 Query: 260 LEINVQ 265 LE+N + Sbjct: 290 LEMNTR 295 >gi|15430598|dbj|BAB64426.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 L V F+ +E KY +++ +PA +P I +V+ A L Sbjct: 67 LTVGACDAISLVYGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115 >gi|115449421|ref|XP_001218602.1| predicted protein [Aspergillus terreus NIH2624] gi|114187551|gb|EAU29251.1| predicted protein [Aspergillus terreus NIH2624] Length = 262 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 30/221 (13%) Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114 HG + V A+L+ +IPYT S AL K +K +++ +P P L+ N Sbjct: 5 FHGT-SRESQVPALLDAYQIPYTFSDSNTMALCQHKANTKAILNHYRIPTAPFFLLSIGN 63 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGDQ 165 S + +S P +KP+ GSS GI K I L+++ N G Sbjct: 64 VLPKSSSEIHTSALSFPVFLKPVSEGSSKGIDDFNKVNDIA--GLETAVQNLKSRYPGQD 121 Query: 166 LLIEQYVDGIELTCGVMGDAS----LDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAK 218 +L+E ++ G E T ++G + + V E K D L +++ + Sbjct: 122 ILVESFLSGPEYTVSILGTGTHSRVVGVREHIWQNRIKDDGCGTNLNFATRENKSTAGTG 181 Query: 219 IPLD--------IYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + K ++A A +A GCR R D FD Sbjct: 182 LAWSDSHDMADPRIKAACQVALDAWKAFGCRDAGRVDIRFD 222 >gi|83414131|dbj|BAE53856.1| D-alanine:D-alanine ligase [Streptococcus sanguinis] Length = 96 Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V E+ G++G D + V FY Y+ KY T +P Sbjct: 5 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 A++P + +++ A A +A+G G+SR DF Sbjct: 65 AQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96 >gi|317055158|ref|YP_004103625.1| ATP-dependent carboxylate-amine ligase domain-containing protein [Ruminococcus albus 7] gi|315447427|gb|ADU20991.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Ruminococcus albus 7] Length = 420 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK ++K ++ S GV V + ++N+ F+ + +S P V+KP S GI V+ + + Sbjct: 104 DKKQAKDLLRSLGVSVPENRIINKDFSDEDIKGLSFPLVVKPSNAWGSKGIYVVNNSEEL 163 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L +S+ +H +++L+E+Y G E Sbjct: 164 RLYAEKSAEISHSEKVLVEEYSKGGEYN 191 >gi|158335744|ref|YP_001516916.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017] gi|158305985|gb|ABW27602.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017] Length = 330 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 10/141 (7%) Query: 51 PDLAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 PDL +N+ G + L A+LE L IPYT +L+++K K V+ CG+ Sbjct: 66 PDLVWNLSVGALSRNRTALAPALLEHLGIPYTGGDAATKSLTLNKDWLKPVLEWCGIATP 125 Query: 109 PSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHG 163 P RF ++ PP+ ++KP G SLG+ + + +Q Sbjct: 126 P---WRRFGLEESITELPPWPVSLLKPTCEGYSLGLQRFETQDGLAVLQKQVQQLQSQFQ 182 Query: 164 DQLLIEQYVDGIELTCGVMGD 184 +L E + G E+T GV+G+ Sbjct: 183 TAVLCEPLIAGREITVGVVGN 203 >gi|71410983|ref|XP_807760.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70871830|gb|EAN85909.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 513 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 39/243 (16%) Query: 52 DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 D+ +N G ED +VQA LE ++P+T G ++ + K K++ C V Sbjct: 71 DVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFT--GAISKYYELSKPEMKRMAHYCAVKT 127 Query: 108 CPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P ++ R + H P ++K + G SS+G+ K + +D L+ Sbjct: 128 APYAVLEAGDNVRELCAALHF---PLIVKHISGYSSVGMD--KSCKVYDMDALKERVARF 182 Query: 163 GDQL---LIEQYVDGIELTCGVMGDAS-------LDVTEIAVPK-SDFYSYELKYSSLNS 211 DQ L+E+++ G E T V DAS + P+ DF + LK+ + Sbjct: 183 IDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWETYEG 242 Query: 212 ------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + PA +P I+ + R AFL +G G R D D V +LEIN Sbjct: 243 MIWRLVSEDDPA-LPDIIH--IARTAFL--HMMGGVGYGRVDVRIDREKNTVVFLEINPN 297 Query: 266 PGM 268 G+ Sbjct: 298 CGI 300 >gi|193872918|gb|ACF23149.1| D-alanine-D-alanine ligase [Streptococcus oralis] Length = 96 Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D ++ A A +AIG G+SR DF Sbjct: 64 PAKISDDAVAVMRHNAETAFRAIGGLGLSRCDF 96 >gi|322822844|gb|EFZ28784.1| hypothetical protein TCSYLVIO_4975 [Trypanosoma cruzi] Length = 514 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 39/243 (16%) Query: 52 DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 D+ +N G ED +VQA LE ++P+T G ++ + K K++ C V Sbjct: 72 DVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFT--GAISKYYELSKPEMKRMAHYCAVKT 128 Query: 108 CPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P ++ R + H P ++K + G SS+G+ K + +D L+ Sbjct: 129 APYAVLEAGDNVRELCAALHF---PLIVKHISGYSSVGMD--KSCKVYDMDALKERVARF 183 Query: 163 GDQL---LIEQYVDGIELTCGVMGDAS-------LDVTEIAVPK-SDFYSYELKYSSLNS 211 DQ L+E+++ G E T V DAS + P+ DF + LK+ + Sbjct: 184 IDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWETYEG 243 Query: 212 ------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + PA +P I+ + R AFL +G G R D D V +LEIN Sbjct: 244 MIWRLVSEDDPA-LPDIIH--IARTAFL--HMMGGVGYGRVDVRIDREKNSVVFLEINPN 298 Query: 266 PGM 268 G+ Sbjct: 299 CGI 301 >gi|83415060|dbj|BAE53789.1| D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 96 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++LIEQ V+ E+ G+ G+ A + V FY YE KY T +P Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AK+ D+ + A A AIG G+SR DF Sbjct: 65 AKLSEDVIATMCDYAEKAFHAIGGVGLSRCDF 96 >gi|332664347|ref|YP_004447135.1| D-alanine--D-alanine ligase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333161|gb|AEE50262.1| D-alanine--D-alanine ligase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 1212 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 11/107 (10%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D AF L G GEDG +Q LE+ +IPY SG S ++++K+++ V G + Sbjct: 580 DQAFIALQGRPGEDGQLQHELEVRKIPYNGSGPKTSQIAVNKVQTLDVWRRNGFIGPNQL 639 Query: 112 LVNR--FTMDSQHL-------ISPPYVIKPL--KGGSSLGIIVIKKD 147 LV++ F + ++ +S P+V KP+ GG ++ II + D Sbjct: 640 LVSKRAFELSAEEAYQKIESRLSYPFVAKPIDQNGGIAVKIIRNRTD 686 >gi|115433702|ref|XP_001216988.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624] gi|114189840|gb|EAU31540.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624] Length = 650 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136 G + A + DK+++KQ+ C VPV P++ R T D+ + + P +IK + GG Sbjct: 109 GPVTLARTGDKLQAKQLAMECNVPVLPAM--ERPTADATEIRAFARRVGYPVMIKAVDGG 166 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAV 194 GI ++++D+ + + + + + +E+ VDG + V+GD + DV + Sbjct: 167 GGRGIRLVRRDEELENAVRGAMGESPSQTVFVEKAAVDGYHHIEVQVVGDGT-DVRHLW- 224 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + D + L PL ++V A +AI R + +FL Sbjct: 225 -ERDCSVQRRFQKVIEIAPSLMQNRPL--IQQVVDAALRMARAINYRSLGTVEFLVHEQQ 281 Query: 255 RKVFWLEIN 263 ++ ++LEIN Sbjct: 282 KEFYFLEIN 290 >gi|72393453|ref|XP_847527.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma brucei TREU927] gi|62175114|gb|AAX69263.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei] gi|70803557|gb|AAZ13461.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 678 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 22/194 (11%) Query: 86 ASALSM-DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140 A+ LSM K SK+++ + GVP+ P D I P +IK + GG G Sbjct: 118 AAMLSMGSKSESKRIMEAAGVPIVPGYYGEDQNPDRLLHEAKTIGFPVLIKAVSGGGGKG 177 Query: 141 IIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194 + ++ ++ L +L+S+ ++ D++++E+YV + C + D+ + Sbjct: 178 MKIVMEETEFHL-MLESAKREAINFFKDDRVILERYVMHPRHIECQIFFDSFGN------ 230 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ + + + A P +D+ + + +A A +A+G G +F+FD Sbjct: 231 -GVFFFERDCSVQRRHQKVIEEAPAPGLSVDMRRRIGDVALTAARAVGYVGAGTVEFIFD 289 Query: 252 PLSRKVFWLEINVQ 265 + F++E+N + Sbjct: 290 TEKDEFFFMEMNTR 303 >gi|294507128|ref|YP_003571186.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8] gi|294343456|emb|CBH24234.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8] Length = 333 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 17/254 (6%) Query: 52 DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D A N+ G + + V +LE+ +P S L ++++DK +K +V++ +P P Sbjct: 67 DAAINITEGAHSRNREAYVPILLEMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPP 126 Query: 110 -SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQ 165 + +D+ L P +KP G+S GI K + + + + + Sbjct: 127 HRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITPDSKVEDVAALRGAVDRITTTYDQD 186 Query: 166 LLIEQYV-DGIELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKY-----SSLNSTHVL 215 + E +V G E T V+G +L V + V P + + L++ + + + L Sbjct: 187 AVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPTTGLGLHVLEHRGAPTADRDWEYEL 246 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + + +Q L+ A + CR +R+DF D F LEIN P P F Sbjct: 247 RGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVDGDGTPWF-LEINPLPTFKPDDTFA 305 Query: 276 EMAAYAGYSFRELL 289 +A G + + L Sbjct: 306 IVAELMGRDYVDYL 319 >gi|83415050|dbj|BAE53784.1| D-alanine:D-alanine ligase [Streptococcus cristatus] Length = 96 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + T E+ + + FY YE KY T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNYDVRSTLPGEVVIDVA-FYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 P KI ++ ++ A +A +A+G +G++R DF Sbjct: 64 PVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96 >gi|302875946|ref|YP_003844579.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium cellulovorans 743B] gi|307686656|ref|ZP_07629102.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302578803|gb|ADL52815.1| D-alanine--D-alanine ligase domain protein [Clostridium cellulovorans 743B] Length = 346 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/276 (18%), Positives = 121/276 (43%), Gaps = 21/276 (7%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLH---------GNFG 63 ++ + + ALE G V + V+ + L+ + + + DL ++ ++ N Sbjct: 18 NMETTEKMKCALESYGHWVVVLYVESNEELIRHIKYNEYDLVWSSIYYFTDNIKCINNIN 77 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 E V IL + + Y + ++K ++ +++ G+ ++ + + + Sbjct: 78 EKTCVMDILREMGVAYVGANAEVMKNMINKKKTIELLEKYGLSTHQQYVLEKGSAIPKLD 137 Query: 124 ISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + +KP S G+ ++ ++ + + +Q N+ L+E+Y+ G E T Sbjct: 138 FTKKWFVKPCFESESNGVSEKSIVHNEEELN-ERVQYILENYNQHALVEEYLSGDEYTTA 196 Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++G+ L + + K+ + Y + +L + +L +IP D +E+ +LA A + Sbjct: 197 IIGNKEKVTVLPIKNVVSSKA-YERYPVITQNLKTDKMLSFEIPYDEMEELNKLAIEAAK 255 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 A+G R D + S + +E+N PG+ P+ Sbjct: 256 ALGVCDTVRIDIRKNE-SGEFRVIELNGIPGLNPIK 290 >gi|83414165|dbj|BAE53873.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis] gi|83414167|dbj|BAE53874.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis] gi|83414169|dbj|BAE53875.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis] gi|83414171|dbj|BAE53876.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis] Length = 96 Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMAI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA++ ++ K ++ A A +AIG G++R DF Sbjct: 64 PAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDF 96 >gi|289771483|ref|ZP_06530861.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces lividans TK24] gi|289701682|gb|EFD69111.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces lividans TK24] Length = 646 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173 ++ +D ++ D + ++ D LL+E+++D Sbjct: 169 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 204 >gi|193872886|gb|ACF23133.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNSTHVLP 216 ++ + ++L+EQ V+ E+ G++G+ + T V FY Y+ KY T +P Sbjct: 5 AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGKVVKDVAFYDYDAKYIDNKITMDIP 64 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 AKI D+ +++ A A +AIG +SR DF Sbjct: 65 AKISDDVVAVMRQNAETAFRAIGGLALSRCDF 96 >gi|322492477|emb|CBZ27752.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 868 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 31/259 (11%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILASALSM 91 + +ID R+V ++ K D+ FN+ G E ++E LE +G + Sbjct: 352 MKKIDSYRAVRKLVTSKKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 411 Query: 92 DKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K+ K +V S GV V +L++ +HL P ++K L G +S+GI K ++ Sbjct: 412 SKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--QKDNR 468 Query: 149 SIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP------ 195 LD L++ +NH L+E+++ G E T D S ++ P Sbjct: 469 CDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFL 525 Query: 196 --KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFL 249 DF +E K++ + L + P Y + +A A + I G R DF Sbjct: 526 QNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITEMARNAFKYIMNGVGYGRVDFR 583 Query: 250 FDPLSRKVFWLEINVQPGM 268 D L+ + ++LEIN GM Sbjct: 584 IDELTGEPYFLEINPNCGM 602 >gi|325981162|ref|YP_004293564.1| cyanophycin synthetase [Nitrosomonas sp. AL212] gi|325530681|gb|ADZ25402.1| cyanophycin synthetase [Nitrosomonas sp. AL212] Length = 773 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A +S DK +K ++ SCGVPV +V + ++ I P VIKP G G+ Sbjct: 227 IAEGISRDKDLTKTLLQSCGVPVPAGRIVESAKAAWEAAKDIGLPVVIKPCDGNHGRGVF 286 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + QS ++ + N G +L+E+YV G E ++G Sbjct: 287 IELCQQS-EIESAYQMALNEGSGVLVERYVAGTEHRLLIIG 326 >gi|34495473|ref|NP_899688.1| biotin carboxylase [Chromobacterium violaceum ATCC 12472] gi|34101329|gb|AAQ57698.1| probable biotin carboxylase [Chromobacterium violaceum ATCC 12472] Length = 654 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 28/190 (14%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK R++Q++ + GVPV P + +++ I P ++KP GG G+ V+ + Sbjct: 115 DKARARQLMEAAGVPVLPGSPEATESYGLILETCAEIGYPVILKPSAGGGGKGMQVVWSE 174 Query: 148 QSIPLDL-----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + SS+ G +LL+E+YV L + GD + + Sbjct: 175 AELREAVDAAVRIGRSSFGDG-RLLVERYVSQPRHLEVQIFGDGR---------GAAVHL 224 Query: 202 YELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +E + SL H PA +P D + + A QAIG R +F+ P R Sbjct: 225 FE-RECSLQRRHQKIVEEAPACGLPADTREALLAAAVRGAQAIGYRNAGTFEFILAPDGR 283 Query: 256 KVFWLEINVQ 265 ++LE+N + Sbjct: 284 -FYFLEVNTR 292 >gi|21221228|ref|NP_627007.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces coelicolor A3(2)] gi|7544041|emb|CAB87214.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173 ++ +D ++ D + ++ D LL+E+++D Sbjct: 169 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 204 >gi|288560297|ref|YP_003423783.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1] gi|288543007|gb|ADC46891.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1] Length = 379 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 39/227 (17%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL----ISPPYVI 130 IP S A ++ DK+++K+ S G+ V + ++N+ F+ + + L P V+ Sbjct: 91 IPVISSNFNAVDIASDKIKTKEFFKSIGLNVPEAKVLNKDDFSNEGEFLEKLGFQFPIVL 150 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 K +G I + + + D+LQ S+N Q L+E +++G E++ V+G + Sbjct: 151 KQGEGQGGKDICITSQFE----DVLQYFESFN---QALVENFIEGAEVSIEVIGWNGEYL 203 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL------PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V K D +SL H + P +E ++LA +G G Sbjct: 204 PLVPVYKGD--------TSLEGIHPIKRLRYGPCDFEAIDNEEFRQLAKKIAVNLGSEGT 255 Query: 244 SRSDFLFDPLSRKVFWLEINVQP-----------GMTPVSIFPEMAA 279 D ++ KV+ +EIN +P G++P+ + ++AA Sbjct: 256 IDMDLIYSREENKVYAIEINTRPSGTRYLSYATTGLSPLGLLVDIAA 302 >gi|256787590|ref|ZP_05526021.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces lividans TK24] Length = 655 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ Sbjct: 118 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 177 Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173 ++ +D ++ D + ++ D LL+E+++D Sbjct: 178 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 213 >gi|45658117|ref|YP_002203.1| putative glycolate oxidase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601359|gb|AAS70840.1| putative glycolate oxidase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 760 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 11/212 (5%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+ L++P +A + KMR + + +P + T D+ ++ P Sbjct: 91 VAAVANALDLPGIRYVDAEAASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFP 150 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186 V+KP + G+I ++ + + + ++ ++++E+Y+ G E++ + + + Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243 +T IA + + + Y E+ H +P+ + I KEV+ + F + +A+G G Sbjct: 211 FVITGIADRIIEREPYFIEMG-------HNMPSALSPSILKEVEEVMFRSMKALGITLGA 263 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + D P KV + + G FP Sbjct: 264 GKGDIKVTPDGVKVGEIAARLSGGFMSAFTFP 295 >gi|291447622|ref|ZP_06587012.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291350569|gb|EFE77473.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 332 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 36/317 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53 +AV+ GG ++E E +L S + A A + G S + V DR L+ A + D+ Sbjct: 17 IAVIAGGRTAEAEGTLGSAEQLARAAAELGHHTSLVSVEAAGHPQDRMSALLKA-AEHDV 75 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----- 108 A ++ G ++ LE L++PY S +A+ ++ K ++ + G+ Sbjct: 76 AIPLIPG-------LEGTLEFLDVPYVGSSPVAAGIAAHKGLFNDLLVAAGLGKVRYVYG 128 Query: 109 --PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 P +L +M + +S P +KP + G+S GI + + D + +++ H + Sbjct: 129 SGPEVL----SMWQKADMSLPVFVKPARLGASYGISRVTTAHELS-DAINAAA-EHDPVV 182 Query: 167 LIEQYVDG--IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKI 219 LIE+ V E ++ S ++ +P++ + L SL+ ++ + Sbjct: 183 LIEESVPTPFTEYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTG 242 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ + A A G +R D D +V+ EIN PG S FP + Sbjct: 243 DAELDSRLMEAALAAASLAGVACAARVDLFVDAHG-QVYVGEINALPGQGFNSNFPRIFE 301 Query: 280 YAGYSFRELLLWMVEDA 296 AG+S L M++ A Sbjct: 302 LAGFSRPRQLELMIDSA 318 >gi|156742904|ref|YP_001433033.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus castenholzii DSM 13941] gi|156234232|gb|ABU59015.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus castenholzii DSM 13941] Length = 484 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 23/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 DK+++K++ VP P I + + D I+ P +IK GG G++ + Sbjct: 118 DKIQAKEIARRSNVPTIPGIENVTSAGQITDWMRDQD--IAFPIMIKAASGGGGKGMVRV 175 Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199 IP+ L Q+ S D +L+E+Y++ G + V+ D V + Sbjct: 176 DTPDQIPVALAQARSEAKKAFGDDTVLVEKYIEHGRHIEVQVVADEHRHVVHL------- 228 Query: 200 YSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E N + P+ + D+ +E+ A + IG +FLFDP ++ Sbjct: 229 FERECTLQRRNQKIIEEAPSTLENDLRQEICVTAARLMRRIGYTSAGTVEFLFDPATQSF 288 Query: 258 FWLEINVQ 265 ++LE+N + Sbjct: 289 YFLEVNTR 296 >gi|49183264|ref|YP_026516.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str. Sterne] gi|65317672|ref|ZP_00390631.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] gi|165871535|ref|ZP_02216181.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0488] gi|167634137|ref|ZP_02392459.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0442] gi|167640293|ref|ZP_02398558.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0193] gi|170687730|ref|ZP_02878945.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0465] gi|170707870|ref|ZP_02898320.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0389] gi|177653413|ref|ZP_02935623.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0174] gi|190567364|ref|ZP_03020278.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis Tsiankovskii-I] gi|227812913|ref|YP_002812922.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229604016|ref|YP_002864872.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] gi|254686587|ref|ZP_05150446.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. CNEVA-9066] gi|254734935|ref|ZP_05192647.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Western North America USA6153] gi|254739720|ref|ZP_05197413.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Kruger B] gi|254754909|ref|ZP_05206944.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Vollum] gi|254756952|ref|ZP_05208980.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Australia 94] gi|49177191|gb|AAT52567.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str. Sterne] gi|164712639|gb|EDR18170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0488] gi|167511695|gb|EDR87076.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0193] gi|167530451|gb|EDR93166.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0442] gi|170127228|gb|EDS96105.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0389] gi|170668257|gb|EDT19005.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0465] gi|172081453|gb|EDT66526.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0174] gi|190561491|gb|EDV15462.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis Tsiankovskii-I] gi|227007521|gb|ACP17264.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229268424|gb|ACQ50061.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] Length = 91 Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++R A +A Q++ G++R+DF F +V+ E+N PG TP S+FP + + G + Sbjct: 9 IKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYP 67 Query: 287 ELL 289 EL+ Sbjct: 68 ELI 70 >gi|24214188|ref|NP_711669.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str. 56601] gi|24195089|gb|AAN48687.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str. 56601] Length = 760 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 11/212 (5%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+ L++P +A + KMR + + +P + T D+ ++ P Sbjct: 91 VAAVANALDLPGIRYVDAEAASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFP 150 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186 V+KP + G+I ++ + + + ++ ++++E+Y+ G E++ + + + Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243 +T IA + + + Y E+ H +P+ + I KEV+ + F + +A+G G Sbjct: 211 FVITGIADRIIEREPYFIEMG-------HNMPSALSPSILKEVEEVMFRSMKALGITLGA 263 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + D P KV + + G FP Sbjct: 264 GKGDIKVTPDGVKVGEIAARLSGGFMSAFTFP 295 >gi|325972387|ref|YP_004248578.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] gi|324027625|gb|ADY14384.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] Length = 310 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 37/248 (14%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 LV ILE L + YT + + LS DK+ +K+++S +P P++ ++ +S+ + Sbjct: 75 LVPGILESLHLRYTGCSLSSLFLSTDKVLAKRLLSEHTLPT-PAL----YSKESEKGL-- 127 Query: 127 PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 Y+IKP +S+G+ +++ D+ +L+ G EQY+DG E T + G Sbjct: 128 -YLIKPTTQDASVGLDEQCLVEHDRVQA--VLREKEQEVGCPCFAEQYIDGREFTVCMYG 184 Query: 184 DASLDVTEIAVP----------KSDFYSYELKYS--SLNSTHVLPAKIPLD-----IYKE 226 + + I P + +Y+ K++ + H+ AK D + ++ Sbjct: 185 --TKEEAHILPPYEWVFNDYGQNAKIITYDAKWTENTFGYEHI-TAKYTHDEADKALLQQ 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + +++ G +R DF D +R + LE+N P F +A +SF Sbjct: 242 LVQISTSCWNVFDLHGYARVDFRVDDQNRP-YILELNANPSFYG---FYHLAKEWLFSFE 297 Query: 287 ELLLWMVE 294 +++L++VE Sbjct: 298 DIVLFLVE 305 >gi|83415062|dbj|BAE53790.1| D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 96 Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++G+ + E+ V FY Y+ KY T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSWPGEV-VKDVAFYDYQAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAK+ D+ +++ A A AIG G++R DF Sbjct: 64 PAKLSEDVIVTMRQYAEKAFHAIGGVGLARCDF 96 >gi|332671724|ref|YP_004454732.1| phosphoribosylamine/glycine ligase [Cellulomonas fimi ATCC 484] gi|332340762|gb|AEE47345.1| phosphoribosylamine/glycine ligase [Cellulomonas fimi ATCC 484] Length = 431 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 86 ASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIV 143 A+ L K +K+V+++ GVP P + +++ PPYV+K + G++V Sbjct: 96 AARLEGSKAFAKEVMAAAGVPTAEPRVASTVAEVEAALDAFGPPYVVKEDGLAAGKGVVV 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 +D+++ L+ ++ G ++++E+Y+DG E++ V+ D + V VP DF Sbjct: 156 -TQDRAVALEHGRACVEKEGGRVVVEEYLDGPEVSLFVLTDGTAVVP--LVPAQDF 208 >gi|83414163|dbj|BAE53872.1| D-alanine:D-alanine ligase [Streptococcus cristatus] Length = 96 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVRSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 P KI ++ ++ A +A +A+G +G++R DF Sbjct: 64 PVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96 >gi|49475570|ref|YP_033611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella henselae str. Houston-1] gi|49238377|emb|CAF27604.1| Biotin carboxylase [Bartonella henselae str. Houston-1] Length = 452 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 19/218 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE +I + + DK+ +K+ G+PV P +I Sbjct: 82 YGFLSENAKFADVLEAHKITFIGPTAAHIRIMGDKIEAKKTAKKLGIPVVPGSDGAITEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170 + H I P +IK GG G+ V++ +Q + L + S D + IE+ Sbjct: 142 AEALRIAHEIGYPVIIKASAGGGGRGMKVVRSEQEFAIALETTRSEAAAAFGDDAVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++ IE+ V+GD + + I + + D S + ++ + PA ++ K++ Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKIWEEATSPALNEIE-RKKI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + A +G RG +FL++ + K +++E+N + Sbjct: 256 GDIVANACAQLGYRGAGTIEFLYE--NGKFYFIEMNTR 291 >gi|293401735|ref|ZP_06645876.1| putative carbamoyl-phosphate synthase large chain [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304687|gb|EFE45935.1| putative carbamoyl-phosphate synthase large chain [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 379 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 18/175 (10%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGII 142 ++ + +K ++ + G+ V P L + ++ + L + P ++KP S GI Sbjct: 95 ISDVICTNKYEMRKAFLANGIDV-PKFLETKGHVEKEQLSSFTFPLIVKPTDRSGSRGIT 153 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 I+ +++ + ++++ + +IE++++G E +C + + F ++ Sbjct: 154 KIETYEALDKAIQIATAYAFEKKAIIEEFIEGPEYSCECISYQG---------EHTFLAF 204 Query: 203 ELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFD 251 KY+S + + HV P+ IP+D Q+ F A A+ + G S +F D Sbjct: 205 TQKYTSGAPHFIETGHVEPSNIPMDKITAYQKEIFKALDALHIQNGASHCEFKID 259 >gi|322707564|gb|EFY99142.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Metarhizium anisopliae ARSEF 23] Length = 583 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 11/126 (8%) Query: 163 GDQLLIEQYVDGIELTCGV--MGDASLDVTEI------AVPKSDFYSYELKYSSLNSTHV 214 D +++++Y+DG + TC V MG + + +T K F +++LK+ + Sbjct: 189 NDDVVVQEYIDGKDYTCSVVEMGQSCIALTPFVYNTKQTTSKDKFLTFDLKFDQETRIEL 248 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS-DF-LFDPLSRKVFWLEINVQP-GMTPV 271 L + +++ +Q++A A GC+G + D L + +VF +E+N QP P Sbjct: 249 LQKQHNPTLFERLQQVALEAFTISGCKGSNMGCDVDLRATTTGEVFAIEVNPQPAAFMPD 308 Query: 272 SIFPEM 277 +F ++ Sbjct: 309 GVFQDL 314 >gi|322499742|emb|CBZ34816.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 529 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87 A + +ID R+V ++ K D+ FN+ G E ++E LE +G + Sbjct: 11 ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 70 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K+ K +V S GV V +L++ +HL P ++K L G +S+GI Sbjct: 71 GFEPSKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 127 Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195 K + LD L++ +NH L+E+++ G E T D S ++ P Sbjct: 128 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 184 Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245 DF +E K++ + L + P Y + +A A + I G R Sbjct: 185 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITDMARNAFKYIMSGVGYGR 242 Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268 DF D L+ + ++LEIN GM Sbjct: 243 VDFRIDELTGEPYFLEINPNCGM 265 >gi|146089042|ref|XP_001466217.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070319|emb|CAM68656.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 529 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87 A + +ID R+V ++ K D+ FN+ G E ++E LE +G + Sbjct: 11 ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 70 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K+ K +V S GV V +L++ +HL P ++K L G +S+GI Sbjct: 71 GFEPSKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 127 Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195 K + LD L++ +NH L+E+++ G E T D S ++ P Sbjct: 128 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 184 Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245 DF +E K++ + L + P Y + +A A + I G R Sbjct: 185 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITDMARNAFKYIMSGVGYGR 242 Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268 DF D L+ + ++LEIN GM Sbjct: 243 VDFRIDELTGEPYFLEINPNCGM 265 >gi|325916230|ref|ZP_08178511.1| SSU ribosomal protein S6P modification protein [Xanthomonas vesicatoria ATCC 35937] gi|325537524|gb|EGD09239.1| SSU ribosomal protein S6P modification protein [Xanthomonas vesicatoria ATCC 35937] Length = 291 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q++A + +A+G Sbjct: 192 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQQVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 270 >gi|51574084|gb|AAU07976.1| VanA [Enterococcus faecalis] Length = 96 Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Query: 165 QLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPA 217 ++LIEQ V G E+ C V+G+ A+L V E+ + + + E + S N+ +PA Sbjct: 1 KILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA 60 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251 + + +Q A ++A+GCRG++R D FL D Sbjct: 61 DLSAEERGRIQETAKKIYKALGCRGLARVDMFLQD 95 >gi|15606634|ref|NP_214014.1| biotin carboxylase [Aquifex aeolicus VF5] gi|2983860|gb|AAC07413.1| biotin carboxylase [Aquifex aeolicus VF5] Length = 477 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 86/184 (46%), Gaps = 15/184 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISP---PYVIKPLKGGSSLGIIVIKKD 147 DK+++K+V+ G+P P T+ D++H + P ++K GG G+ VI+ + Sbjct: 114 DKVKAKKVMKEVGLPTIPGTEEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNE 173 Query: 148 QSIPLDLLQS-----SSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201 + + + + + + GD L IE+YV+ + + ++GD ++ + S Sbjct: 174 EELEKNFESAFREAETFFGKGD-LFIEKYVENPKHIEVQILGDKYGNIIHLGERDC---S 229 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + ++ L P K+P D+ ++ A A +G +FL D + + +++E Sbjct: 230 IQRRHQKLIEIAPSP-KLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIE 288 Query: 262 INVQ 265 +N + Sbjct: 289 MNTR 292 >gi|255692931|ref|ZP_05416606.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM 17565] gi|260621242|gb|EEX44113.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM 17565] Length = 369 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P ++KP+ G S G+ + K + + L ++S + + +LIE+Y++G E++ + S Sbjct: 134 PVIVKPIDGSCSNGVTKVNKREDLTQALNRASQASLANCILIEEYIEGKEVSVESISFHS 193 Query: 187 ----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-R 241 L +T+ + ++ + + H P+ + LDI ++++ AIG Sbjct: 194 KHYVLTITDKETTGAPYF--------VETAHHQPSTLSLDIQEKLKYATCNILNAIGINN 245 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPG 267 G S ++F D + +F++E+ + G Sbjct: 246 GASHTEFKIDQ-NGNIFFIEVGARGG 270 >gi|119946462|ref|YP_944142.1| carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas ingrahamii 37] gi|119865066|gb|ABM04543.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas ingrahamii 37] Length = 1520 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 16/192 (8%) Query: 85 LASALSM-DKMRSKQVVSSCGVPVCPS---ILVN-RFTMDSQHLISPPYVIKPLKGGSSL 139 + S L+M +K + + GVPV P IL +D + + P ++K + GG Sbjct: 1054 MNSMLTMGNKSNAIKTAQDNGVPVVPGSHGILTGAEQALDIANAMGYPVLLKAVNGGGGK 1113 Query: 140 GIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIA 193 GI+VI+K + + Q S++ +GD L +E+Y+ + + ++ D + + Sbjct: 1114 GILVIEKAEDMFAGFSQVSAEARSAFGNGD-LYLEKYITSLRHIEVQLLRDKHCNTKVLG 1172 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + K + + +LPA + +++ K LA A+ G +F++D Sbjct: 1173 IRDCSVQRNNQKVVEESESTMLPAHLEVEVLKHTAALA----DAVDYMGAGTVEFIYDLD 1228 Query: 254 SRKVFWLEINVQ 265 ++++E+N + Sbjct: 1229 QDSIYFMEMNTR 1240 >gi|220912174|ref|YP_002487483.1| carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter chlorophenolicus A6] gi|219859052|gb|ACL39394.1| Carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter chlorophenolicus A6] Length = 733 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 17/221 (7%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 +G E+ L+ I + G+ A + DK+RSK V+ GVPV P V R M Sbjct: 105 YGFLSENADFARALDAAGIAFMGPGVEALNIMGDKIRSKNHVAGYGVPVVPG--VARPGM 162 Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLI 168 LI P +IKP GG G+ V++K +P L ++S D L + Sbjct: 163 TDAELIEAAPAVGFPLLIKPSAGGGGKGMHVVEKPGDLPAVLATARRVAASAFGDDTLFL 222 Query: 169 EQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYK 225 E+ V + V+ D+ +V + + K + +L +P D+ Sbjct: 223 ERLVTTPRHIEVQVLADSHGNVIHLGERECSLQRRHQKVIEEAPSPLLEG-LPHGADVRD 281 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQ 265 + A A +++ G +FL D + F++E+N + Sbjct: 282 RIGEAACNAARSVNYTGAGTVEFLVSDDAPDEFFFMEMNTR 322 >gi|40253001|dbj|BAD05864.1| putative D-Ala-D-Ala ligase [Streptomyces garyphalus] Length = 81 Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 219 IPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 IP + +Q+LA AH+A+G SR+DF D + LE+N PG+T S+ P Sbjct: 1 IPEEFASRLQQLALRAHEALGFGPHTYSRADFRCDAAGEPM-CLEVNALPGLTATSLLPL 59 Query: 277 MAAYAGYSFREL 288 A+ AG+++ +L Sbjct: 60 GASGAGWTYADL 71 >gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 831 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 24/182 (13%) Query: 22 CASALEDAGF-------KVSQIDVDRSVG-----LVLAHLKPDLAFNVLHGN----FGED 65 C +AL D GF ++ ++D D +G +V A + ++ F L FG Sbjct: 96 CEAALNDTGFDLADALHQLRELDEDVRLGPSTGAIVEAAVARNIPFRRLTDGSLVLFGW- 154 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL 123 G Q ++ E+ T + +A A++ DK +K+++S+ GVPV V+ ++ Sbjct: 155 GSRQRRIQAAEMDSTSA--IAEAIAQDKDLTKKLLSAAGVPVPNGRAVSDVDDAWEAALE 212 Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P V+KPL G G+ V + + + +S + D +L+E+Y+ G + V+ Sbjct: 213 IGLPVVVKPLDGNQGKGVTVNVTSREQLAAAYATASEFR--DAILVERYLPGNDFRLLVV 270 Query: 183 GD 184 GD Sbjct: 271 GD 272 >gi|271967673|ref|YP_003341869.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Streptosporangium roseum DSM 43021] gi|270510848|gb|ACZ89126.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Streptosporangium roseum DSM 43021] Length = 656 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 16/183 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+R+K VS+ GVPV P + + + P +IKP GG G+++++ + Sbjct: 111 DKIRAKATVSAAGVPVVPGGAEPGDDLAAAAERVGFPALIKPSAGGGGKGMVLVRTAAEL 170 Query: 151 PLDLLQSSSWNH----GD-QLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSY 202 P D L+S+ GD LLIE++V+ IE+ VM D +V + + Sbjct: 171 P-DALESARRTAAAAFGDATLLIERFVENPRHIEIQ--VMADTHGNVVHLGERECSLQRR 227 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + +L A + A A +++G G +F+ + +++E+ Sbjct: 228 HQKIIEEAPSPLLDAA----TRASMGAAAVEAARSVGYVGAGTVEFIVQGATGDYYFMEM 283 Query: 263 NVQ 265 N + Sbjct: 284 NTR 286 >gi|294665370|ref|ZP_06730660.1| ribosomal protein S6 modification protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604873|gb|EFF48234.1| ribosomal protein S6 modification protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 255 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 35 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 93 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 94 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 151 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q +A + +A+G Sbjct: 152 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 202 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + +R LE+N PG+ V Sbjct: 203 -AVAGVDLIRS--TRGPLVLEVNSTPGLEGV 230 >gi|291276719|ref|YP_003516491.1| putative ligase/carboxylase [Helicobacter mustelae 12198] gi|290963913|emb|CBG39750.1| putative ligase/carboxylase [Helicobacter mustelae 12198] Length = 415 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 119/275 (43%), Gaps = 47/275 (17%) Query: 3 VLMGGISSEREVSLSSGKACASAL-----EDAGFKVS-------QIDVDRSVGLVLA-HL 49 VL+G RE +L + + AL ++A F + Q D + + L+ Sbjct: 8 VLLGANQYLRERALKGAREVSDALIFIADKNAKFNKNRYFDGALQADSNDAQSLIQCIQE 67 Query: 50 KPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 K L F +L D ++++ E+ +P+ ++ +A + KM+ K GVP Sbjct: 68 KQSLGFKLLSVIPLNDWVLKSANEINAFFHLPHLSLEVIENARNKYKMKCK--FKEHGVP 125 Query: 107 VCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQS--SSW 160 P L+ ++ +I P +IKP G S G+ + + K+ S L L ++ + + Sbjct: 126 SSPFFLLEHEEELAKAIEVIGFPMIIKPYDFGGSGGVYLARNPKEASEKLALSKAIIAQY 185 Query: 161 NH-----GDQLLIEQYVD-----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + GD+ LIE+Y+D +E+ C +L VTE + ++S Sbjct: 186 KNAFKIAGDKYLIEKYIDTQEEVSVEVLCFKDKCITLSVTEKYLSPKPYFS--------E 237 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 H++P+ LD ++L +AH A C GI + Sbjct: 238 MAHLVPSHRNLD-----KKLNEIAHNAALCLGIDK 267 >gi|83414173|dbj|BAE53877.1| D-alanine:D-alanine ligase [Streptococcus anginosus] gi|83415064|dbj|BAE53791.1| D-alanine:D-alanine ligase [Streptococcus constellatus subsp. pharyngis] gi|219564703|dbj|BAH03888.1| D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 96 Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++LIEQ V+ E+ G++ + + + E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAK+ D+ +++ A A AIG G++R DF Sbjct: 64 PAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96 >gi|77166875|gb|ABA62412.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166885|gb|ABA62417.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166889|gb|ABA62419.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166891|gb|ABA62420.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166893|gb|ABA62421.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166895|gb|ABA62422.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166907|gb|ABA62428.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166909|gb|ABA62429.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166911|gb|ABA62430.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166913|gb|ABA62431.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166917|gb|ABA62433.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166921|gb|ABA62435.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|77166927|gb|ABA62438.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 ++ D++KEV+++A ++ + C +R D L Sbjct: 62 ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|77166903|gb|ABA62426.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 ++ D++KEV+++A ++ + C +R D L Sbjct: 62 ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|83772212|dbj|BAE62342.1| unnamed protein product [Aspergillus oryzae] Length = 524 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+++KQ+ + C VPV P++ R T D + + + P +IK + GG GI +++ Sbjct: 119 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 176 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++ + + +++ + + +E+ VDG + V+GD +DV + Sbjct: 177 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 235 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 K + + ++ + R+A +AI R + +FL R+ ++LEIN Sbjct: 236 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 291 >gi|228949279|ref|ZP_04111543.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810405|gb|EEM56762.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 399 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 31/190 (16%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----------LDLLQSSSWNHGDQLLI 168 +++IS P V+KPL G S+G +KK +SI +D + ++N ++L+ Sbjct: 129 QENIISFPCVVKPLSGFGSIG---VKKVESIDELNNIIKIHSLIDKVSLKNFNPKHKVLV 185 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYK 225 E+Y+ G+E ++ +T + K Y Y+ +Y V P + D+Y Sbjct: 186 EEYISGVEYAVDIIWQNRKPLTTVVTCKGVMKGPYFYDREY-----ILVSPKE---DLYT 237 Query: 226 EVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG-Y 283 E+++ A ++ +G G + ++ FD +++ +E +PG F ++A + Y Sbjct: 238 ELEKAAVRVNKCLGIINGATHTELKFD--KDQIYCIESTCRPG--AAGAFYKLAELSTEY 293 Query: 284 SFRELLLWMV 293 F LL + + Sbjct: 294 RFFNLLYYTL 303 >gi|325928493|ref|ZP_08189684.1| SSU ribosomal protein S6P modification protein [Xanthomonas perforans 91-118] gi|325541210|gb|EGD12761.1| SSU ribosomal protein S6P modification protein [Xanthomonas perforans 91-118] Length = 305 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 85 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q +A + +A+G Sbjct: 202 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 252 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280 >gi|222522035|gb|ACM62792.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522053|gb|ACM62801.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522057|gb|ACM62803.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] Length = 118 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K +SI L + + + ++LIEQ V E+ G++G+ Sbjct: 2 PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 ++ T E+ + FY Y+ KY + +PA I I +++ A A +AIG G Sbjct: 59 NVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACG 117 Query: 243 I 243 + Sbjct: 118 L 118 >gi|84029433|sp|Q8PHK1|RIMK_XANAC RecName: Full=Ribosomal protein S6 modification protein Length = 295 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q +A + +A+G Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--RRGPLVLEVNSTPGLEGV 270 >gi|115384442|ref|XP_001208768.1| predicted protein [Aspergillus terreus NIH2624] gi|114196460|gb|EAU38160.1| predicted protein [Aspergillus terreus NIH2624] Length = 292 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 49/279 (17%) Query: 60 GNFGEDGLVQAILELLEIPYTH----SGI--LASALSMDKMRSKQ--VVSSCGVPVCPSI 111 G+ +D ++ I E L+ H GI L + L+ + V+ +P P + Sbjct: 9 GDLADDTTIKGISEALQTLGHHVIHVPGIKPLVNHLASGDQKDWDLMVLKHHNIPTSPFL 68 Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ------SIPLDLLQSSS 159 +V R +T+ L P + KP+ +S GI K Q S+ DL S Sbjct: 69 VVPRLGEPVDYTLLEDQLPYPLFA-KPVAASTSNGITASNKIQKKEKFRSVVEDL--RSQ 125 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIA--VPKS--------DFYSYELK 205 + D +L+E ++ G E T G++G L V+E+ PK DF + K Sbjct: 126 FPEQD-VLVETFLAGREFTVGILGTGEDARVLGVSEVTWYNPKGGCDEDGCVDFATIFSK 184 Query: 206 YSS----LNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP--LSRKVF 258 + THV L D V ++A A++ +GCR R D F P + Sbjct: 185 SGGADKDMGHTHVELEGD---DQMARVSQVALDAYKGLGCRDAGRVDVRFGPDGDGSNPY 241 Query: 259 WLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 +E+N G+ P S++ +A G S+ +LL ++E+A Sbjct: 242 VIEVNPIFGLNPNHSLYTWIAKNNGLSYTDLLQNIIENA 280 >gi|77166923|gb|ABA62436.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 ++ D++KEV+++A ++ + C +R D L Sbjct: 62 ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|110598072|ref|ZP_01386351.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans DSM 13031] gi|110340331|gb|EAT58825.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans DSM 13031] Length = 489 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 22/233 (9%) Query: 52 DLAFNVLHGNFGED--GL-VQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGV- 105 DL N+ G+F D G+ V LE P+T AS+ D R K+V S G+ Sbjct: 58 DLFINLCDGSFDSDCAGIEVVQTLEYFNAPFTG----ASSDFYDPTREDMKRVARSFGID 113 Query: 106 -PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHG 163 P+ ++ ++ + P ++K +S+G+ + ++ +++ Sbjct: 114 TPLHRFVVTEADIKEAAENLRFPLIVKHPNSYASIGMTKTSRTETPEAFKVEAERIVREF 173 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVL 215 + L+E++V+G E T V +A +A P + F ++LK+S + + Sbjct: 174 GEALVEEFVEGREFTVLVAENAEDAANPVAFPAVEFVFPEGESFKHFDLKWSDYEDMNCI 233 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 P + P D+ + ++ ++ + G R D D R +F LEIN G+ Sbjct: 234 PVEDP-DLDRRLRTISAQLFTGLNGSGYGRCDIRMDGEGR-LFMLEINPNCGV 284 >gi|315105144|gb|EFT77120.1| conserved domain protein [Propionibacterium acnes HL050PA2] Length = 123 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 18 PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 R VF LE PGMT +S+ P AG E+ +V+D + Sbjct: 78 RPVF-LEAGAAPGMTAISLVPVAMKAAGLDLGEVCSRLVDDVA 119 >gi|327405075|ref|YP_004345913.1| 30S ribosomal protein S6P modification protein [Fluviicola taffensis DSM 16823] gi|327320583|gb|AEA45075.1| SSU ribosomal protein S6P modification protein [Fluviicola taffensis DSM 16823] Length = 292 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 92/189 (48%), Gaps = 22/189 (11%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145 S DK+R QV+S G+ + ++ N ++ + +H++S P V+K L+G LG +V+ Sbjct: 97 SRDKLRCLQVLSKEGIGLPKTVFTN-YSRNVEHVVSSAGGAPVVLKLLEGTQGLG-VVLA 154 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++Q+ +L++ + ++++++++ G ++ V+ + + + +F S Sbjct: 155 ENQNAAQSVLEAFNGLKA-RVIVQEFIKEAGGADIRAFVVDGEVVGAMKRQGKEGEFRS- 212 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + H L + +E +R A A +A+G G++ D L SR LE+ Sbjct: 213 --------NLHRGGTATILQLTEEEKRTAIKAAEAVGL-GVAGVDLLQS--SRGPLVLEV 261 Query: 263 NVQPGMTPV 271 N PG+ + Sbjct: 262 NSSPGLEGI 270 >gi|77166883|gb|ABA62416.1| D-alanine-D-alanine ligase [Clostridium perfringens] gi|313192181|emb|CBX19950.1| D alanine-D alanine ligase [Clostridium perfringens] Length = 106 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 K+ +++KEV+++A ++ + C +R D L Sbjct: 62 KLNENLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|29831820|ref|NP_826454.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces avermitilis MA-4680] gi|29608937|dbj|BAC72989.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces avermitilis MA-4680] Length = 700 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A A+S+ DK+R+K+ V + GVPV P S L + +D+ I P ++KP GG Sbjct: 104 GPPADAISLMGDKIRAKETVQAVGVPVVPGSSGSGLTDAQLVDAAREIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 G+ +++ ++ + ++ + D LL+E++VD Sbjct: 164 GGKGMRLVRDERLLADEIAAARREARASFGDDTLLVERWVD 204 >gi|83414161|dbj|BAE53871.1| D-alanine:D-alanine ligase [Streptococcus cristatus] Length = 96 Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V+ E+ G++G+ + T E+ V FY YE KY T + Sbjct: 5 AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI + ++ A A +A+G +G++R DF Sbjct: 64 PAKISDEAISIMRTNAETAFRALGGQGLARCDF 96 >gi|78048923|ref|YP_365098.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84029434|sp|Q3BQ65|RIMK_XANC5 RecName: Full=Ribosomal protein S6 modification protein gi|78037353|emb|CAJ25098.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 295 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q +A + +A+G Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVTEATEQEQEVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 T-VAGVDLIRS--KRGPLVLEVNSTPGLEGV 270 >gi|238495280|ref|XP_002378876.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357] gi|220695526|gb|EED51869.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357] Length = 646 Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+++KQ+ + C VPV P++ R T D + + + P +IK + GG GI +++ Sbjct: 118 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 175 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++ + + +++ + + +E+ VDG + V+GD +DV + Sbjct: 176 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 234 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 K + + ++ + R+A +AI R + +FL R+ ++LEIN Sbjct: 235 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 290 >gi|290960184|ref|YP_003491366.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces scabiei 87.22] gi|260649710|emb|CBG72825.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces scabiei 87.22] Length = 689 Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A A+S+ DK+R+K+ V + GVPV P S L + D+ H I P ++KP GG Sbjct: 106 GPPADAISLMGDKIRAKETVRAAGVPVVPGSSGSGLTDGELADAAHEIGMPVLLKPSAGG 165 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 G+ +++ + ++ + D LL+E+++D Sbjct: 166 GGKGMRLVRDAGQLAEEIAAARREARASFGDDTLLVERWID 206 >gi|291439490|ref|ZP_06578880.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces ghanaensis ATCC 14672] gi|291342385|gb|EFE69341.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces ghanaensis ATCC 14672] Length = 656 Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ Sbjct: 119 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAQLADAARGIGMPVLLKPSAGGGGKGM 178 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ ++ +L + D LL+E+++D Sbjct: 179 RLVRDASALADELAAARREARASFGDDTLLVERWID 214 >gi|226940887|ref|YP_002795961.1| Cyanophycin synthetase [Laribacter hongkongensis HLHK9] gi|226715814|gb|ACO74952.1| Cyanophycin synthetase [Laribacter hongkongensis HLHK9] Length = 710 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 22/190 (11%) Query: 12 REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLA-------------FNV 57 RE ++ + +A+ED F V+ V R +V H L P A + Sbjct: 124 REALFAARELVLAAMEDRPFDVAAT-VQRLRDMVDDHCLGPSTASIVDAADDRDIPYIRL 182 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 GN + G +A+ + + +A +S DK +KQ++S+CGVPV V Sbjct: 183 NSGNLVQFGYGRALRRIWTAETDQTSAIAEGISRDKDLTKQLLSACGVPVPEGRYVKNAE 242 Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVD 173 + I P V+KP G G+ + +++Q+ + G +++E++V Sbjct: 243 EAWEAAEDIGLPVVVKPYDGNHGRGVFTNLHTRD---EVMQAYGVAIEEGSGVIVERFVT 299 Query: 174 GIELTCGVMG 183 GIE V+G Sbjct: 300 GIEHRLLVVG 309 >gi|149908009|ref|ZP_01896677.1| D-alanylalanine synthetase [Moritella sp. PE36] gi|149809015|gb|EDM68946.1| D-alanylalanine synthetase [Moritella sp. PE36] Length = 384 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 127/308 (41%), Gaps = 44/308 (14%) Query: 23 ASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEI 77 A AL ++GF+ IDV + + L L DL G G D + ++LE+L + Sbjct: 55 ADALRESGFQ--HIDVLPENMDLPQRLKALNIDLVITNSGGLQGFDSMCHLPSMLEMLGV 112 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----------VNRFTMDS-QHLISP 126 PY + + L +K K + + G+P P I VN+ +D Sbjct: 113 PYVGHSPMTAGLLDNKHLFKHEIKAAGIPTAPFITVGLGECITDAVNKEALDQIDADFGG 172 Query: 127 PYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +++KP+ G +S+ + + + D + + ++Q+++ N ++IE Y+ G E V G Sbjct: 173 RFIVKPVSGRASIHVYPVFDRADLAGKVKIVQAATNN---IVMIEPYLSGREFVVAVAGS 229 Query: 185 A--------------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + VTE + + + + S +L P ++ + + L Sbjct: 230 VIFKNDKLNQLDSPFAFSVTERVLADDEPIFTSMDVKPITSDRLLKVDEP-ELRQSLIDL 288 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT-----PVSIFPEMAAYAGYSF 285 +Q +G + R D D K++ LE N +P + +SI G S+ Sbjct: 289 GNKIYQQLGLGTLVRVDLRMD-CKGKLYVLEANPKPDLKRPEGDKLSIVCHDIHNEGMSY 347 Query: 286 RELLLWMV 293 ++L+ +V Sbjct: 348 QDLIQSLV 355 >gi|193872892|gb|ACF23136.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L+EQ V E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLVEQGVIAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PA I D+ +++ A A +AIG G+SR DF Sbjct: 64 PANISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|153813211|ref|ZP_01965879.1| hypothetical protein RUMOBE_03627 [Ruminococcus obeum ATCC 29174] gi|149830742|gb|EDM85833.1| hypothetical protein RUMOBE_03627 [Ruminococcus obeum ATCC 29174] Length = 343 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 92 DKMRSKQVVSSCGVPV-----CPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK ++++S G+P P+ N + + + + P + KPL S GI +IK Sbjct: 24 DKSACRELLSKLGLPTPGFVKVPAAEQNEYKLAEITAGLKYPLISKPLDKYGSRGIFIIK 83 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-MGDASLDVTEIA-VPKSDFYSYE 203 + + + +++ + D++LIE+Y DG E + D ++ V IA K+ F E Sbjct: 84 DQEQLAGSVRKTAEFTDLDEILIEEYNDGFEFNMMTWVSDGAVRVISIADREKTQFAEGE 143 Query: 204 LKYSSLN 210 L S+ N Sbjct: 144 LPESTRN 150 >gi|91774016|ref|YP_566708.1| hypothetical protein Mbur_2084 [Methanococcoides burtonii DSM 6242] gi|91713031|gb|ABE52958.1| ATP-binding protein with DUF201 domain, pyrrolysine biosynthesis [Methanococcoides burtonii DSM 6242] Length = 362 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 44/195 (22%) Query: 86 ASALSMDKMRSKQVVSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 A +SMDK RSK+ +S +P PS PPY +KP SS+G Sbjct: 97 AYHISMDKKRSKEYFTSIDIPTPGDRPS--------------QPPYFVKPPCESSSIGTH 142 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFY 200 +I D + + G +L+E+Y++G ++ V+GD V E V D Y Sbjct: 143 IIYDDSELA---------DVGPNMLVEEYLEGNVISLEVIGDGKHFAVVKETKVHIDDTY 193 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 H++ P++ + + +++ Q + +GI + + K+ L Sbjct: 194 ----------DCHMI---TPVEHDPKFREISYRLAQGLNLKGIMDVEAIVSEKGLKI--L 238 Query: 261 EINVQ-PGMTPVSIF 274 EI+ + P TP+ ++ Sbjct: 239 EIDARFPSQTPIVVY 253 >gi|222522041|gb|ACM62795.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522051|gb|ACM62800.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522063|gb|ACM62806.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] Length = 118 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K +SI L + + + ++LIEQ V E+ G++G+ Sbjct: 2 PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ + FY Y+ KY + +PA I I +++ A A +AIG G Sbjct: 59 KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPAAIDEGITSQMRYFAEQAFKAIGACG 117 Query: 243 I 243 + Sbjct: 118 L 118 >gi|302545216|ref|ZP_07297558.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302462834|gb|EFL25927.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 528 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P S L + +D+ I P ++KP GG G+ ++ +D Sbjct: 124 DKIRAKETVRAAGVPVVPGSSGSGLTDAQLIDAAREIGTPVLLKPSAGGGGKGMRLV-RD 182 Query: 148 QSIPLDLLQSSSWNHG-----DQLLIEQYVD 173 +++ D + ++ D LL+E+++D Sbjct: 183 EALLADEIAAARREARGAFGDDTLLVERWID 213 >gi|239931121|ref|ZP_04688074.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces ghanaensis ATCC 14672] Length = 646 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAQLADAARGIGMPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ ++ +L + D LL+E+++D Sbjct: 169 RLVRDASALADELAAARREARASFGDDTLLVERWID 204 >gi|222522029|gb|ACM62789.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522031|gb|ACM62790.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522033|gb|ACM62791.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522037|gb|ACM62793.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522039|gb|ACM62794.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522043|gb|ACM62796.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522045|gb|ACM62797.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522047|gb|ACM62798.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522049|gb|ACM62799.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522055|gb|ACM62802.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522059|gb|ACM62804.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522061|gb|ACM62805.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522067|gb|ACM62808.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] gi|222522069|gb|ACM62809.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] Length = 118 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K +SI L + + + ++LIEQ V E+ G++G+ Sbjct: 2 PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ + FY Y+ KY + +PA I I +++ A A +AIG G Sbjct: 59 KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACG 117 Query: 243 I 243 + Sbjct: 118 L 118 >gi|187477731|ref|YP_785755.1| cyanophycin synthetase [Bordetella avium 197N] gi|115422317|emb|CAJ48841.1| cyanophycin synthetase [Bordetella avium 197N] Length = 870 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%) Query: 24 SALEDAGFKVSQI--DVDRSVG----------LVLAHLKPDLAFNVL-HGNFGEDGLVQA 70 +A+ED F V+Q D+ R V +V A D+A+ L GN + G Sbjct: 138 AAIEDRDFDVAQTVADLRRLVDRHCLGPSTACIVDAADDRDIAYTRLFEGNLVQFGYGAR 197 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPY 128 + + +A +S DK +K ++ +CGVPV LV+ + I P Sbjct: 198 QRRIWTAETDRTSAIAEGISRDKDLTKSILETCGVPVPEGHLVDSVEQAWAAAERIGLPV 257 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 VIKP G G+ + ++ + + + G +++E++V G E V+GD Sbjct: 258 VIKPYDGNHGRGVFTNLSTRE-EVESAYAVAVDEGSGVIVERFVPGNEHRLLVVGD 312 >gi|226507364|ref|NP_001147055.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays] gi|195606940|gb|ACG25300.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays] Length = 751 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 27/190 (14%) Query: 92 DKMRSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIK 145 DK SK+++ + GVP+ P V +++ I P +IKP GG G+ IV + Sbjct: 167 DKSASKRIMGAAGVPLVPGYHGADQDVELLKLEADK-IGYPVLIKPTHGGGGKGMRIVER 225 Query: 146 KDQSIP--LDLLQSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201 D+ + L + ++ + G + LLIE+Y+ + V GD + Y Sbjct: 226 PDEFVDSVLSAQREAAASFGVNTLLIEKYITQPRHVEVQVFGDQHGNA---------IYL 276 Query: 202 YELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 YE + SL H PA +P + + A A +A+G +F+ D LS Sbjct: 277 YE-RDCSLQRRHQKIIEEAPAPNVPAEFRSHIGGAAVSAAKAVGYYNAGTVEFIVDTLSG 335 Query: 256 KVFWLEINVQ 265 + +++E+N + Sbjct: 336 EFYFMEMNTR 345 >gi|157383858|gb|ABV49320.1| D-ala-D-ala ligase-like protein [Streptococcus uberis] Length = 118 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K +SI L + + + ++LIEQ V E+ G++G+ Sbjct: 2 PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58 Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + T E+ + FY Y+ KY + +PA I I +++ A A +AIG G Sbjct: 59 KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGISSQMRYFAEQAFKAIGACG 117 Query: 243 I 243 + Sbjct: 118 L 118 >gi|297199865|ref|ZP_06917262.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus ATCC 29083] gi|197710330|gb|EDY54364.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus ATCC 29083] Length = 637 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A AL DK+R+K+ V + GVPV P +++ + P ++KP GG G+ +++ Sbjct: 109 AIALMGDKIRAKETVEAAGVPVVPGGRDPEL-VEAARALGAPVLLKPSAGGGGKGMRLVR 167 Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ I ++ + D LL+E++VD Sbjct: 168 DLTVLEEEIAAARREARTSFGDDTLLVERWVD 199 >gi|255940068|ref|XP_002560803.1| Pc16g04520 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585426|emb|CAP93122.1| Pc16g04520 [Penicillium chrysogenum Wisconsin 54-1255] Length = 633 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 88 ALSMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 L +K +++Q+ ++ C + P L N + D L + P +IKP KG S G+ + Sbjct: 276 GLVQNKFKARQLDTNDFCRLVRSPEDLENMLSKDGPQL-AYPLIIKPAKGWCSEGVWKVA 334 Query: 146 KDQSI--PLDLLQSSSWN--HGDQLLIEQYVDGIELTCGVM 182 +Q + + LL S+ HG++++IE YV+G E+ ++ Sbjct: 335 NEQELLEKVHLLWRESFTAWHGNEVVIETYVEGPEIDANIV 375 >gi|328882613|emb|CCA55852.1| Methylcrotonyl-CoA carboxylase subunit [Streptomyces venezuelae ATCC 10712] Length = 647 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G ASA+S+ DK+R+K+ V + GVPV P ++ L + P ++KP GG G Sbjct: 110 GPPASAISLMGDKIRAKETVQAAGVPVVPGAADPELEAAARELGA-PVLLKPSAGGGGKG 168 Query: 141 IIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + +++ I ++ S D LL+E+++D Sbjct: 169 MRLVRDLSTLSDEIAAARREARSSFGDDTLLVERWID 205 >gi|170077261|ref|YP_001733899.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002] gi|169884930|gb|ACA98643.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002] Length = 384 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%) Query: 23 ASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPY 79 A+ALED GF+ V + D ++G L + LA+ G G + + AILE+L +PY Sbjct: 59 AAALEDLGFQHVFVLPDDATLGDRLRKHQIHLAWLNTGGVQGYNPVCHTPAILEMLGVPY 118 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP-------Y 128 L S++ +K K+ + G P P ++ + +FT + Sbjct: 119 IGHNPLNSSILDNKHSFKRELQGLGFPTAPFMIWHPAQGKFTAKDNARFQQTFGDYQGSF 178 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++KP+ G +SL I + + Q + + H + LIE ++ G E V G Sbjct: 179 LVKPVSGRASLNIHFVDQPQDLGEAIANIHQQTH-NTALIEPFLTGREFCVSVCG 232 >gi|302532420|ref|ZP_07284762.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C] gi|302441315|gb|EFL13131.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C] Length = 434 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 8/176 (4%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126 V I E + +P+T + A+ + K R +QV+++ GV +V F + Sbjct: 111 VARIAEEIGVPFTDAA--AAETAKQKDRCRQVLAAAGVDTTRYAVVGGFEEAAAFAAGGG 168 Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P V+KP +G S G V+ ++ + L + + +L+E+Y+ G +G Sbjct: 169 YPVVVKPARGSGSEGAHVVADEEQLAGVLAGAPDGAYAAGILVEEYLSG-RFVSAEIGLV 227 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +AV + + ++ +L + +PA I + + V R A A+G R Sbjct: 228 HGRFLRLAVSERSTWH---RHEALETGTTIPAGISAEEHDRVMRFAEEVVGAVGLR 280 >gi|314965741|gb|EFT09840.1| conserved domain protein [Propionibacterium acnes HL082PA2] gi|314982883|gb|EFT26975.1| conserved domain protein [Propionibacterium acnes HL110PA3] gi|315091192|gb|EFT63168.1| conserved domain protein [Propionibacterium acnes HL110PA4] gi|315094423|gb|EFT66399.1| conserved domain protein [Propionibacterium acnes HL060PA1] gi|327328919|gb|EGE70679.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1] Length = 123 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 18 PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 R VF LE PGMT S+ P AG E+ +V+D + Sbjct: 78 RPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 119 >gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002] gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002] Length = 897 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 10/102 (9%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 SGILA L+ DK +K +++ GVPV P V R+ D + I P VIKPL G Sbjct: 207 NQSGILAVELACDKEGTKNILADAGVPV-PRGTVIRYLDDLEDAIEDVGGYPIVIKPLDG 265 Query: 136 GSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI + K D DL +S +++E+Y G Sbjct: 266 NHGRGITIDIKTWADAEHAYDLASEASKTR--SVIVERYYKG 305 >gi|332707486|ref|ZP_08427532.1| D-alanine-D-alanine ligase family ATP-grasp enzyme [Lyngbya majuscula 3L] gi|332353744|gb|EGJ33238.1| D-alanine-D-alanine ligase family ATP-grasp enzyme [Lyngbya majuscula 3L] Length = 89 Score = 43.5 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I PP VIKP +S G+ ++K D +++ H DQ+L+E+Y++ G E+ CG++ Sbjct: 22 IKPPVVIKPASSDNSCGVTLVKNVAD--YDAALKTAFEHSDQVLVEEYIELGREVRCGIL 79 >gi|193872870|gb|ACF23125.1| D-alanine-D-alanine ligase [Streptococcus mitis] Length = 96 Score = 43.5 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215 ++ + ++L Q V+ E+ G++G+ + T E+ V FY Y+ KY T + Sbjct: 5 AFQYDSRVLGRQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 PAKI D+ +++ A A +AIG G+SR DF Sbjct: 64 PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96 >gi|239917214|ref|YP_002956772.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus NCTC 2665] gi|281414312|ref|ZP_06246054.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus NCTC 2665] gi|239838421|gb|ACS30218.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus NCTC 2665] Length = 709 Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 DK+R+K+ V++ VPV P I T D+Q + P +IKP GG G++ ++ Sbjct: 125 DKIRAKETVAAYDVPVVPGIQDPTLT-DAQITAEAERVGFPLLIKPSAGGGGKGMVAVRA 183 Query: 147 DQSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201 + +P L + D LL+E+ + + V DA + Sbjct: 184 AEELPGALASARRTARSAFGDDTLLLERLITAPRHVEVQVFADAHGATVHLG-------E 236 Query: 202 YELKYSSLNSTHVLPAKIPL--------DIYKEVQRLAFLAHQAIGCRGISRSDFLF-DP 252 E + + A PL ++ + + R A A ++G RG +FL D Sbjct: 237 RECSLQRRHQKVIEEAPAPLLTGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFLVSDE 296 Query: 253 LSRKVFWLEINVQ 265 + F++E+N + Sbjct: 297 NPDEFFFMEMNTR 309 >gi|296808829|ref|XP_002844753.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238844236|gb|EEQ33898.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 515 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 86 ASALSMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 A L+ +K ++Q+ + C + P+ L + + L + P ++KP KG SS G+ Sbjct: 157 AVGLAQNKFATRQLDKNIFCRLVCSPADLEQMLSQEGPQL-TYPLIVKPSKGWSSEGVWK 215 Query: 144 IKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASL---DVTEIAVP 195 ++ +Q +PL +S + HG ++IE Y+DG E+ V+ D + +V + Sbjct: 216 VENEQELREKVPLLWRESFTAWHGHDVVIETYIDGPEVDANMVLVDGEIVYFEVNDDFPS 275 Query: 196 KSDFYSYELKYSSLN---STHVLPAKIP 220 D+ + E N ++++LP+ +P Sbjct: 276 AGDYATGETDARVANFVETSNMLPSALP 303 >gi|284040918|ref|YP_003390848.1| alpha-L-glutamate ligase, RimK family [Spirosoma linguale DSM 74] gi|283820211|gb|ADB42049.1| alpha-L-glutamate ligase, RimK family [Spirosoma linguale DSM 74] Length = 302 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 28/211 (13%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLI----SPPYVIKPLKGGSSLGIIVI 144 S +K+RS QV+S GV + +I N D LI PP VIK L+G +G+++ Sbjct: 97 SRNKLRSLQVLSKAGVGLPKTIFANHPKNGDVTQLIKLVGGPPVVIKLLEGTQGIGVVLA 156 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + ++ + + + +L++++V G ++ V+G + + + +F S Sbjct: 157 ETTKAAKSTI--EAFYGLKKHVLVQEFVAEAKGSDIRAFVVGGRVVGAIKRQGLEGEFRS 214 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + H + + + + ++ A A +A+G + ++ D L P R LE Sbjct: 215 ---------NIHRGGNAVTVTLTPDEEQTAVAAARALGLK-VAGVDML--PSDRGPLVLE 262 Query: 262 INVQPGM------TPVSIFPEMAAYAGYSFR 286 +N PG+ T V I E+ AY R Sbjct: 263 VNSSPGLEGIEKATGVDIATEVIAYIEEKIR 293 >gi|86605337|ref|YP_474100.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab] gi|86553879|gb|ABC98837.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab] Length = 431 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 14/195 (7%) Query: 67 LVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 LV+ I++ + +P A+ L K+ +KQ++ G+P P++ + HL Sbjct: 76 LVEGIVDAFQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTAPAVGFADLSEALAHL 135 Query: 124 ISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 S Y + K G + G + + +++ + L+++ GDQ+LIE+++ G E++ + Sbjct: 136 NSRSYPVVIKKDGLAAGKGVTVAQNREEAVQALEAALAKPGDQVLIEEFIPGQEVSVLAL 195 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ------ 236 D + V +P + Y + + +T + A P D + LA + Q Sbjct: 196 TDGQICVP---LPPAQDYKRLGEGDTGPNTGGMGAHAPADHLVTPEGLARIQTQILDPTL 252 Query: 237 -AIGCRGISRSDFLF 250 A+ RGI ++ Sbjct: 253 EALQRRGIRYQGVIY 267 >gi|317149912|ref|XP_001823475.2| hypothetical protein AOR_1_1728114 [Aspergillus oryzae RIB40] Length = 1086 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+++KQ+ + C VPV P++ R T D + + + P +IK + GG GI +++ Sbjct: 140 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 197 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++ + + +++ + + +E+ VDG + V+GD +DV + Sbjct: 198 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 256 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 K + + ++ + R+A +AI R + +FL R+ ++LEIN Sbjct: 257 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 312 >gi|302560530|ref|ZP_07312872.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces griseoflavus Tu4000] gi|302478148|gb|EFL41241.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces griseoflavus Tu4000] Length = 648 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + ++ I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVKAAGVPVVPGSSGSGLTDEQLAEAAREIGVPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG-----DQLLIEQYVD 173 ++ +D S+ D + ++ D LL+E+++D Sbjct: 169 RLV-RDVSVLADEIAAARREARASFGDDTLLVERWID 204 >gi|85374184|ref|YP_458246.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594] gi|84787267|gb|ABC63449.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594] Length = 336 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 42/313 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH-- 59 A+ GG+ E S LE G ++ D R ++ D F +L+ Sbjct: 26 ALWGGGMHPEDGNHAIYHHEVRSTLEGMGLNLALADTYR---VLFDTPDADFVFPLLNRG 82 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G + L+ + + IPY + L DK SK V + GVP R + Sbjct: 83 GFVNSEMLIPTLCNMHRIPYLGAMPFLRGLGDDKSVSKLVSTHAGVPTADWFCFRRGAPV 142 Query: 119 DSQHLISPP---YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + L + P +VIKP +S GI Q + + G ++E Y+DG Sbjct: 143 EEASLPAAPDGRWVIKPNASSASWGISDAFDFQGVANAIANIHG--QGHDAIVEPYLDGY 200 Query: 176 ELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKI-------P 220 ++ C + ++D A+P ++Y K + +T K P Sbjct: 201 DVQCAFI---TIDGEARALPMLWYEREDTQKLWTYYEKRDLVQNTEKAALKTFDNPDFAP 257 Query: 221 L--DIYKEVQR--LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 L D+ ++V R L F R +F D + ++EIN+ + + + Sbjct: 258 LITDMARKVARELLPF---------DYGRIEFRVDLEKGDINFIEINLNCNLWSEKVMAK 308 Query: 277 MAAYAGYSFRELL 289 A +AG+S +LL Sbjct: 309 AAKFAGFSHADLL 321 >gi|33602559|ref|NP_890119.1| cyanophycin synthetase [Bordetella bronchiseptica RB50] gi|33576998|emb|CAE34078.1| cyanophycin synthetase [Bordetella bronchiseptica RB50] Length = 879 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 7/104 (6%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142 +A +S DK +K+++S+CGVPV LV ++ I P V+KP G G+ Sbjct: 220 IAEGISRDKDLTKELLSTCGVPVPEGRLVQSAVDAWEAAQDIGLPVVVKPYDGNHGRGVF 279 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 ++ +D+ ++ + + + G +++E+++ G E V+GD Sbjct: 280 TNLLTRDE---IESAYAVAVDEGSGVIVERFITGNEHRLLVVGD 320 >gi|21232538|ref|NP_638455.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767376|ref|YP_242138.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris str. 8004] gi|81306644|sp|Q4UXV5|RIMK_XANC8 RecName: Full=Ribosomal protein S6 modification protein gi|81793071|sp|Q8P665|RIMK_XANCP RecName: Full=Ribosomal protein S6 modification protein gi|21114331|gb|AAM42379.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572708|gb|AAY48118.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris str. 8004] Length = 291 Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q+++S G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + DF S L T + P + Q +A + +A+G Sbjct: 192 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 270 >gi|78777884|ref|YP_394199.1| S6 modification enzyme RimK [Sulfurimonas denitrificans DSM 1251] gi|78498424|gb|ABB44964.1| SSU ribosomal protein S6P modification protein [Sulfurimonas denitrificans DSM 1251] Length = 310 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 27/209 (12%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PP 127 E++++ ++ +G LA S DK+RS Q++S GV + ++ + + +++ +I P Sbjct: 80 FEMMDV-FSATGSLAIKRSRDKLRSLQILSKNGVDMPKTVFASNKS-NAKDVIELSGGAP 137 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVM 182 V+K L+G +G++++ +++ LD N LL+++Y++ G ++ ++ Sbjct: 138 LVLKILEGTQGVGVVLVDSEKAAKSVLDAFYGMDVN----LLVQEYIEEAGGADIRVFIV 193 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 G + + + DF S L + H L K+ + A A +A+G G Sbjct: 194 GGKIIGAMKRQGAEGDFRS-NLHQGGSATAHKLT--------KKEKETALAAAKAMGL-G 243 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 I D + +R +E+N PG+ + Sbjct: 244 ICGVDMIQS--NRGPLVMEVNSSPGLEGI 270 >gi|325962779|ref|YP_004240685.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Arthrobacter phenanthrenivorans Sphe3] gi|323468866|gb|ADX72551.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 745 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 20/147 (13%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 ID R G+ H P F + +F L+ I + GI A + DK+R Sbjct: 82 IDACRKAGVEAVH--PGYGFLSENADFAR------ALDQAGITFIGPGIDALDVMGDKIR 133 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS 149 SK V+ GVPV P V M + L++ P +IKP GG G+ V+++ Sbjct: 134 SKNHVAGYGVPVVPG--VAEPGMTDEQLVAAAAAVGFPLLIKPSAGGGGKGMHVVERAAD 191 Query: 150 IPLDLLQ----SSSWNHGDQLLIEQYV 172 +P L ++S D L +E+ V Sbjct: 192 LPATLATARRVAASAFGDDTLFLERLV 218 >gi|7157931|gb|AAF37345.1|AF170806_1 D-alanine:D-alanine ligase [Enterococcus mundtii] Length = 105 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIA 193 SS+GI K + L ++++ + + ++EQ ++ E+ V+G+ + T E+ Sbjct: 1 SSVGIT--KAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV- 57 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V FY Y+ KY + +PA++P +++++ Q A LA+ +G Sbjct: 58 VKDVAFYDYDAKYINNRIEMQIPAEVPEEVHQKAQEYAKLAYTMLG 103 >gi|326441274|ref|ZP_08216008.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces clavuligerus ATCC 27064] Length = 648 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELADAARETGMPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ ++P ++ + D LL+E+++D Sbjct: 169 RLVRDAAALPEEIAAARREARASFGDDTLLVERWID 204 >gi|84622761|ref|YP_450133.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84029435|sp|Q5H3K7|RIMK_XANOR RecName: Full=Ribosomal protein S6 modification protein gi|123766627|sp|Q2P6G8|RIMK_XANOM RecName: Full=Ribosomal protein S6 modification protein gi|84366701|dbj|BAE67859.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 295 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ + DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + D + + +A + +A+G Sbjct: 192 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 270 >gi|254393027|ref|ZP_05008190.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces clavuligerus ATCC 27064] gi|294812775|ref|ZP_06771418.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces clavuligerus ATCC 27064] gi|197706677|gb|EDY52489.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces clavuligerus ATCC 27064] gi|294325374|gb|EFG07017.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces clavuligerus ATCC 27064] Length = 650 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + D+ P ++KP GG G+ Sbjct: 111 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELADAARETGMPVLLKPSAGGGGKGM 170 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ ++P ++ + D LL+E+++D Sbjct: 171 RLVRDAAALPEEIAAARREARASFGDDTLLVERWID 206 >gi|33592810|ref|NP_880454.1| cyanophycin synthetase [Bordetella pertussis Tohama I] gi|33572458|emb|CAE42027.1| cyanophycin synthetase [Bordetella pertussis Tohama I] gi|332382223|gb|AEE67070.1| cyanophycin synthetase [Bordetella pertussis CS] Length = 857 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138 + +A +S DK +K+++S+CGVPV LV ++ I P V+KP G Sbjct: 216 RTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVQSAADAWEAAQDIGLPVVVKPYDGNHG 275 Query: 139 LGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 G+ ++ +D+ ++ + + + G +++E+++ G E V+GD Sbjct: 276 RGVFTNLLTRDE---IESAYAVAVDEGSGVIVERFITGNEHRLLVVGD 320 >gi|294624280|ref|ZP_06702987.1| ribosomal protein S6 modification protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601423|gb|EFF45453.1| ribosomal protein S6 modification protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 305 Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 85 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + ++ Q +A + +A+G Sbjct: 202 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 252 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + +R L++N PG+ V Sbjct: 253 -AVAGVDLIRS--TRGPLVLKVNSTPGLEGV 280 >gi|213421203|ref|ZP_03354269.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 104 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 D+ F ++HG GEDG +Q +L + +P+ S +L+SA MDK Sbjct: 61 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK 102 >gi|326433625|gb|EGD79195.1| D-alanine-D-alanine ligase [Salpingoeca sp. ATCC 50818] Length = 829 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 55/272 (20%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NR 115 V A+ +L +PYT +G A+ DK S GVPV + V Sbjct: 549 VTALFDLKGLPYTGAGSACLAVCYDKGLVNAAAKSMGVPVPAEVQVLAHEDVHASTAATP 608 Query: 116 FTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIP-LDLLQSSSWNHGDQLL 167 + Q +++ P IKP +G S+GI IV +++ + ++ +++++ +L Sbjct: 609 ASSAVQRVVAEVGFPAFIKPARGDGSVGITTGSIVHGEEELVAYINTIRAAANVLCKDVL 668 Query: 168 IEQYVDGIELTCGVMGDASLD----------VTEIAVPKSDF----------YSYELKY- 206 +++Y+ G E++ GV+G+ + D + ++ V + D+ +YE K+ Sbjct: 669 VQEYLQGEEISIGVVGNPAFDAVSGDVDPASIRQLPVLRVDYSALPSDLPPILAYESKWD 728 Query: 207 ---------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 S +T++ P+ + +Y + RL + R R D F Sbjct: 729 PSSPYWTAVSYAPATNLSPSHV-AQLYNQCCRL----FARLELRDYGRFDLRFSERDNVF 783 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LE+N PG M AG + +L+ Sbjct: 784 KLLEVNPNPGWCWDGKLALMYERAGLPYEQLI 815 >gi|71898250|ref|ZP_00680424.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1] gi|71731989|gb|EAO34046.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1] Length = 301 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 24/208 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L E+ T+S + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K+ S L+++ + + L+++++ D +L C Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + + DF S + H+ + +E Q +A + A+G Sbjct: 192 VVGNQVVATMRRQAAEGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ D + R LE+N PG+ Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267 >gi|187926155|ref|YP_001892500.1| cyanophycin synthetase [Ralstonia pickettii 12J] gi|241665643|ref|YP_002984002.1| cyanophycin synthetase [Ralstonia pickettii 12D] gi|187727909|gb|ACD29073.1| cyanophycin synthetase [Ralstonia pickettii 12J] gi|240867670|gb|ACS65330.1| cyanophycin synthetase [Ralstonia pickettii 12D] Length = 886 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++S DK +K ++ SCGVPV +V+ D+ I P V+KP G G+ Sbjct: 212 IAESISRDKDLTKSLLQSCGVPVPEGRMVDSAEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196 ++ +++ ++ + + G+ +++E++V G E + G + A++ T V Sbjct: 272 TNLMTREE---VETAYAVAIEEGNGVIVERFVSGNEHRLLVVGGRLAAAAMGETASVVGD 328 Query: 197 SDFYSYELKYSSLNS 211 + EL S +NS Sbjct: 329 GNSTIEELIESQINS 343 >gi|28199785|ref|NP_780099.1| ribosomal protein S6 modification protein [Xylella fastidiosa Temecula1] gi|182682536|ref|YP_001830696.1| alpha-L-glutamate ligase [Xylella fastidiosa M23] gi|81438275|sp|Q87AB0|RIMK_XYLFT RecName: Full=Ribosomal protein S6 modification protein gi|226694906|sp|B2I9Q1|RIMK_XYLF2 RecName: Full=Ribosomal protein S6 modification protein gi|28057906|gb|AAO29748.1| ribosomal protein S6 modification protein [Xylella fastidiosa Temecula1] gi|182632646|gb|ACB93422.1| alpha-L-glutamate ligase, RimK family [Xylella fastidiosa M23] gi|307578815|gb|ADN62784.1| ribosomal protein S6 modification protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 301 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 24/208 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L E+ T+S + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K+ S L+++ + + L+++++ D +L C Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + + DF S + H+ + +E Q +A + A+G Sbjct: 192 VVGNQVVATMRRQAAEGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ D + R LE+N PG+ Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267 >gi|297160329|gb|ADI10041.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces bingchenggensis BCW-1] Length = 732 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 10/102 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A+A+ + DK+R+K+ V + GVPV P S L + ++ I P ++KP GG Sbjct: 118 GPPAAAIELMGDKIRAKESVRAAGVPVVPGSTGSALTDADLAEAAREIGMPVLLKPSAGG 177 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVDG 174 G+ +++ + + ++ + G D LL+E+++DG Sbjct: 178 GGKGMRLVRDEARLADEIAAARREARGAFGDDTLLVERWIDG 219 >gi|188578200|ref|YP_001915129.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522652|gb|ACD60597.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ + DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 85 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + D + + +A + +A+G Sbjct: 202 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 252 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280 >gi|297181499|gb|ADI17686.1| biotin carboxylase [uncultured gamma proteobacterium HF0130_23I23] Length = 446 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 21/186 (11%) Query: 92 DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+++K++VSS G+P+ P I N I P ++K GG G+ ++ + Sbjct: 117 DKIKAKELVSSLGIPIVPGYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSE 176 Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200 + ++ + + D++ IE+Y+ IE+ V GD + S Sbjct: 177 DELWDSIVSAQNEAKLAFGDDKVFIEKYLSKPRHIEIQ--VFGDGKGKAVHLY---SRDC 231 Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S + KY + PA IP + E+Q + A + I G +FL++ + + F+ Sbjct: 232 SLQRKYQKI--LEEAPALNIPKEKLDEIQNICVRACKEINYEGAGTLEFLYE--NGQFFF 287 Query: 260 LEINVQ 265 +E+N + Sbjct: 288 IEMNTR 293 >gi|256392939|ref|YP_003114503.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora acidiphila DSM 44928] gi|256359165|gb|ACU72662.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora acidiphila DSM 44928] Length = 662 Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 15/141 (10%) Query: 44 LVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +V A L+ D + +H +G E+ + A + + + G A DK R++ ++ Sbjct: 66 VVEAALRTDC--DAVHPGYGFLSENPRLAAAVAQAGLVFVGPGAETIAAMGDKARARTLM 123 Query: 101 SSCGVPVCP--SILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GVPV P S + + +Q I P ++KP+ GG G+ V+ ++P + Q Sbjct: 124 AQAGVPVLPGSSQATDSLAVLAQDAERIGYPVILKPVAGGGGKGMAVVAAADALPGAVEQ 183 Query: 157 S-----SSWNHGDQLLIEQYV 172 + S++ G +LL+E+YV Sbjct: 184 AVRIGRSAFGDG-RLLVERYV 203 >gi|58580833|ref|YP_199849.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425427|gb|AAW74464.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ + DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 133 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 191 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 192 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 249 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S + H+ + D + + +A + +A+G Sbjct: 250 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 300 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 301 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 328 >gi|39934462|ref|NP_946738.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009] gi|39648311|emb|CAE26831.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009] Length = 336 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 28/214 (13%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLIS 125 V ++ E L + + + AL+ DK SK + G+PV +I + ++ + Sbjct: 88 FVASVCEFLGLSHVGAPPNTRALAEDKWLSKLTARAIGLPVADGAIYASLADLEKPPHFA 147 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCG 180 PY +K G +S G+ ++S+ D + ++ G +L+E Y GI++T Sbjct: 148 GPYFVKNRFGAASEGV----SEKSVQDDWDGAAKVAAALIGRGMSVLVEAYAPGIDITVP 203 Query: 181 VMGDASLDVTEIAVPKSD----FYSYELK------YSSLNSTHVLPAKIPLDIYKEVQRL 230 V+G + + + P+SD + +LK Y S +L ++ +D+ Sbjct: 204 VLGGETPMMLGVVRPRSDRIGGIITEDLKRDDPLGYEMAESDPILTDQLAVDV------T 257 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 A A A G R D+ DP + + +LE N+ Sbjct: 258 ALWA--AAGPMDYLRLDYRLDPATGQRTFLEFNI 289 >gi|298571704|gb|ADI87856.1| hypothetical protein AKSOIL_0348 [uncultured bacterium Ak20-3] Length = 302 Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 26/191 (13%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIV-- 143 S DK+RS Q++S G+ + P T D + LI PP V+K L+G +G+++ Sbjct: 97 SRDKLRSLQILSQKGIDL-PVTGCAHSTKDIEGLIKIAGGPPLVVKLLEGTQGIGVVLAE 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200 KK ++ + N +L+++++ G ++ C V+GD + +F Sbjct: 156 TKKAAESVIEAFRDLDAN----ILVQEFIKEASGTDIRCFVVGDKVVASMIRKAKDGEFR 211 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 S + H ++I +E + +A A A+G G++ D L +R L Sbjct: 212 S---------NLHRGGKGTQIEITEEERAVALKAVAAMGL-GVAGVDILRS--NRGPLVL 259 Query: 261 EINVQPGMTPV 271 E+N PG+ + Sbjct: 260 EVNSTPGLKGI 270 >gi|152981863|ref|YP_001355245.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] gi|151281940|gb|ABR90350.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] Length = 722 Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138 + +A +S DK +K ++ SCGVPV +VN D+ I P VIKPL G Sbjct: 208 QTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSVADAWDAAESIGLPVVIKPLDGNHG 267 Query: 139 LGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 G+ + +KD L + S +++E++V G E ++G Sbjct: 268 RGVSTNLNNQKDIEAAFLLAEQES----SDVIVERFVRGNEHRLLIIG 311 >gi|220910205|ref|YP_002485516.1| cyanophycin synthetase [Cyanothece sp. PCC 7425] gi|219866816|gb|ACL47155.1| cyanophycin synthetase [Cyanothece sp. PCC 7425] Length = 918 Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 H+GILA L+ DK +K+V++ G+PV P V R+ + + I+ P VIKPL G Sbjct: 207 NHTGILAVELAGDKEGAKKVMADAGIPV-PKGTVIRYLDELEDAIASIGGYPVVIKPLNG 265 Query: 136 GSSLGIIV 143 GI + Sbjct: 266 NHGRGITI 273 >gi|325919041|ref|ZP_08181102.1| SSU ribosomal protein S6P modification protein [Xanthomonas gardneri ATCC 19865] gi|325550477|gb|EGD21270.1| SSU ribosomal protein S6P modification protein [Xanthomonas gardneri ATCC 19865] Length = 291 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 70 AILELLEI--PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE YT + A S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGSYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGTQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S L T + P + Q +A + +A+G Sbjct: 192 VVGDRVVASMRRQAAEGDFRS----NLHLGGTAAVAEATPQE-----QEVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + +R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--NRGPLVLEVNSTPGLEGV 270 >gi|297180925|gb|ADI17129.1| biotin carboxylase [uncultured gamma proteobacterium HF0070_03O15] Length = 446 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 92 DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKK 146 DK+++K++VSS G+P+ P I N I P ++K GG G+ IV K Sbjct: 117 DKIKAKELVSSLGIPIVPGYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSK 176 Query: 147 DQ---SIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200 D+ SI ++ D++ IE+Y+ IE+ V GD + S Sbjct: 177 DELWDSIVSAQNEAKLAFGDDKVFIEKYLSKPRHIEIQ--VFGDGKGKAVHLY---SRDC 231 Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S + KY + PA IP + E+Q + A + I G +FL++ + + F+ Sbjct: 232 SLQRKYQKI--LEEAPALNIPKEKLDEIQNICVRACKEINYEGAGTLEFLYE--NGQFFF 287 Query: 260 LEINVQ 265 +E+N + Sbjct: 288 IEMNTR 293 >gi|330470535|ref|YP_004408278.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris AB-18-032] gi|328813506|gb|AEB47678.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris AB-18-032] Length = 675 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD---- 147 DK+ +K +++ GVP+ PS ++ + P ++K GG G+ +++ Sbjct: 115 DKLAAKTLLAEAGVPMLPSW------TEADQVTDFPVLVKASAGGGGRGMRIVRDPAGLA 168 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 +++ +++S + IE+YV+ G + ++GD V +A+ + D S + ++ Sbjct: 169 EAVAGARREAASAFGDGTVFIERYVERGRHVEVQIVGDRHGTV--LALGERD-CSIQRRH 225 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + PA + ++ + R A A QA+ G +FLF + F+LE+N + Sbjct: 226 QKI--VEEAPALLDAEVRARLHRAAVAAGQAVDYVGAGTVEFLFTEEG-EFFFLEMNTR 281 >gi|147832389|emb|CAN77783.1| hypothetical protein VITISV_037213 [Vitis vinifera] Length = 235 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 24/106 (22%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSI 111 F +HG GEDG +Q +LE +PYT G+ S + MDK+ + ++ GV + Sbjct: 96 FIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV-----L 150 Query: 112 LVNRFTMDSQHLISPP----------------YVIKPLKGGSSLGI 141 +N+ + + L++ P +KP + G S G+ Sbjct: 151 TINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGV 196 >gi|294494965|ref|YP_003541458.1| hypothetical protein Mmah_0281 [Methanohalophilus mahii DSM 5219] gi|292665964|gb|ADE35813.1| protein of unknown function DUF201 [Methanohalophilus mahii DSM 5219] Length = 360 Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 20/101 (19%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A SMDK RSK+ S +P+ S+ +PPY +KP SS G +I Sbjct: 97 AYDTSMDKKRSKEYFKSIDIPI-----------PSEKPQNPPYFVKPPCMSSSKGARIID 145 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 D S N D ++IE+YV G ++ V+GD + Sbjct: 146 ND---------SELANIDDSMVIEEYVPGPVVSLEVVGDGN 177 >gi|85708773|ref|ZP_01039839.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1] gi|85690307|gb|EAQ30310.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1] Length = 338 Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 116/308 (37%), Gaps = 26/308 (8%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFG 63 GG+ E ++LE G + D S ++ D F +L+ G Sbjct: 31 GGMHPEDGNHAIYHHEVRTSLEQLGLNLHLAD---SYDVLFTRPDVDFVFPLLNRGGFVN 87 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + L+ + + +PY + L DK SK V + GVP P R + Sbjct: 88 SEMLIPVLCNMHRLPYLGAMPFLRGLGDDKSVSKLVATHAGVPTAPWFCFRRGAPVQESD 147 Query: 124 ISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +VIKP +S GI + + G ++E Y+DG ++ C Sbjct: 148 LPPSPDGRWVIKPNASSASWGISDAYDWNGVTNSIADIHG--QGHDAIVEPYLDGYDVQC 205 Query: 180 GVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + ++ +A+P ++Y K + +T K D + R+ Sbjct: 206 AFI---TMHGKPVALPMLWYERENTQKLWTYYEKRDLVPNTEKAALKR-FDHAEFAPRIE 261 Query: 232 FLAHQ---AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +AH+ R +F D + + ++EIN+ + + + A AG+S +L Sbjct: 262 EMAHKFAREFLPFDYGRIEFRVDLKTGDINFIEINLNCNLWSEKVMAKAAKEAGFSHGDL 321 Query: 289 LLWMVEDA 296 L ++ +A Sbjct: 322 LETLLAEA 329 >gi|329905041|ref|ZP_08273976.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547777|gb|EGF32550.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 724 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++S DK +K ++S+CGVPV +VN ++ I P +KP G G+ Sbjct: 213 VAESISRDKDLTKVLLSACGVPVPEGRMVNSAAEAWEAAEEIGLPVAVKPYDGNHGRGVS 272 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + Q++ + +G +++EQ++ G E V+GD Sbjct: 273 LDLDSQAVVEAAYHLAHQANGGTVIVEQFIPGNEHRLLVVGD 314 >gi|254384719|ref|ZP_05000057.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp. Mg1] gi|194343602|gb|EDX24568.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp. Mg1] Length = 676 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A A+S+ DK+R+K+ V + GVPV P S L + + + I P ++KP GG Sbjct: 104 GPPAKAISLMGDKIRAKETVKAAGVPVVPGSSGSGLSDAELVAAAEEIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173 G+ +++ + I ++ S D LL+E++VD Sbjct: 164 GGKGMRLVRDAGLLAEEIAAARREARSSFGDDTLLVERWVD 204 >gi|251796812|ref|YP_003011543.1| urea carboxylase [Paenibacillus sp. JDR-2] gi|247544438|gb|ACT01457.1| urea carboxylase [Paenibacillus sp. JDR-2] Length = 1215 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 12/181 (6%) Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQS 149 K ++++ VP+ P L+ + H I P ++K GG +G+ V + +++ Sbjct: 116 KHSARELAEKANVPLLPGTPLLTQLDEAVAHAAEIGYPVILKSTAGGGGIGMRVCEDEEA 175 Query: 150 I-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + L +++ +G L + + + G+ + +V + Sbjct: 176 LRAAFDSVRHLAEANFKNGGMFLEKYIAKARHVEVQIFGNGNGEVVALGERDCSVQRRNQ 235 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K + P ++ +I +RLA A G R +FL+DP S K ++LE+N Sbjct: 236 KVVEESPAPQFPEEVRTEILACAKRLAAEA----GYRSAGTVEFLYDPSSFKFYFLEVNT 291 Query: 265 Q 265 + Sbjct: 292 R 292 >gi|50082941|gb|AAT70092.1| D-alanyl-D-alanine ligase [Rhodococcus globerulus] Length = 126 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 165 QLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK---YSSLNSTHVLPA 217 ++LI + V G E+ C ++G+ S +V +A+ F ++ K S NST ++PA Sbjct: 24 KVLIGEAVVGSEVGCSILGNELDLISGEVDRVALSHGFFKIHQEKDPESGSENSTFIVPA 83 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I + VQ A ++A+GC G++R D Sbjct: 84 DISEESRSLVQETAKTIYRALGCSGLARVDMFL 116 >gi|71275169|ref|ZP_00651456.1| S6 modification enzyme RimK [Xylella fastidiosa Dixon] gi|71899806|ref|ZP_00681956.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1] gi|170731161|ref|YP_001776594.1| ribosomal protein S6 modification protein [Xylella fastidiosa M12] gi|226694907|sp|B0U5E6|RIMK_XYLFM RecName: Full=Ribosomal protein S6 modification protein gi|71163978|gb|EAO13693.1| S6 modification enzyme RimK [Xylella fastidiosa Dixon] gi|71730397|gb|EAO32478.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1] gi|167965954|gb|ACA12964.1| ribosomal protein S6 modification protein [Xylella fastidiosa M12] Length = 301 Score = 42.0 bits (97), Expect = 0.100, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 24/208 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L E+ T+S + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K+ S L+++ + + L+++++ D +L C Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + DF S + H+ + +E Q +A + A+G Sbjct: 192 VVGNQVVATMRRQAADGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ D + R LE+N PG+ Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267 >gi|284517204|gb|ADB92102.1| D-alanyl-D-alanine ligase [Paenibacillus popilliae] Length = 65 Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++A+GC+G+SR D R + E+N PG T S +P M A AG + L+ Sbjct: 2 YKALGCKGLSRVDMFLQENGR-IILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLI 55 >gi|71405261|ref|XP_805264.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL Brener] gi|70868604|gb|EAN83413.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi] Length = 679 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 19/185 (10%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K SK+++ + GVPV P + + I P +IK + GG G+ ++K Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185 Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203 L L +S ++ D++++E+YV + C + D + F+ + Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGNGV-------FFFERD 238 Query: 204 LKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + V A P D+ + ++ A +A+G G +F+FD F++ Sbjct: 239 CSVQRRHQKVVEEAPAPHITPDMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFM 298 Query: 261 EINVQ 265 E+N + Sbjct: 299 EMNTR 303 >gi|190360216|sp|B0RPP2|RIMK_XANCB RecName: Full=Ribosomal protein S6 modification protein Length = 291 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L E T++ + A+ S DK+R+ Q+++S G+ + P + D+Q L+S Sbjct: 75 AVLRQFEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + DF S L T + P + Q +A + +A+G Sbjct: 192 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 243 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 270 >gi|326317337|ref|YP_004235009.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374173|gb|ADX46442.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 856 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 27/182 (14%) Query: 65 DGLVQ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 DG ++ + E L +P S +A L DK+ +V+ + GVP P+ R D Sbjct: 78 DGFIEMAARLSERLGLPCNPSAAIA--LCRDKLLLGEVLQARGVPY-PATREVRSAADMD 134 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P ++KP +G S+G+ ++ + + +P Q W + +++V+G E + Sbjct: 135 G-IGFPAIVKPRQGTGSIGVRLVTEARGMP--DAQEGPW------IAQRFVEGTEFSVET 185 Query: 182 MGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 D + L VT + + + L HVLPA I D + + A A Sbjct: 186 FSDGAGHHVLAVTRKYLTQPPHF--------LELAHVLPADISPDAARRIVETVTRALDA 237 Query: 238 IG 239 +G Sbjct: 238 VG 239 >gi|118474608|ref|YP_892697.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40] gi|118413834|gb|ABK82254.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter fetus subsp. fetus 82-40] Length = 445 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKP 132 I + + A AL DK ++KQV+ G+PV P + +D+ I P ++K Sbjct: 102 IKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVPGSDGSIQDIDAAKKLAREIGYPIIVKA 161 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN--------HGD-QLLIEQYVDG-IELTCGVM 182 GG G+ V+++++ L+ S W+ GD + +E+Y+ + V+ Sbjct: 162 AAGGGGRGMRVVEREED-----LEKSFWSAESEAMSAFGDGTMYMEKYISNPRHIEVQVL 216 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD +V I K + +L K ++++ A A +AIG G Sbjct: 217 GDEHGNVVHIGERDCSMQRRHQKLIEESPAVILDDKTRANLHE----TAVKATKAIGYAG 272 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265 +FL+D K +++E+N + Sbjct: 273 AGTFEFLYDQKDNKFYFIEMNTR 295 >gi|121602177|ref|YP_989057.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella bacilliformis KC583] gi|120614354|gb|ABM44955.1| acetyl-CoA carboxylase, biotin carboxylase [Bartonella bacilliformis KC583] Length = 446 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 21/219 (9%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ ILE I + DK+ +K+ G+P+ P ++ + Sbjct: 82 YGFLSENAKFADILEAHNITFIGPTAAHIRTMGDKIEAKKTAKQLGIPIVPGSDGAVTED 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQ 170 H I P +IK GG G+ V++ ++ + + L + S + D + IE+ Sbjct: 142 ADAFRIAHEIGYPVIIKASAGGGGRGMKVVRSEKELSVALHTARSEAGAAFNDDSVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKE 226 Y++ IE+ VMGD + + + K + NS + +K K+ Sbjct: 202 YLEKPRHIEIQ--VMGDGAGNAIHLGERDCSLQRRHQKVWEEANSPALDESK-----RKK 254 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + A +G RG +FL++ + + +++E+N + Sbjct: 255 IGDIVANACAKLGYRGAGTIEFLYE--NSEFYFIEMNTR 291 >gi|260220383|emb|CBA27867.1| hypothetical protein Csp_A04420 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 811 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 19/197 (9%) Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 + + GN + G A + + +A ++ DK +K ++ SCGVPV LV Sbjct: 203 SIRLTEGNLVQLGYGIAQRRIWTAETDQTSAIAEEIASDKDLTKSLLKSCGVPVPEGTLV 262 Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 N ++ I P +KP G G+ + D++ + G +++E++ Sbjct: 263 NSPEKAWEAAQDIGLPVAVKPYDGNHGRGVTLDLSDKASIETAFHVAKEQSGGSVIVEKF 322 Query: 172 VDGIE---LTCG-------------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + G E L G V+GD + VTE+ + + + L + + Sbjct: 323 IPGNEHRLLVVGKRVVAAARGESAWVIGDGTSTVTELVNAQINTDPRRGEAEELPLSPIE 382 Query: 216 PAKIPLDIYKEVQRLAF 232 P K P ++ E++R Sbjct: 383 PEKSP-EVQLELRRAGL 398 >gi|157870774|ref|XP_001683937.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127004|emb|CAJ05423.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 1118 Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP-YTHSGILAS 87 A + +ID R+V ++ K D+ FN+ G E ++E LE +G + Sbjct: 598 ADVSMKKIDSYRTVRKLVTSSKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 657 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K+ K +V S GV V +L++ +HL P ++K L G +S+GI Sbjct: 658 GFEPSKIDMKLMVGSSGVKVPNFVLLSNAESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 714 Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195 K + LD L++ +NH L+E+++ G E T D S ++ P Sbjct: 715 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 771 Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245 DF +E K++ + L + P Y + +A A + I G R Sbjct: 772 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITEMARNAFKYIMNGVGYGR 829 Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268 DF D L+ + ++LEIN GM Sbjct: 830 VDFRIDELTGEPYFLEINPNCGM 852 >gi|21243979|ref|NP_643561.1| ribosomal protein S6 modification protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109593|gb|AAM38097.1| ribosomal protein S6 modification protein [Xanthomonas axonopodis pv. citri str. 306] Length = 248 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 74/141 (52%), Gaps = 12/141 (8%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ S DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 75 AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191 Query: 181 VMGDASLDVTEIAVPKSDFYS 201 V+GD + + DF S Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS 212 >gi|188990475|ref|YP_001902485.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris str. B100] gi|167732235|emb|CAP50427.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. campestris] Length = 301 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L E T++ + A+ S DK+R+ Q+++S G+ + P + D+Q L+S Sbjct: 85 AVLRQFEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + DF S L T + P + Q +A + +A+G Sbjct: 202 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 252 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 253 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 280 >gi|71404424|ref|XP_804919.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL Brener] gi|70868121|gb|EAN83068.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi] Length = 679 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K SK+++ + GVPV P + + I P +IK + GG G+ ++K Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185 Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203 L L +S ++ D++++E+YV + C + D + + + D S + Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGN--GVFFFERD-CSVQ 242 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 ++ + P P D+ + ++ A +A+G G +F+FD F++E+N Sbjct: 243 RRHQKVIEEAPAPHITP-DMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMN 301 Query: 264 VQ 265 + Sbjct: 302 TR 303 >gi|262199308|ref|YP_003270517.1| hypothetical protein Hoch_6149 [Haliangium ochraceum DSM 14365] gi|262082655|gb|ACY18624.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365] Length = 441 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 32/214 (14%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLIS 125 L Q + + LE+P G AS + DK + +S+ P+ V ++S ++ Sbjct: 102 LSQVVADYLELP--SPGWRASTVCRDKSLQRHYLSTW----SPAFHVRSPGDIESFDALA 155 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ--LLIEQYVDGIELTCGVMG 183 PYV+KP + S G++V++ D L+ + ++ D LL E+Y+DG E + + Sbjct: 156 FPYVVKPARRSGSSGVVVVRDH-----DGLRRALPDYADDEILLQEKYIDGAEFSVESLV 210 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------IPLDIYKEV-QRLAFLA 234 + K +S+E + H +PA+ L+I K++ RL F Sbjct: 211 QGGAILFSCVAEKRTNHSHEGGDYFVEMAHTVPAQNLSDDMRARLLEINKDILTRLDFRD 270 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ-PG 267 GI+ ++F FD F +EI + PG Sbjct: 271 -------GIAHAEFKFD-REANPFLMEIAARNPG 296 >gi|309389677|gb|ADO77557.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Halanaerobium praevalens DSM 2228] Length = 414 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 12/151 (7%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVI 144 A A++ K+ + +SS G+P ++ + DS+ ++ PYV+KPL G+ + Sbjct: 97 AKAVTNKKIMKNKFLSS-GIPTVNFKIIKKNFFDSELKDLNSPYVVKPLDSQGQRGVFKL 155 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS---LDVTEIAVPKSDFY 200 I + S++ +++L+E+Y E+T G + + L VT+ +SD Sbjct: 156 NSIAQIREKFEEVLSFSREEEILVEEYYLSDEITVSGWVKNGETHLLTVTDRLNFESDI- 214 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + + S+H+ P+K D ++E++ L+ Sbjct: 215 -----HLGICSSHLFPSKYLQDYFREIKALS 240 >gi|329937927|ref|ZP_08287409.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces griseoaurantiacus M045] gi|329302884|gb|EGG46773.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces griseoaurantiacus M045] Length = 649 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + + I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEELAAAAREIGAPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ ++ ++ + D LL+E+++D Sbjct: 169 RLVRDTATLAEEIAAARREARASFGDDTLLVERWID 204 >gi|298713878|emb|CBJ33757.1| Acetyl-CoA carboxylase, partial [Ectocarpus siliculosus] Length = 798 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 P +P ++KE++R A Q IG RG ++L++P S F+LE+N Sbjct: 230 PTIVPPAMFKEMERAAQRLTQNIGYRGAGTVEYLYNPESNSFFFLELN 277 >gi|207110562|ref|ZP_03244724.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_CA4C1] Length = 97 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SP 126 ++LE I + I AS LS +K +K G+ +LVN + ++ LI + Sbjct: 3 SLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNF 62 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI 150 P+++KP GSSLG+ V+K+++ + Sbjct: 63 PFIVKPSNAGSSLGVNVVKEEKEL 86 >gi|194366956|ref|YP_002029566.1| alpha-L-glutamate ligase [Stenotrophomonas maltophilia R551-3] gi|226694902|sp|B4STS0|RIMK_STRM5 RecName: Full=Ribosomal protein S6 modification protein gi|194349760|gb|ACF52883.1| alpha-L-glutamate ligase, RimK family [Stenotrophomonas maltophilia R551-3] Length = 292 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 22/186 (11%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145 S DK+R+ Q++++ G+ + P + D+ L+S PP+V+K +G G+I+ + Sbjct: 97 SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 155 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 K S ++++ + + L+++++ G +L C V+GD + + P+ DF S Sbjct: 156 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 212 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + H + + Q++A + +A+G + D + +R LEI Sbjct: 213 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEI 261 Query: 263 NVQPGM 268 N PG+ Sbjct: 262 NSTPGL 267 >gi|295110623|emb|CBL24576.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Ruminococcus obeum A2-162] Length = 427 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 15/139 (10%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-M 182 +S P + KP+ S GI +I + + + +S+ + D++L+E+Y DG E + Sbjct: 143 LSYPLISKPMDKYGSRGIYIIHDENELTEQIARSAEFTDLDEVLVEEYNDGFEFNMMTWV 202 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL--AFLAHQAIGC 240 D ++V I++ + E +++ +V P++ +Y+ + L +++AH Sbjct: 203 NDGKVNV--ISIADREKTQPEANMLPISTRNVYPSRFLSHVYEPAKDLLQSYIAHTGQ-- 258 Query: 241 RGISRSDFLFDPLSRKVFW 259 + PLS + FW Sbjct: 259 --------MDGPLSMQFFW 269 >gi|207722336|ref|YP_002252772.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2] gi|206587513|emb|CAQ18095.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2] Length = 390 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 126/338 (37%), Gaps = 78/338 (23%) Query: 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 SG L DAGF L+ H PD A L F EDG+ QAI Sbjct: 57 SGADIGHCLRDAGFD-----------LLTPHAAPDPA-RALDWVFPDTEDGIAQAIGRGA 104 Query: 76 EIPYTHSGIL-----------------ASALSMD---KMRSKQVVSSCGVPVCPSILVNR 115 + + ++ + A AL D K + + G+PV S L+ R Sbjct: 105 TMLWANTVLFRGHPIECRAGAAWIVGQAPALQQDADDKFATNARLRRHGLPVAASSLIGR 164 Query: 116 -----------FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIK---KDQSIPLDLLQSSS 159 D H ++ P VIKP++G S G+ ++ Q LL S + Sbjct: 165 EASGSLPPLEALREDDLHRAGLAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDSGA 224 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSDFY------SYELKY 206 + GD L+ E ++ G ELT V+ S D P F Y Sbjct: 225 F--GDALIAETFLAGEELTVTVLPRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAV 282 Query: 207 SSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINV 264 + ++ LP + + + + R LA+ +G R R D D + + L ++N+ Sbjct: 283 AVTRNSVALPVEAAMAPEARALIRACLLAYDVVGARAPIRIDCRAD--AHGAYQLFDLNM 340 Query: 265 QPGMTPV---------SIFPEMAAYAGYSFRELLLWMV 293 +P MT S+ A G+ +RELL+ M+ Sbjct: 341 KPNMTGAGRPGREDQDSLSALAARAVGWDYRELLVRMM 378 >gi|314922658|gb|EFS86489.1| conserved domain protein [Propionibacterium acnes HL001PA1] Length = 123 Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 18 PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 R V LE PGMT S+ P AG E+ +V+D + Sbjct: 78 RPVL-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 119 >gi|229002475|ref|ZP_04160564.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17] gi|228758608|gb|EEM07742.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17] Length = 393 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 26/166 (15%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYV 172 S ++I P ++KP+ S G+ K + L+ SW + +L+E+++ Sbjct: 124 SLNIIGLPCIVKPVDDSGSNGVRFCKTVAEVKEQTLEILSWKKNSRGQSTVQTVLLEEFI 183 Query: 173 DGIELTCGVMG----DASLDVTE---IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 D E + + + +TE I P F ++ HV PAK+P D+ + Sbjct: 184 DAPEYSVEIFSFEGKGKCVGITEKKLIGFP--HFVEHQ---------HVFPAKLPADVTR 232 Query: 226 EVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 E+Q A +A+G G + ++ P + + + GM P Sbjct: 233 EIQNTVEDALKAVGITNGPTHTEVKLTPQGCAIIEINARLAGGMIP 278 >gi|296272375|ref|YP_003655006.1| alpha-L-glutamate ligase [Arcobacter nitrofigilis DSM 7299] gi|296096549|gb|ADG92499.1| alpha-L-glutamate ligase, RimK family [Arcobacter nitrofigilis DSM 7299] Length = 310 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 99/209 (47%), Gaps = 27/209 (12%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PP 127 E++++ ++ SG LA S DK+RS QV+S V + ++ + + ++ +I+ P Sbjct: 80 FEMMDV-FSTSGNLAITRSRDKLRSLQVLSKNDVDMPKTVFASNKS-SAKDVIALSGGAP 137 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVM 182 V+K L+G +G++++ +++ LD N LL+++Y++ G ++ V+ Sbjct: 138 LVLKILEGTQGVGVVLLDSEKAAKSVLDAFYGMDVN----LLVQEYIEEAGGADIRAFVV 193 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + + DF S + H + I + ++ + A A +A+G G Sbjct: 194 NGEVVGAMKRQGAEGDFRS---------NLHQGGSAIAHKLTRKEKSTAIAAAKAMGL-G 243 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + D + P +R +E+N PG+ + Sbjct: 244 VCGVDMI--PSARGPLVMEVNSSPGLEGI 270 >gi|256371819|ref|YP_003109643.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium ferrooxidans DSM 10331] gi|256008403|gb|ACU53970.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium ferrooxidans DSM 10331] Length = 646 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 22/222 (9%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L P F H F E ++ A L + P A AL DK R+K ++ GVP Sbjct: 78 LHPGYGFLSEHPGFAE-AVIAAGLTWIGPPPE-----AIALMGDKERAKAHMARAGVPTL 131 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----D 164 P+ F D ++ P ++KP GG G+ V+++ ++ + + G D Sbjct: 132 PT-----FAPDDPDVVLP-VLVKPTAGGGGKGMDVVRERAALGAAIDAARRTAAGAFGDD 185 Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++ +E++V+ G + V+ D V + K + VL A D+ Sbjct: 186 RVFLERFVEVGRHVEIQVVADGHGAVVHCFERECSIQRRHQKVLEEAPSPVLDA----DL 241 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + A A +A+G RG+ +FL +P ++LE+N + Sbjct: 242 RERMGAAACAAARAVGYRGVGTVEFLLEP-DGSYWFLEMNTR 282 >gi|116328676|ref|YP_798396.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330667|ref|YP_800385.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121420|gb|ABJ79463.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124356|gb|ABJ75627.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 760 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 13/213 (6%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+ L++P +A + KMR + + +P + ++ + P Sbjct: 91 VAAVANALDLPGIRYVDAEAASNKVKMRERLKRAGISLPGFAPVWSFSDAREALEFLKFP 150 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186 V+KP + G+I ++ + + + ++ ++++E+Y+ G E++ + + + Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210 Query: 187 LDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-G 242 +T IA + + F+ + H +P+ + + KEV+ + F + +A+G G Sbjct: 211 FVITGIADRIIEREPFF--------IEMGHNMPSALSSSVLKEVEDVMFRSMKALGITIG 262 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 + D P KV + + G FP Sbjct: 263 AGKGDIKVTPDGVKVGEVAARLSGGFMSAFTFP 295 >gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera] Length = 222 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%) Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + ++L+ E + +E+T GV+G SL + D S E K+ ++ P Sbjct: 73 DXANRLIWEGHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTP 132 Query: 217 AKIPLDIYKEV------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 PL I + QR+ +A+ + G SR D + S +V +E+N PGMTP Sbjct: 133 P--PLSIISKAALESCKQRIELIAN-TLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTP 189 Query: 271 VSIF------PEMAAYAGYSFRELL 289 ++ E Y FR LL Sbjct: 190 STVLIHQALAEEPPMYPHRFFRTLL 214 >gi|225437102|ref|XP_002273573.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296085234|emb|CBI28729.3| unnamed protein product [Vitis vinifera] Length = 735 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P N F I P +IKP GG G+ +++ Sbjct: 147 DKSASKRIMGAAGVPLVPGYHGNEQDIDFMKSEGEKIGYPVLIKPTHGGGGKGMRIVQSP 206 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 L + ++ + G + +L+E+Y+ + + GD +V + S Sbjct: 207 SEFVEAFLGAQREAAASFGINTILLEKYITKPRHIEVQIFGDKFGNVLHL---NERDCSV 263 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + ++ + P I D + + A A +A+G +F+ D +S + +++E+ Sbjct: 264 QRRHQKIIEEAPAP-NIVNDFRTHLGQAAVSAAKAVGYHNAGTVEFIVDTISGQFYFMEM 322 Query: 263 NVQ 265 N + Sbjct: 323 NTR 325 >gi|125975129|ref|YP_001039039.1| hypothetical protein Cthe_2647 [Clostridium thermocellum ATCC 27405] gi|256003215|ref|ZP_05428207.1| protein of unknown function DUF201 [Clostridium thermocellum DSM 2360] gi|281418450|ref|ZP_06249469.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Clostridium thermocellum JW20] gi|125715354|gb|ABN53846.1| protein of unknown function DUF201 [Clostridium thermocellum ATCC 27405] gi|255992906|gb|EEU02996.1| protein of unknown function DUF201 [Clostridium thermocellum DSM 2360] gi|281407534|gb|EFB37793.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Clostridium thermocellum JW20] gi|316939296|gb|ADU73330.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Clostridium thermocellum DSM 1313] Length = 308 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +LIE+Y+ G + T V D +V + V +Y +Y K+ D Sbjct: 177 VLIEEYIKGNDCTVAVESDGK-NVRSLGVT---YYCKAKEYKLKGFEGAYSKKMSEDKES 232 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 E+ ++A + +G G+ R DF+ D S KV+ LE+N Sbjct: 233 EICKIAVQIVEQLGFTGLLRIDFIVDECSEKVYVLELNT 271 >gi|21227545|ref|NP_633467.1| hypothetical protein MM_1443 [Methanosarcina mazei Go1] gi|20905925|gb|AAM31139.1| hypothetical protein MM_1443 [Methanosarcina mazei Go1] Length = 371 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 34/190 (17%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A +S DK +SK+ +S G P PPY +KP SS+G +I Sbjct: 105 AYRISRDKRKSKEYFASIGTPT-----------PQDKPSEPPYFVKPPCESSSVGARIIH 153 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + L L+ +LIE+YV+G ++ V+GD + AV K + Sbjct: 154 DRKE--LKELEPG-------MLIEEYVEGEVVSLEVIGDGN----NFAVVKETLVHIDDT 200 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y H++ PL + + L++ + +GI + + PL KV +EI+ + Sbjct: 201 Y----DCHMV---TPLPLDPSFRELSYSLAANLPLKGIMDVEAISGPLGLKV--IEIDAR 251 Query: 266 -PGMTPVSIF 274 P TP +++ Sbjct: 252 FPSQTPTAVY 261 >gi|313835192|gb|EFS72906.1| hypothetical protein HMPREF9621_02809 [Propionibacterium acnes HL037PA2] gi|314929164|gb|EFS92995.1| hypothetical protein HMPREF9607_00846 [Propionibacterium acnes HL044PA1] gi|314970886|gb|EFT14984.1| hypothetical protein HMPREF9622_01951 [Propionibacterium acnes HL037PA3] Length = 69 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42 + VL GG+S +R++SL SG+ A AL G +V + D+D S+ Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSSL 46 >gi|302551602|ref|ZP_07303944.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces viridochromogenes DSM 40736] gi|302469220|gb|EFL32313.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces viridochromogenes DSM 40736] Length = 644 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A AL DK+R+K+ V GVPV P ++ L P ++KP GG G+ +++ Sbjct: 115 AIALMGDKIRAKETVREAGVPVVPGGRDPDLAEAAREL-GAPVLLKPSAGGGGKGMRLVR 173 Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ I ++ + D LL+E+++D Sbjct: 174 DLTRLEEEIASARREARASFGDDTLLVERWID 205 >gi|295096451|emb|CBK85541.1| SSU ribosomal protein S6P modification protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 266 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 28/209 (13%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140 +A + + DK+RS Q+++ G+ + P + D+ LI P VIK ++G +G Sbjct: 58 VAISRARDKLRSLQLLARQGIDL-PVTGIAHSPDDTSDLIDMVGGAPLVIKLVEGTQGIG 116 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197 +++ + Q+ + N +L+++Y+ +G ++ C V+GD + E + Sbjct: 117 VVLAETRQAAESVIDAFRGLNA--HILVQEYIKEANGCDIRCFVVGDEVVAAIERQAKEG 174 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DF S+L+ + A++ L I + + +A A Q +G ++ D L R Sbjct: 175 DF------RSNLHRGGI--ARVAL-ISEREREIAVKAAQTLGL-DVAGVDLL--RAGRGP 222 Query: 258 FWLEINVQPGM------TPVSIFPEMAAY 280 +E+N PG+ T V I +M A+ Sbjct: 223 LVMEVNASPGLEGVEKTTGVDIAGKMIAW 251 >gi|254495815|ref|ZP_05108727.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella drancourtii LLAP12] gi|254354972|gb|EET13595.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella drancourtii LLAP12] Length = 285 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 24/208 (11%) Query: 70 AILELLEIP--YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--- 124 A+L LE YT + +A + S DK RS QV++ G+P+ P + D++ LI Sbjct: 59 AVLRHLETMGMYTVNESIAISRSRDKFRSLQVLARKGLPM-PLTSFAQSPDDTEDLIHMV 117 Query: 125 -SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCG 180 P VIK L+G G+I+ QS + ++ + H + +L++++++ G ++ C Sbjct: 118 GGAPLVIKLLEGTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCF 175 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + + + +F + + H + + + + + +A A + +G Sbjct: 176 VVGEKVVGAVKRQAKEGEFRA---------NVHQGGKAVKVKLTPQERAIAVSAAKTMGL 226 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268 + ++ D + + LEIN PG+ Sbjct: 227 K-VAGVDLIRS--NHGPLILEINSSPGL 251 >gi|290957731|ref|YP_003488913.1| ATP-binding biosynthetic protein [Streptomyces scabiei 87.22] gi|260647257|emb|CBG70362.1| putative ATP-binding biosynthetic enzyme [Streptomyces scabiei 87.22] Length = 393 Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%) Query: 92 DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +K ++ + + GVP S+ R + + P VIKP S+G+I I + + Sbjct: 85 NKATARTLFARHGVPSAASMTARTLREAERATRTLGFPAVIKPAAAAGSIGVIRIDRPEE 144 Query: 150 IPLDLLQSSSWNHGDQ----LLIEQYVDGIELT 178 +P +S+ H + +L+E+Y+DG E++ Sbjct: 145 LPAAFEFASAGAHRSREDSGVLVEEYLDGPEVS 177 >gi|326517844|dbj|BAK03840.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 550 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 33/193 (17%) Query: 92 DKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 DK SK+++ + GVP+ P I + + D I P +IKP GG G+ ++ Sbjct: 156 DKSASKRIMGAAGVPLVPGYHGADQDIELLKLEADK---IGYPVLIKPTHGGGGKGMRIV 212 Query: 145 KKDQSIPLDLLQSSSWNHG-----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198 + +D ++S+ D LLIE+Y+ + V GD + + Sbjct: 213 QGPDDF-VDSVRSAQREAAASFGIDTLLIEKYITQPRHIEVQVFGDKHGNAIHL------ 265 Query: 199 FYSYELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 YE + SL H PA + + + A A +A+G +F+ D Sbjct: 266 ---YE-RDCSLQRRHQKIIEEAPAPNVTTEFRTHIGEAAVSAAKAVGYYSAGTVEFIVDT 321 Query: 253 LSRKVFWLEINVQ 265 LS + +++E+N + Sbjct: 322 LSGEFYFMEMNTR 334 >gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803] gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin synthase gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803] Length = 873 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 +HSGIL L+ DK +K ++ G+PV + F D + I+ P VIKPL G Sbjct: 207 SHSGILGVELACDKEGTKTILQDAGIPVPRGTTIQYFD-DLEEAINDVGGYPVVIKPLDG 265 Query: 136 GSSLGIIVIKK--DQSI-PLDLLQSSSWNHGDQLLIEQYVDG 174 GI + + +++I DL S + +++E+Y +G Sbjct: 266 NHGRGITINVRHWEEAIAAYDLAAEESKSR--SIIVERYYEG 305 >gi|190575621|ref|YP_001973466.1| putative ribosomal protein S6 modification protein [Stenotrophomonas maltophilia K279a] gi|226694903|sp|B2FSC4|RIMK_STRMK RecName: Full=Ribosomal protein S6 modification protein gi|190013543|emb|CAQ47178.1| putative ribosomal protein S6 modification protein [Stenotrophomonas maltophilia K279a] Length = 292 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 22/186 (11%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145 S DK+R+ Q++++ G+ + P + D+ L+S PP+V+K +G G+I+ + Sbjct: 97 SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 155 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 K S ++++ + + L+++++ G +L C V+GD + + P+ DF S Sbjct: 156 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 212 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + H + + Q++A + +A+G + D + +R LE+ Sbjct: 213 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEV 261 Query: 263 NVQPGM 268 N PG+ Sbjct: 262 NSTPGL 267 >gi|166713157|ref|ZP_02244364.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 305 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 24/211 (11%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ + DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 85 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGTGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + + DF S L T + L+ + +A + +A+G Sbjct: 202 VVGDTVVAAMRRQAAEGDFRS----NLHLGGTAAVAEATELE-----REVAVRSARALGL 252 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++ D + R LE+N PG+ V Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280 >gi|39944808|ref|XP_361941.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15] gi|145021572|gb|EDK05701.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15] Length = 1854 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 20/185 (10%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKK 146 K R++++ + GVP P + DS ++ P +IK GG +G+ V Sbjct: 765 KHRAREIAQAAGVPTVPGTAL---LEDSAQAVAEAGRIGFPVMIKSTAGGGGIGLRVSHD 821 Query: 147 DQSIPLD---LLQSSSWNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201 +S+ D + + ++ N GD + +E++V + V+GD + V + V + D Sbjct: 822 AESLKEDYESVQRLAASNFGDAGVFLERFVQRARHIEVQVLGDGNGAV--VTVGERD--- 876 Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 L+ + PA +P ++ + +++ A A+ R + +F++D F+L Sbjct: 877 CSLQRRNQKVVEECPAFFVPHEVRQRMRKAAVDLAAAVSYRNVGTVEFIYDVDKEDFFFL 936 Query: 261 EINVQ 265 E+N + Sbjct: 937 EMNTR 941 >gi|302339420|ref|YP_003804626.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Spirochaeta smaragdinae DSM 11293] gi|301636605|gb|ADK82032.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Spirochaeta smaragdinae DSM 11293] Length = 555 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 9/185 (4%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V + E L +P + A+ + DK ++ +S V V + + + +S P Sbjct: 94 VARVAEKLTLPGIS--VKAAMAASDKALMRRTLSDANVRVPRFVQLADGEKEIPKELSYP 151 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS 186 V+KP+ + G+ + D+ + L + ++ +++E+++DG E + ++ Sbjct: 152 LVVKPVDNMGARGVRRVDNDEELSSALDDAFRFSRSGSVIVEEFLDGPEFSIDALVEKGQ 211 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISR 245 + IA F Y ++ H +P+ P D+ +EV+ A +AIG G ++ Sbjct: 212 VRFCGIADRHITFAPYFVEMG-----HTIPSSAPADMIEEVKGEFLKAVEAIGIDNGAAK 266 Query: 246 SDFLF 250 D F Sbjct: 267 GDVKF 271 >gi|242084122|ref|XP_002442486.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor] gi|241943179|gb|EES16324.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor] Length = 752 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 31/192 (16%) Query: 92 DKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IV 143 DK SK+++ + GVP+ P I + + D I P +IKP GG G+ IV Sbjct: 168 DKSASKRIMGAAGVPLVPGYHGADQDIELLKLEADK---IGYPVLIKPTHGGGGKGMRIV 224 Query: 144 IKKDQSIP--LDLLQSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDF 199 + D+ + L + ++ + G + LLIE+Y+ + V GD + Sbjct: 225 ERPDEFVDAVLSAQREAAASFGVNTLLIEKYITQPRHVEVQVFGDQHGNA---------I 275 Query: 200 YSYELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 Y YE + SL H PA + + + A A +A+G +F+ D L Sbjct: 276 YLYE-RDCSLQRRHQKIIEEAPAPNVTAEFRSHIGGAAVSAAKAVGYYNAGTVEFIVDTL 334 Query: 254 SRKVFWLEINVQ 265 S + +++E+N + Sbjct: 335 SGEFYFMEMNTR 346 >gi|167854716|ref|ZP_02477495.1| ribosomal protein S6 modification protein [Haemophilus parasuis 29755] gi|167854130|gb|EDS25365.1| ribosomal protein S6 modification protein [Haemophilus parasuis 29755] Length = 301 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 19/188 (10%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIV 143 A AL+ DK +S Q +++CG+PV ++L+ ++ L P VIK L G +G++ Sbjct: 107 AFALARDKWQSLQRLAACGIPVPDTLLMGELYSVAEGLSQSGLPAVIKTLSGSQGVGVM- 165 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFY 200 + ++ S L LL++ LL + ++ G ++ V+GD + E +F Sbjct: 166 LAENHSGALSLLETLKSAKVPSLL-QTFIAEAKGQDIRAFVIGDQVVATMERTGASGEFR 224 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + + + + + A+ Q++A A +AIG ++ D + + + L Sbjct: 225 ANIHRGGTAQAIQLSDAE---------QKIAVQAAKAIGL-DVAGVDLIRS--QQGIMVL 272 Query: 261 EINVQPGM 268 E+N PG+ Sbjct: 273 EVNASPGL 280 >gi|332710219|ref|ZP_08430170.1| cyanophycin synthetase [Lyngbya majuscula 3L] gi|332350998|gb|EGJ30587.1| cyanophycin synthetase [Lyngbya majuscula 3L] Length = 892 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 +SGIL L+ DK +KQ++ GVPV P RF D + I P VIKPL G Sbjct: 207 NYSGILGVELACDKEGTKQILRDAGVPV-PRGTTIRFLDDLEGAIEDVGGYPIVIKPLNG 265 Query: 136 GSSLGI 141 GI Sbjct: 266 NHGRGI 271 >gi|330884072|gb|EGH18221.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 87 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TMDSQHLISPPYVIKPLKGGSSL 139 SG+LASAL+MDK+R+KQV S G+ ++L N + + + P ++KP GSS+ Sbjct: 2 SGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSI 61 Query: 140 GI 141 G+ Sbjct: 62 GM 63 >gi|108862934|gb|ABA99832.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] Length = 674 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P ++ + I P +IKP GG G+ ++++ Sbjct: 152 DKSASKRIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + +L + ++ + G + LL+E+Y+ + + GD +V + Y Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262 Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 E + SL H PA + + A A +A+G +F+ D LS + Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321 Query: 257 VFWLEINVQ 265 +++E+N + Sbjct: 322 FYFMEMNTR 330 >gi|67901552|ref|XP_681032.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4] gi|40742361|gb|EAA61551.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4] Length = 1057 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 28/245 (11%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMD 92 +D++ V LV H A + +H +G E ++ L + G A + D Sbjct: 106 LDIELLVRLVQQH-----AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGD 160 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIV 143 K+R+KQ+ VPV PS+ + T + H + P +IK + GG GI + Sbjct: 161 KLRAKQLAVENNVPVLPSLEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRL 220 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYS 201 + +D + + S++ + + +E+ +DG + ++GD DV + + D S Sbjct: 221 VHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHIEIQIVGDGK-DVQHLW--ERDC-S 276 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA---HQAIGCRGISRSDFLFDPLSRKVF 258 + ++ + + P+ I + V R+A A +AI R + +FL + + + Sbjct: 277 VQRRFQKI--VEIAPSLIRDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFY 334 Query: 259 WLEIN 263 +LEIN Sbjct: 335 FLEIN 339 >gi|134293847|ref|YP_001117583.1| argininosuccinate lyase [Burkholderia vietnamiensis G4] gi|134137004|gb|ABO58118.1| Argininosuccinate lyase [Burkholderia vietnamiensis G4] Length = 860 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 22/138 (15%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A AL DK+R + + VP + + + D+ ++ P ++KP +G S+G+ +++ Sbjct: 100 AVALCRDKLRLQDTLRDHSVPYPYTTAIE--SADAARKLTYPVIVKPRQGTGSIGVRLVE 157 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 ++Q P G + ++++ G E + DA L VT + K + Sbjct: 158 REQDFP--------DTSGGAFICQRFIPGAEFSVESFSDADGHHVLAVTRKFLTKPPHF- 208 Query: 202 YELKYSSLNSTHVLPAKI 219 L HVLPA + Sbjct: 209 -------LELAHVLPADL 219 >gi|256378666|ref|YP_003102326.1| hypothetical protein Amir_4648 [Actinosynnema mirum DSM 43827] gi|255922969|gb|ACU38480.1| protein of unknown function DUF201 [Actinosynnema mirum DSM 43827] Length = 404 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 19/215 (8%) Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGV-PVCPSIL-VNRFTMDSQHLISPPYVIKPL 133 E+ H+ A L DK + ++ G+ PV ++ + +D+ I P V KPL Sbjct: 88 EVGIAHTSPEAIRLCKDKSALRGHLAEAGLSPVRFAVAHTGQEAVDAAGRIGFPLVCKPL 147 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-------QLLIEQYVDGIELTCG-VMGDA 185 G S+G++ + + +++ GD +L+E+Y++G E + V+ D Sbjct: 148 ALGGSIGVVRADDEAGLREAFAIAATAKAGDGTASKLAGVLLEEYLEGPEFSVDCVVWDG 207 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGIS 244 +A F Y + L HV+PA+ P E RL AH+A+G R ++ Sbjct: 208 VAHPLVVAEKVLGFPPY---FEELG--HVVPAE-PSPAIDEAVRLVREAHRAVGLDRLVT 261 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++F P ++ +EINV+ G + + ++A+ Sbjct: 262 HTEFRLTPDGPRI--IEINVRLGGDLIPLLGKLAS 294 >gi|297204798|ref|ZP_06922195.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197712508|gb|EDY56542.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 420 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 + +K KQ + GV S LV + +D+ + P VIKP G S G+++ Sbjct: 109 ARNKYAMKQAFLAAGVQAPDSRLVQSEQELLDAIESVGLPVVIKPYDFGGSGGVVLATTR 168 Query: 148 QSIPLDLLQS--------SSWN-HGDQLLIEQYVD-----GIELTCGVMGDASLDVTEIA 193 + L +S SS+N GD+ L+EQ++D +E+ CG L VTE Sbjct: 169 EEAVAGLAESKAVIAQYGSSFNILGDKYLVEQFIDSDDEVSVEVLCGAGRAQVLAVTEKY 228 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDP 252 + +++ H++P+ D + LA A A+G RG++ + FD Sbjct: 229 LSPRPWFA--------EVAHLVPSHRTGDPV--LTDLAVRACTALGIDRGLAHVEIKFD- 277 Query: 253 LSRKVFW-LEINVQPG 267 + W +E+ +PG Sbjct: 278 -ADGTAWVIEVAARPG 292 >gi|115489478|ref|NP_001067226.1| Os12g0605800 [Oryza sativa Japonica Group] gi|110810425|sp|Q2QMG2|MCCA_ORYSJ RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Short=MCCase subunit alpha; AltName: Full=3-methylcrotonyl-CoA carboxylase 1; AltName: Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; Flags: Precursor gi|108862933|gb|ABA99831.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113649733|dbj|BAF30245.1| Os12g0605800 [Oryza sativa Japonica Group] gi|215768297|dbj|BAH00526.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617434|gb|EEE53566.1| hypothetical protein OsJ_36794 [Oryza sativa Japonica Group] Length = 737 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P ++ + I P +IKP GG G+ ++++ Sbjct: 152 DKSASKRIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + +L + ++ + G + LL+E+Y+ + + GD +V + Y Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262 Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 E + SL H PA + + A A +A+G +F+ D LS + Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321 Query: 257 VFWLEINVQ 265 +++E+N + Sbjct: 322 FYFMEMNTR 330 >gi|296808505|ref|XP_002844591.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238844074|gb|EEQ33736.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 668 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 27/127 (21%) Query: 98 QVVSSCGVPVCP---------SILVNRF---------------TMDSQHLISPPYVIKPL 133 +V G+P CP L ++F T+D ++ + P ++KP Sbjct: 308 KVAQQFGLPTCPPEGLRTATNKYLTSKFVGHNAHHACSMDEALTIDRENELPYPLIVKPC 367 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASLDVTEI 192 G SS G+ + +++ + + HG + ++EQY DG E V+ D + +EI Sbjct: 368 DGWSSEGVSRVDSPEALTQAIRSIDTSRHGTEFVMEQYCDGPEFDANFVLLDGEVLFSEI 427 Query: 193 A--VPKS 197 +PKS Sbjct: 428 CDDLPKS 434 >gi|329925226|ref|ZP_08280169.1| ATP-grasp domain protein [Paenibacillus sp. HGF5] gi|328940059|gb|EGG36392.1| ATP-grasp domain protein [Paenibacillus sp. HGF5] Length = 391 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIV 143 ++ LS +K + KQ GV + V + ++SPP + K + GG+S GI+ Sbjct: 96 SALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPVIFKAVDGGASKGIVK 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + D ++E++++G E G + + +P DF Y Sbjct: 156 VADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEF--GAQAFVYDNQIQFIMPHGDFVFY- 212 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAF-----------LAHQAIGCRGISRSDFLFDP 252 + + H +P ++P +EVQ+ F L H AI +DF+ Sbjct: 213 -GDTGVPIGHYVPYELP----EEVQQDLFSQLKQSIEALELNHCAI------NADFILK- 260 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEM-AAYAGYSFRELLL 290 V+ LEI + G T PE+ + + G+ + E ++ Sbjct: 261 -DGHVYVLEIGGRAGAT---CLPELVSTFYGFDYYEQII 295 >gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2] gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2] Length = 856 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 28/184 (15%) Query: 22 CASALEDAGF-------KVSQIDVDRSVG-----LVLAHLKPDLAFNVL-HGNFGEDGLV 68 CASALED F ++ ++D D +G +V A +K ++ + L G+ + G Sbjct: 121 CASALEDTPFDLPGALAQLRELDEDVRLGPSTGSIVEAAVKRNIPYRRLTEGSLVQFGWG 180 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----- 123 + S + A++ DK +K+++ + GVPV P R D + Sbjct: 181 SRQRRIQAAETDLSSAIGEAIAQDKELTKKLLEAAGVPV-PQ---GRPVADIEDAWVAMC 236 Query: 124 -ISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I+ P V+KPL G G+ V + ++ L++ +++ ++L+E+++ G + Sbjct: 237 EIAGPVVVKPLDGNQGKGVTVNIVTREH---LEIAYAAAAKISSEVLLERFIPGSDFRML 293 Query: 181 VMGD 184 V+GD Sbjct: 294 VVGD 297 >gi|261405317|ref|YP_003241558.1| phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281780|gb|ACX63751.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein [Paenibacillus sp. Y412MC10] Length = 391 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIV 143 ++ LS +K + KQ GV + V + ++SPP + K + GG+S GI+ Sbjct: 96 SALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPLIFKAVDGGASKGIVK 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + D ++E++++G E G + + +P DF Y Sbjct: 156 VADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEF--GAQAFVYDNQIQFIMPHGDFVFY- 212 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAF-----------LAHQAIGCRGISRSDFLFDP 252 + + H +P ++P +EVQ+ F L H AI +DF+ Sbjct: 213 -GDTGVPIGHYVPYELP----EEVQQDLFSQLKQSIEALELNHCAI------NADFILK- 260 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEM-AAYAGYSFRELLL 290 V+ LEI + G T PE+ + + G+ + E ++ Sbjct: 261 -DGHVYVLEIGGRAGAT---CLPELVSTFYGFDYYEQII 295 >gi|77166901|gb|ABA62425.1| D-alanine-D-alanine ligase [Clostridium perfringens] Length = 106 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + +++IE+Y+ G E+TC ++ L V I PK F+ KY + + Sbjct: 4 EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 ++ ++KEV+++A ++ + C +R D L Sbjct: 62 ELNEYLHKEVEKMALETYKLLKCDVYARVDML 93 >gi|317053027|ref|YP_004119381.1| hypothetical protein Pat9b_4261 [Pantoea sp. At-9b] gi|316953354|gb|ADU72825.1| protein of unknown function DUF201 [Pantoea sp. At-9b] Length = 415 Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 16/102 (15%) Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSL 139 ++L DK + V G+ V P F+ D + L P V+KPL S Sbjct: 110 TSLRRDKYLMNEAVGRAGLKVTPQT----FSHDPEVLKKWFRQLGKPKVVVKPLDSAGSD 165 Query: 140 GIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDGIE 176 + + ++ I +L Q+S NH LI+Q++DG E Sbjct: 166 DVYICTNEKQIETAVLAITGKQNSMHNHNHNALIQQFIDGTE 207 >gi|259484115|tpe|CBF80060.1| TPA: pyruvate carboxylase, putative (AFU_orthologue; AFUA_5G07570) [Aspergillus nidulans FGSC A4] Length = 653 Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 28/245 (11%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMD 92 +D++ V LV H A + +H +G E ++ L + G A + D Sbjct: 64 LDIELLVRLVQQH-----AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGD 118 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIV 143 K+R+KQ+ VPV PS+ + T + H + P +IK + GG GI + Sbjct: 119 KLRAKQLAVENNVPVLPSLEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRL 178 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYS 201 + +D + + S++ + + +E+ +DG + ++GD DV + + D S Sbjct: 179 VHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHIEIQIVGDGK-DVQHLW--ERDC-S 234 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA---HQAIGCRGISRSDFLFDPLSRKVF 258 + ++ + + P+ I + V R+A A +AI R + +FL + + + Sbjct: 235 VQRRFQKI--VEIAPSLIRDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFY 292 Query: 259 WLEIN 263 +LEIN Sbjct: 293 FLEIN 297 >gi|306840400|ref|ZP_07473165.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2] gi|306289638|gb|EFM60842.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2] Length = 436 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 60 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 117 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 118 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 173 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 174 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 233 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 234 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 275 >gi|289661864|ref|ZP_06483445.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289666948|ref|ZP_06488023.1| ribosomal protein S6 modification protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 74/141 (52%), Gaps = 12/141 (8%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125 A+L LE T++ + A+ + DK+R+ Q++++ G+ + P + D+Q L+S Sbjct: 85 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180 PP+V+K +G G+I+ +K S ++++ + + ++++++ +G +L C Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201 Query: 181 VMGDASLDVTEIAVPKSDFYS 201 V+GD + + DF S Sbjct: 202 VVGDTVVAAMRRQAAEGDFRS 222 >gi|311104878|ref|YP_003977731.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8] gi|310759567|gb|ADP15016.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8] Length = 871 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + GN + G A + + +A +S DK +K+++S+CGVPV LV Sbjct: 182 IRLFEGNLVQFGYGSAQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVR 241 Query: 115 RF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P V+KP G G+ + + + + + G +++E++V Sbjct: 242 SEDDAWEAAEDIGLPVVVKPYDGNHGRGVFTNLTTREEVVSAYRVAV-DEGSGVIVERFV 300 Query: 173 DGIELTCGVMGD 184 G E V+GD Sbjct: 301 LGNEHRLLVVGD 312 >gi|307324575|ref|ZP_07603782.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces violaceusniger Tu 4113] gi|306889819|gb|EFN20798.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces violaceusniger Tu 4113] Length = 747 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P + T D + I P ++KP GG G+ ++ +D Sbjct: 136 DKIRAKETVHTAGVPVVPGSSGSGLTDDQLTAAAREIGMPVLLKPSAGGGGKGMRLV-RD 194 Query: 148 QSIPLDLLQSSSWNHG-----DQLLIEQYVD 173 +++ D + ++ D LL+E+++D Sbjct: 195 EALLADEIAAARREARGAFGDDTLLVERWID 225 >gi|222869522|gb|EEF06653.1| predicted protein [Populus trichocarpa] Length = 393 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117 GN + G A + + +A ++ DK +K+++++CGVPV +V+ Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVHSPEEA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDG 174 + I P +KP G + G+ + +D++ L Q G +++E+++DG Sbjct: 248 WEVAQDIGFPVTVKPSDGNHARGVTLDLRDEADIKAAFALAQPE----GSDVIVERFIDG 303 Query: 175 IELTCGVMG 183 E V+G Sbjct: 304 TEHRILVVG 312 >gi|118468949|ref|YP_888976.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium smegmatis str. MC2 155] gi|118170236|gb|ABK71132.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium smegmatis str. MC2 155] Length = 669 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 22/173 (12%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69 +E +V++ G A A + S +D+D VG A A + +G E+ Sbjct: 49 TEADVAVCIGPAAA--------RHSYLDIDAVVGA--ARRTDAQAVHPGYGFLSENAEFA 98 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--- 126 + L I + A A DK+ +K VS+ GVPV P I +R + LI+ Sbjct: 99 SALATAGIVFIGPPASAIATMGDKIAAKAAVSAFGVPVVPGI--SRPGLADDDLIAGAAE 156 Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV 172 P ++KP GG G+ V++ +P L+ ++ + D L +E++V Sbjct: 157 VGYPVLVKPSAGGGGKGMRVVEAAADLPAALVSARREAGAAFGDDTLFLERFV 209 >gi|258510765|ref|YP_003184199.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477491|gb|ACV57810.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1201 Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 20/185 (10%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K ++ V GVP+ P + R D + L I P ++K GG +G+ V+++ Sbjct: 116 KHVARDVARRAGVPLLPGTDLVR---DLEELRCVCADIGYPVILKSTAGGGGIGMRVVER 172 Query: 147 DQSIPLDLLQSSSWNHG-----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200 + ++ D +S G D + +E+YV + + G+ ++ I Sbjct: 173 EDALA-DAFESVRRLAGQHFRDDGVFVEKYVPRARHIEVQIFGNRQGELVAIGERDCTLQ 231 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 K HVL + + + A +A+G R +FL+DP S ++L Sbjct: 232 RRNQKVVEECPAHVLSD----ETRRRLHEAALSVARAVGYRSAGTVEFLYDPSSASFYFL 287 Query: 261 EINVQ 265 E+N + Sbjct: 288 EVNTR 292 >gi|225627395|ref|ZP_03785432.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str. Cudo] gi|225617400|gb|EEH14445.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str. Cudo] Length = 459 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 83 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298 >gi|237815337|ref|ZP_04594335.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str. 2308 A] gi|237790174|gb|EEP64384.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str. 2308 A] Length = 459 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 83 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298 >gi|161511139|ref|NP_539980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 1 str. 16M] gi|225852418|ref|YP_002732651.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis ATCC 23457] gi|256044579|ref|ZP_05447483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 1 str. Rev.1] gi|256264084|ref|ZP_05466616.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9] gi|260563930|ref|ZP_05834416.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M] gi|265991003|ref|ZP_06103560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 1 str. Rev.1] gi|225640783|gb|ACO00697.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis ATCC 23457] gi|260153946|gb|EEW89038.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M] gi|263001787|gb|EEZ14362.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 1 str. Rev.1] gi|263094288|gb|EEZ18149.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9] Length = 452 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|326408927|gb|ADZ65992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis M28] gi|326538643|gb|ADZ86858.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis M5-90] Length = 413 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 37 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 94 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 95 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 150 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 151 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 210 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 211 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 252 >gi|163843176|ref|YP_001627580.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis ATCC 23445] gi|163673899|gb|ABY38010.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis ATCC 23445] Length = 452 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|256113452|ref|ZP_05454293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 3 str. Ether] gi|265994840|ref|ZP_06107397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 3 str. Ether] gi|262765953|gb|EEZ11742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis bv. 3 str. Ether] Length = 452 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|16519926|ref|NP_444046.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234] gi|2493314|sp|P55641|Y4RH_RHISN RecName: Full=Uncharacterized protein y4rH gi|2182606|gb|AAB91833.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234] Length = 478 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQ 148 +K +QV+++ GVPV P + Q + I P V+KP G S G+ + + + Sbjct: 169 NKAAQRQVLAAAGVPV-PGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDAR 227 Query: 149 SIP--LDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVP 195 + D L W ++L+EQ+VDG +MGD + +TE P Sbjct: 228 ELAEHTDYLLGGKHMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPP 280 >gi|254523077|ref|ZP_05135132.1| ribosomal protein S6 modification protein [Stenotrophomonas sp. SKA14] gi|219720668|gb|EED39193.1| ribosomal protein S6 modification protein [Stenotrophomonas sp. SKA14] Length = 332 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 22/186 (11%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145 S DK+R+ Q++++ G+ + P + D+ L+S PP+V+K +G G+I+ + Sbjct: 137 SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 195 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 K S ++++ + + L+++++ G +L C V+GD + + P+ DF S Sbjct: 196 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 252 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + H + + Q++A + +A+G + D + +R LE+ Sbjct: 253 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEV 301 Query: 263 NVQPGM 268 N PG+ Sbjct: 302 NSTPGL 307 >gi|17983030|gb|AAL52244.1| biotin carboxylase [Brucella melitensis bv. 1 str. 16M] Length = 459 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 83 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298 >gi|254706885|ref|ZP_05168713.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M163/99/10] gi|254710007|ref|ZP_05171818.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis B2/94] gi|254716933|ref|ZP_05178744.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M13/05/1] gi|256031502|ref|ZP_05445116.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M292/94/1] gi|260168635|ref|ZP_05755446.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp. F5/99] gi|261218739|ref|ZP_05933020.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M13/05/1] gi|261314350|ref|ZP_05953547.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M163/99/10] gi|261317555|ref|ZP_05956752.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis B2/94] gi|261758108|ref|ZP_06001817.1| acetyl-CoA carboxylase [Brucella sp. F5/99] gi|265988589|ref|ZP_06101146.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M292/94/1] gi|260923828|gb|EEX90396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M13/05/1] gi|261296778|gb|EEY00275.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis B2/94] gi|261303376|gb|EEY06873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M163/99/10] gi|261738092|gb|EEY26088.1| acetyl-CoA carboxylase [Brucella sp. F5/99] gi|264660786|gb|EEZ31047.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella pinnipedialis M292/94/1] Length = 452 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|23501792|ref|NP_697919.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis 1330] gi|62289849|ref|YP_221642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 1 str. 9-941] gi|82699775|ref|YP_414349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella melitensis biovar Abortus 2308] gi|148560130|ref|YP_001258883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ovis ATCC 25840] gi|161618864|ref|YP_001592751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella canis ATCC 23365] gi|189024091|ref|YP_001934859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus S19] gi|254693638|ref|ZP_05155466.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 3 str. Tulya] gi|254697290|ref|ZP_05159118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 2 str. 86/8/59] gi|254701670|ref|ZP_05163498.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 5 str. 513] gi|254704213|ref|ZP_05166041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 3 str. 686] gi|254719009|ref|ZP_05180820.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp. 83/13] gi|254730188|ref|ZP_05188766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 4 str. 292] gi|256061011|ref|ZP_05451168.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella neotomae 5K33] gi|256257405|ref|ZP_05462941.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 9 str. C68] gi|256369334|ref|YP_003106842.1| acetyl-CoA carboxylase [Brucella microti CCM 4915] gi|260545404|ref|ZP_05821145.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038] gi|260566539|ref|ZP_05837009.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40] gi|260757877|ref|ZP_05870225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 4 str. 292] gi|260761700|ref|ZP_05874043.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 2 str. 86/8/59] gi|260883680|ref|ZP_05895294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 9 str. C68] gi|261213904|ref|ZP_05928185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 3 str. Tulya] gi|261325011|ref|ZP_05964208.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella neotomae 5K33] gi|261752222|ref|ZP_05995931.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 5 str. 513] gi|261754881|ref|ZP_05998590.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 3 str. 686] gi|265983999|ref|ZP_06096734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp. 83/13] gi|297248254|ref|ZP_06931972.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5 str. B3196] gi|306840104|ref|ZP_07472890.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653] gi|306843804|ref|ZP_07476402.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1] gi|23347723|gb|AAN29834.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis 1330] gi|62195981|gb|AAX74281.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 1 str. 9-941] gi|82615876|emb|CAJ10880.1| Acetyl-CoA carboxylase, biotin carboxylase:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase l [Brucella melitensis biovar Abortus 2308] gi|148371387|gb|ABQ61366.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ovis ATCC 25840] gi|161335675|gb|ABX61980.1| Acetyl-CoA carboxylase [Brucella canis ATCC 23365] gi|189019663|gb|ACD72385.1| acetyl-CoA carboxylase [Brucella abortus S19] gi|255999494|gb|ACU47893.1| acetyl-CoA carboxylase [Brucella microti CCM 4915] gi|260096811|gb|EEW80686.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038] gi|260156057|gb|EEW91137.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40] gi|260668195|gb|EEX55135.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 4 str. 292] gi|260672132|gb|EEX58953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 2 str. 86/8/59] gi|260873208|gb|EEX80277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 9 str. C68] gi|260915511|gb|EEX82372.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 3 str. Tulya] gi|261300991|gb|EEY04488.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella neotomae 5K33] gi|261741975|gb|EEY29901.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 5 str. 513] gi|261744634|gb|EEY32560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis bv. 3 str. 686] gi|264662591|gb|EEZ32852.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp. 83/13] gi|297175423|gb|EFH34770.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5 str. B3196] gi|306275882|gb|EFM57598.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1] gi|306404832|gb|EFM61125.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653] Length = 452 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|254689155|ref|ZP_05152409.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 6 str. 870] gi|260754654|ref|ZP_05867002.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 6 str. 870] gi|260674762|gb|EEX61583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus bv. 6 str. 870] Length = 452 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|20094191|ref|NP_614038.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] gi|19887210|gb|AAM01968.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] Length = 379 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 24/206 (11%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 G ++ LE I S + + +DK+R+K+ VP +V + + IS Sbjct: 79 GEMKEELEAEGIRVVASDRESVEIGIDKVRTKRAFEELNVPTPEWEVVE----NERPSIS 134 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 PP V+K + + LG+ V + + + L+E++++G E++ V+ Sbjct: 135 PPVVVKDPRSQAGLGVTVHETHKP-----------RVSGRKLVEEFIEGAEVSIEVLSWD 183 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V + V K S + ++ + PA I + ++++R A + +G G Sbjct: 184 GEVVPLVPVFKG---STADRRHPIDRMRMSPAPIDPSVERKIRRCAVRVVEHLGLEG--- 237 Query: 246 SDFLFDPLSRK-VFW-LEINVQPGMT 269 + FD + R+ FW LE N +P T Sbjct: 238 -NVDFDVVVRENEFWFLEFNPRPSGT 262 >gi|294852261|ref|ZP_06792934.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026] gi|294820850|gb|EFG37849.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026] Length = 413 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 37 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 94 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 95 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 150 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 151 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 210 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 211 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 252 >gi|256159627|ref|ZP_05457389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M490/95/1] gi|256254907|ref|ZP_05460443.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti B1/94] gi|261222089|ref|ZP_05936370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti B1/94] gi|265998054|ref|ZP_06110611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M490/95/1] gi|260920673|gb|EEX87326.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti B1/94] gi|262552522|gb|EEZ08512.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti M490/95/1] Length = 452 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110 + +H +G E+ ILE +I + G AS + + DK+ +K+ G+PV P Sbjct: 76 DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133 Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + R + I P +IK GG G+ V + + +P+ L + S Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189 Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D + IE+Y++ + VMGD + + + K ++ L A Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ + A +G RG +FL++ + +++E+N + Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291 >gi|88855540|ref|ZP_01130204.1| ribosomal protein S6 modification protein [marine actinobacterium PHSC20C1] gi|88815447|gb|EAR25305.1| ribosomal protein S6 modification protein [marine actinobacterium PHSC20C1] Length = 396 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 31/201 (15%) Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NR--FTMDSQHLISPPYVIKPLK 134 P T SGI S DK+R+ Q++S + + + V NR M + + P VIK L+ Sbjct: 88 PNTSSGITNS---RDKLRATQILSRHDIAMPATTFVHNRADVEMAIERVGGAPVVIKLLE 144 Query: 135 GGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDV 189 G +G+I+ Q ++ L S+ N +LI+ ++ G ++ V+GD + Sbjct: 145 GTQGIGVILAPDTQVAKAIIETLHSTKQN----VLIQSFISESKGRDIRALVVGDRVVAA 200 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSD 247 +F S + ++ + + P E R A A Q +G R G+ + Sbjct: 201 MRRVAVGDEFRSNVHRGGNVEAVELTP---------EYHRAAVKAAQIMGLRVAGVDMLE 251 Query: 248 FLFDPLSRKVFWLEINVQPGM 268 PL +E+N PG+ Sbjct: 252 GNDGPL-----VMEVNSSPGL 267 >gi|298480513|ref|ZP_06998710.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22] gi|298273334|gb|EFI14898.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22] Length = 371 Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 125 SPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 S P ++KP+ G S G+ + K+D + LD +S N + +LIE+Y++G E++ + Sbjct: 132 SYPVIVKPVDGSCSNGVTKVSRKEDFAQALDRALQASCN--NCILIEEYIEGREVSVESI 189 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-R 241 S + +D + Y + + H P+ +P DI ++++ AIG Sbjct: 190 ---SFHGKHYVITITDKETTGAPY-FVETAHHQPSNLPFDIQEKLKCAVKSMLDAIGINN 245 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPG 267 G S ++F D + +F++E+ + G Sbjct: 246 GASHAEFKIDQ-NGNIFFIEVGARGG 270 >gi|120405044|ref|YP_954873.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium vanbaalenii PYR-1] gi|119957862|gb|ABM14867.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 660 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 +G E+ L+ I + + A DK+ +K VS GVPV P I +R + Sbjct: 82 YGFLSENAQFAEALDAAGIAFIGPPVAAIQTMGDKISAKAAVSEFGVPVVPGI--SRPGL 139 Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168 Q LI+ P ++KP GG G+ V++ + L+ +++S D L + Sbjct: 140 TDQDLIAGAADVGFPVLVKPSAGGGGKGMRVVQDASELRAALVSARREAASAFGDDTLFL 199 Query: 169 EQYV 172 E++V Sbjct: 200 ERFV 203 >gi|270159026|ref|ZP_06187682.1| RimK family alpha-L-glutamate ligase [Legionella longbeachae D-4968] gi|289166137|ref|YP_003456275.1| ribosomal protein S6 modification protein [Legionella longbeachae NSW150] gi|269987365|gb|EEZ93620.1| RimK family alpha-L-glutamate ligase [Legionella longbeachae D-4968] gi|288859310|emb|CBJ13245.1| ribosomal protein S6 modification protein [Legionella longbeachae NSW150] Length = 302 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 44/202 (21%), Positives = 94/202 (46%), Gaps = 26/202 (12%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134 YT + +A + S DK+RS Q+++ G+P+ P + D++ L+ P VIK L+ Sbjct: 87 YTLNESIAISRSRDKLRSLQLLARKGIPM-PLTSFAQSPDDTEDLVRMVGGAPLVIKLLE 145 Query: 135 GGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDV 189 G G+I+ QS ++ + N +L++++++ G+++ C V+G+ + Sbjct: 146 GTQGKGVILADSHQSAVSIINAFKEMRAN----ILVQEFIEESRGVDIRCFVVGEKIVAA 201 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + +F + + H + + + E + +A A + +G + ++ D + Sbjct: 202 VKRQAKEGEFRA---------NVHQGGTAVKVKLSPEERTIAIRAAKTMGLK-VAGVDLI 251 Query: 250 FDPLSRKVFWLEINVQPGMTPV 271 + LEIN PG+ V Sbjct: 252 RS--NHGPLVLEINSSPGLEGV 271 >gi|108803106|ref|YP_643043.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus DSM 9941] gi|108764349|gb|ABG03231.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus DSM 9941] Length = 388 Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 26/165 (15%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG-SSLGII 142 + ++R K+ V GV V P V D + L + P V+K GG G Sbjct: 104 TQHRLREKRAVEEAGVRVAPYEPVR----DGEDLRAALRRLGTPCVLKTATGGYDGRGQR 159 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 VI+ + P L + S G +L++E++V + L V P + ++ Sbjct: 160 VIRSEDEAPAALSELS--GEGTELVLERFV---------RFEKELSVIAARTPGGEVRTF 208 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + ++ ++PA+IP ++ +E +R+A + +G G+ Sbjct: 209 PPAENVHVDNILHLSIVPARIPREVQEEARRMAVRVAEGLGVVGL 253 >gi|322824069|gb|EFZ29605.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi] Length = 679 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K SK+++ + GVPV P + + I P +IK + GG G+ ++K Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185 Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203 L L +S ++ D++++E+YV + C + D + + + D S + Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGN--GVFFFERD-CSVQ 242 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 ++ + P P ++ + ++ A +A+G G +F+FD F++E+N Sbjct: 243 RRHQKVIEEAPAPHITP-EMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMN 301 Query: 264 VQ 265 + Sbjct: 302 TR 303 >gi|282899544|ref|ZP_06307508.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii CS-505] gi|281195423|gb|EFA70356.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii CS-505] Length = 860 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136 ++GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 184 NTGILGVELACDKEATKRILANSGVPVPKGTVIN-FLDDLEEAIDYVGGYPIVIKPLDGN 242 Query: 137 SSLGIIV 143 GI + Sbjct: 243 HGRGITI 249 >gi|309779051|ref|ZP_07673818.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA] gi|308922116|gb|EFP67746.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA] Length = 886 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 11/135 (8%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++S DK +K ++ SCGVPV +V+ ++ I P V+KP G G+ Sbjct: 212 IAESISRDKDLTKSLLQSCGVPVPEGRMVDSAEDAWEAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196 ++ +++ ++ + + G+ +++E++V G E + G + A++ T V Sbjct: 272 TNLMTREE---VETAYAVAIEEGNGVIVERFVSGNEHRLLVVGGRLAAAAMGETASVVGD 328 Query: 197 SDFYSYELKYSSLNS 211 EL S +NS Sbjct: 329 GTSTIEELIESQINS 343 >gi|227488279|ref|ZP_03918595.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091849|gb|EEI27161.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum ATCC 51867] Length = 400 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 15/212 (7%) Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLG 140 + A+ LS +K+ K+V++ GV + P V R + + +S P VIK S G Sbjct: 97 VAAAQLSQNKIAMKRVLADHGV-MTPQFRVIRTLSELGDVCAELSFPLVIKAPDLQGSNG 155 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 I ++K D+ + + + + + L++E+++DG E + LD + V Sbjct: 156 IFIVKDDEEAQVAFVGAQQASKQESLIVEEFIDGTEFGAQAI---VLDNEILFVLCHGDE 212 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS-DFLFDPLSRKVFW 259 + K +++ +H +PA +P +I + A +A+G + + + D + D S+ Sbjct: 213 TVRAK-TNIPISHFVPANLPEEIQQRATTEVKKAIRALGLKNCAVNVDLILD--SQGCHI 269 Query: 260 LEINVQPGMTPVSIFPEMAA-YAGYSFRELLL 290 +E+ G + PE+ + G + EL+L Sbjct: 270 IELT---GRVGANGLPEVVGKWFGIDYYELIL 298 >gi|301632899|ref|XP_002945517.1| PREDICTED: cyanophycin synthetase-like [Xenopus (Silurana) tropicalis] Length = 582 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 GN + G A + + +A ++ DK +K+++++CGVPV +V Sbjct: 265 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGRVVAHAEEA 324 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + + I + G ++++EQ++DGIE Sbjct: 325 WEVAQDIGGPVTVKPSDGNHARGVTLELTGEAEIKAAFALAEP--EGSEVIVEQFIDGIE 382 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 383 HRLLVVGGKVVAATK 397 >gi|119776292|ref|YP_929032.1| ribosomal protein S6 modification protein [Shewanella amazonensis SB2B] gi|190360192|sp|A1SAF6|RIMK2_SHEAM RecName: Full=Ribosomal protein S6 modification protein 2 gi|119768792|gb|ABM01363.1| ribosomal protein S6 modification protein [Shewanella amazonensis SB2B] Length = 301 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 20/187 (10%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLIS-PPYVIKPLKGGSSLGIIVI 144 A S DK+R+ Q++S G+ + + N+ D +++ P VIK L+G +G+++ Sbjct: 95 ARSRDKLRALQLLSRKGIGMPVTGFANKPNNIPDLINMVGGAPLVIKLLEGTQGIGVVLA 154 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + ++ + + + +++++Y+ +G ++ C V+GD + P+ DF S Sbjct: 155 ETRKA--AESVIEAFLGLKANIMVQEYIKEANGSDIRCFVVGDKVVAAMRRQGPEGDFRS 212 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + H+ + P+ I + ++ A A +A+G ++ D L +R LE Sbjct: 213 ---------NLHLGGSAEPVKITPQERKSAVAAAKAMGLV-VAGVDILRS--ARGPLVLE 260 Query: 262 INVQPGM 268 +N PG+ Sbjct: 261 VNSAPGI 267 >gi|170768946|ref|ZP_02903399.1| ribosomal protein S6 modification protein [Escherichia albertii TW07627] gi|170122018|gb|EDS90949.1| ribosomal protein S6 modification protein [Escherichia albertii TW07627] Length = 314 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140 +A A + DK+RS Q+++ G+ + P + D+ LI P V+K ++G +G Sbjct: 106 VAIARARDKLRSMQLLARQGIDL-PVTGIAHSPDDTSDLIEMVGGAPLVVKLVEGTQGIG 164 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197 +++ + Q+ + N +L+++Y+ G ++ C V+GD + E + Sbjct: 165 VVLAETRQAAESVIDAFRGLNA--HILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEG 222 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DF S + S + ++ P + + I K + +A ++ D L +R Sbjct: 223 DFRSNLHRGGSASIANITPQEREIAI-KAARTMAL---------DVAGVDIL--RANRGP 270 Query: 258 FWLEINVQPGM 268 +E+N PG+ Sbjct: 271 LVMEVNASPGL 281 >gi|197122687|ref|YP_002134638.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter sp. K] gi|196172536|gb|ACG73509.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter sp. K] Length = 313 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128 LELL IP + G A S +KMRS Q++S+ GVPV +++ + + D L+ P Sbjct: 80 LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++K L G+++ + QS+ L + G ++++QY+ G Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182 >gi|121593082|ref|YP_984978.1| cyanophycin synthetase [Acidovorax sp. JS42] gi|120605162|gb|ABM40902.1| cyanophycin synthetase [Acidovorax sp. JS42] Length = 727 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 GN + G A + + +A ++ DK +K++++SCGVPV +V Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLASCGVPVPEGQIVRNADEA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + ++ I + G +++E+++DG+E Sbjct: 248 WEVAQEIGLPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGVE 305 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 306 HRLLVVGGKVVAATK 320 >gi|240850674|ref|YP_002972074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella grahamii as4aup] gi|240267797|gb|ACS51385.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella grahamii as4aup] Length = 452 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 19/218 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE +I + + DK+ +K+ G+PV P ++ Sbjct: 82 YGFLSENAKFADVLEAHDITFIGPTATHIRIMGDKIEAKKTAKKLGIPVVPGSDGAVTEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170 + + I P +IK GG G+ V+ +Q + L + S D + IE+ Sbjct: 142 SDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDAVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++ IE+ V+GD + + I + + D S + ++ + PA + K++ Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKVWEEATSPALNETE-RKKI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + A +G RG +FL++ + + +++E+N + Sbjct: 256 GSIVANACAQLGYRGAGTIEFLYE--NGEFYFIEMNTR 291 >gi|220917470|ref|YP_002492774.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955324|gb|ACL65708.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter dehalogenans 2CP-1] Length = 313 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128 LELL IP + G A S +KMRS Q++S+ GVPV +++ + + D L+ P Sbjct: 80 LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++K L G+++ + QS+ L + G ++++QY+ G Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182 >gi|239942496|ref|ZP_04694433.1| hypothetical protein SrosN15_15973 [Streptomyces roseosporus NRRL 15998] gi|239988960|ref|ZP_04709624.1| hypothetical protein SrosN1_16740 [Streptomyces roseosporus NRRL 11379] gi|291445952|ref|ZP_06585342.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291348899|gb|EFE75803.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 420 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 + + L DK+ K + + G+PV ++ + ++ +SPP+V+KP G + V Sbjct: 115 VRTAVLLRDKVAQKNALRAAGLPVADTLAIGDLGELAEPPMSPPFVVKPPLGAGTTDTWV 174 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + I LL S + +E +V G E+ Sbjct: 175 LRDEAEIAA-LLGSRGRDTAGPWAVESFVTGHEV 207 >gi|86158006|ref|YP_464791.1| S6 modification enzyme RimK [Anaeromyxobacter dehalogenans 2CP-C] gi|85774517|gb|ABC81354.1| S6 modification enzyme RimK [Anaeromyxobacter dehalogenans 2CP-C] Length = 313 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128 LELL IP + G A S +KMRS Q++S+ GVPV +++ + + D L+ P Sbjct: 80 LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++K L G+++ + QS+ L + G ++++QY+ G Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182 >gi|118378204|ref|XP_001022278.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Tetrahymena thermophila] gi|89304045|gb|EAS02033.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Tetrahymena thermophila SB210] Length = 673 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 16/183 (8%) Query: 93 KMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K SK ++++ VPV P + + I P +IK + GG G+ ++ K+ Sbjct: 116 KSESKIIMTNAKVPVVPGYHGENQDKDYLFEQARSIGFPVLIKAVLGGGGKGMRIVTKES 175 Query: 149 SIPLDLLQSSSWN-----HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + L+S+ D++LIE+Y+ + V GD + + S Sbjct: 176 EF-FEALESAKRESLKAFKDDRVLIEKYIQKPRHIEVQVFGDHHGNYVHLFERDC---SI 231 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + ++ + P+ I D+ + A A +A+G +F+FD +S + +++E+ Sbjct: 232 QRRHQKV--IEEAPSNINWDLRNSIGSSAVDAAKAVGYYNAGTVEFIFDLISNQYYFMEM 289 Query: 263 NVQ 265 N + Sbjct: 290 NTR 292 >gi|225683415|gb|EEH21699.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides brasiliensis Pb03] Length = 754 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 183 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 242 Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ +S + N D +L+E+Y+ + V D + +A+ + D S Sbjct: 243 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNC--VALGERD-CSI 299 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + ++ + P +P K++ A A A+G G +F+FD + + F++E+ Sbjct: 300 QRRHQKILEESPAP-HLPEATRKDIWDRARAAALAVGYEGAGTVEFIFDNDTGEFFFMEM 358 Query: 263 NVQ 265 N + Sbjct: 359 NTR 361 >gi|192360281|ref|YP_001983182.1| urea amidolyase-like protein [Cellvibrio japonicus Ueda107] gi|190686446|gb|ACE84124.1| urea amidolyase homolog [Cellvibrio japonicus Ueda107] Length = 1205 Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 22/186 (11%) Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQS 149 K +++++ + GVP+CP L+ +Q + I P ++K GG +G+ + D Sbjct: 116 KHKARELAQAAGVPLCPGTDLLPSLEDATQAANCIGYPVMLKSTAGGGGIGMQLCHSDSE 175 Query: 150 I--PLDLLQSSSWNH--GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + D ++ N+ D + +E+++ + V GD T +A+ + D Sbjct: 176 LIAAFDSVKRLGKNNFADDGVFLEKFIAAARHIEVQVFGDGQ--GTAVAIGERDC----- 228 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAF--LAHQAIGC---RGISRSDFLFDPLSRKVFW 259 SS + + P E QR A +A Q + R +F++D L + ++ Sbjct: 229 --SSQRRNQKVVEECPAPNLPEAQRQAMQQVAEQLLASVCYRNAGTVEFIYDSLDNRFYF 286 Query: 260 LEINVQ 265 LE+N + Sbjct: 287 LEVNTR 292 >gi|52840659|ref|YP_094458.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54293408|ref|YP_125823.1| hypothetical protein lpl0457 [Legionella pneumophila str. Lens] gi|54296450|ref|YP_122819.1| hypothetical protein lpp0481 [Legionella pneumophila str. Paris] gi|148360969|ref|YP_001252176.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella pneumophila str. Corby] gi|296105965|ref|YP_003617665.1| ribosomal protein S6 modification protein [Legionella pneumophila 2300/99 Alcoy] gi|81601534|sp|Q5WZC5|RIMK_LEGPL RecName: Full=Ribosomal protein S6 modification protein gi|81602014|sp|Q5X7X4|RIMK_LEGPA RecName: Full=Ribosomal protein S6 modification protein gi|81603541|sp|Q5ZYF8|RIMK_LEGPH RecName: Full=Ribosomal protein S6 modification protein gi|166977484|sp|A5IHI0|RIMK_LEGPC RecName: Full=Ribosomal protein S6 modification protein gi|52627770|gb|AAU26511.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750235|emb|CAH11629.1| hypothetical protein lpp0481 [Legionella pneumophila str. Paris] gi|53753240|emb|CAH14687.1| hypothetical protein lpl0457 [Legionella pneumophila str. Lens] gi|148282742|gb|ABQ56830.1| glutathione synthase, ribosomal protein S6 modification protein [Legionella pneumophila str. Corby] gi|295647866|gb|ADG23713.1| ribosomal protein S6 modification protein [Legionella pneumophila 2300/99 Alcoy] Length = 302 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134 YT + +A + S DK RS Q+++ G+P+ P + D++ LI P VIK L+ Sbjct: 87 YTLNESIAISRSRDKFRSLQLLARKGIPM-PLTSFAQSPDDTEDLIHMVGGAPLVIKLLE 145 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191 G G+I+ QS + ++ + H + +L++++++ G ++ C V+G+ + + Sbjct: 146 GTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCFVIGEKVVAAVK 203 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +F + + H + + + + + +A A + +G R ++ D + Sbjct: 204 RQAKDGEFRA---------NVHQGGKAVKVKLSPQERAIAVSAAKTMGLR-VAGVDLIRS 253 Query: 252 PLSRKVFWLEINVQPGM 268 + LEIN PG+ Sbjct: 254 --NHGPLVLEINSSPGL 268 >gi|307609223|emb|CBW98687.1| hypothetical protein LPW_04961 [Legionella pneumophila 130b] Length = 304 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134 YT + +A + S DK RS Q+++ G+P+ P + D++ LI P VIK L+ Sbjct: 89 YTLNESIAISRSRDKFRSLQLLARKGIPM-PLTSFAQSPDDTEDLIHMVGGAPLVIKLLE 147 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191 G G+I+ QS + ++ + H + +L++++++ G ++ C V+G+ + + Sbjct: 148 GTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCFVIGEKVVAAVK 205 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +F + + H + + + + + +A A + +G R ++ D + Sbjct: 206 RQAKDGEFRA---------NVHQGGKAVKVKLSPQERAIAVSAAKTMGLR-VAGVDLIRS 255 Query: 252 PLSRKVFWLEINVQPGM 268 + LEIN PG+ Sbjct: 256 --NHGPLVLEINSSPGL 270 >gi|260655589|ref|ZP_05861077.1| phosphoribosylamine--glycine ligase [Jonquetella anthropi E3_33 E1] gi|260630037|gb|EEX48231.1| phosphoribosylamine--glycine ligase [Jonquetella anthropi E3_33 E1] Length = 428 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLKGGSSL 139 G + L DK +K + + GVP S+L R T +++ +S PPYV+K + Sbjct: 96 GAAGARLESDKAFAKDFMRAAGVPTARSVLC-RSTAEAEAALSQFVPPYVVKATGLAAGK 154 Query: 140 GIIV---IKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIELTCGVMGDA 185 G+ V + S LLQ + G+Q+LIE+ + G EL+ ++ D Sbjct: 155 GVFVEPELSGALSACRQLLQDRTLGAAGEQVLIEEGLTGRELSVMIVTDG 204 >gi|222109852|ref|YP_002552116.1| cyanophycin synthetase [Acidovorax ebreus TPSY] gi|221729296|gb|ACM32116.1| cyanophycin synthetase [Acidovorax ebreus TPSY] Length = 723 Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 GN + G A + + +A ++ DK +K++++SCGVPV +V Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLASCGVPVPEGQIVRNADEA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + ++ I + G +++E+++DG+E Sbjct: 248 WEVAQEIGFPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGVE 305 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 306 HRLLVVGGKVVAATK 320 >gi|323358082|ref|YP_004224478.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium testaceum StLB037] gi|323274453|dbj|BAJ74598.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium testaceum StLB037] Length = 684 Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 18/219 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 +G E+ E I + G A + DK+ +K V + GVP P V R M Sbjct: 82 YGFLAENAAFARACEEAGIVFVGPGAEAIRVMGDKITAKHAVEARGVPTVPG--VARAGM 139 Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLI 168 LI+ P +IKP GG G+ V+++ ++P + + D L + Sbjct: 140 TDDELIAAGEEVGYPLLIKPSAGGGGKGMHVVEESAALPEAISAARREAAASFGDDTLFL 199 Query: 169 EQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 E+YV + V+ DA V + + K + +L A + + Sbjct: 200 ERYVRSPRHIEVQVLADAHGGVVHLGERECSLQRRHQKVIEEAPSPLLDA----ETRARI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQ 265 R A +++ RG +F+ + + F++E+N + Sbjct: 256 GRAACETARSVDYRGAGTVEFIVSAEAPGEFFFMEMNTR 294 >gi|226287033|gb|EEH42546.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides brasiliensis Pb18] Length = 716 Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 132 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 191 Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ +S + N D +L+E+Y+ + V D + +A+ + D S Sbjct: 192 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNC--VALGERD-CSI 248 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + ++ + P +P K++ A A A+G G +F+FD + + F++E+ Sbjct: 249 QRRHQKILEESPAP-HLPEATRKDIWDRARAAALAVGYEGAGTVEFIFDNDTGEFFFMEM 307 Query: 263 NVQ 265 N + Sbjct: 308 NTR 310 >gi|327352746|gb|EGE81603.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces dermatitidis ATCC 18188] Length = 724 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|312136984|ref|YP_004004321.1| hypothetical protein Mfer_0760 [Methanothermus fervidus DSM 2088] gi|311224703|gb|ADP77559.1| protein of unknown function DUF201 [Methanothermus fervidus DSM 2088] Length = 367 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P V+K KG + G++V I L + +L+E++++GIE++ V+ Sbjct: 134 VTKPVVLKNKKGQAGTGVVVTNSKDEITEYLKKYGV------VLMEEFINGIEISVEVLR 187 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVL------PAKIPLDIYKEVQRLAFLAHQA 237 + + V K ++L + H L PA+I ++V + + + Sbjct: 188 WEGKSLALVVVDKG--------RTTLEAVHPLYKIKKAPAQIKGLDNEKVLLFSRMIVNS 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + G + D +FD RKV+ +E+N +P T Sbjct: 240 LNAEGNTDIDMIFDEKLRKVYAIELNTRPSGT 271 >gi|163840600|ref|YP_001625005.1| phosphoribosylamine--glycine ligase [Renibacterium salmoninarum ATCC 33209] gi|162954076|gb|ABY23591.1| phosphoribosylamine--glycine ligase [Renibacterium salmoninarum ATCC 33209] Length = 434 Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 17/157 (10%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVI 130 IP A+ L K +KQV++S VP + R DS + PYV+ Sbjct: 87 IPVFGPSQAAAELEGSKAFAKQVMASASVPTA----MARVATDSAEALEALDTFGAPYVV 142 Query: 131 KPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 K + G++V +D+++ + ++ G ++IE+++DG E++ V+ D + DV Sbjct: 143 KDDGLAAGKGVVVTSDRDEAL---AHAQTCFDAGGTVVIEEFLDGPEVSLFVLSDGA-DV 198 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +A P DF + N T + A PLD E Sbjct: 199 VPLA-PAQDFKRIFDQDEGPN-TGGMGAYTPLDWVPE 233 >gi|332293409|ref|YP_004432018.1| protein of unknown function DUF201 [Krokinobacter diaphorus 4H-3-7-5] gi|332171495|gb|AEE20750.1| protein of unknown function DUF201 [Krokinobacter diaphorus 4H-3-7-5] Length = 388 Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 11/165 (6%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 ++ + E L++P+ + +S +K K++ +P + ++L S Sbjct: 80 MMARVAETLKLPFISEE--TAIISTNKFLMKELFLKNNLPCAKGV---ELAAAKEYLGSF 134 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDA 185 P +IKPL S G+++ + ++ + + + ++LL+E++++G E + G+ + Sbjct: 135 PVIIKPLDNSGSRGVVLCTTMDDLRVNFVDTFKYTKKNKLLVEEFIEGKEYSIEGLHFNG 194 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + V ++ + Y ++ H PA + DI E+ L Sbjct: 195 NHKVIAYTEKETTPFPYNVELG-----HKQPANLSDDIKLEISDL 234 >gi|261202142|ref|XP_002628285.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces dermatitidis SLH14081] gi|239590382|gb|EEQ72963.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces dermatitidis SLH14081] Length = 713 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|320034303|gb|EFW16248.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Coccidioides posadasii str. Silveira] Length = 711 Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + D I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S + DQ+LIE+Y+ + V D + + Sbjct: 213 ETFQDQLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+++ + A A+G G +F+FD + + +++E+ Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|239612092|gb|EEQ89079.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces dermatitidis ER-3] Length = 712 Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|294629482|ref|ZP_06708042.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp. e14] gi|292832815|gb|EFF91164.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp. e14] Length = 654 Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A A+S+ DK+R+K+ V + GVPV P S L + ++ I P ++KP GG Sbjct: 104 GPPADAISLMGDKIRAKETVRAAGVPVVPGSSGSGLSDDQLAEAAREIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD 173 G+ ++++ + ++ + D LL+E++VD Sbjct: 164 GGKGMRLVREADRLAEEIAAARREARASFGDDTLLVERWVD 204 >gi|119183643|ref|XP_001242830.1| hypothetical protein CIMG_06726 [Coccidioides immitis RS] Length = 711 Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + D I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S + DQ+LIE+Y+ + V D + + Sbjct: 213 ETFQDQLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+++ + A A+G G +F+FD + + +++E+ Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19] Length = 903 Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136 +GIL L+ DK +K+++++ G+PV ++N F D + I P VIKPL G Sbjct: 208 QTGILGVELACDKEATKRILANAGIPVPKGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGN 266 Query: 137 SSLGIIV 143 GI + Sbjct: 267 HGRGITI 273 >gi|86131134|ref|ZP_01049733.1| phosphoribosylamine-glycine ligase [Dokdonia donghaensis MED134] gi|85818545|gb|EAQ39705.1| phosphoribosylamine-glycine ligase [Dokdonia donghaensis MED134] Length = 422 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 14/137 (10%) Query: 64 EDGLVQAILELLEIPYTHSGI-------LASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 ED LVQ + + + + + + +AL K R+K+ + + +P Sbjct: 71 EDPLVQGVYDFFKADESLKNVAVIGPSKVGAALEGSKERAKEFMMAHNIPTAAYEAFTSE 130 Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIE 169 T+D + PYV+K + G+++I + +L GD ++IE Sbjct: 131 TLDKGQAFLETLQAPYVLKADGLAAGKGVLIIDNLEEAKQELANMLGGKFGDASATVVIE 190 Query: 170 QYVDGIELTCGVMGDAS 186 +++DGIEL+ V+ D Sbjct: 191 EFLDGIELSVFVLTDGK 207 >gi|282865014|ref|ZP_06274067.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp. ACTE] gi|282559937|gb|EFB65486.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp. ACTE] Length = 682 Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V++ GVPV P S L + S I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVAAAGVPVVPGSSGSGLTDAQLAGSAREIGMPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++++ + ++ + D LL+E+++D Sbjct: 169 RLVREEALLAEEIAAARREARASFGDDTLLVERWID 204 >gi|303319957|ref|XP_003069978.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109664|gb|EER27833.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 711 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + D I P +IK +KGG G+ + Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S + DQ+LIE+Y+ + V D + + Sbjct: 213 ETFQDKLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+++ + A A+G G +F+FD + + +++E+ Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328 Query: 263 NVQ 265 N + Sbjct: 329 NTR 331 >gi|298377508|ref|ZP_06987460.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19] gi|298265527|gb|EFI07188.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19] Length = 325 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146 +S+DK++ + +++ G S L IS P +KP++G +SL I + Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 ++I L + H D L+I++++DG E+ V D Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206 >gi|84387437|ref|ZP_00990456.1| D-ala D-ala ligase [Vibrio splendidus 12B01] gi|84377690|gb|EAP94554.1| D-ala D-ala ligase [Vibrio splendidus 12B01] Length = 384 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 23/180 (12%) Query: 23 ASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEI 77 A+AL ++GF++ + D+D + L K DL G G D + + LE+L + Sbjct: 55 ANALRESGFELVDVLAEDID--LAKQLESKKIDLVITNSGGLQGFDSMCHLPSTLEMLGV 112 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQHLISPP 127 PY + + + +K K + + G+P P I + N+ +D P Sbjct: 113 PYVGHSPMTAGILDNKHLFKHEIKAAGIPTAPFITIGIDEDFDSESNQSALDDIARRFPQ 172 Query: 128 -YVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +V+KP+ G +S+ + + + + ++ +++++ N ++IE Y+ G E V G+ Sbjct: 173 GFVVKPVSGRASIHVYPVFERSELKAVVNKVRNATNN---IVMIEPYLSGREFVVAVAGE 229 >gi|183220731|ref|YP_001838727.1| putative oxidase or carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910832|ref|YP_001962387.1| dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775508|gb|ABZ93809.1| Dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779153|gb|ABZ97451.1| Putative oxidase or carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 750 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 11/185 (5%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+ L++P +A + KMR + +P + + D+ ++ P Sbjct: 88 VAAVASALQLPGIRFVDAEAASNKVKMRKRLKEFGLPIPRFAPVWSMQDAKDALDELTFP 147 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186 V+KP + G+I + + + + + +L++E+Y++G EL+ + Sbjct: 148 LVMKPADNMGARGVIKVTNRDDLQVAFRHAKRFCPTGELILEEYMEGPELSVDALAFQGQ 207 Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243 + +T IA + + + Y E+ H +P+ +P D+ EV+R+ +A+G G Sbjct: 208 IRMTGIADRIIEREPYFIEV-------GHNMPSSLPKDVLDEVERVMAGGMRALGIHLGA 260 Query: 244 SRSDF 248 + D Sbjct: 261 GKGDI 265 >gi|319761498|ref|YP_004125435.1| cyanophycin synthetase [Alicycliphilus denitrificans BC] gi|330823367|ref|YP_004386670.1| cyanophycin synthetase [Alicycliphilus denitrificans K601] gi|317116059|gb|ADU98547.1| cyanophycin synthetase [Alicycliphilus denitrificans BC] gi|329308739|gb|AEB83154.1| cyanophycin synthetase [Alicycliphilus denitrificans K601] Length = 726 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 GN + G A + + +A ++ DK +K+++++CGVPV +V Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGRIVKNAEEA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + ++ I + G +++E+++DGIE Sbjct: 248 WEVAQEIGFPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGIE 305 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 306 HRLLVVGGKVVAATK 320 >gi|150007088|ref|YP_001301831.1| carbamoyl phosphate synthase-like protein [Parabacteroides distasonis ATCC 8503] gi|149935512|gb|ABR42209.1| carbamoylphosphate synthase large subunit [Parabacteroides distasonis ATCC 8503] Length = 325 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146 +S+DK++ + +++ G S L IS P +KP++G +SL I + Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 ++I L + H D L+I++++DG E+ V D Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206 >gi|326485213|gb|EGE09223.1| hypothetical protein TEQG_08173 [Trichophyton equinum CBS 127.97] Length = 672 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185 P ++KP G SS G+ + S+ + + + HG +L+IE Y DG E+ ++ D Sbjct: 366 PMIVKPCGGWSSEGVHRVDSQTSLEDAVRTALASRHGHELVIEPYCDGPEVDINLILQDG 425 Query: 186 SLDVTEIA--VPKS-DFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLA 234 L E++ +PK+ D L SL++ H V P+K+P ++ ++ R FLA Sbjct: 426 ELLFFEVSDDMPKTADINGQSL--GSLSNFHELYSVFPSKLP-EVELQLLRDTFLA 478 >gi|269836967|ref|YP_003319195.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter thermophilus DSM 20745] gi|269786230|gb|ACZ38373.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter thermophilus DSM 20745] Length = 1080 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 36/272 (13%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILEL----- 74 AS + ++ + D D S L L + F VL G DG V IL+ Sbjct: 588 ASIMINSNPETVSTDFDTSDRLYFEPLDEESVFEVLRHESGSDGRAPDVPVILQFGGQTA 647 Query: 75 --LEIPYTHSG--ILASA-----LSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL 123 L P G IL SA ++ D+ R ++ +++ G+P P V ++ Sbjct: 648 INLSEPLAARGVPILGSAREAIDIAEDRKRFERFLANLGIPQPPGDAVTSLEAAIEVAER 707 Query: 124 ISPPYVIKP--LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P +++P + GG ++ V+ + + L S +++ G +LI++Y+ G E+ Sbjct: 708 IGYPVLVRPSYVLGGRAME--VVHSREYLARYLETSVTFDTGHPVLIDKYLQGKEVEV-- 763 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQ---A 237 DA D E+ +P + S +S V P L++Y +EV ++ Q A Sbjct: 764 --DAICDGKEVLIPGIMEHIERAGVHSGDSFAVYPG---LNLYPREVDKIVEHTTQIALA 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +G G+ ++ + +++ LE+N + T Sbjct: 819 LGAVGLINIQYVIH--AGRIYVLEVNPRASRT 848 >gi|326469445|gb|EGD93454.1| hypothetical protein TESG_00999 [Trichophyton tonsurans CBS 112818] Length = 663 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185 P ++KP G SS G+ + S+ + + + HG +L+IE Y DG E+ ++ D Sbjct: 357 PMIVKPCGGWSSEGVHRVDSQTSLEDAVRTALASRHGHELVIEPYCDGPEVDINLILQDG 416 Query: 186 SLDVTEIA--VPKS-DFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLA 234 L E++ +PK+ D L SL++ H V P+K+P ++ ++ R FLA Sbjct: 417 ELLFFEVSDDMPKTADINGQSL--GSLSNFHELYSVFPSKLP-EVELQLLRDTFLA 469 >gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101] gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101] Length = 902 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 10/102 (9%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKG 135 +GIL L+ DK +K+++ GVPV P V R+ + Q I P VIKPL G Sbjct: 207 NQTGILGVELACDKEGTKRILKDAGVPV-PRGTVARYFDELQDAIEYVGGYPIVIKPLDG 265 Query: 136 GSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI + K+ DL + +S +++E+Y G Sbjct: 266 NHGRGITIDVKNWQEAEEAYDLARKASKTK--TVIVERYYTG 305 >gi|304405832|ref|ZP_07387490.1| urea carboxylase [Paenibacillus curdlanolyticus YK9] gi|304345075|gb|EFM10911.1| urea carboxylase [Paenibacillus curdlanolyticus YK9] Length = 1217 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 12/181 (6%) Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 K ++++ GVP+ P L+ + + +I P ++K GG +G+ V +++Q Sbjct: 116 KHSARELAEKAGVPMLPGTPLITELEQAVSAASVIGYPVILKSTAGGGGIGMRVCEEEQE 175 Query: 150 I-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + L +++ +G L + + + G+A +V + Sbjct: 176 LRSAFESVRHLAETNFKNGGVFLEKYIAKARHVEVQIFGNAFGEVVALGERDCSIQRRNQ 235 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K + + +++ + LA A G R +FL+DP S + ++LE+N Sbjct: 236 KVIEESPAPKFAQAVRERMFEAARSLAAEA----GYRSAGTVEFLYDPQSSEFYFLEVNT 291 Query: 265 Q 265 + Sbjct: 292 R 292 >gi|157092735|gb|ABV22540.1| truncated cyanophycin synthetase [synthetic construct] Length = 855 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|149369267|ref|ZP_01889119.1| phosphoribosylamine--glycine ligase [unidentified eubacterium SCB49] gi|149356694|gb|EDM45249.1| phosphoribosylamine--glycine ligase [unidentified eubacterium SCB49] Length = 422 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%) Query: 64 EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 ED LVQ I+ L ++ + L K R+K+ + + +P Sbjct: 71 EDPLVQGIVNYFGETPSLKKVKIIGPSKRGALLEGSKERAKEFMMAHNIPTAAYASFTAE 130 Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIE 169 T+D+ +SPP+V+K + G+++I+ +L S GD ++IE Sbjct: 131 TLDAGKEFLETLSPPFVLKADGLAAGKGVLIIEDISEAKTELEAMLSGKFGDASTTVVIE 190 Query: 170 QYVDGIELTCGVMGDA 185 +++DGIEL+ V+ D Sbjct: 191 EFLDGIELSVFVLTDG 206 >gi|320010673|gb|ADW05523.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Streptomyces flavogriseus ATCC 33331] Length = 682 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 12/102 (11%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A A+S+ DK+R+K+ V++ GVPV P S L + + I P ++KP GG Sbjct: 104 GPPAPAISLMGDKIRAKETVAAAGVPVVPGSSGSGLSDARLGAAAREIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKK-----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173 G+ ++++ D+ +S+ D LL+E+++D Sbjct: 164 GGKGMRLVREEALLADEIAAARREARASFGD-DTLLVERWID 204 >gi|157092738|gb|ABV22542.1| truncated cyanophycin synthetase [synthetic construct] Length = 849 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|157092729|gb|ABV22536.1| truncated cyanophycin synthetase [synthetic construct] Length = 856 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|126436212|ref|YP_001071903.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium sp. JLS] gi|126236012|gb|ABN99412.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Mycobacterium sp. JLS] Length = 662 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145 DK+ +K VS+ GVPV P V+R + LI+ P ++KP GG G+ V+ Sbjct: 116 DKIAAKAAVSAFGVPVVPG--VSRPGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVH 173 Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYV 172 +P L+ ++++ D L +E++V Sbjct: 174 DPAELPAALVSARREAAAAFGDDTLFLERFV 204 >gi|307152668|ref|YP_003888052.1| cyanophycin synthetase [Cyanothece sp. PCC 7822] gi|306982896|gb|ADN14777.1| cyanophycin synthetase [Cyanothece sp. PCC 7822] Length = 879 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 T SGILA L+ DK +K ++ G+PV P V ++ + + I P VIKPL G Sbjct: 207 TSSGILAVELACDKEGTKTILQDAGIPV-PKGTVIQYLDELEEAIKDVGGYPIVIKPLDG 265 Query: 136 GSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI + + DL ++S N ++IE+Y G Sbjct: 266 NHGRGITIDINSWEQAEEAYDLASAASKNR--SVIIERYYKG 305 >gi|157092726|gb|ABV22534.1| truncated cyanophycin synthetase [synthetic construct] Length = 862 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|157092732|gb|ABV22538.1| truncated cyanophycin synthetase [synthetic construct] Length = 856 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|160901140|ref|YP_001566722.1| cyanophycin synthetase [Delftia acidovorans SPH-1] gi|160366724|gb|ABX38337.1| cyanophycin synthetase [Delftia acidovorans SPH-1] Length = 730 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117 GN + G A + + +A ++ DK +K+++++CGVPV +V+ Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVHSPEEA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP G + G+ + +D++ + + + G +++E+++DG E Sbjct: 248 WEVAQDIGFPVTVKPSDGNHARGVTLDLRDEA-DIKAAFALAQPEGSDVIVERFIDGTEH 306 Query: 178 TCGVMG 183 V+G Sbjct: 307 RILVVG 312 >gi|108800596|ref|YP_640793.1| carbamoyl-phosphate synthase L chain, ATP-binding protein [Mycobacterium sp. MCS] gi|119869735|ref|YP_939687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium sp. KMS] gi|108771015|gb|ABG09737.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Mycobacterium sp. MCS] gi|119695824|gb|ABL92897.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Mycobacterium sp. KMS] Length = 662 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145 DK+ +K VS+ GVPV P V+R + LI+ P ++KP GG G+ V+ Sbjct: 116 DKIAAKAAVSAFGVPVVPG--VSRPGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVH 173 Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYV 172 +P L+ ++++ D L +E++V Sbjct: 174 DPAELPAALVSARREAAAAFGDDTLFLERFV 204 >gi|157092720|gb|ABV22530.1| truncated cyanophycin synthetase [synthetic construct] gi|157092723|gb|ABV22532.1| truncated cyanophycin synthetase [synthetic construct] Length = 866 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|157092717|gb|ABV22528.1| truncated cyanophycin synthetase [synthetic construct] Length = 870 Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Herminiimonas arsenicoxydans] gi|133740377|emb|CAL63428.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans] Length = 722 Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138 + +A +S DK +K ++ SCGVPV +VN ++ I P VIKPL G Sbjct: 208 QTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSAADAWEAAESIGLPVVIKPLDGNHG 267 Query: 139 LGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL------DV 189 G+ + D L + S +++E+++ G E ++G + + Sbjct: 268 RGVSTNLNTAADIEAAFLLAEQES----SDVIVERFIRGNEHRLLIVGGKLVAAARGEEA 323 Query: 190 TEIAVPKSDFYSYELKYSSLNS 211 T +A KS +EL S LNS Sbjct: 324 TIVADGKSSI--FELINSQLNS 343 >gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR] gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR] Length = 890 Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSS 138 +G + ++ DK+ +KQ++S G+PV P+ V R +D I+ VIKP G Sbjct: 204 TGCIGVDIAGDKILTKQILSEAGIPV-PNGGVARTEKEALDIMKRINNAVVIKPFNGNQG 262 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 G+ + + + + + + N+ D++++E+++ G Sbjct: 263 KGVALNLRSEG-EVKKAYAVATNYSDRVIVEKFITG 297 >gi|163868281|ref|YP_001609490.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella tribocorum CIP 105476] gi|161017937|emb|CAK01495.1| Biotin carboxylase [Bartonella tribocorum CIP 105476] Length = 452 Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 19/218 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE +I + + DK+ +K+ G+PV P ++ Sbjct: 82 YGFLSENAKFADVLEAHDITFIGPTAAHIRIMGDKIEAKKTAQKLGIPVVPGSDGAVSEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170 + + I P +IK GG G+ V+ +Q + L + S D + IE+ Sbjct: 142 SDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDAVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++ IE+ V+GD + + I + + D S + ++ + PA + K++ Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SIQRRHQKVWEEATSPALNETE-RKKI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + A +G RG +FL++ + + +++E+N + Sbjct: 256 GSIVANACAELGYRGAGTVEFLYE--NGEFYFIEMNTR 291 >gi|218883941|ref|YP_002428323.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus kamchatkensis 1221n] gi|218765557|gb|ACL10956.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus kamchatkensis 1221n] Length = 502 Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 23/193 (11%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKG--GSSLGIIV 143 + DK+ K + +P P LV + D + + P ++KP+KG G L I+ Sbjct: 106 FARDKLAVKTLAEKLEIPTLPWSLV-KNEEDLEEFVRTYGYPLILKPVKGNWGRGLRILW 164 Query: 144 IKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201 +KD+ L++ + + D ++ +E Y+ ++ + ++GD + Y Sbjct: 165 SEKDRDQLKTLIKEAEKIYRDSRIYVEPYITNVKHIEIQLIGDGEKVI--------HLYD 216 Query: 202 YELKYSSLNSTHVL---PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E N +L P+ + ++ +E + A +A+ R ++ +FL+D SR V Sbjct: 217 RECSIQD-NYMKILVEAPSTLQVNGLREKILNYALSIGEAMRLRNLATIEFLYDARSRSV 275 Query: 258 FWLEINVQPGMTP 270 F E+N+ G++P Sbjct: 276 FLNEVNM--GLSP 286 >gi|17231371|ref|NP_487919.1| cyanophycin synthetase [Nostoc sp. PCC 7120] gi|20137726|sp|P58572|CPHA_ANASP RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin synthase gi|17133013|dbj|BAB75578.1| cyanophycin synthetase [Nostoc sp. PCC 7120] Length = 901 Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|332519486|ref|ZP_08395953.1| phosphoribosylamine/glycine ligase [Lacinutrix algicola 5H-3-7-4] gi|332045334|gb|EGI81527.1| phosphoribosylamine/glycine ligase [Lacinutrix algicola 5H-3-7-4] Length = 431 Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGI 141 A+ L K +K+ + +P N T++ + + PPYV+K + G+ Sbjct: 107 AAELEGSKEFAKEFLYKHNIPTAAYKSFNAETVEDGYAFLETLKPPYVLKADGLAAGKGV 166 Query: 142 IVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 ++++ +L + + N +++IE+++DGIEL+C V+ D Sbjct: 167 VILEDINEAKTELKAMLVDAKFGNASTKVVIEEFLDGIELSCFVLTDGK 215 >gi|320591326|gb|EFX03765.1| d-alanine ligase [Grosmannia clavigera kw1407] Length = 367 Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 V KP +G S G+ V + + LQS + + +LIEQ++ G E+T VM A Sbjct: 171 VGKPARGRGSYGVKVCHTADELQDHVRELQSETMH----VLIEQFLAGEEVTVTVMPPAV 226 Query: 187 LDVTEI-AVPKSDFYSYELKYS--------SLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236 T+ A+P + +E + S NS V + K PL Y+ + R + Sbjct: 227 AGKTDYWALPVVTRFDHEDGIAPSNGSVAVSTNSRAVSDSDKDPL--YRALMRECEAVAR 284 Query: 237 AIGCRGISRSDFL--FDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYSF 285 A+G R D D S K L++N +P MT + +AA A G+ + Sbjct: 285 ALGTTAPIRVDARRHRDAASSKFALLDVNTKPNMTGPGRPGRDDQACLTLLAAEALGWEY 344 Query: 286 RELLLWMVEDASCLR 300 RELL ++ AS LR Sbjct: 345 RELLERILRTASVLR 359 >gi|256840245|ref|ZP_05545753.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13] gi|256737517|gb|EEU50843.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13] Length = 314 Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146 +S+DK++ + +++ G S L IS P +KP++G +SL I + Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 ++I L + H D L+I++++DG E+ V D Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206 >gi|51574082|gb|AAU07975.1| VanB [Enterococcus faecium] Length = 121 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + + G+ V ++++ ++ P +KP + GSS G+ + + L+ + Sbjct: 3 LTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEA 60 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD 184 + + ++LIEQ + G E+ C VMG+ Sbjct: 61 AGQYDGKILIEQAISGCEVGCAVMGN 86 >gi|218187207|gb|EEC69634.1| hypothetical protein OsI_39029 [Oryza sativa Indica Group] Length = 740 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 25/189 (13%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK ++ + GVP+ P ++ + I P +IKP GG G+ ++++ Sbjct: 152 DKSASKWIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + +L + ++ + G + LL+E+Y+ + + GD +V + Y Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262 Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 E + SL H PA + + A A +A+G +F+ D LS + Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321 Query: 257 VFWLEINVQ 265 +++E+N + Sbjct: 322 FYFMEMNTR 330 >gi|239941426|ref|ZP_04693363.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces roseosporus NRRL 15998] gi|239987891|ref|ZP_04708555.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces roseosporus NRRL 11379] Length = 652 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V++ GVPV P S L + ++ I P ++KP GG G+ Sbjct: 112 AIALMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGGGGKGM 171 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ + ++ + D LL+E+++D Sbjct: 172 RLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 207 >gi|50294352|ref|XP_449587.1| hypothetical protein [Candida glabrata CBS 138] gi|49528901|emb|CAG62563.1| unnamed protein product [Candida glabrata] Length = 1834 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 18/184 (9%) Query: 93 KMRSKQVVSSCGVPVCP-SILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 K +++V S GVP+ P S LV FT+ I P ++K GG +G+ + + Sbjct: 744 KHSAREVAKSAGVPLVPGSPLVKNADEAFTIAKN--IGYPVMVKSTAGGGGIGLQKVDNE 801 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202 Q + Q SS+ + +E+++D + +MGD + Sbjct: 802 QDMRKAFETVKHQGSSYFGDSGVFMEKFIDNARHVEVQIMGDGKGKTLALGERDCSLQRR 861 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 K LP + + +RL A+L + RG +F++D + ++LE Sbjct: 862 NQKVIEETPAPNLPRETRQKMLTAAERLGAYLNY-----RGAGTVEFIYDEQRDQFYFLE 916 Query: 262 INVQ 265 +N + Sbjct: 917 VNTR 920 >gi|325964659|ref|YP_004242565.1| phosphoribosylamine--glycine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323470746|gb|ADX74431.1| phosphoribosylamine--glycine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 444 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 27/242 (11%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134 IP A+ L K +K++++ GVP +++ + L PYV+K Sbjct: 95 IPVFGPSKAAAQLEASKAFAKEIMAEAGVPTAMAMVATSAEEAASALDTFGAPYVVKDDG 154 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 + G++V K D++ L QS ++ G ++IE+++DG E++ V+ D V Sbjct: 155 LAAGKGVVVTK-DRAEALAHAQSC-FDAGGSVVIEEFLDGPEVSLFVLCDGHNTVA--LS 210 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSDF 248 P DF +T + A PL+ E + R+A + RG Sbjct: 211 PAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMARRGTPFVGV 269 Query: 249 LFDPL---SRKVFWLEINVQPG-----------MTPVSIFPEMAAYAGYSFRELLLWMVE 294 LF L SR +E NV+ G TP+ AA E L W E Sbjct: 270 LFVGLALTSRGTRVIEFNVRFGDPETQAVLARLKTPLGSLLMAAAKGELDKAEELRWAKE 329 Query: 295 DA 296 A Sbjct: 330 TA 331 >gi|159898544|ref|YP_001544791.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159891583|gb|ABX04663.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 407 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 15/174 (8%) Query: 60 GNFGE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 G F E + + L++PY S + D MR QV+ + P+I + T Sbjct: 75 GGFNEVTQHIAADVAAALKLPYHSSATIHYTRQKDAMR--QVLREANLD--PTIAQSVET 130 Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P V+KP G +S+G+ +I+ I + G +L+E+Y+ Sbjct: 131 ADDIKVFGERYGYPLVLKPRDGRASMGVSIIRSAAEIATAQAWFEAGAAGHAMLVEEYLS 190 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 G E + + K ++ +S+ + H LPA +P E+ Sbjct: 191 GEEYSVEAFSEYGQHHIICVTQK-----FKDPQTSVETGHCLPAPLPQATVAEI 239 >gi|167038198|ref|YP_001665776.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039093|ref|YP_001662078.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Thermoanaerobacter sp. X514] gi|256750947|ref|ZP_05491831.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300913318|ref|ZP_07130635.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter sp. X561] gi|307723668|ref|YP_003903419.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter sp. X513] gi|320116608|ref|YP_004186767.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853333|gb|ABY91742.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter sp. X514] gi|166857032|gb|ABY95440.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750282|gb|EEU63302.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300890003|gb|EFK85148.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter sp. X561] gi|307580729|gb|ADN54128.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter sp. X513] gi|319929699|gb|ADV80384.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 386 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 19/179 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK++ KQV+ +PV V F + P++ K KGG +V+ KD++ Sbjct: 109 DKLKQKQVLKGANLPVPRFEKVENFEVSFFEKFGFPFIQKATKGGYDGRGVVVIKDKNDL 168 Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 +L+ S LIE++VD G EL V + ++ V + F + +++ Sbjct: 169 DKMLRVDS-------LIEEFVDMGKELAVMVARNLQGEIKCYPVVEMVFD----ESANIL 217 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + PA+I +I + V+ +A A +A IG GI +F +K+ EI +P Sbjct: 218 DLLIAPARIEKEIEENVKEIAIKAVEALDGIGIFGIE----MFLTKDKKILINEIAPRP 272 >gi|293604151|ref|ZP_06686559.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553] gi|292817376|gb|EFF76449.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553] Length = 871 Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + GN + G A + + +A +S DK +K+++S+CGVPV LV Sbjct: 182 IRLFEGNLVQFGYGSAQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVR 241 Query: 115 RF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P V+KP G G+ + + + + + G +++E++V Sbjct: 242 SEDDAWEAAEDIGLPVVVKPYDGNHGRGVFTNLTTREEVVSAYRVAV-DEGSGVIVERFV 300 Query: 173 DGIELTCGVMGD 184 G E V+G+ Sbjct: 301 LGNEHRLLVVGN 312 >gi|90408131|ref|ZP_01216300.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyltransferase subunit alpha/carboxyl transferase subunit [Psychromonas sp. CNPT3] gi|90310743|gb|EAS38859.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyltransferase subunit alpha/carboxyl transferase subunit [Psychromonas sp. CNPT3] Length = 1520 Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 16/192 (8%) Query: 85 LASALSM-DKMRSKQVVSSCGVPVCPS---ILVN-RFTMDSQHLISPPYVIKPLKGGSSL 139 + S L+M +K + + GVPV P IL +D + I P ++K + GG Sbjct: 1054 MDSMLTMGNKSNAIKTAQDHGVPVVPGSHGILTGAEQALDIANGIGYPVLLKAVNGGGGK 1113 Query: 140 GIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIA 193 GI+VI+K + + Q S++ +GD L +E+Y+ + + ++ D + + Sbjct: 1114 GILVIEKAEDMFTGFAQVSAEARSAFGNGD-LYLEKYITSLRHIEVQLLRDKQGNTRVLG 1172 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + K +++ +LP K+ + LA +A+ G +F++D Sbjct: 1173 IRDCSVQRNNQKVVEESASTMLPKKLEELAMTYTESLA----EAVDYMGAGTVEFIYDLD 1228 Query: 254 SRKVFWLEINVQ 265 ++++E+N + Sbjct: 1229 EDAIYFMEMNTR 1240 >gi|219870520|ref|YP_002474895.1| ribosomal protein S6 modification protein, glutamic acid ligase [Haemophilus parasuis SH0165] gi|219690724|gb|ACL31947.1| ribosomal protein S6 modification protein, glutamic acid ligase [Haemophilus parasuis SH0165] Length = 294 Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 17/187 (9%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIV 143 A AL+ DK +S Q +++CG+PV ++L+ ++ L P VIK L G +G+++ Sbjct: 100 AFALARDKWQSLQRLAACGIPVPDTLLMGELYSVAEGLSQSGLPAVIKTLSGSQGVGVML 159 Query: 144 IKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + S L+ L+S+ Q I + G ++ V+G+ + E +F + Sbjct: 160 AESYSSALSLLETLKSAKVPSLLQTFIAE-AKGQDIRAFVIGEQVVATMERTGASGEFRA 218 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + + + + A+ Q++A A +AIG ++ D + + + LE Sbjct: 219 NIHRGGTAQAIQLSDAE---------QKIAVQAAKAIGL-DVAGVDLIRS--QQGIMVLE 266 Query: 262 INVQPGM 268 +N PG+ Sbjct: 267 VNASPGL 273 >gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] Length = 877 Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++S DK +K ++ SCGVPV LV D+ I P V+KP G G+ Sbjct: 212 IAESISRDKDLTKSLLESCGVPVPEGRLVESPEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ +++ ++ + + G +++E+++ G E V+G Sbjct: 272 TNLMTREE---VETAYGVAIDEGSGVIVERFIPGNEHRLLVVG 311 >gi|72163412|ref|YP_291069.1| phosphoribosylamine--glycine ligase [Thermobifida fusca YX] gi|71917144|gb|AAZ57046.1| phosphoribosylamine--glycine ligase [Thermobifida fusca YX] Length = 424 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV 143 A+ + K +K+V+++ GVP + + + SQ L PPYV+K + G++V Sbjct: 96 AARIEGSKAFAKEVMAAAGVPTAEARVCRSASQVSQALDLFGPPYVVKDDGLAAGKGVVV 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 + D+++ Q+ +++IE+Y+DG E++ + D V + P DF Sbjct: 156 TE-DRAVAERHAQACG-----RVVIEEYLDGPEVSLFALSDGRNAVPLL--PAQDF 203 >gi|330998095|ref|ZP_08321923.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella xylaniphila YIT 11841] gi|329569184|gb|EGG50975.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella xylaniphila YIT 11841] Length = 503 Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 24/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147 DK+ ++Q + + GVPV P D I P ++K GG G+ +I + Sbjct: 115 DKIAARQRMMAAGVPVVPGTAEPLKDADEAVRICKEIGFPVMLKASMGGGGKGMRLIHSE 174 Query: 148 QSIP--LDLLQSSSWNH--GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200 + D +S S + D + +E++V+ IE ++GDA +V + + Sbjct: 175 DEVKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQ--ILGDAHGNVVHL-------F 225 Query: 201 SYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E N V + P ++ +E+ A A +A+ RG +FL D R Sbjct: 226 DRECSVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHF 284 Query: 258 FWLEINVQ 265 ++LE+N + Sbjct: 285 YFLEMNTR 292 >gi|120435282|ref|YP_860968.1| hypothetical protein GFO_0927 [Gramella forsetii KT0803] gi|117577432|emb|CAL65901.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 358 Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK R+ Q++ +P+ + + ++ + + + P V KP++G S G+ V + + + Sbjct: 119 DKWRTNQLLKEQKLPIPRAKIFSKKNLKNNSFDFTFPIVTKPIRGRGSQGVHVAQNQKEL 178 Query: 151 PLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVM 182 L+ S +G ++ IE+Y+ G E+T VM Sbjct: 179 -FQLINELIDSDKYGKEVYIEEYLSGQEITITVM 211 >gi|315043352|ref|XP_003171052.1| hypothetical protein MGYG_07050 [Arthroderma gypseum CBS 118893] gi|311344841|gb|EFR04044.1| hypothetical protein MGYG_07050 [Arthroderma gypseum CBS 118893] Length = 671 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 10/122 (8%) Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 F + S+H ++ P ++KP G SS G+ + +++ L + HG + +IE Y G Sbjct: 353 FGIASKHDLTYPLIVKPCDGWSSEGVSRVDSPEALALAIKSIDVSRHGTEFVIEPYCSGP 412 Query: 176 ELTCG-VMGDASLDVTEIA--VPKS-DFYSYELK----YSSLNSTHVLPAKIPLDIYKEV 227 E ++ D + +EI +PKS D S + + LN+ V P+ +P E+ Sbjct: 413 EFDANFILLDGEVLFSEICDDLPKSADINSSSERMITNFHELNT--VYPSALPSHEKNEI 470 Query: 228 QR 229 ++ Sbjct: 471 RQ 472 >gi|295666554|ref|XP_002793827.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides brasiliensis Pb01] gi|226277480|gb|EEH33046.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides brasiliensis Pb01] Length = 726 Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P MD I P +IK +KGG G+ + Sbjct: 155 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 214 Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ +S + N D +L+E+Y+ + V D + + Sbjct: 215 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 274 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP D++ + + A A+G G +F+FD + + F++E+ Sbjct: 275 HQKILEESPAPHLPEATRKDLWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 330 Query: 263 NVQ 265 N + Sbjct: 331 NTR 333 >gi|169350047|ref|ZP_02866985.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552] gi|169293260|gb|EDS75393.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552] Length = 413 Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust. Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 24/196 (12%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLG 140 G S L DK+ ++ + P LV+ ++ + P +IKP +S G Sbjct: 98 GYNISCLFTDKVLMRKKCKELDLNPIPYALVHNLYDAIEFYDTLGAPAIIKPADSQASKG 157 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIA----VP 195 + I Q + + ++ ++ +++IE++++G EL ++ D + V I Sbjct: 158 VHKITCRQDMIMYFKEAMDYSRNGKVIIEKFINGFELLVDSLIVDGEIKVLTIGEYAPFA 217 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS----DFLFD 251 K D +S + + P+K P D+ ++++ +Q I G++ S ++L+D Sbjct: 218 KKDVFS--------SHKTIFPSKCPKDVK---EKVSTFNNQIIKKFGLNNSRTHAEYLYD 266 Query: 252 PLSRKVFWLEINVQPG 267 K + +EI + G Sbjct: 267 --GEKCYLVEIAARGG 280 >gi|297843108|ref|XP_002889435.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp. lyrata] gi|297335277|gb|EFH65694.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp. lyrata] Length = 734 Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust. Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 23/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P + +D I P +IKP GG G+ +++ + Sbjct: 151 DKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSE 210 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + L + ++ + G + +L+E+Y+ + + GD +V + Y Sbjct: 211 KDFADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNV---------LHLY 261 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E S + + P E R A A +A+G +F+ D S + Sbjct: 262 ERDCSVQRRHQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQF 321 Query: 258 FWLEINVQ 265 +++E+N + Sbjct: 322 YFMEMNTR 329 >gi|154285674|ref|XP_001543632.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1] gi|150407273|gb|EDN02814.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1] Length = 722 Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + +M+ I P +IK +KGG G+ + Sbjct: 154 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 213 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 214 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 273 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 274 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 329 Query: 263 NVQ 265 N + Sbjct: 330 NTR 332 >gi|291444869|ref|ZP_06584259.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces roseosporus NRRL 15998] gi|291347816|gb|EFE74720.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces roseosporus NRRL 15998] Length = 674 Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V++ GVPV P S L + ++ I P ++KP GG G+ Sbjct: 134 AIALMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGGGGKGM 193 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++ + ++ + D LL+E+++D Sbjct: 194 RLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 229 >gi|309791144|ref|ZP_07685677.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris trichoides DG6] gi|308226842|gb|EFO80537.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris trichoides DG6] Length = 509 Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 23/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVI 144 DK+R+K++ VP P I T Q ++ P +IK GG G++ I Sbjct: 143 DKIRAKEIAKQSNVPTVPGI--ENVTSAEQIIEWMQKERVAFPIMIKAAAGGGGKGMVKI 200 Query: 145 KKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199 I L Q+ S D +L+E+Y++ G + ++ D V + Sbjct: 201 DSTDQIAAGLAQARSEAKKSFKDDTVLVEKYIEHGRHIEVQIVADEYQHVVHL------- 253 Query: 200 YSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 Y E N + P+ + D+ +E+ A + IG +F+F+P ++ Sbjct: 254 YDRECTLQRRNQKIIEEAPSTLESDLRQEICVTAARLMRRIGYTSAGTVEFIFEPSTQSF 313 Query: 258 FWLEINVQ 265 ++LE+N + Sbjct: 314 YFLEVNTR 321 >gi|116671948|ref|YP_832881.1| phosphoribosylamine--glycine ligase [Arthrobacter sp. FB24] gi|116612057|gb|ABK04781.1| phosphoribosylamine--glycine ligase [Arthrobacter sp. FB24] Length = 446 Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 18/203 (8%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLK 134 IP A+ L K +KQV++ GVP + + + D+ PYV+K Sbjct: 95 IPVFGPSKAAAQLEASKAFAKQVMAEAGVPTAMARVASTAEEAADALDTFGAPYVVKDDG 154 Query: 135 GGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + G++V +D+++ S ++ G ++IE+++DG E++ V+ D V Sbjct: 155 LAAGKGVVVTNNRDEAL---AHAQSCFDAGGSVVIEEFLDGPEVSVFVLCDGRNTVA--L 209 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSD 247 P DF +T + A PL+ E + R+A + RG Sbjct: 210 SPAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMAHRGTPFVG 268 Query: 248 FLFDPL---SRKVFWLEINVQPG 267 LF L SR +E NV+ G Sbjct: 269 VLFVGLALTSRGTRVIEFNVRFG 291 >gi|221632246|ref|YP_002521467.1| carbamoyl-phosphate synthase large subunit [Thermomicrobium roseum DSM 5159] gi|254813666|sp|B9KXM5|CARB_THERP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|221156776|gb|ACM05903.1| carbamoyl-phosphate synthase, large subunit [Thermomicrobium roseum DSM 5159] Length = 1078 Score = 38.9 bits (89), Expect = 0.99, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 13/186 (6%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKP--LKGGSSLGIIVI 144 L+ D+ R ++ + G+P P V +++ I P +++P + GG ++ V+ Sbjct: 669 LAEDRRRFERFLHELGIPQPPGAGVTTLEEALETAERIGYPVLVRPSYVLGGRAME--VV 726 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + L S ++ G +LI++Y+DGIEL DA D E+ VP + Sbjct: 727 YRREHLEQYLATSGAFASGRPVLIDKYLDGIELEV----DALCDGHEVLVPGIMQHIERA 782 Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 S +S V PA ++P + R A+ RG+ F+ V+ LE+N Sbjct: 783 GVHSGDSFAVYPAVELPSVHVDTLVRYTTEIALALAARGLINIQFVLH--QGVVYVLEVN 840 Query: 264 VQPGMT 269 + T Sbjct: 841 PRASRT 846 >gi|76881227|gb|ABA56282.1| cyanophycin synthetase [Nostoc ellipsosporum] gi|157092715|gb|ABV22527.1| cyanophycin synthetase [synthetic construct] gi|157092741|gb|ABV22544.1| cyanophycin synthetase [Nostoc ellipsosporum NE1] Length = 901 Score = 38.9 bits (89), Expect = 0.99, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|89068690|ref|ZP_01156076.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516] gi|89045653|gb|EAR51715.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516] Length = 452 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 24/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147 DK R+++ + GVPV P ++++ I+ P +IK GG GI VI+ + Sbjct: 118 DKARARETAIAAGVPVTPGSDGRIESVEAAARIAGELGYPVMIKAAAGGGGRGIRVIESE 177 Query: 148 QSIPLDLLQSSSWNH---GDQ-LLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202 + + + S GD L +E++VD + ++GD V +++ Sbjct: 178 ADLAKQMPAAQSEAEAAFGDGGLYMERFVDKARHVEVQILGDGDRAV----------HAW 227 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-----QAIGCRGISRSDFLFDPLSRKV 257 E + S + + P + +R A A +++G RG ++LFD R+ Sbjct: 228 ERECSLQRRRQKVWEEAPAACLSQEEREALCASAVRLAESVGYRGAGTLEYLFDEARREF 287 Query: 258 FWLEINVQ 265 +++E+N + Sbjct: 288 YFIEMNTR 295 >gi|84501841|ref|ZP_00999999.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola batsensis HTCC2597] gi|84389836|gb|EAQ02470.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola batsensis HTCC2597] Length = 673 Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 15/189 (7%) Query: 88 ALSM--DKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A+SM K+ +K + GVPV P + ++ + P+++K GG G+ Sbjct: 114 AISMMGSKIEAKAAAEAAGVPVLPGYRGEDQSDARLLEEVEALGSPFLVKASAGGGGRGM 173 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196 ++ P + + + G + +E+Y + V+GD V + Sbjct: 174 RLVTDLGEAPEAIASARAEAQGAFGDPAVFLERYAPRARHVEVQVLGDTHGTVLHLGDRD 233 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 K LP + D+ RLA QAIG R ++L+DP + Sbjct: 234 CSLQRNHQKLIEEAPAADLPEAVRDDMRAAAVRLA----QAIGYRSAGTVEYLYDPARGE 289 Query: 257 VFWLEINVQ 265 F+LE+N + Sbjct: 290 YFFLEMNTR 298 >gi|317047518|ref|YP_004115166.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b] gi|316949135|gb|ADU68610.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b] Length = 300 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 22/191 (11%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140 +A + DK+RS Q+++ G+ + P D+ LI+ P V+K ++G +G Sbjct: 92 VAITRARDKLRSLQLLAREGIDM-PVTGFASSPDDTDDLITMVGGAPLVVKLVEGTQGIG 150 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197 +++ + Q+ + N +L+++++ G ++ C V+GD + E A + Sbjct: 151 VVLAETRQAAESVIDAFRGLNA--HILVQEFIKEAQGRDIRCLVIGDEVVAAIERAAKEG 208 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DF S + H P+ I + + +A A +G ++ D L +R Sbjct: 209 DFRS---------NLHRGGKAYPVRITDQEREIAVKAASTLGLE-VAGVDILR--ANRGP 256 Query: 258 FWLEINVQPGM 268 +E+N PG+ Sbjct: 257 LVMEVNASPGL 267 >gi|182438551|ref|YP_001826270.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467067|dbj|BAG21587.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 652 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A+A+S+ DK+R+K+ V++ GVPV P S L + ++ I P ++KP GG Sbjct: 111 GPPAAAISLMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGG 170 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 G+ +++ + ++ + D LL+E+++D Sbjct: 171 GGKGMRLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 211 >gi|119478298|ref|ZP_01618329.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain [marine gamma proteobacterium HTCC2143] gi|119448638|gb|EAW29883.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain [marine gamma proteobacterium HTCC2143] Length = 674 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 32/276 (11%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQA 70 V L+ C A E + S +++DR + +L + +H +G E+ + Sbjct: 63 VQLADEAVCLGAPEASD---SYLNIDR-----IIRSAKELGVDAIHPGYGFLAENAAMAD 114 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126 E +I + L+ K ++Q+V S +P P + NR S ++ Sbjct: 115 ACERNDIVFIGPTALSMKAVASKQHARQLVDSLSLPTIPGL--NRLVSYSDEFVAQCEAI 172 Query: 127 --PYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQ-LLIEQYV-DGIELTC 179 P ++K GG +G+ +++ Q+ + + S GD +++E+Y+ + L Sbjct: 173 GFPVLLKATAGGGGVGMRIVEHGDDLQAAFEAVSRESQQAFGDGGIIVEKYLANARHLEV 232 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D + K + +LPA I + +A + I Sbjct: 233 QVLADHYGHCVHLHERDCSIQRRRQKIVEESPARLLPAGIKQSLCDTAVAIA----KHIN 288 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN----VQPGMTPV 271 RG +FL+ P ++ ++LE+N V+ G+T + Sbjct: 289 YRGAGTVEFLYSPEHQQFYFLEMNTRLQVEHGVTEL 324 >gi|89900109|ref|YP_522580.1| cyanophycin synthetase [Rhodoferax ferrireducens T118] gi|89344846|gb|ABD69049.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118] Length = 722 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++ DK +K ++ SCGVPV +VN + ++ I P +KP G G+ Sbjct: 212 IAEEIASDKDLTKSLLQSCGVPVPQGQVVNSAQEAWEAAQDIGLPVALKPYDGNHGRGVS 271 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + K+Q + G +++EQ++ G E V+G Sbjct: 272 LDLKNQKDIEAAFLLAQRKGGGSVIVEQFIAGNEHRLLVVG 312 >gi|75908035|ref|YP_322331.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413] gi|8134380|sp|O86109|CPHA_ANAVT RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin synthase gi|3393028|emb|CAA06440.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413] gi|75701760|gb|ABA21436.1| Cyanophycin synthetase [Anabaena variabilis ATCC 29413] Length = 901 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGS 137 +GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|298490446|ref|YP_003720623.1| cyanophycin synthetase ['Nostoc azollae' 0708] gi|298232364|gb|ADI63500.1| cyanophycin synthetase ['Nostoc azollae' 0708] Length = 900 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGG 136 ++GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 208 NTGILGVELACDKEATKRILAANGVPVPRGTVIN-FLDDLEESIEYVGGYPIVIKPLDGN 266 Query: 137 SSLGIIV 143 GI + Sbjct: 267 HGRGITI 273 >gi|42057|emb|CAA36869.1| ddl protein (partial) (AA 1-41) [Escherichia coli] Length = 41 Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 25/37 (67%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 +AVL+GG S+EREVSL+SG A + L + G +D Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD 41 >gi|116669947|ref|YP_830880.1| carbamoyl-phosphate synthase L chain, ATP-binding [Arthrobacter sp. FB24] gi|116610056|gb|ABK02780.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Arthrobacter sp. FB24] Length = 752 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPP 127 LE I + G+ + + DK+RSK V+ GVPV P I + + +++ + P Sbjct: 119 LEKAGITFIGPGVESLNVMGDKIRSKNHVAGYGVPVVPGIAEPGMTDAQLIEAAAGVGFP 178 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYV 172 +IKP GG G+ ++++ + L ++S D L +E+ V Sbjct: 179 LLIKPSAGGGGKGMHIVERPDELEATLATARRVAASAFGDDTLFLERLV 227 >gi|258577213|ref|XP_002542788.1| predicted protein [Uncinocarpus reesii 1704] gi|237903054|gb|EEP77455.1| predicted protein [Uncinocarpus reesii 1704] Length = 666 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + P +IKP G S G+ + + + + HG++ +IE+Y +G E+ Sbjct: 360 EHNLEFPLIIKPTNGFLSEGVFRAENLSQLKTGVQAIHTDRHGNEFVIEKYCEGPEVDAN 419 Query: 181 -VMGDASLDVTEIA--VPKS-DFYSYELKYSSLNSTHVLPAKIP---LDIYKE 226 V+ D L + E++ PKS D + + +VLP+K+P LD+ K+ Sbjct: 420 LVLCDGELILFEVSDDFPKSADANGRGNAKTFIELANVLPSKLPKSELDMLKD 472 >gi|241667649|ref|ZP_04755227.1| phosphoribosylglycinamide formyltransferase 2 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876194|ref|ZP_05248904.1| phosphoribosylglycinamide formyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842215|gb|EET20629.1| phosphoribosylglycinamide formyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 385 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 86 ASALSMDKMRSKQVVSS-CGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 A+ L+MD+ + + ++ G+ N + +D+ +I P+VIKP+ S G Sbjct: 100 ATKLTMDRQGIRSLAANELGLATSKFAFANNQKEYLDAVEIIGLPFVIKPVMSSSGKGQS 159 Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVD 173 ++K+ + D QS S H +++EQ++D Sbjct: 160 IVKERSEVQKAWDYAQSGSRGHAKGVIVEQFID 192 >gi|282896417|ref|ZP_06304438.1| Cyanophycin synthetase [Raphidiopsis brookii D9] gi|281198705|gb|EFA73585.1| Cyanophycin synthetase [Raphidiopsis brookii D9] Length = 860 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136 ++GIL L+ DK +K+++++ GVPV ++N F D + I P VIKPL G Sbjct: 184 NTGILGVELACDKEATKRILANSGVPVPKGTVIN-FLDDLEGSIEYVGGYPIVIKPLDGN 242 Query: 137 SSLGIIV 143 GI + Sbjct: 243 HGRGITI 249 >gi|221128621|ref|XP_002166024.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha polypeptide [Hydra magnipapillata] Length = 1281 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 18/184 (9%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 K SK + SCGVP+ +V + +I P ++K GG +G+ + + Sbjct: 189 KHISKNIARSCGVPIADYAIVESVESCLKESEIIGYPVILKLSSGGGGIGMYRCENKSDV 248 Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 PL L++ S G ++LIE+++ + ++GD + V +A E Sbjct: 249 LKYFPLVELKTKSVFKGSKILIEKFLSNCHHIEIQIIGDGNGHVISLA-------ERECS 301 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRL---AFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261 N + A P + Q++ A Q + R + +F+ D + F+LE Sbjct: 302 IQRRNQKLIEEAPSPFLSQETRQKMCSDAIKLAQFVSYRSVGTVEFVVDDSKPNEYFFLE 361 Query: 262 INVQ 265 +N + Sbjct: 362 VNTR 365 >gi|170079083|ref|YP_001735721.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. PCC 7002] gi|169886752|gb|ACB00466.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC 7002] Length = 1090 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 50/285 (17%) Query: 18 SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ DR+ V V+ +PD Sbjct: 29 SGTQSCKALREEGYEVVLVNSNPATIMTDPETADRTYVEPITPEIVAKVIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V LE + + + A ++ D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNTAVSLAKNGTLEKFNVELIGAKLEAIEMAEDRNLFKEAMARIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLI-----SPPYVIKP--LKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGD 164 + TM+ + S P +I+P GGS GI +++ + I L++S + Sbjct: 149 AS--TMEEAREVAIEIGSYPLIIRPAFTMGGSGGGIAYNQEEYEKICKSGLEASPVS--- 203 Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 Q+L+E+ + G E VM D + +V I ++ D + + +S V PA+ D Sbjct: 204 QILVEKSLLGWKEYELEVMRDLADNVVIICSIENID----PMGVHTGDSITVAPAQTLTD 259 Query: 223 IYKEVQRLAFLAHQAIGCRGI----SRSDFLFDPLSRKVFWLEIN 263 KE QRL + + I G+ S F +PL+ +V +E+N Sbjct: 260 --KEYQRLRDYSLKIIREIGVETGGSNIQFSVNPLNGEVIVIEMN 302 >gi|332880327|ref|ZP_08448005.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681772|gb|EGJ54691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 503 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 24/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147 DK+ ++Q + + GVPV P D I P ++K GG G+ +I + Sbjct: 115 DKIAARQRMMAAGVPVVPGTAEPLKDADEALRICKEIGFPVMLKASMGGGGKGMRLIHSE 174 Query: 148 QSIP--LDLLQSSSWNH--GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200 + D +S S + D + +E++V+ IE ++GDA +V + + Sbjct: 175 DEVKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQ--ILGDAYGNVVHL-------F 225 Query: 201 SYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E N V + P ++ +E+ A A +A+ RG +FL D R Sbjct: 226 DRECSVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHF 284 Query: 258 FWLEINVQ 265 ++LE+N + Sbjct: 285 YFLEMNTR 292 >gi|326779198|ref|ZP_08238463.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase [Streptomyces cf. griseus XylebKG-1] gi|326659531|gb|EGE44377.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase [Streptomyces cf. griseus XylebKG-1] Length = 648 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G A+A+S+ DK+R+K+ V++ GVPV P S L + ++ I P ++KP GG Sbjct: 107 GPPAAAISLMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGG 166 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 G+ +++ + ++ + D LL+E+++D Sbjct: 167 GGKGMRLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 207 >gi|68536636|ref|YP_251341.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411] gi|68264235|emb|CAI37723.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411] Length = 702 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ ++ V S VP P I L ++ +D+ + P +IKP GG G+ ++++ Sbjct: 124 DKITARATVESRDVPTVPGISRPNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEP 183 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + + L+ +++S D L +E +VD + ++ D+ +V + + Sbjct: 184 EKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRR 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261 K + +L K +E+ A A +A G G +F+ + F++E Sbjct: 244 HQKVIEEAPSALLDEK----TRQEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFME 299 Query: 262 INVQ 265 +N + Sbjct: 300 MNTR 303 >gi|260577837|ref|ZP_05845771.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC 43734] gi|258604064|gb|EEW17307.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC 43734] Length = 702 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ ++ V S VP P I L ++ +D+ + P +IKP GG G+ ++++ Sbjct: 124 DKITARATVESRDVPTVPGISRPNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEP 183 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + + L+ +++S D L +E +VD + ++ D+ +V + + Sbjct: 184 EKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRR 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261 K + +L K +E+ A A +A G G +F+ + F++E Sbjct: 244 HQKVIEEAPSALLDEK----TRQEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFME 299 Query: 262 INVQ 265 +N + Sbjct: 300 MNTR 303 >gi|225028541|ref|ZP_03717733.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353] gi|224954142|gb|EEG35351.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353] Length = 1154 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 14/181 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147 DK+ SK++ VP+ P + +D I+ P ++K GG G+ ++ ++ Sbjct: 124 DKISSKKIAIEANVPIIPGVDYAIKEVDEAKKIAAQVGYPVMLKASNGGGGRGMRIVNRE 183 Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202 + + + ++ + + D + IE+Y+ G + + ++GD +V + Sbjct: 184 EDLEKEFNEAKNESKKAFGDDMIFIEKYLKGPKHIEVQIVGDNYGNVVHLYDRDCSVQRR 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K +P + +I+ RLA + +G R +FL D +++E+ Sbjct: 244 HQKVVEYAPAFSIPETVRQEIFDASIRLA----KTVGYRNAGTLEFLVDA-DNHPYFIEM 298 Query: 263 N 263 N Sbjct: 299 N 299 >gi|167627087|ref|YP_001677587.1| phosphoribosylglycinamide formyltransferase 2 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597088|gb|ABZ87086.1| Phosphoribosylaminoimidazole carboxylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 385 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 86 ASALSMDKMRSKQVVSS-CGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 A+ L+MD+ + + ++ G+ N + +D+ +I P+VIKP+ S G Sbjct: 100 ATKLTMDRQGIRSLAANELGLATSKFAFANSQKEYLDAVEVIGLPFVIKPVMSSSGKGQS 159 Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVD 173 ++K+ + D QS S H +++EQ++D Sbjct: 160 IVKEHSEVQKAWDYAQSGSRGHAKGVIVEQFID 192 >gi|256372246|ref|YP_003110070.1| Phosphoribosylaminoimidazole carboxylase [Acidimicrobium ferrooxidans DSM 10331] gi|256008830|gb|ACU54397.1| Phosphoribosylaminoimidazole carboxylase [Acidimicrobium ferrooxidans DSM 10331] Length = 363 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 G +A A +K R + + ++ G+P P+ LV+R + L PPY++K ++GG G Sbjct: 91 GAVAMATGSNKERQRALFTTLGLPTIPAQLVDRDVGEVPTL-EPPYLLKAVRGGYD-GRG 148 Query: 143 VIKKDQSIPLDLLQSSSW 160 +++ D ++ +L ++ W Sbjct: 149 LLRVDATV--ELPRTGRW 164 >gi|315047656|ref|XP_003173203.1| hypothetical protein MGYG_05791 [Arthroderma gypseum CBS 118893] gi|311343589|gb|EFR02792.1| hypothetical protein MGYG_05791 [Arthroderma gypseum CBS 118893] Length = 687 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + P ++KP G S G+ ++ Q + + + HG +E+Y DG E+ Sbjct: 380 EHNLEFPLIMKPCTGYLSEGVSRVESLQQLEASIRAINVERHGAAFTLEKYCDGPEVDAN 439 Query: 181 -VMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 ++ D + EI+ PK + + K + ++LP+K+P D Sbjct: 440 FILCDGEVLFFEISDEFPKDADINGQGKTGFMERGNILPSKLPDD 484 >gi|124266215|ref|YP_001020219.1| cyanophycin synthetase [Methylibium petroleiphilum PM1] gi|124258990|gb|ABM93984.1| cyanophycin synthetase [Methylibium petroleiphilum PM1] Length = 755 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++ DK +K+++ SCGVPV +V+ ++ I P +KP G G+ Sbjct: 247 IAEGIAGDKDLTKRLLKSCGVPVPEGEVVDSVEAAWEAAQDIGLPVALKPTDGNHGRGVT 306 Query: 143 VIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDGIELTCGVMG 183 + D + D+ + ++ HG ++++E++V G E V+G Sbjct: 307 L---DLTSREDIEAAYAYADLHGSEVMVERHVPGQEHRLLVVG 346 >gi|206901331|ref|YP_002251484.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus thermophilum H-6-12] gi|206740434|gb|ACI19492.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus thermophilum H-6-12] Length = 1054 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 17/233 (7%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97 V ++ KPD L G G + ++ ILE +P + + + +++ D+ + Sbjct: 71 VERIIEKEKPDGIIATLGGQTGLNLAMELASAGILEKYGVPLLGASLESISMAEDRELFR 130 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK--GGSSLGIIVIKKDQSIPLD 153 + + G PV PS++V + L I P VI+P GG+ GI ++ + Sbjct: 131 KRMEEIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGI--VETFEEFEKA 188 Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNS 211 LL+S + Q L+E+ V G E+ VM D +V + ++ D + + +S Sbjct: 189 LLRSLRLSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVD----PMGIHTGDS 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 V P + DI ++ R A L A+ G + +P R+ + +E+N Sbjct: 245 IVVAPTQTLTDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVN 297 >gi|302878823|ref|YP_003847387.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2] gi|302581612|gb|ADL55623.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2] Length = 720 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSS 138 + +A ++S DK +K ++S+CGVPV +V+ ++ I P V+KP G Sbjct: 203 QTSAIAESISRDKDLTKTLLSACGVPVPEGRIVDNPADAWEAAEDIGLPVVVKPTDGNHG 262 Query: 139 LGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 G+ + + + + + + G ++++E+Y+ G E V+G Sbjct: 263 RGVSTELMTQEEVEAAFVLADA--QGSEVIVERYIRGNEHRLLVVG 306 >gi|255951707|ref|XP_002566620.1| Pc23g00610 [Penicillium chrysogenum Wisconsin 54-1255] gi|211904241|emb|CAP79555.1| Pc23g00610 [Penicillium chrysogenum Wisconsin 54-1255] Length = 671 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 19/127 (14%) Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVI 130 E L +P + S A +++ RS+ SC + L+++ T + ++ + PP+++ Sbjct: 301 ECLGLPTSPSESFAKSVNKHNTRSELSPDSCRLVSSLDGLISQITSNERNALPPGPPWIV 360 Query: 131 KPLKGGSSLGIIVIKKDQ---------------SIPLDLLQSSSWNHGDQLLIEQYVDGI 175 KP G SLG+ + Q S ++ + S W +LIE+Y DG Sbjct: 361 KPCFGWHSLGVHKVTTLQGLIEAVGKVSRQTAFSRTGEISKDSGWQ--TDVLIEEYCDGP 418 Query: 176 ELTCGVM 182 E+ C + Sbjct: 419 EVDCNFV 425 >gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843] gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843] Length = 877 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138 SGILA L+ DK +K ++ G+PV ++ + + + + P VIKPL G Sbjct: 209 SGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGNHG 268 Query: 139 LGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI I +K Q +S+ + +++E+Y G Sbjct: 269 RGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKG 305 >gi|313675247|ref|YP_004053243.1| SSU ribosomal protein s6p modification protein [Marivirga tractuosa DSM 4126] gi|312941945|gb|ADR21135.1| SSU ribosomal protein S6P modification protein [Marivirga tractuosa DSM 4126] Length = 303 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Query: 70 AILELLEIPYTHSGI--LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHL 123 A++ E+ T S + LA S DK+RS Q++S G+ + + NR +HL Sbjct: 75 AVVRQFEMMKTFSAVDSLAITRSRDKLRSLQILSRSGLAMPRTAFTNRSENAGEYILEHL 134 Query: 124 ISPPYVIKPLKGGSSLGIIV 143 P V+K L+G LG+++ Sbjct: 135 GKAPVVLKLLEGTQGLGVVL 154 >gi|20804025|emb|CAD31602.1| PUTATIVE LIGASE/CARBOXYLASE PROTEIN [Mesorhizobium loti R7A] Length = 411 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 18/236 (7%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++LS+ A L G + ++D D L+ + L+ + G G+D V A Sbjct: 31 ITLSADPAQYDYLAAEGIEAIRVDTDNLDALIHECSRLRATYEIAGITGFAGDDESVSAT 90 Query: 72 LELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPP 127 + L + G +++ DK +Q++S GVP+ L T I P Sbjct: 91 VGKLCRHFDLPGPNPASIERCCDKFTQRQLLSEAGVPIPAYRLAANATEVESCAAEIGLP 150 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 V+KP G S+G+ + + + + L +W ++L+E++ G VMG Sbjct: 151 VVLKPAVGSGSIGVRLCRSVEEVAEHTTYLLDGKHTWQSSPKILVEEFAQGPYYCTLVMG 210 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + L + +DF + L S + PA + D ++ + ++ +A+G Sbjct: 211 NEVL-----GIGAADFGPLP-HFVFLRS--IFPAPVTDDEHRRIADVSLSCLRALG 258 >gi|218437868|ref|YP_002376197.1| cyanophycin synthetase [Cyanothece sp. PCC 7424] gi|218170596|gb|ACK69329.1| cyanophycin synthetase [Cyanothece sp. PCC 7424] Length = 879 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGGS 137 HSGILA L+ DK +K ++ G+PV + V+ + + P V+KPL G Sbjct: 208 HSGILAVELACDKEGTKTILQDAGIPVPKGTVIQYVDELAEAIEDVGGFPIVVKPLDGNH 267 Query: 138 SLGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI + ++ DL ++S ++IE+Y G Sbjct: 268 GRGITIDVNSWEEAEEAYDLASTASKTR--SVIIERYYRG 305 >gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806] Length = 877 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138 SGILA L+ DK +K ++ G+PV ++ + + + + P VIKPL G Sbjct: 209 SGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGNHG 268 Query: 139 LGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GI I +K Q +S+ + +++E+Y G Sbjct: 269 RGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKG 305 >gi|187934420|ref|YP_001887426.1| carbamoyl-phosphate synthase large chain [Clostridium botulinum B str. Eklund 17B] gi|187722573|gb|ACD23794.1| phosphoribosylglycinamide synthetase family protein [Clostridium botulinum B str. Eklund 17B] Length = 383 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/185 (18%), Positives = 81/185 (43%), Gaps = 16/185 (8%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 +S +K ++V +P I + + T + +I P ++KP S GI + Q Sbjct: 100 ISTNKFEMRKVFYKNNIPSPKFIYITKDTNLEELIIDYPVIVKPTDRSGSRGINKVYNLQ 159 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ + + LIE++ +G E + + + K +F + K+++ Sbjct: 160 EMKYAVKEAIEVSFNKEALIEEFAEGREFSVEYISENG---------KHNFLAITEKFTT 210 Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262 + + H+ PA+I + ++++ + A A+ + G S S+ D + + +EI Sbjct: 211 GEPHFIETAHMQPARITREQEEKIKEIIPQALTALKIKNGASHSELKIDE-NNNIKIIEI 269 Query: 263 NVQPG 267 + G Sbjct: 270 GARMG 274 >gi|297194259|ref|ZP_06911657.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces pristinaespiralis ATCC 25486] gi|197720551|gb|EDY64459.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces pristinaespiralis ATCC 25486] Length = 663 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 87 SALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SA+S+ DK+R+K+ V + GVPV P S L + + I P ++KP GG G Sbjct: 110 SAISLMGDKIRAKETVKAAGVPVVPGSSGSGLSDEELAAAAREIGMPVLLKPSAGGGGKG 169 Query: 141 IIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 + + + + ++ ++ + D LL+E+++D Sbjct: 170 MRLTRVESALMDEIAAARREARASFGDDTLLVERWID 206 >gi|71908877|ref|YP_286464.1| cyanophycin synthetase [Dechloromonas aromatica RCB] gi|71848498|gb|AAZ47994.1| Cyanophycin synthetase [Dechloromonas aromatica RCB] Length = 751 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117 GN + G A+ + + +A +S DK +K+++SS GVPV V+ Sbjct: 188 GNLVQLGYGAAMRRIWTAETDQTSAIAETISRDKDLTKELISSVGVPVPEGREVDSADDA 247 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGI 175 ++ I P V+KP G G+ + D + ++ ++ + G +L+E+ + GI Sbjct: 248 WEAAEDIGVPVVVKPTDGNHGRGVFI---DLTTKEEVAKAYAIATEEGSGVLVERSIQGI 304 Query: 176 E 176 E Sbjct: 305 E 305 >gi|241763202|ref|ZP_04761261.1| cyanophycin synthetase [Acidovorax delafieldii 2AN] gi|241367701|gb|EER61967.1| cyanophycin synthetase [Acidovorax delafieldii 2AN] Length = 736 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 5/102 (4%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++ DK +K ++ SCGVP+ +VN ++ I P V+KP G G+ Sbjct: 213 IAEGIASDKDLTKSLLKSCGVPIPEGQVVNSPEEAWEAAQDIGLPVVVKPSDGNHGRGVT 272 Query: 143 V-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + + K + I + ++ G +++E+++ G E V+G Sbjct: 273 LDLHKKEDI--EAAYHVAYPEGSDVMVERFIPGDEHRLLVVG 312 >gi|171694463|ref|XP_001912156.1| hypothetical protein [Podospora anserina S mat+] gi|170947180|emb|CAP73985.1| unnamed protein product [Podospora anserina S mat+] Length = 745 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 19/175 (10%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 EDAG VDR + ++++ P L NF V + E L +P S + A Sbjct: 309 EDAGV------VDRIIQSIVSYPLPIHGVFTLSDNFFV--AVAQVAEALGLPT--SPVAA 358 Query: 87 SALSMDKMRSK-------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 S+DK RS+ Q V S+L + ++ + P ++KP KG SS Sbjct: 359 FETSVDKYRSRLLQNVPCQTARVHNVRELESLLASGGNQQAEFIPRFPLIVKPTKGWSSE 418 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASLDVTEIA 193 + + + +Q ++ HG +IE + DG E+ V+ D + +EIA Sbjct: 419 CVSKVNNLADL-ATAVQKATSRHGSAAVIEPFFDGPEMDVNFVLLDGEILFSEIA 472 >gi|333027644|ref|ZP_08455708.1| putative carboxylase [Streptomyces sp. Tu6071] gi|332747496|gb|EGJ77937.1| putative carboxylase [Streptomyces sp. Tu6071] Length = 854 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 14/137 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQS 149 DK ++++ + GVP S+ V +Q I P V+KP +S+G+I + ++ Sbjct: 549 DKGTTRRLFAEAGVPSARSVRVQSVHEAAQAAATIGYPVVLKPASHAASIGVIKASRPEA 608 Query: 150 IPLDLLQSSSWNHGDQ------LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + + + ++ G+Q +L+E+Y+DG E++ M A +L VT V + F Sbjct: 609 L-AEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAVTRKEVSFAPF 667 Query: 200 YSYELKYSSLNSTHVLP 216 + E+ ++ +LP Sbjct: 668 FE-EVGHTVERDDSLLP 683 >gi|221069121|ref|ZP_03545226.1| cyanophycin synthetase [Comamonas testosteroni KF-1] gi|220714144|gb|EED69512.1| cyanophycin synthetase [Comamonas testosteroni KF-1] Length = 748 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117 GN + G A + + +A ++ DK +K+++++CGVPV +V Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + K+ I + G +++E+++DG+E Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 328 HRLLVVGGKVVAATK 342 >gi|299529567|ref|ZP_07043004.1| cyanophycin synthetase [Comamonas testosteroni S44] gi|298722430|gb|EFI63350.1| cyanophycin synthetase [Comamonas testosteroni S44] Length = 748 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117 GN + G A + + +A ++ DK +K+++++CGVPV +V Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + K+ I + G +++E+++DG+E Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 328 HRLLVVGGKVVAATK 342 >gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08] Length = 1155 Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 G+ + + + GF + ++R+V + +P+L +LHG + G V A++ +P Sbjct: 970 GEEQSGQMHEIGFSLYTELLERAVKSLREGQEPELERPLLHGTEVDLG-VPALIPDDYLP 1028 Query: 79 YTHSGI-----LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 HS + +A+A S+++++ QV + P + N FT+ L + PY I + Sbjct: 1029 DVHSRLQLYKRIANAASVEELKELQVEMIDRFGLLPEPVKNLFTLTDLKLRATPYGITKI 1088 Query: 134 KGGSSLGIIVIKKDQSI-PLDLLQ 156 + G++ G I K+ I P+ L++ Sbjct: 1089 ELGAAGGRISFNKEPDIDPMHLIR 1112 >gi|319407302|emb|CBI80943.1| Biotin carboxylase [Bartonella sp. 1-1C] Length = 452 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 31/224 (13%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE I + + DK+ +K+ S G+PV P +I+ Sbjct: 82 YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDNAIVEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170 + + + I P +IK GG G+ V +Q + ++S+ + D + IE+ Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDSVYIEK 201 Query: 171 YVDG---IELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPL 221 Y++ IE+ ++GD + L + ++ + +E YS LN Sbjct: 202 YLEKPRHIEIQ--IIGDGAGNAIHLGERDCSLQRRHQKVWEEAYSPILNEAE-------- 251 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 K++ + A +G RG +FL++ + + +++E+N + Sbjct: 252 --RKKIGNIVANACAKLGYRGAGTVEFLYE--NGEFYFIEMNTR 291 >gi|217968162|ref|YP_002353668.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum DSM 6724] gi|217337261|gb|ACK43054.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum DSM 6724] Length = 1054 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 17/230 (7%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ KPD L G G + ++ ILE IP + + + +++ D+ ++ + Sbjct: 74 IIEKEKPDGIIATLGGQTGLNLAMELASIGILEKYGIPLLGASLESISMAEDRELFRKRM 133 Query: 101 SSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQ 156 G PV PS++V + L I P VI+P GG+ GI ++ + LL+ Sbjct: 134 EEIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGI--VESVEEFEKALLR 191 Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214 S + Q L+E+ V G E+ VM D +V + ++ D + + +S V Sbjct: 192 SLKLSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVD----PMGIHTGDSIVV 247 Query: 215 LPAKIPLDIYKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 P + DI ++ R A L A+ G + +P R+ + +E+N Sbjct: 248 APTQTLNDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVN 297 >gi|264676746|ref|YP_003276652.1| cyanophycin synthetase [Comamonas testosteroni CNB-2] gi|262207258|gb|ACY31356.1| cyanophycin synthetase [Comamonas testosteroni CNB-2] Length = 748 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117 GN + G A + + +A ++ DK +K+++++CGVPV +V Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP G + G+ + + K+ I + G +++E+++DG+E Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327 Query: 177 LTCGVMGDASLDVTE 191 V+G + T+ Sbjct: 328 HRLLVVGGKVVAATK 342 >gi|288920466|ref|ZP_06414774.1| phosphoribosylamine/glycine ligase [Frankia sp. EUN1f] gi|288348118|gb|EFC82387.1| phosphoribosylamine/glycine ligase [Frankia sp. EUN1f] Length = 421 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143 A+ L K +K+++ + GVP S + L PPYV+K G ++ + Sbjct: 96 AARLEGSKAFAKEIMRAAGVPTADSRDHTEISSALADLDTFGPPYVVK-YDGLAAGKGVT 154 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + D+ + ++ +++S + D++++E+Y+DG E++ Sbjct: 155 VTTDRDVAVEAVRASLRDTDDRVVLEEYLDGPEVS 189 >gi|86607545|ref|YP_476307.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556087|gb|ABD01044.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 431 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%) Query: 67 LVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----M 118 LVQ I++ + +P A+ L K+ +KQ++ G+P + + + Sbjct: 76 LVQGIVDAFQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTARATGFAELSAAVAYL 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 DSQ P VIK K G + G + + +++ + L+++ GDQ+LIE+++ G E+ Sbjct: 136 DSQSF---PVVIK--KDGLAAGKGVTVAQNREEAVQALEAALAKPGDQVLIEEFIPGQEV 190 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 + + D + V +P + Y + + +T + A P D Sbjct: 191 SVLALTDGQICVP---LPPAQDYKRLGEGDTGPNTGGMGAHAPAD 232 >gi|319408519|emb|CBI82172.1| Biotin carboxylase [Bartonella schoenbuchensis R1] Length = 448 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 22/224 (9%) Query: 56 NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109 + +H +G E+ ILE EI + + DK+ +K+ + G+P+ P Sbjct: 76 DAIHPGYGFLSENAKFADILEAHEITFIGPTSAHIRIMGDKIEAKKTAKNLGIPIVPGSD 135 Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWN--HGD 164 ++ + + I P +IK GG G+ V++ K+ S + +S + + D Sbjct: 136 GAVTDEKEALRIIDEIGYPVIIKASAGGGGRGMKVVRSEKELSTAFNTARSEARAAFNDD 195 Query: 165 QLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 + IE+Y++ IE+ V+GD + + I + + D S + ++ + PA L Sbjct: 196 AVYIEKYLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKVWEEAYSPALNEL 250 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + K++ + A +G RG +FL++ + + +++E+N + Sbjct: 251 E-RKKIGSIVANACAKLGYRGAGTIEFLYE--NGEFYFIEMNTR 291 >gi|302341652|ref|YP_003806181.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii DSM 2075] gi|301638265|gb|ADK83587.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii DSM 2075] Length = 340 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 40/278 (14%) Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQ---AILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L L+PD+ FN++ G ++ +LE L + YT +G L+ K+ +K+ + Sbjct: 54 ALEELRPDVVFNLVETPLGMARMIHLAPLLLERLRLRYTGAGARGMLLTSQKLLAKKAMR 113 Query: 102 SCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSI--PLD--LL 155 +P P R D SP Y++K + S+G+ D SI PL + Sbjct: 114 ESNLPT-PDWCGPR---DDGLPFSPLRRYIVKSVWEHGSVGL----DDHSIIKPLGRAAM 165 Query: 156 QSSSWNHGDQL----LIEQYVDGIELT----CGVMGDASLDVTEIAVP-----KSDFYSY 202 +++ G L E Y+DG E G G L EI K Y Sbjct: 166 RAAIAQRGKALGGDCFAEAYIDGREFNIAILAGSRGPEVLPPAEITFEGFQPGKPHIVGY 225 Query: 203 ELKY--SSLNSTHVLPAKI---PLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K+ S H P + P D + ++ ++ + G RG +R DF D R Sbjct: 226 RAKWVEDSHEYNHT-PRRFDFEPRDAELLARLKAMSLRCWRLFGLRGWARVDFRVDRKGR 284 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F LE+N P + + F A AG + +++W + Sbjct: 285 P-FILEVNANPCLADDAGFMAAARRAGLD-QTIVVWRI 320 >gi|271965644|ref|YP_003339840.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium roseum DSM 43021] gi|270508819|gb|ACZ87097.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium roseum DSM 43021] Length = 450 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 19/198 (9%) Query: 80 THSGILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPL 133 T G AS LS DK +++++ + G+PV P + T++ ++ P +IK Sbjct: 101 TFIGPSASLLSRLGDKAQAREIAQAAGLPVLPGSSRSLATLEQAKAVAGEIGYPVIIKAT 160 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GD-QLLIEQYVDGIE-LTCGVMGDASLD 188 GG G+ V++ + +P Q+ + GD +L +E +++ + V+GD + Sbjct: 161 AGGGGRGMTVVRDARDLPRAYAQARAGAQAAFGDPRLYLEMFLENARHIEVQVLGDGAGG 220 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V ++ + D + + T PA +P ++ + A A + + G + Sbjct: 221 VVQLG--ERDCSVQRRRQKLIEET---PAPGLPREMADRICAAAVHAAREVNYAGAGTYE 275 Query: 248 FLFDPLSRKVFWLEINVQ 265 FL D F++E+N + Sbjct: 276 FLVD--GDDFFFMEVNCR 291 >gi|146298802|ref|YP_001193393.1| phosphoribosylamine--glycine ligase [Flavobacterium johnsoniae UW101] gi|146153220|gb|ABQ04074.1| phosphoribosylamine--glycine ligase [Flavobacterium johnsoniae UW101] Length = 424 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 21/141 (14%) Query: 64 EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 ED LV+ + + L IP L + L K +K+ + +P + F Sbjct: 71 EDPLVKGVYDYFKNDDSLKHIPVIGPSKLGAQLEGSKEFAKEFLMKHNIPTAA---YDSF 127 Query: 117 TMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165 T ++ + PPYV+K + G+++I+ + +L + + + Sbjct: 128 TAETVEEGCKFLETLQPPYVLKADGLAAGKGVLIIQDLEEAKTELRNMLVHAKFGTASSK 187 Query: 166 LLIEQYVDGIELTCGVMGDAS 186 ++IE+++DGIEL+C V+ D Sbjct: 188 VVIEEFLDGIELSCFVLTDGK 208 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] gi|300074271|gb|ADJ63670.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1] Length = 732 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138 + +A +S DK +K ++ +CGVPV LV ++ I P V+KP Sbjct: 206 QTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVESPEDAWEAAQDIGLPVVVKPCDANHG 265 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 G+ I + ++ + G +L+E++V G+E ++G Sbjct: 266 RGVF-IDLNTREEIETAYKVALEEGSGVLVERFVPGLEHRLLIVG 309 >gi|163754704|ref|ZP_02161826.1| phosphoribosylamine--glycine ligase [Kordia algicida OT-1] gi|161325645|gb|EDP96972.1| phosphoribosylamine--glycine ligase [Kordia algicida OT-1] Length = 423 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 11/93 (11%) Query: 109 PSILVNRFTMDS-----QHL--ISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQS 157 P+ FT D+ Q L + PPYV+K + G+++I + S+ L+ + Sbjct: 120 PTAAYESFTKDTVEAGCQFLTTLKPPYVLKADGLAAGKGVLIIDDLQEAQNSLREMLVDA 179 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 + +++IE+++DGIEL+C V+ D VT Sbjct: 180 KFGDASTKVVIEEFLDGIELSCFVLTDGKNYVT 212 >gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16] gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16] Length = 877 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGII 142 + ++S DK +K ++ SCGVPV +V+ D+ I P V+KP G G+ Sbjct: 212 IGESISRDKDLTKSLLESCGVPVPEGRMVDSPADAWDAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ +++ ++ + + G+ +++E+++ G E V+G Sbjct: 272 TNLMTREE---VETAYGVAIDEGNGVIVERFIPGNEHRLLVVG 311 >gi|308049117|ref|YP_003912683.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM 9799] gi|307631307|gb|ADN75609.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM 9799] Length = 302 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGII 142 A AL DKM+S ++ GVP+ P+ ++ RF +D+ ++ P V+K G G++ Sbjct: 100 AIALCGDKMQSAIALAHQGVPM-PAAMLARFPVDTDEVVRKMGMPVVLKTRSGSQGTGVM 158 Query: 143 VIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYV 172 +++ + D++Q + N +++ ++YV Sbjct: 159 LMRNESQFK-DMMQLMGNVNPKAEMMFQRYV 188 >gi|295837391|ref|ZP_06824324.1| carboxylase [Streptomyces sp. SPB74] gi|295826511|gb|EDY43029.2| carboxylase [Streptomyces sp. SPB74] Length = 408 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 14/142 (9%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQS 149 DK ++++++ GVP SI V +Q I P V+KP +S+G+I + ++ Sbjct: 103 DKGTTRRLLAEAGVPSARSIRVQSAHEAAQAAATIGYPVVLKPASHAASIGVIKAARSEA 162 Query: 150 IPLDLLQSSSWNHGDQ------LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199 + + + ++ G+Q +L+E+Y+DG E++ M A +L VT V + F Sbjct: 163 L-AEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAVTRKEVAFAPF 221 Query: 200 YSYELKYSSLNSTHVLPAKIPL 221 + E+ ++ +LP P+ Sbjct: 222 FE-EVGHTVERDDPLLPLVSPV 242 >gi|320324143|gb|EFW80224.1| hypothetical protein PsgB076_13812 [Pseudomonas syringae pv. glycinea str. B076] gi|320328709|gb|EFW84709.1| hypothetical protein PsgRace4_17808 [Pseudomonas syringae pv. glycinea str. race 4] Length = 415 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%) Query: 87 SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +AL+ DK +Q ++ G+ P + N + H + P VIKPL G SS G+++ Sbjct: 104 AALTRDKYLMRQAFAAAGL-RSPGFCYIDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLA 162 Query: 145 KKDQSIP-----------LDLLQSSSWNHGDQLLIEQYVDGIEL 177 K + +P DL + + L++EQY+ G E Sbjct: 163 KTVEELPNLVNAVWDVQSKDLARFYDQDKAVGLVVEQYLPGKEF 206 >gi|225554499|gb|EEH02796.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Ajellomyces capsulatus G186AR] Length = 1280 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + +M+ I P +IK +KGG G+ + Sbjct: 713 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 772 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 773 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 832 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 833 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 888 Query: 263 NVQ 265 N + Sbjct: 889 NTR 891 >gi|163855460|ref|YP_001629758.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase [Bordetella petrii DSM 12804] gi|163259188|emb|CAP41488.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase [Bordetella petrii] Length = 671 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 24/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSI---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK R+K ++ + GVPV P N T+++ I P ++KP GG G+ +I + Sbjct: 115 DKARAKALMRAAGVPVVPGTDEASDNPATIEALARAIELPILLKPSAGGGGKGMQIITQY 174 Query: 148 QSIPLDLLQS------SSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFY 200 +P L++S SS+ G ++++E+Y++ + V GD +V + + Sbjct: 175 DDLP-GLIESAIRVARSSFGDG-RMIVERYIEEPRHIEVQVFGDGCGNVVHL-------F 225 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRL---AFLAHQAIGCRGISRSDFLFDPLSRKV 257 E + + A P + QRL A +++ R +F+ D Sbjct: 226 ERECSLQRRHQKVMEEAPAPHLPERARQRLLEAAVQGARSLDYRNAGTFEFIMD-RDFNC 284 Query: 258 FWLEINVQ 265 ++LE+N + Sbjct: 285 YFLEVNTR 292 >gi|92113366|ref|YP_573294.1| SSU ribosomal protein S6P modification protein [Chromohalobacter salexigens DSM 3043] gi|122990548|sp|Q1QY63|RIMK_CHRSD RecName: Full=Ribosomal protein S6 modification protein gi|91796456|gb|ABE58595.1| SSU ribosomal protein S6P modification protein [Chromohalobacter salexigens DSM 3043] Length = 302 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 28/189 (14%) Query: 90 SMDKMRSKQVVS--SCGVPVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 S DK+RS Q++S G+PV P + + TM + P VIK L+G +G++ Sbjct: 97 SRDKLRSLQLLSRKGLGLPVTGFAHSPDDIPDLITM----VKGAPLVIKLLEGTQGIGVV 152 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDF 199 + + +Q+ ++Q+ + +++++Y+ G ++ C V+GD + + + +F Sbjct: 153 LAETNQAAE-SVIQAFMGMKAN-IMVQEYIKEAKGADVRCLVIGDKVVAAMKRQAAEGEF 210 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S + + + + P E + A A +A+G R I+ D L + Sbjct: 211 RSNLHRGGTASVIRITP---------EERSTAIRAAKAMGLR-IAGVDLLRS--NHGPVI 258 Query: 260 LEINVQPGM 268 +E+N PG+ Sbjct: 259 MEVNSSPGL 267 >gi|332184864|gb|AEE27118.1| Phosphoribosylglycinamide formyltransferase 2 [Francisella cf. novicida 3523] Length = 386 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 86 ASALSMDKMRSKQVVS-SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGII 142 A+ L+MD+ + + + +P N +D+ I P+VIKP+ S G Sbjct: 100 ATKLTMDRQGIRALAADELNLPTSKFAFANNEQEYLDAIPSIEIPFVIKPIMSSSGKGQS 159 Query: 143 VIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++K KD D QS S H ++IEQ++D Sbjct: 160 IVKEPKDIKKAWDYAQSGSRGHAKGVIIEQFID 192 >gi|312183629|gb|ADQ42384.1| pyruvate carboxylase subunit A [Methanosaeta harundinacea] Length = 495 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 19/189 (10%) Query: 90 SMDKMRSK----QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 S+D+M SK ++ S GVP+ P I MD I P ++KP GG +G+ Sbjct: 109 SIDRMGSKIAARDIMKSAGVPIVPGSEGGISNPAEAMDLVEAIGYPVMLKPAAGGGGIGM 168 Query: 142 IVI--KKDQSIPLDLLQS--SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196 ++ +KD + LD +S S + + IE+Y+ + + ++ D+ ++ + Sbjct: 169 KIVWEEKDLAPALDSARSIARSAFSDETVYIEKYLTEPRHIEFQILADSKGKTIYVSDRE 228 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 S + ++ L P P ++ +E+ +A A +AI R +F++ + Sbjct: 229 C---SIQRRHQKLIEESPSPIMTP-ELREEMGSIAVRAAEAIDYRSAGTVEFMYS--KGE 282 Query: 257 VFWLEINVQ 265 ++LE+N + Sbjct: 283 YYFLEMNTR 291 >gi|158312073|ref|YP_001504581.1| phosphoribosylamine--glycine ligase [Frankia sp. EAN1pec] gi|158107478|gb|ABW09675.1| phosphoribosylamine--glycine ligase [Frankia sp. EAN1pec] Length = 439 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIV 143 A+ L K +K+++ + GVP S + L S PPYV+K G ++ + Sbjct: 96 AARLEGSKAFAKEIMRAAGVPTADSRDHTEISSALADLDSFGPPYVVK-YDGLAAGKGVT 154 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + D+ +D +++S D++++E+Y+DG E++ Sbjct: 155 VTTDRDAAVDAVRASLRGPDDRVVLEEYLDGPEVS 189 >gi|320100707|ref|YP_004176299.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Desulfurococcus mucosus DSM 2162] gi|319753059|gb|ADV64817.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Desulfurococcus mucosus DSM 2162] Length = 502 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 21/198 (10%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVI- 144 + DK K + VP P +V+ D + P V+KP +G GI V+ Sbjct: 106 FTRDKPAVKTLAEKLDVPTLPWSIVDD-DADLEEFARAHGYPLVLKPARGAWGRGIRVLW 164 Query: 145 -KKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYS 201 +KD ++ + +GD+ + +E Y+ +L V+GD + Y Sbjct: 165 SEKDAEQLKTAVKEAEKLYGDRRIYVEPYMGSAKLLEVQVIGDGEKVI--------HLYE 216 Query: 202 YE--LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E L+ L + P+K + ++ ++ A +A+ R + +FL+D SR +F Sbjct: 217 REASLQDDYLKTVIEAPSKTVSKELRDKLVGYAVAVGEALRLRNTATVEFLYDVRSRTLF 276 Query: 259 WLEINVQPGMTPVSIFPE 276 E+N PG++P + E Sbjct: 277 LNEVN--PGLSPEHVATE 292 >gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118] gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118] Length = 858 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 11/109 (10%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGS 137 +G +A A++ DK +K+++++ GVPV V+ T + + + P V+KP G Sbjct: 194 TGAIAEAIAQDKQLTKKLLAAAGVPVPLGREVD--TPEDAWMAACEVGLPVVVKPKSGNQ 251 Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 G+ V ++Q L +++ GD +L+E+Y+ G + V+G+ Sbjct: 252 GKGVTVNITSREQ---LTAAYAAAAEFGDDILVERYIPGNDFRLLVVGN 297 >gi|62083577|gb|AAX62510.1| D-alanine:D-lactate ligase [Staphylococcus epidermidis] Length = 88 Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS G+ + + L+ ++ + ++LIEQ + G E+ C VMG+ Sbjct: 12 PVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQAISGCEVGCAVMGN 67 >gi|254421594|ref|ZP_05035312.1| cyanophycin synthetase [Synechococcus sp. PCC 7335] gi|196189083|gb|EDX84047.1| cyanophycin synthetase [Synechococcus sp. PCC 7335] Length = 925 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 17/101 (16%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 +HS IL+ L+ DK +K+++ + G+PV +V +L P V+KPL G Sbjct: 207 SHSNILSVELACDKEATKRMLGNAGIPVPKGTVVYSLRELEESLDYLGGYPIVVKPLDGN 266 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--LIEQYVDGI 175 GI L SSW + L Q DG+ Sbjct: 267 HGRGIT------------LNISSWEQAEAAYDLARQVSDGV 295 >gi|30678473|ref|NP_849583.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana] gi|20455046|sp|Q42523|MCCA_ARATH RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Short=MCCase subunit alpha; AltName: Full=3-methylcrotonyl-CoA carboxylase 1; AltName: Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; Flags: Precursor gi|17979456|gb|AAL50065.1| At1g03090/F10O3_8 [Arabidopsis thaliana] gi|332189406|gb|AEE27527.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis thaliana] Length = 734 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 23/188 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P + +D I P +IKP GG G+ +++ Sbjct: 151 DKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSG 210 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 + L + ++ + G + +L+E+Y+ + + GD +V + Y Sbjct: 211 KDFADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHL---------Y 261 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E S + + P E R A A +A+G +F+ D S + Sbjct: 262 ERDCSVQRRHQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQF 321 Query: 258 FWLEINVQ 265 +++E+N + Sbjct: 322 YFMEMNTR 329 >gi|218245822|ref|YP_002371193.1| cyanophycin synthetase [Cyanothece sp. PCC 8801] gi|218166300|gb|ACK65037.1| cyanophycin synthetase [Cyanothece sp. PCC 8801] Length = 877 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 30/110 (27%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137 SGIL L+ DK +K ++ G+PV P +F D ++ I P VIKPL G Sbjct: 209 SGILGVELACDKEGTKTMLQDSGIPV-PKGTTIQFFEDLENAIEDVGGFPIVIKPLDGNH 267 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------------LLIEQYVDG 174 GI + +SW+H ++ ++IE+Y G Sbjct: 268 GRGITI------------DINSWDHAEEAYDFASKESKTRSVIIERYYKG 305 >gi|308067543|ref|YP_003869148.1| phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) [Paenibacillus polymyxa E681] gi|305856822|gb|ADM68610.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) [Paenibacillus polymyxa E681] Length = 391 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 14/159 (8%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSLGIIVIKK 146 + ++R K+ + + GVPV P ++ Q + + P V+K GG G +VI++ Sbjct: 110 TQHRLREKRSIEAAGVPVAPYREISSPADIVQAVAELGVPCVLKTAVGGYDGKGQVVIRQ 169 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDFYSYEL 204 + Q + G +L++EQ+ I C V+ S + A P ++ + Sbjct: 170 PEEATAAYEQLAGG--GVELVLEQF---IRFRCEISVIVARSTNGEAKAFPPAE----NI 220 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +++ T ++PA++P + +E ++LA +++G G+ Sbjct: 221 HVNNILHTSIVPARVPEPVQEEARKLALAVAESLGAVGL 259 >gi|121611887|ref|YP_999694.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2] gi|121556527|gb|ABM60676.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2] Length = 741 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++ DK +K +++SCG+P+ LV+ + I P V+KP G G+ Sbjct: 213 IAEGIASDKELTKGLLASCGLPIPEGRLVHSPEQAWQAAQDIGLPVVLKPSDGNHGRGVT 272 Query: 143 V---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + ++D L + G Q+++E+++ G E V+GD Sbjct: 273 LDLHSRQDIEAAYRLAEPE----GSQVMVERFIAGAEHRLLVVGD 313 >gi|154149224|ref|YP_001406712.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) [Campylobacter hominis ATCC BAA-381] gi|153805233|gb|ABS52240.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) [Campylobacter hominis ATCC BAA-381] Length = 337 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 17/192 (8%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISP---PYVIKPLKGGSSLG 140 ++ AL DK ++K + GVPV P S V + +++ L + P ++K GG G Sbjct: 1 MSMALMSDKSKAKSFMKRAGVPVIPGSDGVLKDVEEARKLANEMGYPVILKAAAGGGGRG 60 Query: 141 IIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194 + ++ K + + + + S++ +G + IE+Y+ + ++GD +V I V Sbjct: 61 MRLVTKGEDLEKNFWAAESEALSAFGNG-SMYIEKYITNPRHVEVQILGDEHGNV--IHV 117 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPL 253 + D S + ++ L PA I + +E + A A +AIG G +FL+D Sbjct: 118 GERDC-SMQRRHQKL--IEETPATILDEKTREKLHETAIAATKAIGYYGAGTFEFLYDQD 174 Query: 254 SRKVFWLEINVQ 265 S++ +++E+N + Sbjct: 175 SKEFYFIEMNTR 186 >gi|330883008|gb|EGH17157.1| hypothetical protein Pgy4_29620 [Pseudomonas syringae pv. glycinea str. race 4] Length = 316 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%) Query: 87 SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +AL+ DK +Q ++ G+ P + N + H + P VIKPL G SS G+++ Sbjct: 97 AALTRDKYLMRQAFAAAGL-RSPGFCYIDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLA 155 Query: 145 KKDQSIP-----------LDLLQSSSWNHGDQLLIEQYVDGIEL 177 K + +P DL + + L++EQY+ G E Sbjct: 156 KTVEELPNLVNAVWDVQSKDLARFYDQDKAVGLVVEQYLPGKEF 199 >gi|257095426|ref|YP_003169067.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047950|gb|ACV37138.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 723 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 16/177 (9%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142 +A +S DK +K ++ SCGVPV LV ++ I P V+KP G + G+ Sbjct: 215 IAEGISRDKDLTKTLLQSCGVPVPEGRLVESAEDAWEAAEDIGVPVVVKPSDGNHARGVF 274 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFY 200 ++ ++ +++ G +++E+YV G E V+G A+ EIA D Sbjct: 275 TNLMARA-EVESAYAAAVVEGSGVIVERYVRGSEHRLLVVGGKLAAAARGEIAKVVGDGK 333 Query: 201 SY--ELKYSSLNSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + EL +NS A + PLDI LA + +SR F D + Sbjct: 334 ATINELIDQQINSDPRRGAAEEFPLDIID-------LADNPVARLEVSRQGFAPDSI 383 >gi|319780474|ref|YP_004139950.1| hypothetical protein Mesci_0730 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166362|gb|ADV09900.1| hypothetical protein Mesci_0730 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 357 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP-----YVIKPLKGGSSLGII 142 AL DK RS V+ + G+PV + L D Q L+ PP + +KP + G+ +GI Sbjct: 120 ALCQDKFRSGAVLGALGLPVPQAGLAR----DGQWLVEPPASPAGWFVKPNRLGAKIGIW 175 Query: 143 VIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + D + L+L + + D ++++ YV G Sbjct: 176 PESRCSDLAHALELSRRVFSAYRDDVVVQPYVAG 209 >gi|257058868|ref|YP_003136756.1| cyanophycin synthetase [Cyanothece sp. PCC 8802] gi|256589034|gb|ACU99920.1| cyanophycin synthetase [Cyanothece sp. PCC 8802] Length = 877 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 30/110 (27%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137 SGIL L+ DK +K ++ G+PV P +F D ++ I P VIKPL G Sbjct: 209 SGILGVELACDKEGTKTMLQDSGIPV-PKGTTIQFFEDLENAIEDVGGFPIVIKPLDGNH 267 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------------LLIEQYVDG 174 GI + +SW+H ++ ++IE+Y G Sbjct: 268 GRGITI------------DINSWDHAEEAYDFASKESKTRSVIIERYYKG 305 >gi|330465023|ref|YP_004402766.1| phosphoribosylamine/glycine ligase [Verrucosispora maris AB-18-032] gi|328807994|gb|AEB42166.1| phosphoribosylamine/glycine ligase [Verrucosispora maris AB-18-032] Length = 388 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134 IP A+ L K +K V+++ GVP + + L PPYV+K Sbjct: 60 IPVFGPSAEAARLEGSKTFAKDVMTAAGVPTARAYTCTEAEGVGEALDEFGPPYVVKNDG 119 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 + G++V D+++ L+ Q +++IE+Y+DG E++ V+ D V + Sbjct: 120 LAAGKGVVVTD-DRAVALEHAQECG-----RVVIEEYLDGPEVSLFVVTDGEAAVPLL-- 171 Query: 195 PKSDF 199 P DF Sbjct: 172 PAQDF 176 >gi|242240541|ref|YP_002988722.1| siderophore biosynthesis protein [Dickeya dadantii Ech703] gi|242132598|gb|ACS86900.1| putative siderophore biosynthesis protein [Dickeya dadantii Ech703] Length = 388 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 8/98 (8%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKD 147 + +K R +Q +S+ G+P S ++ DS+ S P+ V+KP +G +S+ + ++ Sbjct: 109 AKEKWRMRQRLSALGLP---STWSSQLLPDSRVEASWPWPLVLKPSQGVASMDVTLMPTP 165 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 Q++ L +S LL+EQ++DG T +GD Sbjct: 166 QALEQFLAPQAS---RATLLLEQFIDGPLFTLETLGDG 200 >gi|149920385|ref|ZP_01908855.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] gi|149818827|gb|EDM78269.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] Length = 285 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D V HG G G + +P + A A + DK+ +Q +S +PV S+ Sbjct: 37 DRLLVVAHGPAGGTGKLHRAARSAGLPVLGAEPQAIATAYDKLLCRQRLSFRNLPVPRSV 96 Query: 112 LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ S + P V+KP +G + G++++ P DL +S +LL+ Sbjct: 97 ALSADRAASLRALEQLGWPAVLKPRRGAAGAGVMLLGS----PRDLDALASLE--PELLV 150 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY--SSLNSTHVLPAKIPLDIYKE 226 E+ + G E++ ++ A L + E+ + E+ S L S V P P+ + Sbjct: 151 ERRMLGREISVVLLDGALLGMAEV--------TREIGPGGSKLRSVTVPPKLDPI-ARRG 201 Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 + +A A + +G G + D + P +V LE+ P + S+ +A G S+ Sbjct: 202 LANVAVRAARELGLDAGPTCVDLILSPRDNEVI-LEVEPLPPVHRDSLVARVARAEGLSY 260 Query: 286 REL 288 EL Sbjct: 261 PEL 263 >gi|318079425|ref|ZP_07986757.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp. SA3_actF] Length = 491 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ ++ ++ Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 + ++ ++ S D LL+E++V Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208 >gi|307544381|ref|YP_003896860.1| ribosomal protein S6 modification protein [Halomonas elongata DSM 2581] gi|307216405|emb|CBV41675.1| ribosomal protein S6 modification protein [Halomonas elongata DSM 2581] Length = 320 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 89/192 (46%), Gaps = 28/192 (14%) Query: 90 SMDKMRSKQVVSSCGV--PVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 S DK+RS Q++S G+ PV P + + TM + P VIK L+G +G++ Sbjct: 115 SRDKLRSLQLLSRKGIGLPVTGFAHSPDDIPDLITM----VRGAPLVIKLLEGTQGIGVV 170 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDF 199 + + +Q+ ++Q+ + +++++Y+ G ++ C V+GD + + + +F Sbjct: 171 LAETNQAAE-SVIQAFMGMKAN-IMVQEYIKEAKGADIRCLVIGDKVVAAMKRQAAEGEF 228 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S + S + + P E + A A +A+G + ++ D L + Sbjct: 229 RSNLHRGGSASIIRITP---------EERSTAIRAAKAMGLK-VAGVDLLRS--NHGPVI 276 Query: 260 LEINVQPGMTPV 271 +E+N PG+ + Sbjct: 277 MEVNSSPGLRGI 288 >gi|291519947|emb|CBK75168.1| Biotin carboxylase [Butyrivibrio fibrisolvens 16/4] Length = 331 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 92 DKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+R K+ GVPV + ++ F+ + + P V+KP G SS+G+ + ++ + Sbjct: 105 DKLRFKEECEKFGVPVPKNFKLDMDFSKEDLAAVEYPVVVKPADGCSSIGMHICYNEEEL 164 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGD 184 + + ++++E+Y G E L C V G+ Sbjct: 165 IAGYKDAYEKSDAKKVVLEKYYSGEETSLLFCYVDGE 201 >gi|333024692|ref|ZP_08452756.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp. Tu6071] gi|332744544|gb|EGJ74985.1| putative acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp. Tu6071] Length = 666 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ ++ ++ Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 + ++ ++ S D LL+E++V Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208 >gi|318057639|ref|ZP_07976362.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp. SA3_actG] Length = 666 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ ++ ++ Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 + ++ ++ S D LL+E++V Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208 >gi|282896743|ref|ZP_06304751.1| D-alanylalanine synthetase [Raphidiopsis brookii D9] gi|281198461|gb|EFA73349.1| D-alanylalanine synthetase [Raphidiopsis brookii D9] Length = 391 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 12/125 (9%) Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQH 122 A+LE+L IPY L S++ K K+ + + G+ P + L + ++ Sbjct: 116 ALLEMLGIPYVGHNPLNSSILDQKHIFKRELQTWGINTAPFVTWHPAQGLFDHHRSENFA 175 Query: 123 LISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P P+V+KP+ G +SL I K + + + H LIE Y G E Sbjct: 176 ITFPNYKGPFVVKPVSGRASLNIHFAKNIEDLSAAVANIHHTTHSTA-LIETYFPGREFC 234 Query: 179 CGVMG 183 V G Sbjct: 235 VSVCG 239 >gi|77919721|ref|YP_357536.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus DSM 2380] gi|77545804|gb|ABA89366.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus DSM 2380] Length = 445 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVI 144 DK+R++Q V+ GVP+ P T+D I+ P +IK GG G+ V+ Sbjct: 115 DKIRARQTVTKAGVPILPGTTEGVGTIDQARQIAEEIGYPVIIKATAGGGGRGMKVV 171 >gi|320589745|gb|EFX02201.1| 3-methylcrotonyl-carboxylase subunit alpha [Grosmannia clavigera kw1407] Length = 750 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 25/247 (10%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90 S +D D+ + L L H LH +G E+ I + A A Sbjct: 86 SYLDGDKIIALALQH-----GIQALHPGYGFLSENAAFAERCAAAGITFVGPPAQAMADM 140 Query: 91 MDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK RSK ++ + GVP P + + + + P ++K ++GG G+ +++ Sbjct: 141 GDKARSKAIMLAAGVPCVPGYHGPDQAPEQLAVHAAK-VGYPVLLKSVRGGGGKGMRIVQ 199 Query: 146 KDQSIPLDL------LQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198 L ++S + G+ +L+E+Y V + V D T +A+ + D Sbjct: 200 TPDEFEAQLRSARAEARASFGDGGEVMLVERYIVRPRHVEVQVFADKH--GTAVALGERD 257 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 S + ++ + P + D+ ++ A A A+G G +F+ D + + F Sbjct: 258 C-SIQRRHQKILEESPAP-DLGDDLRHDLWDRARTAALAVGYVGAGTVEFILDRDTGEFF 315 Query: 259 WLEINVQ 265 ++E+N + Sbjct: 316 FMEMNTR 322 >gi|302521668|ref|ZP_07274010.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78] gi|302430563|gb|EFL02379.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78] Length = 661 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V + GVPV P S L + D+ I P ++KP GG G+ ++ ++ Sbjct: 115 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 174 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 + ++ ++ S D LL+E++V Sbjct: 175 ALLAEEIAAARREARSSFGDDTLLVERWV 203 >gi|289423730|ref|ZP_06425526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L] gi|289155857|gb|EFD04526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L] Length = 1147 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 14/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147 DK+ SK V + VP P + T+ ++ P ++K GG G+ +++++ Sbjct: 119 DKINSKIVAHAANVPTIPGVEKALKTIKEAKEVAAEIGYPVMVKASNGGGGRGMRIVRRE 178 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + + ++ + S + D + IE+Y+ D + ++GDA ++ + Sbjct: 179 EDLEIEFENARSESRKAFGEDIIFIEKYIEDPKHIEVQILGDAYGNIVHLYERDCSVQRR 238 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K LP +I I ++ R+A + + + +FL D +++E+ Sbjct: 239 HQKIIEHAPAFSLPTEIREKICQDAVRIA----KHVNYKSAGTLEFLVDKHGNH-YFIEM 293 Query: 263 NVQ 265 N + Sbjct: 294 NTR 296 >gi|119356886|ref|YP_911530.1| carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium phaeobacteroides DSM 266] gi|119354235|gb|ABL65106.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 485 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 20/187 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 DK+ SK++ VP P I + T + ++ P +IK GG G++ + Sbjct: 118 DKIESKKIAKEAKVPTIPGINSPKTAEEIRTWMQEEDVALPIIIKASSGGGGKGMVRVTH 177 Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201 D + L Q+ S D++L+E++++ G + ++ D +V + + Sbjct: 178 DSELENALAQARSEAKKSFGNDEILVEKFIEKGRHIEVQIIADQHGNVIHL-------FE 230 Query: 202 YELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E N + A P DI + + A + IG +FL D + K + Sbjct: 231 RECTLQRRNQKIIEEAPSPSIDDDIRQSICETAVQLMRTIGYSSAGTVEFLLDAATGKFY 290 Query: 259 WLEINVQ 265 +LE+N + Sbjct: 291 FLEVNTR 297 >gi|295675037|ref|XP_002798064.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01] gi|226280714|gb|EEH36280.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01] Length = 666 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 14/115 (12%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 A + DK+R+K++ +CGVP+ ++ L+ RF + + P ++K + GG Sbjct: 116 AQTGDKLRAKELAEACGVPILKAMKTPTNDIDLIGRFAAE----VGYPVMVKAVDGGGGR 171 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGDASLDVTEI 192 GI +K + + +++ + ++ +E+ G + V+GD + +V + Sbjct: 172 GIRFVKGADELQSAVDRATGESPSKKVFVEKAAVGSFHHVEVQVIGDGTGEVRHL 226 >gi|6164692|gb|AAF04496.1|AF157615_1 acetyl-CoA carboxylase 1 [Plasmodium falciparum] Length = 131 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 31/48 (64%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 P+ +P I++E+++ + + I RG ++L+D +++K F+LE+N Sbjct: 81 PSVVPYPIFREMEKSSIRLTKMIKYRGAGTIEYLYDQINKKYFFLELN 128 >gi|312132027|ref|YP_003999367.1| phosphoribosylamine/glycine ligase [Leadbetterella byssophila DSM 17132] gi|311908573|gb|ADQ19014.1| phosphoribosylamine/glycine ligase [Leadbetterella byssophila DSM 17132] Length = 430 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 18/166 (10%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL-------ELLEIPYTHSGILASA 88 +D + G+ A L+ D+ V+ ED LV I+ +L IP + Sbjct: 46 LDANNFEGIKKAVLENDIKLVVVGP---EDPLVNGIVDFFKADKQLKRIPIIGPDAKGAQ 102 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISP--PYVIKPLKGGSSLGIIV- 143 L K SK+ + G+P + T++ +L + PYV+K + G+I+ Sbjct: 103 LEGSKDFSKEFMLKYGIPTAAAETFTPETLEKGLSYLANQKGPYVLKADGLAAGKGVIIT 162 Query: 144 --IKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS 186 +++ Q+ D+L+ + G ++L+EQ++ GIEL+ V+ D Sbjct: 163 EDLQEAQNTLRDMLEGGKFGKAGSKVLVEQHLKGIELSVFVLSDGK 208 >gi|239979567|ref|ZP_04702091.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus J1074] gi|291451436|ref|ZP_06590826.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus J1074] gi|291354385|gb|EFE81287.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus J1074] Length = 675 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 A AL DK+R+K+ V + GVPV P S L + + I P ++KP GG G+ Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDAELAAAAREIGMPVLLKPSAGGGGKGM 168 Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173 +++++ ++ ++ + D LL+E+++D Sbjct: 169 RLVREEAALAEEIAAARREARASFGDDTLLVERWID 204 >gi|190894038|ref|YP_001984332.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] gi|190699699|gb|ACE93782.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 126 Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY LK S++ H +P + + ++ ++ + C+G+ R DF+++ Sbjct: 21 FYDDRLKQRSVDE-HAIPKILQGPAAERIRDDVLRLYKQLDCKGLVRFDFIYN--DGAPV 77 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +LE+N PG+ P S P ++ + +SF +L+ Sbjct: 78 YLEVNTIPGLLPESNAP-LSFQSRFSFEDLI 107 >gi|331226946|ref|XP_003326142.1| phosphoribosylformylglycinamidine cyclo-ligase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305132|gb|EFP81723.1| phosphoribosylformylglycinamidine cyclo-ligase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 792 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 ++ + + +P LAS + K SK ++ +P + F + +HL+S Sbjct: 79 IEGLFRKIGVPCFGPSELASKMEGSKAFSKDFMTKHDIPTARYANFSDFELAKKHLLSID 138 Query: 128 Y--VIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 Y VIK S G+++ + Q ++ +++ + GD+++IE+Y++G E++ Sbjct: 139 YKVVIKASGLASGKGVLIPENQQEALEALETIMVKKKFGSSGDEVVIEEYLEGQEISVLA 198 Query: 182 MGDA 185 + D Sbjct: 199 LSDG 202 >gi|2116977|dbj|BAA20124.1| D-alanine ligase [Clostridium perfringens] Length = 45 Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 1 YVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 39 >gi|163787199|ref|ZP_02181646.1| S6 modification enzyme RimK [Flavobacteriales bacterium ALC-1] gi|159877087|gb|EDP71144.1| S6 modification enzyme RimK [Flavobacteriales bacterium ALC-1] Length = 291 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 9/109 (8%) Query: 70 AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HL 123 A++ E+ + + + A+ S DK+RS Q +S G+ + ++ N ++ D + H+ Sbjct: 75 AVVRQFEMMNVFTTVTSDAIIRSRDKLRSFQRLSKAGIGMPKTVFTN-YSRDVEEVLEHV 133 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 PP +IK L+G LG +V+ + ++ +L++ S + L+++Y+ Sbjct: 134 GGPPVIIKLLEGTQGLG-VVLAESKNAAESVLEAFSGLQA-RALVQEYI 180 >gi|126657548|ref|ZP_01728704.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110] gi|126621252|gb|EAZ91965.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110] Length = 872 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGG 136 +SGILA L+ DK +K ++ GVPV P +F + + I P VIKPL G Sbjct: 208 YSGILAVELACDKEGTKTILQDAGVPV-PKGTTIQFFEELESAIDDVGGYPIVIKPLDGN 266 Query: 137 SSLGIIV 143 GI + Sbjct: 267 HGRGITI 273 >gi|258597921|ref|XP_001348838.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative [Plasmodium falciparum 3D7] gi|255528926|gb|AAN37277.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative [Plasmodium falciparum 3D7] Length = 3367 Score = 37.4 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 31/48 (64%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 P+ +P I++E+++ + + I RG ++L+D +++K F+LE+N Sbjct: 769 PSVVPYPIFREMEKSSIRLTKMIKYRGAGTIEYLYDQINKKYFFLELN 816 >gi|172037152|ref|YP_001803653.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142] gi|20138007|sp|Q9KGY4|CPHA_CYAA5 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin synthase gi|9739167|gb|AAF97933.1|AF279247_1 cyanophycin synthetase [Cyanothece sp. ATCC 51142] gi|171698606|gb|ACB51587.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142] Length = 872 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135 +SGILA L+ DK +K ++ GVPV P +F + + I P VIKPL G Sbjct: 207 NYSGILAVELACDKEGTKTILQDAGVPV-PRGTTIQFFEELESAIDDVGGYPIVIKPLDG 265 Query: 136 GSSLGIIV 143 GI + Sbjct: 266 NHGRGITI 273 >gi|313619829|gb|EFR91419.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378] Length = 92 Score = 37.4 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +I ++++ A A + G+ R+DF ++F E+N PG TP S++P + Sbjct: 3 EILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQET 61 Query: 282 GYSFRELLLWMVEDA 296 G + L+ +V+ A Sbjct: 62 GLPYGALIERLVDLA 76 >gi|326431414|gb|EGD76984.1| 3-methylcrotonyl CoA carboxylase [Salpingoeca sp. ATCC 50818] Length = 619 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 23/198 (11%) Query: 83 GILASA-LSM-DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGG 136 G ASA LSM K SK+++ GVP+ F +D I P +IK +KGG Sbjct: 61 GPPASAILSMGSKSESKEIMEPSGVPIVKGYHGENQDPSFLLDQARDIGFPVLIKAVKGG 120 Query: 137 SS--LGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDG-----IELTCGVMGDASL 187 + +++ +KD L++ + S H D++LIE+YV +++ G+A Sbjct: 121 GGKGMRVVMQEKDFMENLEMAKGESRKHFSDDRVLIEKYVQRPRHVEVQVFADKYGNA-- 178 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + + D S + ++ + P P ++ KE+ A A A+G G + Sbjct: 179 ----VYLFERDC-SLQRRHQKIIEEAPAPGLSP-ELRKELGEAAVRAALAVGYVGAGTVE 232 Query: 248 FLFDPLSRKVFWLEINVQ 265 F+ D + + F++E+N + Sbjct: 233 FIMDTTTHEFFFMEMNTR 250 >gi|167749995|ref|ZP_02422122.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702] gi|167657016|gb|EDS01146.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702] Length = 325 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 27/192 (14%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK + ++ +P LV T D+ + P V+KP++G S G++ P Sbjct: 113 DKFSTNTLLLQNELPAVTDFLV---TADTVYNGEYPCVLKPIRGRGSQGVVKC----DTP 165 Query: 152 LDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELK 205 + +++ +S +GD ++ E+Y+ G E+T V D SL E K+ Y Sbjct: 166 EEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFIERFDQKNGIAPYNGD 225 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLA--FLAHQA---IGCRGISRSDFLFDPLSRKVFWL 260 + ++ V+ L ++ LA L +A I CR +F K+F Sbjct: 226 VPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVRIDCRADKNGNF-------KMF-- 276 Query: 261 EINVQPGMTPVS 272 + N +P +T S Sbjct: 277 DFNPKPNLTGAS 288 >gi|120437606|ref|YP_863292.1| phosphoribosylamine--glycine ligase [Gramella forsetii KT0803] gi|117579756|emb|CAL68225.1| phosphoribosylamine--glycine ligase [Gramella forsetii KT0803] Length = 423 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 20/139 (14%) Query: 64 EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 ED LV+ I++ L +I + L K R+K+ ++ G+P F Sbjct: 71 EDPLVKGIVDYFTNDERLKDIQIIGPSSRGALLEGSKERAKEFMAMHGIPTAA---YESF 127 Query: 117 TMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG---DQL 166 + +S + PPYV+K + G+++I+ + +L S G ++ Sbjct: 128 SFESLGAGKNFLETLKPPYVLKADGLAAGKGVLIIEDLEEAKKELENMLSGKFGAASKKV 187 Query: 167 LIEQYVDGIELTCGVMGDA 185 +IE+++DGIEL+ V+ D Sbjct: 188 VIEEFLDGIELSVFVLTDG 206 >gi|46109598|ref|XP_381857.1| hypothetical protein FG01681.1 [Gibberella zeae PH-1] Length = 662 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H +S P + KP G SS + + ++ + S HG +L+IE Y DG E+ Sbjct: 347 RHDLSYPLIAKPCGGWSSEAVYRVDSRDALETAISAIFSSRHGHELVIEPYCDGPEVDVN 406 Query: 181 -VMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTH----VLPAKIP 220 V+ D L E+ +PKS + K SL++ H V P+K+P Sbjct: 407 LVLQDGQLLFFEVCDDLPKSADVNGP-KVGSLSTFHELCSVYPSKLP 452 >gi|194333134|ref|YP_002014994.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris aestuarii DSM 271] gi|194310952|gb|ACF45347.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris aestuarii DSM 271] Length = 448 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Query: 92 DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK +K+ + + GVPV P + + + I P +IKP GG G+ V+ + Sbjct: 116 DKNSAKETMIAAGVPVIPGSDGLVRDTAHALKTAEKIGYPVIIKPTAGGGGKGMRVVNEP 175 Query: 148 QSIPLDLLQSSSWNHGDQ------LLIEQYVD 173 + I LL +S N Q + IE++V+ Sbjct: 176 EKIQKALL--TSQNEAQQAFGNSGVYIEKFVE 205 >gi|319404296|emb|CBI77889.1| Biotin carboxylase [Bartonella rochalimae ATCC BAA-1498] Length = 452 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 91/218 (41%), Gaps = 19/218 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE I + + DK+ +K+ S G+PV P +I+ Sbjct: 82 YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDNAIVEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170 + + + I P +IK GG G+ V +Q + ++S+ + D + IE+ Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDSVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++ IE+ ++GD + + + K + VL K++ Sbjct: 202 YLEKPRHIEIQ--IIGDGAGNAIHLGERDCSLQRRHQKVWEEAHSPVLNEA----ERKKI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + A +G RG +FL++ + + +++E+N + Sbjct: 256 GNIVANACAKLGYRGAGTIEFLYE--NGEFYFIEMNTR 291 >gi|224085521|ref|XP_002307604.1| predicted protein [Populus trichocarpa] gi|222857053|gb|EEE94600.1| predicted protein [Populus trichocarpa] Length = 760 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 19/186 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK SK+++ + GVP+ P + ++ I P +IKP GG G+ +++ Sbjct: 153 DKSASKRIMGAAGVPLVPGYHGSEQDIELMKSEADKIGYPILIKPTHGGGGKGMRIVQSP 212 Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 L + ++ + G + +L+E+Y+ + + GD +V + Y Sbjct: 213 NEFVDSFLGAQREAAASFGINTILLEKYITKPRHIEVQIFGDKHGNVLHL-------YER 265 Query: 203 ELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + + A P D + + A A +A+G +F+ D +S + ++ Sbjct: 266 DCSVQRRHQKIIEEAPAPNVMNDFRSHLGQAAVSAAKAVGYHNAGTVEFIVDTVSGQFYF 325 Query: 260 LEINVQ 265 +E+N + Sbjct: 326 MEMNTR 331 >gi|159471359|ref|XP_001693824.1| predicted protein [Chlamydomonas reinhardtii] gi|158283327|gb|EDP09078.1| predicted protein [Chlamydomonas reinhardtii] Length = 440 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 22/218 (10%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL 123 L + E L +P + +A DK ++++++ G+P V + H Sbjct: 110 LASRLAEALGLPSNTPQAVDNA--RDKHATREIMAKAGLPTPRHWKVTSEADVPKAAAH- 166 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI---------EQYVDG 174 + P VIKP+ G +SLG+I ++ + H +++ Y+DG Sbjct: 167 VGFPAVIKPISGAASLGVIRANNEEDLMKAFKNREGSAHAPDVVVWGRVCGSIRGAYLDG 226 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+ C ++ D V + N VLP +D+ + L+ A Sbjct: 227 AEVDCDLIFDNGRPVYGAITDNWPTVEPYFNETGSNCPSVLPKAAQIDLME----LSVRA 282 Query: 235 HQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 Q++G + G+ + F SR +E+N + G PV Sbjct: 283 VQSLGFKLGVFHVECKF--TSRGARLIEVNCRMGGGPV 318 >gi|257064138|ref|YP_003143810.1| carbamoylphosphate synthase large subunit [Slackia heliotrinireducens DSM 20476] gi|256791791|gb|ACV22461.1| carbamoylphosphate synthase large subunit [Slackia heliotrinireducens DSM 20476] Length = 423 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A DK K + G+P S+ V++ T+ D I+ P V KP+ S G+ V+ Sbjct: 105 AYVRDKTLMKGMFDELGIPHAKSVQVHKDTLEDDLSGITFPCVTKPVDSYGSRGVYVLDT 164 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + ++++ +++E+YV G E+ Sbjct: 165 AEEVRECFDEVEAYSNRGYIIVEEYVQGDEIN 196 >gi|46138797|ref|XP_391089.1| hypothetical protein FG10913.1 [Gibberella zeae PH-1] Length = 1834 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 13/182 (7%) Query: 93 KMRSKQVVSSCGVPVCP--SILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K R++ + GVPV P +L+ + + + I P ++K GG +G+ K + Sbjct: 757 KHRARSIAVKVGVPVIPGCEMLLESLKEAILESNKIGFPLMLKSTAGGGGIGLSYCKDVE 816 Query: 149 --SIPLDLLQSSS-WNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 S +++Q + N GD + +E+Y++ + ++GD + V Sbjct: 817 GLSATFEVVQRQAVANFGDGGVFLERYIERARHVEIQILGDGTGRVVSAGERDCSLQRRH 876 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 K + ++P + ++ + RLA ++ R + +F++D +++ ++LE+N Sbjct: 877 QKIVEESPAGMIPKSVRTEMKEAALRLA----SSVRYRNVGTVEFIYDLDTKEYYFLEVN 932 Query: 264 VQ 265 + Sbjct: 933 TR 934 >gi|54027012|ref|YP_121254.1| putative acetyl-CoA carboxylase subunit alpha [Nocardia farcinica IFM 10152] gi|54018520|dbj|BAD59890.1| putative acetyl-CoA carboxylase alpha subunit [Nocardia farcinica IFM 10152] Length = 694 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ +K VS+ GVPV P I + D + + P ++KP GG G+ + Sbjct: 122 DKIAAKNTVSAFGVPVVPGIAEPGLSDDDLIAAAAEVGYPVLVKPSAGGGGKGMRRVDDP 181 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 +P L+ ++ + D L +E++V Sbjct: 182 ADLPAALVSARREAGAAFGDDTLFLERFV 210 >gi|330720002|gb|EGG98446.1| Ribosomal protein S6 glutaminyl transferase [gamma proteobacterium IMCC2047] Length = 303 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 22/191 (11%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140 +A + S DK+RS Q++S GV + P+ D LI P VIK L+G +G Sbjct: 94 VAISRSRDKLRSLQLLSRRGVGI-PATAFAHSPDDIHGLIREVGGAPCVIKLLEGTQGIG 152 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197 +++ + ++ + + + +L+++++ G ++ C V+G + + P+ Sbjct: 153 VVLAETRKA--AESVIQAFMGLKTNILVQEFIKEAGGADIRCFVVGGKVIAAMQRQAPEG 210 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +F S + S + PA+ +R A A + +G + D L R Sbjct: 211 EFRSNIHRGGSAKLVRITPAE---------RRTAVNAAKVMGL-NVCGVDLLRS--ERGP 258 Query: 258 FWLEINVQPGM 268 +E+N PG+ Sbjct: 259 LVMEVNSSPGL 269 >gi|254416325|ref|ZP_05030078.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420] gi|196176763|gb|EDX71774.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420] Length = 869 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDS--QHLISPPYVIKPLKGGS 137 +SGIL L+ DK +KQ++ GVPV V +DS +++ P VIKPL G Sbjct: 184 YSGILGVELACDKEGTKQILLDAGVPVPRGTTVLYLDELDSAIEYVGGYPIVIKPLDGNH 243 Query: 138 SLGIIV 143 GI + Sbjct: 244 GRGITI 249 >gi|114331392|ref|YP_747614.1| cyanophycin synthetase [Nitrosomonas eutropha C91] gi|114308406|gb|ABI59649.1| cyanophycin synthetase [Nitrosomonas eutropha C91] Length = 765 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 11/105 (10%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSS 138 +A ++S DK +K ++ +CG+PV P R D I P V+KP G Sbjct: 226 IAESISRDKELTKSLLRACGIPV-PE---GRIVTDPADAWLAAADIGLPVVVKPSDGNHG 281 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 G+ I+ ++ S + G +L+E+Y+ GIE ++G Sbjct: 282 RGVF-IELSTREEIESAFSIAQQEGSDVLVERYISGIEHRLLIVG 325 >gi|126172754|ref|YP_001048903.1| alpha-L-glutamate ligase [Shewanella baltica OS155] gi|153002325|ref|YP_001368006.1| alpha-L-glutamate ligase [Shewanella baltica OS185] gi|217974913|ref|YP_002359664.1| RimK family alpha-L-glutamate ligase [Shewanella baltica OS223] gi|304410862|ref|ZP_07392479.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183] gi|307304967|ref|ZP_07584717.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175] gi|190360194|sp|A6WT04|RIMK2_SHEB8 RecName: Full=Ribosomal protein S6 modification protein 2 gi|190360201|sp|A3CZX1|RIMK1_SHEB5 RecName: Full=Ribosomal protein S6 modification protein 1 gi|125995959|gb|ABN60034.1| alpha-L-glutamate ligases, RimK family [Shewanella baltica OS155] gi|151366943|gb|ABS09943.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS185] gi|217500048|gb|ACK48241.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS223] gi|304350759|gb|EFM15160.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183] gi|306912369|gb|EFN42793.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175] Length = 301 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134 Y + ++ A S DK+R+ Q++S G+ + + N+ D LI+ P VIK L+ Sbjct: 86 YAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPN-DIPDLINMVGGAPLVIKLLE 144 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTE 191 G +G+++ + + + + + +L+++Y+ +G ++ C V+GD + + Sbjct: 145 GTQGIGVVLAETKTA--AESVIEAFLGLKANILVQEYIKESNGSDIRCFVVGDKVIASMK 202 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 P+ DF S + H+ + I +++A A +A+G ++ D L Sbjct: 203 RQGPEGDFRS---------NLHLGGCGEVVKITAVERKMAIAAVKAMGLV-VAGVDILRS 252 Query: 252 PLSRKVFWLEINVQPGM 268 +R LE+N PG+ Sbjct: 253 --NRGPLILEVNSAPGI 267 >gi|145237730|ref|XP_001391512.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus niger CBS 513.88] gi|134075986|emb|CAK48180.1| unnamed protein product [Aspergillus niger] Length = 709 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSS--LGIIVIK 145 DK +SK+++++ GVP P + F I P +IK +KGG + I K Sbjct: 149 DKSQSKKIMTAAGVPCVPGYHGDNQDVNFLEAEADKIKYPVLIKAIKGGGGKGMRIAHTK 208 Query: 146 KDQSIPLDLLQSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 D L +S + N D +L+E+Y+ + V D + + Sbjct: 209 ADFQAQLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKQGNAVALGERDCSIQRR 268 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 269 HQKILEESPAPHLPDATRKDIWAKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 324 Query: 263 NVQ 265 N + Sbjct: 325 NTR 327 >gi|307635125|gb|ADN78405.1| carbamoyl-phosphate synthase-like protein [Geobacter sulfurreducens KN400] Length = 326 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 ++ DK ++ Q + + G+ PS L N ++ L PP ++KP G S GI++++ ++ Sbjct: 115 IAKDKWKTVQTLITHGIEPIPSTLSNEWSDCVTLLGPPPLIMKPRHGNGSRGIVILENER 174 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMG 183 + +S + ++++++ V + E T V G Sbjct: 175 D--FNYWKSKT---NQEVMVQRIVSSMDEEYTVAVFG 206 >gi|220913928|ref|YP_002489237.1| phosphoribosylamine--glycine ligase [Arthrobacter chlorophenolicus A6] gi|219860806|gb|ACL41148.1| phosphoribosylamine/glycine ligase [Arthrobacter chlorophenolicus A6] Length = 438 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 29/243 (11%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134 IP A+ L K +K++++ GVP +++ + L PYV+K Sbjct: 87 IPVFGPSKAAAQLEASKAFAKEIMAEAGVPTAMALVATTAEEAASALDTFGAPYVVKDDG 146 Query: 135 GGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + G++V + +D+++ S ++ G ++IE+++DG E++ V+ D V Sbjct: 147 LAAGKGVVVTRNRDEAL---AHAQSCFDAGGSVVIEEFLDGPEVSLFVLCDGHNTVA--L 201 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSD 247 P DF +T + A PL+ E + R+A + RG Sbjct: 202 SPAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMARRGTPFVG 260 Query: 248 FLFDPL---SRKVFWLEINVQPG-----------MTPVSIFPEMAAYAGYSFRELLLWMV 293 LF L SR +E NV+ G TP+ AA E L W Sbjct: 261 VLFVGLALTSRGTRVIEFNVRFGDPETQAVLARLKTPLGSLLLSAAKGELDTAEELRWAK 320 Query: 294 EDA 296 E A Sbjct: 321 ETA 323 >gi|302775638|ref|XP_002971236.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii] gi|300161218|gb|EFJ27834.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii] Length = 636 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 28/195 (14%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136 G A+A+S+ DK SK+++S VPV P + I P +IKP+ GG Sbjct: 139 GPSAAAISLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGG 198 Query: 137 SSLGIIVIKKDQSIPLDLLQS----SSWNHGD-QLLIEQYV-DGIELTCGVMGDASLDVT 190 G+ ++ LD L+S S+ GD ++LIE+Y+ + + GD +V Sbjct: 199 GGKGMRIVHSRDEF-LDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVV 257 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +E S + + P + + R +IG ++ + F+ Sbjct: 258 HL---------FERDCSVQRRHQKIIEEAPAPLMSDDFR------NSIGQAAVNAAKFIV 302 Query: 251 DPLSRKVFWLEINVQ 265 D + F++E+N + Sbjct: 303 DTATGDFFFMEMNTR 317 >gi|224438204|ref|ZP_03659139.1| phosphoribosylamine--glycine ligase [Helicobacter cinaedi CCUG 18818] gi|313144649|ref|ZP_07806842.1| GAR synthetase PurD [Helicobacter cinaedi CCUG 18818] gi|313129680|gb|EFR47297.1| GAR synthetase PurD [Helicobacter cinaedi CCUG 18818] Length = 426 Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP--LKGGSSLGI 141 AS L K K +VS G+ + N S+ H ++PP V+K L G + + Sbjct: 96 ASRLESSKAYMKDLVSQAGIKTAKYMQSNDINALSEFIHTLTPPIVVKADGLCAGKGV-V 154 Query: 142 IVIKKDQSIP--LDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDA 185 I + +++I ++L ++ N G +++IE+Y+DG EL+ + D Sbjct: 155 IALSHNEAIAHTKEMLSGKAFGNAGMRVVIEEYLDGYELSVFAVSDG 201 >gi|58045578|gb|AAW65097.1| vancomycin resistance protein [Enterococcus casseliflavus] Length = 93 Score = 37.0 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P KP + GSS GI + + I L ++ + +L+++ + G+E+ CG++G+ S Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNS 211 L V + F+ +E KY +++ Sbjct: 67 LTVGACDAISLVNGFFDFEEKYQLISA 93 >gi|85706530|ref|ZP_01037623.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp. 217] gi|85668942|gb|EAQ23810.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp. 217] Length = 672 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 13/171 (7%) Query: 104 GVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 GVPV P + + + P+++K GG G+ ++ P + + + Sbjct: 132 GVPVLPGYRGADQSDARLLQEAKALGTPFLVKASAGGGGRGMRLVTDMADAPEAIASARA 191 Query: 160 WNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 G + +E+Y + V+GD + V + S + + L Sbjct: 192 EAQGAFGDPAVFLERYAPRARHVEVQVLGDTNGTVLHLG---DRDCSLQRNHQKLIEEAP 248 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 P +P D+ ++++ A QAIG R ++L+DP + ++LE+N + Sbjct: 249 AP-DLPDDLREDMRAAAVRLAQAIGYRSAGTVEYLYDPEHAEYYFLEMNTR 298 >gi|311070461|ref|YP_003975384.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942] gi|310870978|gb|ADP34453.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942] Length = 416 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 46/258 (17%) Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 ED +L L E + A L + + S QV++ C ++ R +++ Sbjct: 72 EDDHFDGVLTLFEPALNFTAKAAEELGLRHLPS-QVIAICRNKYATRQVLKRHQLNTPFF 130 Query: 124 -------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD------ 164 + P V+KP+ G SS G++ + + + + + N GD Sbjct: 131 YEISSAADIDAGGLRYPLVVKPINGFSSQGVVRVNDQDQLKEAISKVEAINQGDLGKFIQ 190 Query: 165 ---QLLIEQYVDGIELTCGVMG-DASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPA 217 +++EQ++DG E M + V I K F+ ++ PA Sbjct: 191 GNSGIIVEQFIDGPEFVIETMSIQGKVHVLSIGYKGDCKGPFFE--------EGVYIAPA 242 Query: 218 KIP----LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++ L I +EV++ A A+G G + ++ D S K F +E+ + G + +S Sbjct: 243 RLEEESRLAITEEVRK----AVSALGIDNGAAHTELRLDQ-SGKPFVIEVAPRIGGSGIS 297 Query: 273 IFPEMAAYAGYSFRELLL 290 F + G +F EL++ Sbjct: 298 HFI-VKESTGVNFMELII 314 >gi|302037782|ref|YP_003798104.1| acetyl-Coa carboxylase, biotin carboxylase [Candidatus Nitrospira defluvii] gi|300605846|emb|CBK42179.1| Acetyl-CoA carboxylase, biotin carboxylase [Candidatus Nitrospira defluvii] Length = 449 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 14/187 (7%) Query: 88 ALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 AL DK ++++VV+ G+PV P + + ++ I P +IK GG G+ V Sbjct: 111 ALMGDKSKAREVVAKKGLPVTPGSPGELRSEQDAQEAAKTIGFPVIIKASAGGGGRGMRV 170 Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 + K + + + S++ H L +++ + ++ D V + + D Sbjct: 171 VNKPEELARAFQAAQAEAKSTFGHDGVYLERYFLEPRHIEVQIVADNRGHVVHLG--ERD 228 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 S + ++ L PA I ++ +E+ R+A A +AI + +FL D R F Sbjct: 229 -CSIQRRHQKLVEETPSPA-IDEELRREIGRVAVQAVKAIRYCNVGTVEFLLDK-DRNFF 285 Query: 259 WLEINVQ 265 ++E+N + Sbjct: 286 FMEVNTR 292 >gi|22299713|ref|NP_682960.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1] gi|10047072|emb|CAC07987.1| cyanphycin synthetase [Synechococcus elongatus] gi|22295897|dbj|BAC09722.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1] Length = 896 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137 S ILA L+ DK +K+++ G+PV P V R+ D I P VIKPL G Sbjct: 209 SSILAVELASDKEGAKRLLQDAGIPV-PKGTVIRYIEDLPEAIEEIGGYPIVIKPLNGNH 267 Query: 138 SLGIIV 143 GI + Sbjct: 268 GRGITI 273 >gi|332798387|ref|YP_004459886.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Tepidanaerobacter sp. Re1] gi|332696122|gb|AEE90579.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Tepidanaerobacter sp. Re1] Length = 380 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 13/176 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSI 150 DK + KQ++ G+P ++VN D+ P V K KGG G+ VI+K + I Sbjct: 105 DKSKQKQMLDKNGIPTARWVMVNDDLSDAIENFGLPAVQKACKGGYDGRGVYVIEKPEDI 164 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 S+ D L E EL V + + ++ V + F + +++ Sbjct: 165 -------SNALKCDSFLEELIPIEKELAVMVARNTNKEIKCYPVVEMTFD----QRANIC 213 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 V PA+I I K+ LA +A+ GI + P +KV EI +P Sbjct: 214 DNTVAPARIEESIKKQALDLAMRCVEALDGVGIFGIEMFLTP-DKKVLVNEIAPRP 268 >gi|160877049|ref|YP_001556365.1| alpha-L-glutamate ligase [Shewanella baltica OS195] gi|190360195|sp|A9L4I9|RIMK2_SHEB9 RecName: Full=Ribosomal protein S6 modification protein 2 gi|160862571|gb|ABX51105.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS195] gi|315269253|gb|ADT96106.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS678] Length = 301 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 22/197 (11%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134 Y + ++ A S DK+R+ Q++S G+ + + N+ D LI+ P VIK L+ Sbjct: 86 YAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPN-DIPDLINMVGGAPLVIKLLE 144 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTE 191 G +G+++ + + + + +L+++Y+ +G ++ C V+GD + + Sbjct: 145 GTQGIGVVL--AETKTAAESVIEAFLGLKANILVQEYIKESNGSDIRCFVVGDKVIASMK 202 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 P+ DF S + H+ + I +++A A +A+G ++ D L Sbjct: 203 RQGPEGDFRS---------NLHLGGCGEVVKITAVERKMAIAAVKAMGLV-VAGVDILRS 252 Query: 252 PLSRKVFWLEINVQPGM 268 +R LE+N PG+ Sbjct: 253 --NRGPLILEVNSAPGI 267 >gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] Length = 885 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138 + ++A L+ DK +KQV+++ G+ V ++V + + P V+KPL+G Sbjct: 203 RTSLVAGDLASDKHLTKQVLAAGGITVPQGVIVTAAGQAVKAWEQFGAPVVLKPLRGNQG 262 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 G + + + ++ + + H ++L+E+Y+ G Sbjct: 263 KG-VTLNVHSAAEVERAFAFAAAHDREVLVEEYIPG 297 >gi|283457375|ref|YP_003361951.1| phosphoribosylamine-glycine ligase [Rothia mucilaginosa DY-18] gi|283133366|dbj|BAI64131.1| phosphoribosylamine-glycine ligase [Rothia mucilaginosa DY-18] Length = 465 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143 A+ L K +KQV+ VP + + L PYV+K + G++V Sbjct: 134 AAQLEGSKAFAKQVMEEASVPTARAYVAKNAAEAQAALDEFGAPYVVKDDGLAAGKGVVV 193 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + D++ L+ Q+ +N G ++IE+++DG E++ V+ D Sbjct: 194 TE-DRAAALEHAQAC-FNAGGTVVIEEFLDGPEVSLFVISD 232 >gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134] gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134] Length = 878 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++S DK +K ++ SCGVPV +V ++ I P V+KP G G+ Sbjct: 212 IAESISRDKDLTKSLLESCGVPVPEGRMVESPEDAWEAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ +++ ++ + + G +++E++V G E V+G Sbjct: 272 TNLMTREE---VETAYAVAIEEGSGVIVERFVPGNEHRLLVVG 311 >gi|289808020|ref|ZP_06538649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 54 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 +AVL+GG S+ER+VSL+SG A + L + G +D Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVD 41 >gi|154148767|ref|YP_001407085.1| biotin carboxylase [Campylobacter hominis ATCC BAA-381] gi|153804776|gb|ABS51783.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter hominis ATCC BAA-381] Length = 444 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 19/224 (8%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP- 109 P F + NF E I E + + A AL DK ++K + GVPV P Sbjct: 81 PGYGFLSENQNFAE------ICEKEGLKFIGPSTSAMALMSDKSKAKAFMKRAGVPVVPG 134 Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHG 163 S + +++ L I P ++K GG G+ V+ K + + + + S G Sbjct: 135 SDGALKDVNEAKKLAEEIGYPVILKAAAGGGGRGMRVVNKPEDLEKNFWSAESEALAAFG 194 Query: 164 D-QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 D + IE+Y + ++GD +V I K + +L K Sbjct: 195 DGTMYIEKYFTSPRHIEVQILGDEHGNVVHIGERDCSLQRRHQKLIEESPAVILDEKT-- 252 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +E+ +A A +AIG +FL+D +K +++E+N + Sbjct: 253 --REELHEVAVKATKAIGYSSAGTFEFLYDRKDKKFYFIEMNTR 294 >gi|188996965|ref|YP_001931216.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] gi|188932032|gb|ACD66662.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] Length = 476 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 18/189 (9%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 AL DKM +K+ + GVP+ P I + + + I P ++K GG G+ + Sbjct: 113 ALFGDKMAAKKKMRELGVPILPGSDEPISDMKKAKEIANEIGYPVILKAAYGGGGRGMRI 172 Query: 144 IKKDQSIPLDLLQSSSWNHGDQ------LLIEQYVDG-IELTCGVMGDASLDVTEIAVPK 196 ++ + + L S++N + + IE+YV+ + +M D +V + Sbjct: 173 VRSESE--FETLFQSAYNEAKKFFGKGDVFIEKYVENPRHIEIQIMADKYGNVVHLGERD 230 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 S + ++ + P+ + ++ KE+ R + A +G + ++L D + Sbjct: 231 C---SIQRRHQKIVEIARSPS-LDEEVKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNN 285 Query: 257 VFWLEINVQ 265 +++E+N + Sbjct: 286 FYFIEMNTR 294 >gi|325577885|ref|ZP_08148118.1| ribosomal protein S6 modification protein [Haemophilus parainfluenzae ATCC 33392] gi|325160315|gb|EGC72442.1| ribosomal protein S6 modification protein [Haemophilus parainfluenzae ATCC 33392] Length = 299 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKK 146 + DK RS Q++ G+ V PS +++ ++ + I + P +IK LKG +G+I+ ++ Sbjct: 105 ARDKWRSLQMLLEQGIAV-PSSVLSGCEVEPKQTIKQTTSPMIIKTLKGSQGIGVILAER 163 Query: 147 DQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYS 201 QS L+ L+ ++ +L++ +V+ G ++ C V+GD + + +F + Sbjct: 164 PQSAVSILETLKDANVP----VLLQDFVEEAKGTDIRCFVIGDKVVATMQRIGQDGEFRA 219 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + H + + +E + +A A +A+G ++ D + + LE Sbjct: 220 ---------NFHRGGTAEKIKLTEEEKSIAIRATKALGL-AVAGVDLIRS--KEGLLVLE 267 Query: 262 INVQPGM 268 +N PG+ Sbjct: 268 VNASPGL 274 >gi|332710439|ref|ZP_08430386.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L] gi|332350770|gb|EGJ30363.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L] Length = 1085 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 21/184 (11%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKP--LKGGSSLGIIVIKK 146 D++ K+ + GV VCPS + N +Q + S P +I+P GGS GI K+ Sbjct: 128 DRLLFKEAMERIGVGVCPSGIANNLKEAKAIAQKIGSYPLIIRPAFTLGGSGGGIAYNKE 187 Query: 147 D-QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYE 203 + +++ L +S + Q+L+EQ + G E VM D + +V I ++ D Sbjct: 188 EYETMAQGGLDASPVS---QILVEQSLLGWKEYELEVMRDLADNVVIICSIENVD----P 240 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI----SRSDFLFDPLSRKVFW 259 + + +S V PA+ D KE QRL + + I G+ S F +P++ +V Sbjct: 241 MGIHTGDSITVAPAQTLTD--KEYQRLRDYSIKIIREIGVETGGSNIQFAVNPINGQVIV 298 Query: 260 LEIN 263 +E+N Sbjct: 299 IEMN 302 >gi|28377385|ref|NP_784277.1| hypothetical protein lp_0493 [Lactobacillus plantarum WCFS1] gi|28270217|emb|CAD63118.1| unknown [Lactobacillus plantarum WCFS1] Length = 413 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 22/162 (13%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS----SWNH---GDQLLIEQ 170 +++ I P ++KP SS+ + + +Q + LQ S S+ H ++ ++E+ Sbjct: 137 LEASKKIGFPLILKPTNTASSIDVFYVSDEQQLRERFLQISQLKQSYMHFKVREEYILEE 196 Query: 171 YVDG----IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G +EL A ++VTE K ++ + HV P + + KE Sbjct: 197 FMSGPEFSVELFLSNNEIAFVEVTEKHTTKPPYF--------VELMHVFPTTVDVAYKKE 248 Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPG 267 + A+ A +A+G G + ++ +V +E+N +PG Sbjct: 249 IINTAYCAVRALGFHNGPTHAEVKLTDAGARV--VEVNGRPG 288 >gi|317401779|gb|EFV82395.1| cyanophycin synthetase [Achromobacter xylosoxidans C54] Length = 871 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142 +A +S DK +K+++S+CGVPV LV+ + I P V+KP G G+ Sbjct: 212 IAEGISRDKDLTKELLSTCGVPVPEGRLVDSEDDAWSAAEDIGLPVVVKPYDGNHGRGVF 271 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + + + + + G +++E++V G E V+G+ Sbjct: 272 TNLTTREEVVSAYRVAV-DEGSGVIVERFVLGNEHRLLVVGN 312 >gi|253991536|ref|YP_003042892.1| hypothetical protein PAU_04063 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638414|emb|CAR67036.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782986|emb|CAQ86151.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 431 Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 S PY VIKP G ++LG++ +K +IP QS + + G+Q+L E+ + Sbjct: 154 SVPYGVVIKPNCGRANLGVVAVKDRNNIPAAFAQSVAQSGGNQILAEELI 203 >gi|302775644|ref|XP_002971239.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii] gi|300161221|gb|EFJ27837.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii] Length = 557 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 28/195 (14%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136 G A+A+S+ DK SK+++S VPV P + I P +IKP+ GG Sbjct: 139 GPSAAAISLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGG 198 Query: 137 SSLGIIVIKKDQSIPLDLLQS----SSWNHGD-QLLIEQYV-DGIELTCGVMGDASLDVT 190 G+ ++ LD L+S S+ GD ++LIE+Y+ + + GD +V Sbjct: 199 GGKGMRIVHSRDEF-LDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVV 257 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +E S + + P + + R +IG ++ + F+ Sbjct: 258 HL---------FERDCSVQRRHQKIIEEAPAPLMSDDFR------NSIGQAAVNAAKFIV 302 Query: 251 DPLSRKVFWLEINVQ 265 D + F++E+N + Sbjct: 303 DTATGDFFFMEMNTR 317 >gi|255326691|ref|ZP_05367767.1| phosphoribosylamine--glycine ligase [Rothia mucilaginosa ATCC 25296] gi|255295908|gb|EET75249.1| phosphoribosylamine--glycine ligase [Rothia mucilaginosa ATCC 25296] Length = 427 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143 A+ L K +KQV+ VP + + + L PYV+K + G++V Sbjct: 96 AAQLEGSKAFAKQVMEEASVPTARAYVASNAAEAQAALDEFGAPYVVKDDGLAAGKGVVV 155 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + D++ L+ Q+ +N G ++IE+++DG E++ V+ D Sbjct: 156 TE-DRTAALEHAQAC-FNAGGTVVIEEFLDGPEVSLFVISD 194 >gi|282853025|ref|ZP_06262362.1| conserved domain protein [Propionibacterium acnes J139] gi|282582478|gb|EFB87858.1| conserved domain protein [Propionibacterium acnes J139] Length = 96 Score = 37.0 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GISR D + D R VF LE PGMT S+ P AG E+ +V+D + Sbjct: 38 GISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 92 >gi|297538643|ref|YP_003674412.1| cyanophycin synthetase [Methylotenera sp. 301] gi|297257990|gb|ADI29835.1| cyanophycin synthetase [Methylotenera sp. 301] Length = 720 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGI- 141 +A +S DK +KQ++ +CGVPV +V ++ I P V+KP G G+ Sbjct: 207 IAEGISRDKDLTKQLLQNCGVPVPEGRIVESPEDAWEAAEDIGLPVVVKPSDGNHGRGVS 266 Query: 142 --IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + D L G ++++E+++ G E Sbjct: 267 TELMTRVDVEAAFKLADE----EGSEVIVERFIRGNE 299 >gi|302534518|ref|ZP_07286860.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C] gi|302443413|gb|EFL15229.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C] Length = 714 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136 G ASA+S+ DK+ +K+ V + GVPV P S L + + I P ++KP GG Sbjct: 104 GPPASAISLMGDKITAKETVRAAGVPVVPGSSGSGLTDAELAAAASEIGMPVLLKPSAGG 163 Query: 137 SSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD 173 G+ +++ + + ++ ++ S D LL+E+++D Sbjct: 164 GGKGMRLVRDEALLAEEIAAARREAKSSFGDDTLLVERWID 204 >gi|291557897|emb|CBL35014.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Eubacterium siraeum V10Sc8a] Length = 325 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 27/192 (14%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK + ++ +P LV T D+ + P V+KP++G S G++ P Sbjct: 113 DKFSTNTLLLQNELPAVTDYLV---TADTVYNGEYPCVLKPIRGRGSQGVVKC----DTP 165 Query: 152 LDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELK 205 + +++ +S +GD ++ E+Y+ G E+T V D SL E K+ Y Sbjct: 166 EEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFIERFDQKNGIAPYNGD 225 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLA--FLAHQA---IGCRGISRSDFLFDPLSRKVFWL 260 + ++ V+ L ++ LA L +A I CR +F K+F Sbjct: 226 VPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVRIDCRADKNGNF-------KMF-- 276 Query: 261 EINVQPGMTPVS 272 + N +P +T S Sbjct: 277 DFNPKPNLTGAS 288 >gi|94309649|ref|YP_582859.1| cyanophycin synthetase [Cupriavidus metallidurans CH34] gi|93353501|gb|ABF07590.1| cyanophycin synthetase [Cupriavidus metallidurans CH34] Length = 883 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 + ++S DK +K ++ SCGVPV +V D+ I P V+KP G G+ Sbjct: 212 IGESISRDKDLTKSLLESCGVPVPEGRMVESAEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ +++ ++ + + G +++E++V G E Sbjct: 272 TNLMTREE---VETAYAVAIEEGSGVIVERFVPGNE 304 >gi|308063998|gb|ADO05885.1| phosphoribosylamine--glycine ligase [Helicobacter pylori Sat464] Length = 424 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 18/128 (14%) Query: 64 EDGLVQAILELLEIPYTHSGIL-------ASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 E+ L+ + E+LE +GIL A+ L K K V CG+ N Sbjct: 75 EELLILGLTEMLE----KAGILVFGASKEAAKLETSKSYMKAFVKECGIKSASYFEANNL 130 Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 H+ S P VIK L +S I Q L +L+ + + D ++IE +++G Sbjct: 131 KEALNHIQNASFPLVIKALNKNTS-----IVHHQEEALKILEDAFKQNNDPVIIEPFLEG 185 Query: 175 IELTCGVM 182 EL+ + Sbjct: 186 FELSVTAL 193 >gi|189346885|ref|YP_001943414.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium limicola DSM 245] gi|189341032|gb|ACD90435.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium limicola DSM 245] Length = 485 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 31/220 (14%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKK 146 DK+ SK++ VP P I T + + + P +IK GG G++ + Sbjct: 118 DKIESKKIAKEARVPTIPGINSPNTTEEIRRWMQEEDVVFPIIIKASSGGGGKGMVRVGN 177 Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201 D + L Q+ S D++L+E++++ G + ++ D +V + Y Sbjct: 178 DTELETALAQARSEAKKSFGNDEILVEKFIEKGKHIEVQIIADQHGNVLHL-------YD 230 Query: 202 YELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E N + A P + + A + IG +FL D + K + Sbjct: 231 RECTLQRRNQKVIEEAPSPSLDEETRNSICETAVRLMRTIGYSSAGTVEFLLDAATGKFY 290 Query: 259 WLEIN----VQPGMTP-------VSIFPEMAAYAGYSFRE 287 +LE+N V+ G+T VS+ ++A SFR+ Sbjct: 291 FLEVNTRLQVEHGITELVTGVDIVSLMLDIAQGEPLSFRQ 330 >gi|329962783|ref|ZP_08300684.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057] gi|328529438|gb|EGF56346.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057] Length = 371 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/87 (20%), Positives = 44/87 (50%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K ++ +++ G+ I+V+ I P ++KP+ G S G+ + + + Sbjct: 102 NKFTMREALNAAGISNPQYIIVSEVEELDSVNIPFPCIVKPVDSGGSQGVTKVGSLEEVK 161 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELT 178 +++ ++ +++IEQY+DG E + Sbjct: 162 AAFIRALDYSREGKVIIEQYIDGREFS 188 >gi|327355154|gb|EGE84011.1| Carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces dermatitidis ATCC 18188] Length = 670 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 14/115 (12%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 A + DK+++K++ +CGVP+ ++ L++RF + + P ++K + GG Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192 GI +K + L +++ + ++ +E+ G + ++GD + +V + Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGEVRHL 226 >gi|239615469|gb|EEQ92456.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces dermatitidis ER-3] Length = 671 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 14/115 (12%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 A + DK+++K++ +CGVP+ ++ L++RF + + P ++K + GG Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192 GI +K + L +++ + ++ +E+ G + ++GD + +V + Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGEVRHL 226 >gi|296120555|ref|YP_003628333.1| hypothetical protein Plim_0283 [Planctomyces limnophilus DSM 3776] gi|296012895|gb|ADG66134.1| protein of unknown function DUF201 [Planctomyces limnophilus DSM 3776] Length = 360 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 106/273 (38%), Gaps = 58/273 (21%) Query: 65 DGLVQAILELLEI--PYTHSGILAS-ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 DG + AI++L E H+ A+ L+ DK++ + + +P P+ LV Sbjct: 103 DGTLAAIIQLCEFLGARVHNSTSAAIQLTSDKLQLAEHLEKHRIPTIPTRLVQHAEELGT 162 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H YV+KP+ G SL + V+ + P + Q +++ Y+ G + Sbjct: 163 H---SRYVVKPIDGAGSLDVFVVNDWREAPETETCQ----------IVQPYLRGRSASVA 209 Query: 181 VMGDASLDVTE---------------------IAVPKSDFYSYELKYSSLNSTHVLPAKI 219 V+ A +DV I P LKY + Sbjct: 210 VIMPALVDVENRDSSGQSSMASIVWPAASQRIIESPGEGHLPASLKYQG--------GAL 261 Query: 220 PLDIYKEVQR-----LAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-- 271 P D + +R LA A Q+I G RG + D ++ S + +EIN + M+ + Sbjct: 262 PADEFSPEERATLEALALKACQSIEGLRGYTGVDLVWPEESAEPLVVEINPRLCMSYLGY 321 Query: 272 -SIFPEMAA--YAGYSFRELLLWM-VEDASCLR 300 IF AA AGYS ++ +D +C + Sbjct: 322 RQIFGPQAALVVAGYSEAAAMVETSADDGACWK 354 >gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10] gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10] Length = 893 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSL 139 S +A ++ DK +K+++ VPV I+V + ++ ++ P VIKP+ Sbjct: 204 SSCIAVDIASDKQMTKKLLMDNNVPVPCGIVVRTEQEAFEAVEMVGYPLVIKPIDSNQGK 263 Query: 140 GIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 G+ V I + I ++ ++ ++++E+YV G + V+GD V E P+ Sbjct: 264 GVTVNISTEDKIRAAYSEARKYSR--KVIVEKYVCGKDYRVLVVGDKVCAVAERRPPR 319 >gi|14030855|gb|AAK53061.1| nikkomycin biosynthesis protein SanS [Streptomyces ansochromogenes] Length = 424 Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 23/188 (12%) Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GE +++A E+ + ++ DK K +++ G+ V P + +F D Sbjct: 83 SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAP---MRKFRTDD 139 Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG- 174 + P V+K L G+S G +V+ ++ DL L E +V+G Sbjct: 140 DLAGFAWDVGFPVVVKELDSGASNGTVVLMDEE----DLRALPERATAAPRLAEAWVEGD 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G+M D + +AVP + YS + + Y + T ++P PL +RL Sbjct: 196 FYHVNGLMKDGEV---VLAVPSRNLYSDWFSVAYDAPTMTGMMPDDHPLS-----ERLRG 247 Query: 233 LAHQAIGC 240 A Q + Sbjct: 248 TARQVVAA 255 >gi|289209696|ref|YP_003461762.1| hypothetical protein TK90_2536 [Thioalkalivibrio sp. K90mix] gi|288945327|gb|ADC73026.1| protein of unknown function DUF201 [Thioalkalivibrio sp. K90mix] Length = 359 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKD 147 DK ++ + + G+P CP L D +HL ++ P V+KPL G SS GII K+ Sbjct: 123 DKWAFQRFMETHGIP-CPKALRLEGPDDLKHLQDGGMTFPLVVKPLYGESSHGIIQAKRL 181 Query: 148 QSIPLDLLQSSSWNHGD-QLLIEQYVDGIE 176 + I L + H L++++Y G + Sbjct: 182 EDIEAHLARGG--RHAQFPLVVQEYAPGFD 209 >gi|159036239|ref|YP_001535492.1| phosphoribosylglycinamide synthetase [Salinispora arenicola CNS-205] gi|157915074|gb|ABV96501.1| phosphoribosylglycinamide synthetase [Salinispora arenicola CNS-205] Length = 420 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 19/117 (16%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----------WNHGDQLLIEQYVD 173 I P VIKP S GI ++ D+ + + Q G + ++E+Y++ Sbjct: 144 IGLPAVIKPTGASGSKGIFELRDDEDLEAAVEQLEKIARPQFDAVFQQFGAEFIVEEYLE 203 Query: 174 GIELTC-GVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL+ G++ V + S Y EL+ HV+P+ +P D+ EVQ Sbjct: 204 GEELSVEGLIAGGEPHVVMVTDKLTSAPYHLELQ-------HVMPSALPSDVLAEVQ 253 >gi|157736856|ref|YP_001489539.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter butzleri RM4018] gi|315636024|ref|ZP_07891283.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri JV22] gi|157698710|gb|ABV66870.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter butzleri RM4018] gi|315479680|gb|EFU70354.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri JV22] Length = 483 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 22/187 (11%) Query: 92 DKMRSKQVVSSCGVPVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 DKM SK + GVPV P I + ++ I P +IK GG G+ ++++ Sbjct: 116 DKMASKVAMKKVGVPVLEGTDEPIIDIEEGAKIAKQ-IGFPVIIKAAFGGGGRGMRIVRE 174 Query: 147 DQSIPLDLLQSSS------WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199 ++ +L +S+S + G + IE+YV+ + V+ D +V + Sbjct: 175 EKDFK-ELFESASNEAKKYFGRG-EAFIEKYVENPRHIEIQVIADKYGNVLHLGERDC-- 230 Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 S + ++ + + P+ ++ + KE+ R+A A +G + +FL DP ++ Sbjct: 231 -SIQRRHQKV--IEIAPSPRLNNEARKELYRIATKAMFKLGYESVGTVEFLLDP-DDNIY 286 Query: 259 WLEINVQ 265 ++E+N + Sbjct: 287 FIEMNTR 293 >gi|226286959|gb|EEH42472.1| RNA binding protein [Paracoccidioides brasiliensis Pb18] Length = 582 Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG G I+E+L P T S +L ++D ++ +S PV PS L+ + Sbjct: 156 NALHGKLNSTGETNLIVEILNTPST-SALLGRRNTIDHASNRAAPNSASQPVAPSALIRQ 214 Query: 116 FTM 118 ++ Sbjct: 215 TSL 217 >gi|225683351|gb|EEH21635.1| RNA-binding protein Scw1 [Paracoccidioides brasiliensis Pb03] Length = 594 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG G I+E+L P T S +L ++D ++ +S PV PS L+ + Sbjct: 167 NALHGKLNSTGETNLIVEILNTPST-SALLGRRNTIDHASNRAAPNSASQPVAPSALIRQ 225 Query: 116 FTM 118 ++ Sbjct: 226 TSL 228 >gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110] gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110] Length = 855 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--- 122 G Q ++ E+ T SG+ A +++ DK +KQ++++ GVPV + R D+Q Sbjct: 180 GSKQRRIQAAEVDST-SGV-AESIAQDKELTKQLLNAAGVPVP----LGRPVSDAQDGWA 233 Query: 123 ---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P V+KP G G+ V Q L S+ +G ++++E+++ G + Sbjct: 234 AAMEIGLPVVVKPQDGNQGKGVTVNITTQE-QLTAAYDSAAAYG-EVMVEKFLPGFDFRL 291 Query: 180 GVMGD 184 V+GD Sbjct: 292 LVVGD 296 >gi|308048935|ref|YP_003912501.1| GNAT family acetyltransferase [Ferrimonas balearica DSM 9799] gi|307631125|gb|ADN75427.1| GNAT-family acetyltransferase TIGR03103 [Ferrimonas balearica DSM 9799] Length = 579 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 12/108 (11%) Query: 85 LASALSMDKMRSK----QVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGG 136 L SA++M + +K ++++ G+ V +N + QH P V+KP +G Sbjct: 317 LTSAIAMTRCDNKDLTHRLLAKAGLKVPTQKTINNASEAIAFWRQH---GPMVLKPARGE 373 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 G+ V +++ D Q +S G LL EQY++G +L V+GD Sbjct: 374 QGNGVFVDLRNEQAIHDAYQQASALEG-PLLAEQYIEGQDLRILVIGD 420 >gi|302898963|ref|XP_003047952.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI 77-13-4] gi|256728884|gb|EEU42239.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI 77-13-4] Length = 1841 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 38/183 (20%), Positives = 86/183 (46%), Gaps = 15/183 (8%) Query: 93 KMRSKQVVSSCGVPV---CPSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K R++ + + GVP C S+L + ++ I P ++K GG +G+ K + Sbjct: 758 KHRARAIAADAGVPNVPGCDSLLTSLEEALEEGQKIGFPLMLKSTAGGGGIGLSHCKDVE 817 Query: 149 SIPL---DLLQSSSWNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 S+ + + ++ N G+ + +E++V + ++GD + V IA + D Sbjct: 818 SLATTFESVRRQATANFGNGGVFLERFVQRARHVEVQILGDGTGKV--IAAGERDC---S 872 Query: 204 LKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 L+ PA +P+++ ++++ A ++ R + +F++D + + F+LE+ Sbjct: 873 LQRRHQKVVEESPAIMVPVEVREKMKAAAASLASSVKYRNVGTVEFIYDIDTEEFFFLEV 932 Query: 263 NVQ 265 N + Sbjct: 933 NTR 935 >gi|238061489|ref|ZP_04606198.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora sp. ATCC 39149] gi|237883300|gb|EEP72128.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora sp. ATCC 39149] Length = 690 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DKM +K +++ GVP+ P+ D+ + + P ++K GG G+ ++ + Sbjct: 144 DKMAAKALLADAGVPMLPTW------TDTAEITAFPVLVKASTGGGGRGMRIVSDPAGLA 197 Query: 152 ---LDLLQSSSWNHGD-QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + ++ GD + +E+YV+ G + V GD+ V +A+ + D S + ++ Sbjct: 198 EAVASARREAAAAFGDGTVFVERYVERGRHVEVQVFGDSHGTV--LALGERD-CSIQRRH 254 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + PA +P + + + A A +A+G G +FL P + F+LE+N + Sbjct: 255 QKI--VEEAPAVLPDGVRQRLHAAAVAAARAVGYVGAGTVEFLLAP-DGEFFFLEMNTR 310 >gi|113475694|ref|YP_721755.1| SSU ribosomal protein S6P modification protein [Trichodesmium erythraeum IMS101] gi|123352344|sp|Q113P2|RIMK_TRIEI RecName: Full=Ribosomal protein S6 modification protein gi|110166742|gb|ABG51282.1| SSU ribosomal protein S6P modification protein [Trichodesmium erythraeum IMS101] Length = 299 Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 22/200 (11%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134 +T + LA + S DK+ Q+++ G+ + P FT D LI+ P VIK L+ Sbjct: 86 FTANPSLAISRSRDKLHCLQLLAREGIEL-PVTSFAHFTKDINSLINTVGGAPLVIKLLE 144 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191 G +G+++ + Q + S N L++++++ G ++ C V+GD + + Sbjct: 145 GSQGIGVVLAETYQVAKSVIEAFSGLNA--NFLVQEFIEEAGGADVRCFVVGDRVIAAIK 202 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + +F S + + + P + + +A + +AIG + ++ D L Sbjct: 203 RQGTEGEFRSNLHQGGTAKKIKLTPQE---------RSIAMRSAKAIGLK-VAGVDLLRS 252 Query: 252 PLSRKVFWLEINVQPGMTPV 271 V +E+N PG+ + Sbjct: 253 DHGPVV--MEVNSSPGLEGI 270 >gi|333031058|ref|ZP_08459119.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis DSM 18011] gi|332741655|gb|EGJ72137.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis DSM 18011] Length = 371 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 14/165 (8%) Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 CP + + + P +IKP S G+ + + + + + + S ++ ++L Sbjct: 115 CPQPHFEILNESTYSIDTFPVIIKPSDSSCSNGVSKVTCQEELDVAIRNAFSASNQHEVL 174 Query: 168 IEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +E+Y++G E++ + + L +T+ + + + + H P+++ LD+ Sbjct: 175 VEEYIEGKEISVESISFHNKHYILTITDKETTGAPHF--------VETAHHQPSQLNLDL 226 Query: 224 YKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPG 267 K+++ AIG G + S+F D V+++E+ + G Sbjct: 227 QKKIKTYTNNILNAIGISNGAAHSEFKIDA-DGNVYFIEVGARGG 270 >gi|319898970|ref|YP_004159063.1| Biotin carboxylase [Bartonella clarridgeiae 73] gi|319402934|emb|CBI76485.1| Biotin carboxylase [Bartonella clarridgeiae 73] Length = 452 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 92 DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ +K+ V G+P+ P I + + I P +IK GG G+ V+ + Sbjct: 115 DKIEAKKTVKKLGIPIVPGSNEAIAEEEEALRIANEIGYPVIIKASAGGGGCGMKVVHSE 174 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200 + + + ++S+ + D + IE+Y++ IE+ V+GD + + + Sbjct: 175 RKLLIAFKTARSEASAAFNDDAVYIEKYLEKPRHIEIQ--VIGDGAGNAIHLGERDCSLQ 232 Query: 201 SYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 K + NS PA + K++ + A +G RG+ +FL++ + + ++ Sbjct: 233 RRHQKVWEEANS----PALNETE-RKKIGNVVANACAKLGYRGVGTVEFLYE--NGEFYF 285 Query: 260 LEINVQ 265 +E+N + Sbjct: 286 IEMNTR 291 >gi|159122515|gb|EDP47636.1| conserved hypothetical protein [Aspergillus fumigatus A1163] Length = 663 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185 P ++KP G SS G+ ++ + P + + HG + ++E Y DG E+ V+ D Sbjct: 356 PLIVKPCDGWSSEGVSRVESPDAFPAAIKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 415 Query: 186 SLDVTEIA--VPKS 197 + EI +PKS Sbjct: 416 EVLFAEICDDLPKS 429 >gi|15678762|ref|NP_275879.1| hypothetical protein MTH736 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621825|gb|AAB85240.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 338 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 19/196 (9%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 +P SG A+ +S DK ++K+ S + L++ + + P V+K +G Sbjct: 94 VPVVASGPEAAEISTDKFKTKEFFSRNRIRTPEYDLID----SPEDVTEMPVVLKQREGQ 149 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVM--GDASLDVTEIA 193 G++V + P D+ + + H D L+E+Y+ G E++ V+ D +L + +A Sbjct: 150 GGSGVMV----AATPSDVRE---YLHAHDHALMEEYIQGREISVEVLRWNDETLPL--VA 200 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V K D L L PA I E +A + +G G + D + Sbjct: 201 VDKGDTRMDGLH--PLRKVKRAPAIIRGFDGMEALAMASEVTELLGAEGNTDVDMIVSE- 257 Query: 254 SRKVFWLEINVQPGMT 269 K++ +E+N +P T Sbjct: 258 DGKLYAIEVNTRPSGT 273 >gi|148555411|ref|YP_001262993.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1] gi|148500601|gb|ABQ68855.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1] Length = 344 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 16/250 (6%) Query: 52 DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D F +L+ G + L+ + E IPY + + LS DK +K+V + G+P P Sbjct: 74 DFVFPLLNRGGFLNSEMLLPLLCERRGIPYLGASPILRGLSDDKHLAKRVAVARGLPTAP 133 Query: 110 SILVNRFTMDSQHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 L R L P +V+KP +S GI + + + + G ++ Sbjct: 134 WALFRRGAPIDLSLCPPAARHVVKPNASSASWGISAAHDLEDVRAAVARLH--KEGHDVI 191 Query: 168 IEQYVDGIELTCGVMG-DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP----AKIPLD 222 +E ++ G ++ V+ D + + + + D Y Y L +++ A PLD Sbjct: 192 VEPFIPGHDIEVSVITLDGEPFILPVQIVEQDDPGYLRTY--LEKRNLIDDQAYAIRPLD 249 Query: 223 ---IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + E R A + R +F + + + ++E+N+ + AA Sbjct: 250 DDRLRIEATRQAIEMMKEFLPFDYGRFEFRLNAATGALSFMEVNLNCNLWSRKTIAMAAA 309 Query: 280 YAGYSFRELL 289 G+S EL+ Sbjct: 310 QIGWSHAELI 319 >gi|224477643|ref|YP_002635249.1| hypothetical protein Sca_2159 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422250|emb|CAL29064.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 369 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%) Query: 32 KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS- 90 K +QID SVG DLA V + E L++P+ S A A + Sbjct: 61 KDNQIDAVYSVG-------SDLAMPV----------ANKLSETLDLPHFVSYETAYACNH 103 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D+MR + + VP + D Q I P +KP G GI +++ +++ Sbjct: 104 KDEMRQRTKGIAGSVPFEITQ-----EADFQTEIDFPVFVKPTDGQGQRGISLVETKEAL 158 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVT 190 P + ++ + +IE+Y+DG E++ G + D L T Sbjct: 159 PEAIRKAIENSREGSAIIERYIDGYEISVNGYVVDGKLQFT 199 >gi|149913000|ref|ZP_01901534.1| Carbamoyl-phosphate synthase small chain [Roseobacter sp. AzwK-3b] gi|149813406|gb|EDM73232.1| Carbamoyl-phosphate synthase small chain [Roseobacter sp. AzwK-3b] Length = 381 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+ E L +P+ H + L DK + ++ + P V R +++ P Sbjct: 81 VVALSERLGLPHFHDSAFVALLD-DKAAMRAFLAEHELGAVPFRRVRRLE-EAEGWRQFP 138 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 V+KP+ G+ + + ++ L+++ + + +IE ++DG+EL+C ++ Sbjct: 139 CVVKPVDAQGQRGVERVDEPGALAAALVRAMAVSRSGCAIIEAFLDGVELSCNLL 193 >gi|10639829|emb|CAC11141.1| NikS protein [Streptomyces tendae] Length = 424 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 17/185 (9%) Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTM 118 + GE +++A E+ + ++ DK K +++ G+ V P N Sbjct: 83 SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAPMRKFRTNDDLA 142 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 + + P V+K L G+S G +V+ ++ DL L E +V+G Sbjct: 143 EFAWKVGFPVVVKELDSGASNGTVVLMDEE----DLRALPERATAAPRLAEAWVEGDFYH 198 Query: 178 TCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G+M D + +AVP + YS + + Y + T ++P PL +RL A Sbjct: 199 VNGLMKDGEV---VLAVPSRNLYSDWFSVAYDAPTMTGMMPDDHPLS-----ERLRSTAR 250 Query: 236 QAIGC 240 Q + Sbjct: 251 QVVAA 255 >gi|30248926|ref|NP_840996.1| putative cyanophycin synthetase [Nitrosomonas europaea ATCC 19718] gi|30138543|emb|CAD84833.1| putative cyanophycin synthetase [Nitrosomonas europaea ATCC 19718] Length = 768 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 21/110 (19%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSS 138 +A +S DK +K ++ +CGVPV R D + I P VIKP G Sbjct: 230 IAENISRDKELTKSLLRACGVPVPEG----RIVTDPADAWLAAEDIGLPVVIKPGDGNHG 285 Query: 139 LGIIVIKKDQ-----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 G+ + ++ + P+ L + G +L+E+Y+ GIE ++G Sbjct: 286 RGVFIELSNREEIEAAFPIALQE------GSDVLVERYIPGIEHRLLIVG 329 >gi|255712697|ref|XP_002552631.1| KLTH0C09438p [Lachancea thermotolerans] gi|238934010|emb|CAR22193.1| KLTH0C09438p [Lachancea thermotolerans] Length = 353 Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%) Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS---RSDFLFDPLSRKVFW 259 + K S+++ +V PL + K +LA+ + + G+S +SDF PL+R+V Sbjct: 175 QAKKSTVSRQYVPDEPTPLSLLKYAPKLAYSSSSKMSSFGVSTLDQSDF---PLTRRVN- 230 Query: 260 LEINVQPGMTP--VSIFPEMAAYAGYSFRELLLWMVE 294 L + P P VS+ P AA+ Y+ L+W E Sbjct: 231 LGVATSPSQKPLNVSLSPRTAAFGQYAPASSLVWCKE 267 >gi|317154409|ref|YP_004122457.1| D-alanine--D-alanine ligase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944660|gb|ADU63711.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 337 Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 13/168 (7%) Query: 26 LEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGED---GLVQAILELLEIPY 79 L + G+ V ++++ +G ++ L +P + FN++ D L I L +P+ Sbjct: 34 LRELGWSVVEVELGSDLGEAVSTLQGIRPGVVFNLVESIMDSDELANLTPVIFRKLGLPF 93 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSS 138 T + L+ DK+ +K+ + S G+P V+ + P Y++K +S Sbjct: 94 TGADSSVLFLTNDKLAAKRHMQSVGLPTPAG--VDETGLKRGRFPGPGRYIVKSRCEHAS 151 Query: 139 LGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 LG+ +V K L + + G L E+++DG E + ++ Sbjct: 152 LGLDETSVVNVKTADELLAAMAARRHKLGGSCLAERFIDGREFSVSLL 199 >gi|260220382|emb|CBA27866.1| Cyanophycin synthetase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 602 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 13/125 (10%) Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123 G Q ++ E+ T + +A A++ DK +K+++S+ GVPV S++ + Sbjct: 167 GSKQRRIQAAEMDVTSA--IAEAIAQDKELTKKLLSAAGVPVPGGRSVIDAEDAWAAAQE 224 Query: 124 ISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTC 179 I P V+KP G G+ V K+Q LL+ + + D +L+E+++ G + Sbjct: 225 IGLPVVVKPNDGNQGKGVTVNITSKEQ-----LLKAFAVAKEFRDDILVERFMPGNDFRL 279 Query: 180 GVMGD 184 V+GD Sbjct: 280 LVVGD 284 >gi|70984449|ref|XP_747731.1| conserved hypothetical protein [Aspergillus fumigatus Af293] gi|66845358|gb|EAL85693.1| conserved hypothetical protein [Aspergillus fumigatus Af293] Length = 574 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185 P ++KP G SS G+ ++ + P + + HG + ++E Y DG E+ V+ D Sbjct: 267 PLIVKPCDGWSSEGVSRVESPDAFPAAVKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 326 Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTH----VLPAKIP 220 + EI +PKS + L SL + H V P+ +P Sbjct: 327 EVLFAEICDDLPKSADVN-GLTVGSLTNFHELYSVYPSALP 366 >gi|325285852|ref|YP_004261642.1| ATP-grasp fold domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321306|gb|ADY28771.1| ATP-grasp fold domain protein, DUF201-type [Cellulophaga lytica DSM 7489] Length = 347 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 40/171 (23%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMG 183 P V+KP++G S G+ ++K ++ + L SS S +G + +EQ++ G E+T VM Sbjct: 148 PIVVKPIRGRGSQGVSLVKNEKELNAKL--SSLFLSKQYGTSVYLEQFLSGQEITITVMP 205 Query: 184 DASLDV--------TEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLD-----------I 223 S + T +P ++++ + N T V+ LD + Sbjct: 206 SGSYIINNNKKQFTTAWCLPPVKRFNHQNGIAPYNGTVAVIKNSALLDNSERNSNQIIAV 265 Query: 224 YKEVQRLAFLAHQA----IGCRGISRSD-FLFDPLSRKVFWLEINVQPGMT 269 K+ ++ A L H I CR + + +LFD +N++P MT Sbjct: 266 CKQCEKAAELLHIKAPIRIDCRADEKGNYYLFD----------VNMKPNMT 306 >gi|242790098|ref|XP_002481495.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Talaromyces stipitatus ATCC 10500] gi|218718083|gb|EED17503.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Talaromyces stipitatus ATCC 10500] Length = 696 Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 19/186 (10%) Query: 92 DKMRSKQVVSSCGVPVCPSIL-VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-- 145 DK RSK+++++ GVP P N+ F + P +IK +KGG G+ +++ Sbjct: 150 DKSRSKKIMTAAGVPCVPGYHGTNQDPLFLESEADKMQYPVLIKAVKGGGGKGMRIVRSK 209 Query: 146 ---KDQ--SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199 +DQ S ++ L S +H +L+E+Y+ + V D + +A+ + D Sbjct: 210 TEFQDQLRSAKMEALNSFGNDH---MLVEKYITTPRHIEVQVFADKHGNC--VALGERD- 263 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S + ++ + P +P + K++ A A A+G G +F+FD + ++ Sbjct: 264 CSIQRRHQKILEESPAP-HLPDSVRKDLWEKARAAALAVGYEGAGTVEFIFDNDTGNFYF 322 Query: 260 LEINVQ 265 +E+N + Sbjct: 323 MEMNTR 328 >gi|183220927|ref|YP_001838923.1| hypothetical protein LEPBI_I1540 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911023|ref|YP_001962578.1| biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775699|gb|ABZ94000.1| Biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779349|gb|ABZ97647.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 400 Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 ++ L +DK + K VVS G+PV SI L T D + + P + KP +G GI V Sbjct: 104 STNLFLDKEKFKLVVSKYGIPVPKSIPNLGTNKTKDKKPELLFPIIAKPKEGSGKKGISV 163 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + ++ + + + L+E Y G E+T Sbjct: 164 LESE----VEYKKFTKSRIHESFLLETYTPGDEVTV 195 >gi|145250613|ref|XP_001396820.1| pyruvate carboxylase [Aspergillus niger CBS 513.88] gi|134082342|emb|CAK42357.1| unnamed protein product [Aspergillus niger] Length = 650 Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%) Query: 46 LAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 L L D A + +H +G E A ++ I G + + DK+++KQ+ Sbjct: 70 LVRLAQDNAIDAIHPGYGFLSESADFAARMQDAGITVIGPGSSVLSRTGDKLQAKQLAVE 129 Query: 103 CGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 C VPV P++ V F Q+ P ++K + GG GI ++ D+ + Sbjct: 130 CDVPVLPAMAQPTADVAEVRAFVKQVQY----PVMVKAVDGGGGRGIRLVYGDEGL 181 >gi|325093888|gb|EGC47198.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Ajellomyces capsulatus H88] Length = 1276 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 13/183 (7%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK RSK+++++ GVP P + +M+ P +IK +KGG G+ + Sbjct: 709 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKTKFPVLIKAVKGGGGKGMRIASSK 768 Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ L+ + S D +L+E+Y+ + V D + + Sbjct: 769 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 828 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K + LP DI+ + + A A+G G +F+FD + + F++E+ Sbjct: 829 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 884 Query: 263 NVQ 265 N + Sbjct: 885 NTR 887 >gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052] gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052] Length = 880 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 89 LSMDKMRSKQVVSSCGVPVCP-SILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +S DK+ +KQ++ + +PV S ++N + I P V+KP G G+I+ K Sbjct: 210 ISCDKLLTKQLLQTQNIPVADGSKVLNLIGLLQEAERIGYPVVLKPQCGNKGQGVILNIK 269 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 DQ +D + N D +++E+Y +G Sbjct: 270 DQKQLVDAYINLRKNQKD-IILEKYFEG 296 >gi|91787311|ref|YP_548263.1| cyanophycin synthetase [Polaromonas sp. JS666] gi|91696536|gb|ABE43365.1| Cyanophycin synthetase [Polaromonas sp. JS666] Length = 743 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142 +A ++ DK +K ++++CGVPV +V+ ++ I P V+KP G G + Sbjct: 216 IAEGIAHDKDLTKSLLATCGVPVPDGEIVSTAERAWEAAQDIGLPVVVKPSDGNHGRG-V 274 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + + ++ + HG ++++E+++ G E V+G Sbjct: 275 SLDLNTREEVEAAFRVAEPHGSEVMVERFIRGHEHRLLVVG 315 >gi|295395551|ref|ZP_06805745.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971570|gb|EFG47451.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC 49030] Length = 650 Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 83 GILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGG 136 G ASA+ DK+ +KQ V+S GVP+ P + + + D + P +IKP GG Sbjct: 104 GPTASAIRTMGDKITAKQAVASRGVPLVPGVAESGLSNDQLEKAALDVGMPVLIKPSAGG 163 Query: 137 SSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYV 172 G+ + K + + L +++S D L +E+ + Sbjct: 164 GGKGMHAVFKQEDLRESLEAARREAASSFGDDTLFLERLI 203 >gi|218437612|ref|YP_002375941.1| glutathione synthase [Cyanothece sp. PCC 7424] gi|218170340|gb|ACK69073.1| Glutathione synthase [Cyanothece sp. PCC 7424] Length = 622 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 97 KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL- 152 K +++CG PV +V R ++S + P V+KP+ G +G+ I+ D+ + Sbjct: 206 KGFLANCGFPVPQGYVVYSLREALNSAEDLGYPVVVKPVIGHKGIGVTANIENDKELEFA 265 Query: 153 -DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 D +S N Q+++E+Y+ G + +G Sbjct: 266 YDRAVDASPNQRGQIIVEKYIPGADFRLLCVG 297 >gi|166363988|ref|YP_001656261.1| ribosomal protein S6 modification protein [Microcystis aeruginosa NIES-843] gi|166086361|dbj|BAG01069.1| ribosomal protein S6 modification protein [Microcystis aeruginosa NIES-843] Length = 301 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 43/280 (15%) Query: 12 REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN--------------V 57 ++ SL S K A E G +V I+ R + +H KP + +N Sbjct: 8 QDASLYSTKRLKEAGEAQGHEVRVINYLRCYMNITSH-KPTVVYNGKPLESFDAIIPRIA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 F +V+ E++ + +T + A + S DK+R Q+++ G+ + P + T Sbjct: 67 ASKTFYGTAVVRQ-FEVMNV-FTANDSQAISRSRDKLRCLQILAREGIGL-PVTGIAHAT 123 Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171 D LI P VIK L+G +G+++ + DQ+ ++ + N +L+++Y Sbjct: 124 QDIDGLIETVGGTPLVIKLLEGTQGIGVVLAETDQAAKSVIEAFRQLEAN----ILVQEY 179 Query: 172 VD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G +L C V+ + + + DF S + + P E + Sbjct: 180 IKEASGADLRCFVIDGKVVASMKRQGAEGDFRSNLHRGGKAEKVKLTP---------EER 230 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 A A +A+G R ++ D L + +E+N PG+ Sbjct: 231 STAIRATKAMGLR-VAGVDLLRS--NHGPVVIEVNSSPGL 267 >gi|319400937|gb|EFV89156.1| biotin carboxylase [Staphylococcus epidermidis FRI909] Length = 452 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK- 146 DK+ ++Q V GVPV P ++D L++ P V+K GG GI ++K+ Sbjct: 114 DKITARQTVKQAGVPVIPGSNDAVQSVDEIKLLAKEIGFPVVLKVASGGGGKGIRIVKEA 173 Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV 172 DQ++ + + + D++ +E ++ Sbjct: 174 SQLDQALKEAKSEGQKYFNDDRVYVEAFI 202 >gi|254465300|ref|ZP_05078711.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] gi|206686208|gb|EDZ46690.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] Length = 303 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 31/239 (12%) Query: 50 KPDLAFNVLHG---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +P L FN++ + V +LE IPYT A ++ K K +++ G+P Sbjct: 27 RPGLVFNLVEAIDRDMERAAEVLPLLEEEGIPYTGCSAAAQLATLSKTAQKCLMTRHGLP 86 Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHG 163 + +I +K + +SLG+ V+ Q+ + + +G Sbjct: 87 TPDWPQAGPALVQLGRVI-----VKSITEHASLGMDAQSVVPGSQAA--EEITRRQTRYG 139 Query: 164 DQLLIEQYVDGIE-----LTCG----VMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTH 213 E+Y++G E L CG V+ A + + Y K+ + +S H Sbjct: 140 GTFFAEEYIEGREFNLSLLECGTGVRVLPPAEILFEDFEPGAPRIVDYAAKWDDTAHSYH 199 Query: 214 VLPAK--IPLDIYKEVQRLAFLAH---QAIGCRGISRSDFLFDPLSRKVFW-LEINVQP 266 P + P + RLA LA Q G G +R DF D R W LE+N P Sbjct: 200 HTPRRFTFPDRDSALLSRLAELAQRIWQVFGLSGYARVDFRVDEGGRP--WILEVNTNP 256 >gi|52785752|ref|YP_091581.1| hypothetical protein BLi01996 [Bacillus licheniformis ATCC 14580] gi|163119460|ref|YP_079165.2| hypothetical protein BL05185 [Bacillus licheniformis ATCC 14580] gi|319645669|ref|ZP_07999900.1| hypothetical protein HMPREF1012_00934 [Bacillus sp. BT1B_CT2] gi|52348254|gb|AAU40888.1| hypothetical protein BLi01996 [Bacillus licheniformis ATCC 14580] gi|145902967|gb|AAU23527.2| hypothetical protein BL05185 [Bacillus licheniformis ATCC 14580] gi|317392216|gb|EFV73012.1| hypothetical protein HMPREF1012_00934 [Bacillus sp. BT1B_CT2] Length = 478 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 LV+ FT+D L Y++ LK G S+G+I +K I ++++Q Q LI QY Sbjct: 12 LVSNFTIDKSKLKQSQYMLSLLKEGQSVGVITSEKAYKIQVEIMQIL------QRLIGQY 65 Query: 172 VDG 174 G Sbjct: 66 TKG 68 >gi|110597169|ref|ZP_01385458.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341360|gb|EAT59825.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium ferrooxidans DSM 13031] Length = 397 Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHL--ISPPYVIKPLKG 135 ++ + A+ +S++K +Q + G+ V P+ + RF ++ +H I P VIKP+ Sbjct: 92 FSSISVEAADVSVNKWLQRQRMKEAGLSV-PAFMPFRFPDEAARHAAEIGFPVVIKPIDS 150 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 S G+ ++ + + ++ + L+E+YV+G+E++ Sbjct: 151 AGSRGVRFVRSAEEVMQAATEALDASRSKIGLVEEYVEGLEVS 193 >gi|319405739|emb|CBI79362.1| Biotin carboxylase [Bartonella sp. AR 15-3] Length = 452 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 19/218 (8%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114 +G E+ +LE I + + DK+ +K+ G+PV P +I+ Sbjct: 82 YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKDLGIPVVPGSNEAIVEE 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170 + + + I P +IK GG G+ V+ +Q + L + S + D + IE+ Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVVHSEQKLLTALKTARSEANAAFNDDSVYIEK 201 Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++ IE+ V+GD + + + K ++ VL K++ Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNAIHLGERDCSLQRRHQKVWEEATSPVLNET----ERKKI 255 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + A + RG +FL++ + + +++E+N + Sbjct: 256 GNIVANACAKLRYRGAGTIEFLYE--NGEFYFIEMNTR 291 >gi|149200147|ref|ZP_01877171.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Lentisphaera araneosa HTCC2155] gi|149136788|gb|EDM25217.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Lentisphaera araneosa HTCC2155] Length = 372 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 15/176 (8%) Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+ KQ + G+ P+ + T D+ P V K KGG +++ KD+S Sbjct: 100 DKLLQKQCIEEAGLST-PAFI--ELTEDADFAKFGFPLVQKTRKGGYDGKGVLVMKDESA 156 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 ++ L + ++E+ VD +E+ GVM +D ++ P ++ +++ + + L+ Sbjct: 157 LVEKLPG-------ECMLEKMVD-LEMELGVMVARGIDGELVSYPVTEM-TFDDRSNILD 207 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ++PA+I D+ + + LA +A+G GI + D +VF E+ +P Sbjct: 208 LC-IVPARISADLEVKARTLAEKTIEALGGVGIYGVEMFVDKQG-EVFVNEVAPRP 261 >gi|119494142|ref|XP_001263981.1| hypothetical protein NFIA_007600 [Neosartorya fischeri NRRL 181] gi|119412143|gb|EAW22084.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181] Length = 663 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185 P ++KP G SS G+ ++ + P + + HG + ++E Y DG E+ V+ D Sbjct: 356 PLIVKPCDGWSSEGVSRVESPDAFPAAIKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 415 Query: 186 SLDVTEIA--VPKS 197 + EI +PKS Sbjct: 416 QVLFAEICDDLPKS 429 >gi|124010164|ref|ZP_01694822.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina ATCC 23134] gi|123983812|gb|EAY24229.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina ATCC 23134] Length = 664 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 13/182 (7%) Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPL--KGGSSLGIIVIKK 146 K +K ++ VPV P + ++ H I P ++K GG + I+ K Sbjct: 116 KSNAKTIMKQNEVPVIPGYQGADQSTETLSQAAHDIGFPVLLKATAGGGGKGMRIVHTAK 175 Query: 147 DQSIPLDLLQSSSWNH--GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + +D + + N D+L+IE+Y+ G + ++GD V I + + + Sbjct: 176 ELNGAIDAAKREAQNAFGNDELIIEKYIASGRHIEFQILGDQHGKVVHILEREC---TIQ 232 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 +Y + P P ++ +++ A A QA+ +F+FD S++ ++LE+N Sbjct: 233 RRYQKVIEESPSPVLTP-ELRQKMGEAALKAAQALNYDNAGTVEFIFDDQSQQFYFLEVN 291 Query: 264 VQ 265 + Sbjct: 292 TR 293 >gi|89075331|ref|ZP_01161753.1| putative ribosomal protein S6 modification protein [Photobacterium sp. SKA34] gi|89048880|gb|EAR54449.1| putative ribosomal protein S6 modification protein [Photobacterium sp. SKA34] Length = 271 Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 22/194 (11%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140 +A + S DK+RS Q++S GV + + ++ D LI P VIK L+G +G Sbjct: 63 IAISRSRDKLRSLQLLSRKGVGMPVTGFASKPD-DVPDLIKMVGGAPLVIKLLEGTQGIG 121 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197 +V+ + Q ++++ + +++++Y+ G ++ C V+GD + + + Sbjct: 122 -VVLAETQKAAESVIEAFMGLKAN-IMVQEYIKEAGGADIRCFVIGDKVIASMKRQAAEG 179 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +F S + S + + P E ++ A A +A+G ++ D L +R Sbjct: 180 EFRSNLHRGGSASLIRITP---------EERKTAIAAAKAMGL-SVAGVDLLRS--NRGP 227 Query: 258 FWLEINVQPGMTPV 271 +E+N PG+ + Sbjct: 228 LIMEVNSSPGLEGI 241 >gi|88855167|ref|ZP_01129832.1| putative acetyl-CoA carboxylase alpha subunit [marine actinobacterium PHSC20C1] gi|88815695|gb|EAR25552.1| putative acetyl-CoA carboxylase alpha subunit [marine actinobacterium PHSC20C1] Length = 675 Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 11/138 (7%) Query: 47 AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 AH + + +H +G E+ + I + G+ A + DK+ SK+ V+ Sbjct: 64 AHAVAGMNADAVHPGYGFLSENAQLAEACAAAGITFIGPGVEALEIMGDKIASKKHVTER 123 Query: 104 GVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQ- 156 GV V P I T D + + P +IKP GG G+ ++++ ++ LD + Sbjct: 124 GVAVIPGIAEPGMTNDDLVAAAAEVGFPLLIKPSAGGGGKGMTIVREPDAVAGALDSARR 183 Query: 157 -SSSWNHGDQLLIEQYVD 173 +S+ D L +E+ V+ Sbjct: 184 VASAAFGDDTLFLERLVE 201 >gi|317123313|ref|YP_004097425.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Intrasporangium calvum DSM 43043] gi|315587401|gb|ADU46698.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Intrasporangium calvum DSM 43043] Length = 1861 Score = 35.8 bits (81), Expect = 7.2, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 15/184 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+ SK + GVPV P + ++ I P ++K GG GI ++ D Sbjct: 126 DKIGSKLIAEEVGVPVAPWSRGGVDTLEEATEAAARIGYPLMLKATAGGGGRGIRKVESD 185 Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201 + ++ ++ G + +E+ V G + V+GD + V Sbjct: 186 AELTEAYERTRDEAARAFGSG-VVFLEKLVTGARHIEVQVIGDGQGTAWAVGVRDCSVQR 244 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 K +++ VL A ++ +RLA A+G G +FL+ P + +LE Sbjct: 245 RNQKVIEESASPVLSADEAAEVRTAAERLAV----AVGYAGAGTVEFLYHPAEKFFAFLE 300 Query: 262 INVQ 265 +N + Sbjct: 301 VNTR 304 >gi|261199396|ref|XP_002626099.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces dermatitidis SLH14081] gi|239594307|gb|EEQ76888.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces dermatitidis SLH14081] Length = 671 Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust. Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 14/115 (12%) Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 A + DK+++K++ +CGVP+ ++ L++RF + + P ++K + GG Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192 GI +K + L +++ + ++ +E+ G + ++GD + V + Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGQVRHL 226 >gi|332671062|ref|YP_004454070.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Cellulomonas fimi ATCC 484] gi|332340100|gb|AEE46683.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Cellulomonas fimi ATCC 484] Length = 717 Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 12/105 (11%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIK 131 I + G+ A + DK+R+K VS+ GVPV P T D + P ++K Sbjct: 115 IVFVGPGVRALDVMGDKIRAKDHVSAAGVPVIPGAP---LTDDEDPAVVAARVGYPLLVK 171 Query: 132 PLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYV 172 P GG G+ V+ + D ++ + + D LL+E+YV Sbjct: 172 PSAGGGGKGMTVVAEPGALDDALAASRRVARAAFGDDTLLLERYV 216 >gi|124485095|ref|YP_001029711.1| ornithine carbamoyltransferase [Methanocorpusculum labreanum Z] gi|124362636|gb|ABN06444.1| protein of unknown function DUF201 [Methanocorpusculum labreanum Z] Length = 301 Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust. Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 68/300 (22%) Query: 1 MAVLMGGISSEREVSLS-SGKACASAL----EDAGFKV---SQIDVDRSVGLVLAHLKPD 52 M VL+ ++ R+ +L+ GKA SAL E G V + D D + A L PD Sbjct: 1 MTVLIAEYTAVRDPALAPEGKAMVSALKKSFEACGHTVVMPTGSDFDAEI----ARLAPD 56 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + GLV A E+L YTH+ LA+ + V+ C L Sbjct: 57 CEY----------GLVIAPDEVLA-KYTHTLELAT---HNIGSDSTAVAVCASKRLSGKL 102 Query: 113 VNRFTMDSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + +D + Y VIKP+KG S+G + I KD +P GD + Sbjct: 103 LAKVGIDVPAEVPADYPGKRVIKPIKGAGSVG-VRIAKDGELP-----------GDGEMS 150 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS-------------YELKYSSLNSTHVL 215 +Y++G + ++G + + FYS E++ + H Sbjct: 151 VEYLEGEHFSVSIIG------SRVVGEACGFYSGLPPIFLTINRQLCEVREDGTFAYH-- 202 Query: 216 PAKIPLDIYKEVQ--RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + P+ +E + +A A + +GC+G D + + K++ +++N +P M+ + I Sbjct: 203 GGETPVHPPREAEMIEVAKKAIETLGCQGYVGLDMI---VGEKIWVVDVNPRPTMSILGI 259 >gi|295836736|ref|ZP_06823669.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp. SPB74] gi|295826182|gb|EDY44540.2| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp. SPB74] Length = 668 Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%) Query: 92 DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 DK+R+K+ V GVPV P S L + D+ I P ++KP GG G+ ++ ++ Sbjct: 120 DKIRAKETVRLAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179 Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172 + ++ ++ S D LL+E++V Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208 >gi|310640316|ref|YP_003945074.1| phosphoribosylaminoimidazole carboxylase, atpase subunit [Paenibacillus polymyxa SC2] gi|309245266|gb|ADO54833.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [Paenibacillus polymyxa SC2] Length = 391 Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust. Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 90 SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKK 146 + ++R K+ + + GVPV P I + + + + P V+K GG G +V+++ Sbjct: 110 TQHRLREKRSIEAAGVPVAPYREISSSADMVQAVAELGVPCVLKTAVGGYDGKGQVVVRQ 169 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDFYSYEL 204 + Q + G +L++EQ+ I C V+ S + A P ++ + Sbjct: 170 SEEATNAYEQLAG--SGSELVLEQF---IRFRCEISVIVARSTNGEAKAFPPAE----NI 220 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +++ T ++PA++P + +E ++LA +++ G+ Sbjct: 221 HVNNILHTSIVPARVPEPVQEEARKLALAVAESLDAVGL 259 >gi|311032130|ref|ZP_07710220.1| hypothetical protein Bm3-1_16599 [Bacillus sp. m3-13] Length = 393 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +L N + ++ LI +I+ + GG S I VIK +D ++ +N G +EQ Sbjct: 196 VLDNNGNIINKDLIDKRILIQDI-GGLSTDIAVIKNRN---VDDDKAQGFNLGVSEALEQ 251 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + I G+ D+ DV EI K+D ++ + S S H + +I LD+ K+ RL Sbjct: 252 IREEIRSKHGIELDSRRDVVEIITKKND-RNHIMVRGSRTSVHDITDRILLDLAKKQYRL 310 >gi|294946793|ref|XP_002785169.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC 50983] gi|239898731|gb|EER16965.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC 50983] Length = 260 Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 45/219 (20%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGI- 141 + DK ++++ + G+P F + + I P P V+KP+ G +SLG+ Sbjct: 41 ARDKYKTREALERHGLP-----RTTHFLISCEDDIEPAGDFVGYPAVMKPVSGAASLGVK 95 Query: 142 ---------IVIKKDQSIPLDLLQSSSW-----NHGDQ------------LLIEQYVDGI 175 V ++ Q + +L+ SS H D +++E+Y+DG Sbjct: 96 KVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSDPDAVAAAGRISTVVILEEYLDGQ 155 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+ V+ L T AV + + E +S + V+P+ +P D ++ LA + Sbjct: 156 EVDVDVVLSPGLGCT-FAVVTDNAPTKEPYFS--ETWGVIPSALPRDRCDQLVDLAVSSV 212 Query: 236 QAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +A+G G+ + + SR +E+N + G PV + Sbjct: 213 KALGFDSGVFHVEAKY--TSRGPRLIEVNARMGGGPVHL 249 >gi|90581267|ref|ZP_01237064.1| putative ribosomal protein S6 modification protein [Vibrio angustum S14] gi|90437506|gb|EAS62700.1| putative ribosomal protein S6 modification protein [Vibrio angustum S14] Length = 300 Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 22/194 (11%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140 +A + S DK+RS Q++S GV + + ++ D LI P VIK L+G +G Sbjct: 92 IAISRSRDKLRSLQLLSRKGVGMPVTGFASKPD-DVPDLIKMVGGAPLVIKLLEGTQGIG 150 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197 +V+ + Q ++++ + +++++Y+ G ++ C V+GD + + + Sbjct: 151 -VVLAETQKAAESVIEAFMGLKAN-IMVQEYIKEAGGADIRCFVIGDKVIASMKRQAAEG 208 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +F S + S + + P E ++ A A +A+G ++ D L +R Sbjct: 209 EFRSNLHRGGSASLIRITP---------EERKTAIAAAKAMGL-SVAGVDLLRS--NRGP 256 Query: 258 FWLEINVQPGMTPV 271 +E+N PG+ + Sbjct: 257 LIMEVNSSPGLEGI 270 >gi|260892280|ref|YP_003238377.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii KC4] gi|260864421|gb|ACX51527.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii KC4] Length = 1075 Score = 35.8 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 21/235 (8%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97 V VL +PD L G G + V+ +L+ L + + + + D+ K Sbjct: 74 VAKVLRKERPDGLLPTLGGQVGLNLAVELSRMGVLDELGVELLGTPLETIEKAEDRELFK 133 Query: 98 QVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLD 153 + + + G P+ S +V+R + I P V++P GG+ GI +++ L+ Sbjct: 134 ETMRAIGEPIPESRIVSRLEDAVSFAREIGFPVVVRPAYTLGGTGGGI---ARNEEELLE 190 Query: 154 LLQSSSWNHG--DQLLIEQYVDGI-ELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSL 209 + + H Q+L+EQ V G E+ VM D + + +T + D + + Sbjct: 191 I-AARGLKHSLIGQILVEQCVSGWKEIEFEVMRDGADNCITVCCMENLD----PMGIHTG 245 Query: 210 NSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 +S V P++ D Y+ ++R A +A+G RG F DP S + + +E+N Sbjct: 246 DSIVVAPSQTLTDKEYQMLRRAAIKIIRALGIRGGCNIQFALDPRSLRYYVIEVN 300 >gi|312885070|ref|ZP_07744758.1| Vibrioferrin biosynthesis protein PvsA [Vibrio caribbenthicus ATCC BAA-2122] gi|309367280|gb|EFP94844.1| Vibrioferrin biosynthesis protein PvsA [Vibrio caribbenthicus ATCC BAA-2122] Length = 404 Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + +K ++QV+ +P PS+L+++ + ++ P V KP +G +S+ V + D + Sbjct: 112 AKNKHFTRQVLDEKSLPSTPSLLLHQGDLSQSRTLNLPVVAKPKEGVASMD--VQRCDSN 169 Query: 150 IPLDLLQSSSWNH--GDQLLIEQYVDGIELTCGVMGDA 185 L+ + W +L+E+++ G +T +GD Sbjct: 170 AALESYCETFWQKYPTSPVLVEEFLQGPLITIETLGDG 207 >gi|119186247|ref|XP_001243730.1| hypothetical protein CIMG_03171 [Coccidioides immitis RS] Length = 655 Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + P +IKP G S G+ ++ + + HG + +IE+Y +G E+ Sbjct: 348 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 407 Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220 V+ D + E++ PK +D S+ + + +VLP+ +P Sbjct: 408 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 451 >gi|320039028|gb|EFW20963.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 676 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + P +IKP G S G+ ++ + + HG + +IE+Y +G E+ Sbjct: 367 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 426 Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220 V+ D + E++ PK +D S+ + + +VLP+ +P Sbjct: 427 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 470 >gi|303317914|ref|XP_003068959.1| hypothetical protein CPC735_009910 [Coccidioides posadasii C735 delta SOWgp] gi|240108640|gb|EER26814.1| hypothetical protein CPC735_009910 [Coccidioides posadasii C735 delta SOWgp] Length = 676 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + P +IKP G S G+ ++ + + HG + +IE+Y +G E+ Sbjct: 367 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 426 Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220 V+ D + E++ PK +D S+ + + +VLP+ +P Sbjct: 427 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 470 >gi|319786101|ref|YP_004145576.1| alpha-L-glutamate ligase, RimK family [Pseudoxanthomonas suwonensis 11-1] gi|317464613|gb|ADV26345.1| alpha-L-glutamate ligase, RimK family [Pseudoxanthomonas suwonensis 11-1] Length = 295 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 24/187 (12%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKK 146 S DK+R+ Q++++ G+ + ++ + L PP+V+K +G G+++ +K Sbjct: 97 SRDKLRAHQLLAAQGIDLPTTVFGDSPDDTDDLLSLLGPPPHVVKLNEGTQGAGVVLTEK 156 Query: 147 DQS--IPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYS 201 + ++ L+ N L++++V G +L C V+GD + + +F S Sbjct: 157 ASASRATVEALRGLYAN----FLVQEFVAEALGADLRCFVVGDRVVAAMRRQAAEGEFRS 212 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + H P + Q +A + QA+G ++ D + R LE Sbjct: 213 ---------NLHRGGQASPAEASAREQEVAVRSAQALGLE-VAGVDLIAS--GRGPLVLE 260 Query: 262 INVQPGM 268 +N PG+ Sbjct: 261 VNSTPGL 267 >gi|149184451|ref|ZP_01862769.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. SD-21] gi|148831771|gb|EDL50204.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. SD-21] Length = 1108 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 18/151 (11%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQ-LLIEQYV-DGIELTC 179 L+ P YV+ GG ++ I+ D LD +++ N GD +L++QY+ D +E Sbjct: 749 LLRPSYVL----GGRAMEIV----DSEPQLDDYINTAVNVSGDSPVLVDQYLRDAVECDV 800 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238 V+ D S E+ + + E S +S LP +P DI +E++R A +A+ Sbjct: 801 DVVSDGS----EVRIAGVMQHIEEAGVHSGDSACTLPPYSLPADIVEEMERQAKALAEAL 856 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 RG+ F +V+ +E+N + T Sbjct: 857 EVRGLMNVQFAVK--DGEVYLIEVNPRASRT 885 >gi|193216335|ref|YP_001997534.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton thalassium ATCC 35110] gi|193089812|gb|ACF15087.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton thalassium ATCC 35110] Length = 485 Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 24/189 (12%) Query: 92 DKMRSKQVVSSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 DK+R+K+ VPV P + + ++ D ++ P +IK GG G++ + Sbjct: 118 DKIRAKKTAVEANVPVIPGVNNPKSPDDIRKWMKDED--VAYPIMIKATAGGGGKGMVRV 175 Query: 145 KKDQSIPLDLLQSSSW---NHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199 +++ + Q+ S + GD+ +L+E+++ + ++ D+ +V + Sbjct: 176 QQECELEGAFQQAKSEAKKSFGDEEVLVEKFIQKSRHIEVQIVADSHGNVIHL------- 228 Query: 200 YSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + E N + A P +I +++ + A +AIG +FLFD ++K Sbjct: 229 FERECTIQRRNQKVIEEAPSPSITPEIRQDICQTAVRLMKAIGYTSAGTVEFLFDADTQK 288 Query: 257 VFWLEINVQ 265 ++LE+N + Sbjct: 289 FYFLEVNTR 297 >gi|327294976|ref|XP_003232183.1| hypothetical protein TERG_07035 [Trichophyton rubrum CBS 118892] gi|326465355|gb|EGD90808.1| hypothetical protein TERG_07035 [Trichophyton rubrum CBS 118892] Length = 669 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++H + P ++KP G SS G+ + +++ L + + HG + ++E Y G E Sbjct: 355 NKHDLQYPLIVKPCDGWSSEGVSRVDTPEALALAIKSIDASRHGTEFVMEPYCSGPEFDA 414 Query: 180 G-VMGDASLDVTEIA--VPKS 197 V+ D + +EI +PKS Sbjct: 415 NFVLLDGEVLFSEICDDLPKS 435 >gi|34557492|ref|NP_907307.1| urea amidolyase-related protein [Wolinella succinogenes DSM 1740] gi|34483209|emb|CAE10207.1| UREA AMIDOLYASE-RELATED PROTEIN [Wolinella succinogenes] Length = 1200 Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 12/181 (6%) Query: 93 KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQS 149 K ++++ GVP+ P +L + S+ I P ++K GG +G+ + +Q Sbjct: 116 KHTARELAIQSGVPLLPGSGLLSDLLEAKSEAKRIGYPVMLKSTAGGGGIGMQLCSNEQE 175 Query: 150 IPLDLL--QSSSWNH--GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + L + S NH + +E+YV + V GD VT + Sbjct: 176 LEESFLTVKRLSENHFANSGVFLEKYVSTAHHIEVQVFGDRKGKVTILGDRDCSLQRRNQ 235 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K L + +Y ++L +++ +F++DPL +K ++LE+N Sbjct: 236 KVVEETPAPHLSQECRESLYACAKKLM----ESVSYLSAGTVEFIYDPLEQKFYFLEVNT 291 Query: 265 Q 265 + Sbjct: 292 R 292 >gi|229822078|ref|YP_002883604.1| phosphoribosylamine/glycine ligase [Beutenbergia cavernae DSM 12333] gi|229567991|gb|ACQ81842.1| phosphoribosylamine/glycine ligase [Beutenbergia cavernae DSM 12333] Length = 433 Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 11/151 (7%) Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFTMDSQHLISPPYVIK 131 IP A+ L K +K+++++ GVP VC + +D+ PPYV+K Sbjct: 87 IPVFGPDAAAARLEGSKAFAKEIMAAAGVPTAMAHVCTTPDEVAAALDA---FGPPYVVK 143 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + G++V ++ L + ++IE+++DG E++ + D +V Sbjct: 144 DDGLAAGKGVVVTSDREAAVEHALACVRRSRRSAVVIEEFLDGPEVSLFCLSDGE-NVVP 202 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +A P DF + N T + A PLD Sbjct: 203 LA-PAQDFKRLGDDDAGPN-TGGMGAYTPLD 231 >gi|294892195|ref|XP_002773942.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239879146|gb|EER05758.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 542 Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 47/242 (19%) Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 +V + E +P ++ +A DK ++++ + G+P F + + I P Sbjct: 185 MVARLTEAFGLPGPGPHVVEAA--RDKYKTREALERHGLP-----RTTHFLISCEDDIEP 237 Query: 127 -------PYVIKPLKGGSSLGI----------IVIKKDQSIPLDLLQSSSW-----NHGD 164 P V+KP+ G +SLG+ V ++ Q + +L+ SS H D Sbjct: 238 AGDFVGYPAVMKPVSGAASLGVKKVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSD 297 Query: 165 Q------------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 +++E+Y+DG E+ V+ L T AV + + E +S + Sbjct: 298 PDAVAAAGRISTVVILEEYLDGQEVDVDVVLSPGLGCT-FAVVTDNAPTKEPYFS--ETW 354 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V+P+ +P D ++ LA + +A+G G+ + + SR +E+N + G PV Sbjct: 355 GVIPSALPRDRCDQLVDLAVSSVKALGFDSGVFHVEAKY--TSRGPRLIEVNARMGGGPV 412 Query: 272 SI 273 + Sbjct: 413 HL 414 >gi|20089051|ref|NP_615126.1| hypothetical protein MA0153 [Methanosarcina acetivorans C2A] gi|19913910|gb|AAM03606.1| predicted protein [Methanosarcina acetivorans C2A] Length = 363 Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 34/190 (17%) Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A +S DK +SK+ S G+P P R PPY +KP SS+G +I Sbjct: 97 AYRISRDKKKSKEYFRSIGIPT-PQDKPGR----------PPYFVKPPCESSSVGARIIY 145 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + +L+E+YV+G ++ V+GD T AV K + Sbjct: 146 D---------EEELGELEPGMLVEEYVEGEVISLEVIGDG----THFAVVKETLIHIDRT 192 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y + V P +P D+ + +++ + +GI + + P KV +EI+ + Sbjct: 193 Y---DCHMVTP--LPSDL--SFREISYSLAANLPLKGIMDVEAISGPQGLKV--IEIDSR 243 Query: 266 -PGMTPVSIF 274 P TP +++ Sbjct: 244 FPSQTPTAVY 253 >gi|82524025|emb|CAI78703.1| carbamoylphosphate synthase large subunit [uncultured Flavobacteriaceae bacterium] Length = 374 Score = 35.4 bits (80), Expect = 10.0, Method: Compositional matrix adjust. Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 31/186 (16%) Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL-KGGSSLGIIV 143 L L M + Q+ +S + + P F +S I+ P++IKP G +GI+ Sbjct: 119 LNKDLLTKHMSNNQIQASKSIVIKPG---ETFKNES---INSPFLIKPTSNSGGGVGIVA 172 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++ I +++ L+E+Y++G ++ C V+ D K +Y Sbjct: 173 FSNEKDIENYFIENK---FKINYLVEEYIEGYDICCNVLCD-----------KGKILAYT 218 Query: 204 LKYSSLNSTHVLPAKIPL------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + + + + L +YK++ +L +++ G++ D +D +++ Sbjct: 219 IHKGIMKGGKIYGPSVELLFLYDDQLYKKIVKLM----ESLNWYGVANIDIRYDERAKEF 274 Query: 258 FWLEIN 263 +EIN Sbjct: 275 KVIEIN 280 Searching..................................................done Results from round 2 >gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 299/299 (100%), Positives = 299/299 (100%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ Sbjct: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV Sbjct: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR Sbjct: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR Sbjct: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 >gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 337 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 35 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 95 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334 Query: 298 CLR 300 CLR Sbjct: 335 CLR 337 >gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 308 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++QRLA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] Length = 308 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021] gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti 1021] gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] Length = 308 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 308 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE G++V+++DV+R V LA LKPD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV S+++NRF + Sbjct: 66 PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PYV+KP++ GSS G++++K++Q+ P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY++ S HV+PA+I ++Y+++Q LA AHQAIGC Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305 Query: 298 CLR 300 C R Sbjct: 306 CSR 308 >gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56] Length = 308 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GF+V+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 308 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV S +VNRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 306 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA ALE G++VS++DV R V VLA L+PD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDASCL Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771] Length = 308 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5] Length = 308 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+++L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 308 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42] gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 308 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ +DV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV S ++NRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] Length = 308 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+YV G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA++ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099] gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 308 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV S + NRF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQA+GC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1] gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1] Length = 308 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA ALE G++VS++DV R V VL+ LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE L IPYTHSG+LASAL+MDK +K V S G+PV S ++NRF + Sbjct: 66 PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++++ QS P +L S+ W +G+++++E+Y+ G ELTC Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L V EI FY Y+ KY+ S HV PA+I +IY++++RLA AHQAIGC Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D P + WLEIN QPGMTP S+ P++AA AG F LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CPR 308 >gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 308 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G+ V S + +RF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P +L SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 312 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL++G CA ALE AG+KV+++DV V VL LKPD+ FN LHG Sbjct: 10 VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L IPYTHSG+ ASAL+MDK SK V + G+PV S ++NR S Sbjct: 70 PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+++++++Q+ P ++ SS W +GD++++E+YV G ELTC Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI FY Y+ KY + S HV PA+I +Y++++RLA AHQAIGC Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLEIN QPGMTP S+ PEMA AG+SF E + WMVEDAS Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309 Query: 298 CLR 300 C R Sbjct: 310 CRR 312 >gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] Length = 316 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLS+G +CA ALE G++V+++DVDR+V LA LKPD+AFN LHG Sbjct: 14 VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V G+PV + +++R Sbjct: 74 PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ +D+S P L S W +GD +++E+++ G ELTC Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI +Y Y+ KY+ STHVLPA+I +IY+++Q L+ AH+AIGC Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF D + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313 Query: 298 CLR 300 C R Sbjct: 314 CQR 316 >gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] Length = 308 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSL+SGK CA ALE+AG++V+++DVDR++ VL LKPD+ FN LHG Sbjct: 6 VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV ++VNR + Sbjct: 66 PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D+L+ E+++ G ELTC Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L V +I FY Y+ KY+ S H+LPAKI +Y+ ++ LA AHQA+GC Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD ++ LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 308 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G PV S + +RF + Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQ IGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060] gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060] Length = 307 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE GF+++ IDV R++ VLA ++PD+AFN LHG Sbjct: 5 VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV +VNRF S Sbjct: 65 PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS+G++++++ +S P L W++GD++L E Y+ G ELTC Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I ++Y Y+ KY+ S HVLPA+I IY+ V+ LA AHQA+GC Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AGYSF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 320 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V VLA LKPD+ FN LHG Sbjct: 18 VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + + Sbjct: 78 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMT S+ P++A AG SF ELL WMVEDAS Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317 Query: 298 CLR 300 CLR Sbjct: 318 CLR 320 >gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] Length = 309 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE G++V++IDV R + LA LKPD AFN LHG Sbjct: 7 IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K + + GVPV ++ + Sbjct: 67 KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +HL+ PPYV+KP+ GSS+G+ +++ D P L + W HGD +L+E+YV G ELTC Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L + EI + FY YE KY+ S H+LPA++ +IY+ +Q++A AH A+G Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245 Query: 240 CRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF D + ++ LE+N QPGMT S+ PE+AA+AG SF EL+ W+VE+A Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305 Query: 297 SCLR 300 SC R Sbjct: 306 SCNR 309 >gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 311 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 224/300 (74%), Positives = 270/300 (90%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG Sbjct: 12 VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS Sbjct: 72 GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI KSDFY+Y+ KYSS S+HVLPA IP I +EV+R++ +AHQAIGC Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311 >gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] Length = 321 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V LA L+PD+AFN LHG Sbjct: 19 VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V + GVPV + L +R Sbjct: 79 PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS G++++++DQ P L W +GD ++IE++V G ELTC Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L+V EI FY Y+ KY S+H++PA +P D+ +++Q + AH A+GC Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMT S+ P++AA +G+SF ELL WMVEDAS Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318 Query: 298 CLR 300 C R Sbjct: 319 CRR 321 >gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2] gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2] Length = 307 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA ALE GF+V+ +DVDR + LA L+PD A N LHG Sbjct: 5 VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV + + RF Sbjct: 65 RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KPL GSS G+I+++ DQ+ P L W +GD +L+E++V G ELTC Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + VTEI +Y Y+ KY + S H+LPA + +Y+ VQ LA +AH+A+GC Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMVEDAS Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] Length = 309 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 217/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ CA+ALE G+KV+++DVDR + VLA L+PD+AFN LHG Sbjct: 7 VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++ G+PV ++VNRF + Sbjct: 67 PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+I++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L V E+ + FY ++ KY+ S H+LPAKI +Y+E+Q+L+ AHQA+GC Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306 Query: 298 CLR 300 C R Sbjct: 307 CCR 309 >gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 307 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA AL GF+V+++DVDR +G LA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+ + V+R Sbjct: 65 RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKPL GSS G+ ++++DQ+ P L S W G+++L+E Y+ G ELTC Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + DV EI +Y Y+ KY S H+LPA++ +IY+ VQ L+ AH+A+GC Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMV+DAS Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] Length = 308 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R + VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E+Y+ G ELTCG Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA+I IY+++Q LA +AH+AIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] Length = 307 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKACA ALE G++V+++DV + VL L+PD AFN LHG Sbjct: 5 VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V +VNR Sbjct: 65 PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS+G+I+++ +S P +L S W G+Q+L E Y+ G ELTCG Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V E+ D+Y Y+ KY+ S HVLPA++ ++Y+ VQ L+ AHQA+GC Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PEMAA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] Length = 311 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER +SL SG ACA ALE GF+V+++DV R V VLA LKPD+AFN LHG Sbjct: 9 VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LAS+L+M K +K V+++ GVPV +++R Sbjct: 69 RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+ ++K+ +S P L ++ W HGD +L E +VDG ELTC Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +FY ++ KY+ S HVLPA + +IY+EVQ+LA AH+A+GC Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PEMAA+AGYSF L+ WMVEDAS Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308 Query: 298 CLR 300 C R Sbjct: 309 CDR 311 >gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] Length = 308 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V VLA LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V S+L+NRF + + Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +DV EI FY Y+ KY + S+HV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 162/303 (53%), Positives = 217/303 (71%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S EREVSL SG CA ALE+ G++V+++DVDR V VLA LKPD+A N+LHG Sbjct: 5 VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV LV R Sbjct: 65 CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GGSS+G+ ++K+DQ P L + W G+ L+ E ++ G+ELTCG Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV E+ FY YE KY++ S H+LPA++ IY++V+ LA AH+A+GC Sbjct: 185 VMGDRALDVIEVEAVH-GFYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISR+DF +D P + + LE+N QPGMT S+ P+MAA+AG SF EL+ WMVEDA+ Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303 Query: 298 CLR 300 R Sbjct: 304 LDR 306 >gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4] gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4] Length = 300 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 162/299 (54%), Positives = 218/299 (72%), Gaps = 3/299 (1%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 +GG SSER VSL+SG CASALE+ G++V+++DV R + VL LKPD+ FN LHG FGE Sbjct: 2 LGGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFGE 61 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV + ++RF + + H I Sbjct: 62 DGTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHPI 121 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E YV G ELTCGVM Sbjct: 122 EPPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMDG 181 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VTE+ + FY Y+ KY++ STHV+PA++ IY+++Q L+ AH AIGCRG+S Sbjct: 182 KALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGVS 241 Query: 245 RSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RSDF +D + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R Sbjct: 242 RSDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300 >gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58] gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58] Length = 308 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R V VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQS P +L SS W G+Q+++E+Y+ G ELTCG Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA I IY+++Q LA +AHQAIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] Length = 307 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I++++++S P +L S W +G+++L E Y+ G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] Length = 307 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 197/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR + L+ ++PD+ FN LHG Sbjct: 12 VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+ + G+P+ S L + + Sbjct: 72 RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ +++ + P L + + +++E Y G ELT Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQL----GADMPEVVMVETYAPGRELTVS 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC Sbjct: 188 VMGERALAVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AA G SF EL WMVEDASC Sbjct: 246 RGLSRTDFRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 NR 307 >gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] Length = 308 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGK CA AL G++V++ID R + + +KPD+AFN LHG Sbjct: 7 VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V + G+PV S++V R Sbjct: 67 RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +++ + P L S+ WN GD+++ E+Y+ G ELTC Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ VTEI + + FY YE KY + S H++PA I DIY EVQR+ AH+A+GC Sbjct: 187 VMGEEIFGVTEI-IANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD P ++ LE+N QPGMTP S+ PE+A AGYS+ EL+ WMVE+AS Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305 Query: 298 CLR 300 C R Sbjct: 306 CDR 308 >gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] Length = 307 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE AG++V+++DVDR++ VL LKPD+AFN LHG Sbjct: 5 VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV S++V+R Sbjct: 65 PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP+ GSS G++++K+ Q P L W +G+ L++E+Y+ G ELTC Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +Y Y+ KY S H+LPA+I +Y+E+Q+ + AH A+GC Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++R+DF F+ ++ LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CGR 307 >gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] Length = 307 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSL SG+ACA+ALE GF+VS++DVDR V LA LKPD+AFN LHG Sbjct: 5 VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV ++ R + Sbjct: 65 PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H SPPYVIKP+ GSS G+I++++DQ P L S W G+ LL+EQ+V G ELTC Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI FY Y+ KYS S H++PA+IP D+ +++Q + LAH+AIGC Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++RSDF +D +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CER 307 >gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] Length = 307 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4] gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4] Length = 307 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA+ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] Length = 307 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+ERE+SL SG+ACA ALE+ ++VS++DV VLA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELL IPYTHSG+LAS+++M K +K V+++ GVPV +V+R Sbjct: 65 KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +I + P L + W HGD +L EQ++ G ELTC Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI +Y Y KY+ S HVLPA + +IY+EVQ LA AH+A+GC Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PEMAAYAG+SF EL+ WMVEDAS Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] Length = 307 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] Length = 304 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 2/299 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S ER+VSL SG+ ALE G++VS ID D L +KPD+ FN LH Sbjct: 5 VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG VQ +L+ L PYTHSG+ ASAL+MDK R+K V+ G+ L++RF Sbjct: 65 GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 H++ PPYV KP GSS+G++++ + + P +L S W + +++LIE+++ G ELT Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 VMGD L VTEI VPK+ FY Y+ KYS S H LPA +P ++ E A AHQ +G Sbjct: 185 AVMGDKPLTVTEI-VPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG++RSDF +DP + V+ LEIN QPGMTP S+ PE AA+ G F +L+ WMVE+A+C Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302 >gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] Length = 307 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 147/302 (48%), Positives = 201/302 (66%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D + VLA ++PD FN LHG Sbjct: 12 VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S++ + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +++ D + P L + + L++E Y+ G ELT Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRL----APDMPRDLMVETYIPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y+ KY S HV+PA++P +I +A AH+A+GC Sbjct: 188 VMGDRALAVTDIVT--DGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + LE N QPGMTP S+ PE AA+ G SF E WMVEDASC Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 NR 307 >gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] Length = 307 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG Sbjct: 12 VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ ++ +D + P L + L++E YV G ELT Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GC Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305 Query: 299 LR 300 R Sbjct: 306 SR 307 >gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] Length = 307 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V++++V + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] Length = 304 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 151/301 (50%), Positives = 201/301 (66%), Gaps = 2/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ER+VSL +G ACA L DAG++V +ID R + LA PD+ FN LHG Sbjct: 5 IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDGLVQ +LE PYTHSG+LASAL+MDK ++K V+ + G+P I+ NRF Sbjct: 65 EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV KP GSS+G+ ++ + + P L S++W GD++LIE+YV G ELT Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L VTEI P + FY YE KY++ S H+LPA I +I + LA AH+A+GC Sbjct: 185 VMEDRALCVTEIK-PNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243 Query: 241 RGISRSDFLFD-PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG++RSDF +D ++ LEIN QPGMTP S+ PE A Y G F +L+ WM E+ASC Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303 Query: 300 R 300 R Sbjct: 304 R 304 >gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] Length = 306 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR + Sbjct: 65 RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + +P + ++ D LLIE++ Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L I P FY YE KY S + + P+ + D+ ++ +A Sbjct: 183 LSGPEYTVAVLGDEVLPSIRIQPP-GIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADMA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 MKAYQAVGCRGWGRVDVMQD-SDGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300 Query: 292 MVEDAS 297 ++E AS Sbjct: 301 ILELAS 306 >gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] Length = 327 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE+AG++VS++DVDR+V VL L+PD+AFN LHG Sbjct: 25 VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV +VNR + Sbjct: 85 PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V D +L V +I +FY ++ KY+ S H+LPAKI +Y+ + LA AHQA+GC Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324 Query: 298 CLR 300 C R Sbjct: 325 CCR 327 >gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] Length = 294 Score = 364 bits (935), Expect = 9e-99, Method: Composition-based stats. Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG+ CA+AL GF+V ++D R + LA +KPD+ FN LHG +G Sbjct: 2 LMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V S G+PV S L + + + H+ Sbjct: 62 EDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGHV 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++PPYV+KP GSS+GI ++ + + P L ++ Q+++E Y G ELT V+G Sbjct: 122 MAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEA----MPQQVMVETYAPGRELTTTVIG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D +L VT+I +Y Y+ KY S HVLPA +P +I+ A AH+A+GCRG+ Sbjct: 178 DRALTVTDILT--DGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRGV 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SR+DF +D + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC R Sbjct: 236 SRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294 >gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 306 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+ CA+AL GF+V ++D + L PD+ FN LHG Sbjct: 11 VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+ + G+PV S L +R +++ Sbjct: 71 RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + + L++E+YV G EL+ Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVL----APDLPATLMVEEYVPGRELSTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L+VT+I +Y Y KYS S HV+PA +P +I++ A AH+A+GC Sbjct: 187 VLGDRALNVTDIIT--DGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D +F LE N QPGMTP S+ PE A AG SF +L WMVEDASC Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304 Query: 299 LR 300 R Sbjct: 305 DR 306 >gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] Length = 315 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 145/303 (47%), Positives = 210/303 (69%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R + +L L KPD+ FN L Sbjct: 14 VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDGL+Q +LE L +PYTHSG+LASAL+M+K +++V+++ GVPV + V R + Sbjct: 74 HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + H I PPYV+KP+ GSS+G+ +++ Q+ +L+ W +G+++L+E+++ G ELT Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GVMGD +L VTEI VP+S F+ Y KY+ + HV PA+IP D+ +E RLA LAH+ + Sbjct: 192 VGVMGDRALAVTEI-VPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250 Query: 239 GCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GC G+SRSDF +D + +++LE N QPG T +S+ PE AA G F EL W+VE Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310 Query: 296 ASC 298 A C Sbjct: 311 ARC 313 >gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] Length = 306 Score = 363 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 214/303 (70%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+ACA A E G++V+++DV R + VL LKPD+A N LHG Sbjct: 5 VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++ VPV +V R Sbjct: 65 PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS+G+ +IK+DQ P L W HGD LL E+Y+ G+ELTC Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY YE KY+ S H+LPA+I ++Y++V+ LA AH+A+GC Sbjct: 185 VMGDEALGVIEIQ-SDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRALGC 243 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISRSDF +D + + LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVEDAS Sbjct: 244 RGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVEDAS 303 Query: 298 CLR 300 R Sbjct: 304 LDR 306 >gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] Length = 302 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 140/300 (46%), Positives = 200/300 (66%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG SSEREVSLSSG+ A A + GF V +ID+ R + L PD+ N LHG Sbjct: 4 VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V + G+ V + + + + Sbjct: 64 PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ + + P L W GD +L+EQ++ G ELT Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTEI + D+Y Y KY + S HV+PA+I + + A +AH A+GC Sbjct: 184 VMGNEALAVTEITTLR-DYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG+SRSDF +D ++++ LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302 >gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] Length = 312 Score = 362 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSLSSG+ CA ALE KV+++D R + VL LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V L +R + S Sbjct: 70 KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I PPYV+KP GSS+G+ V ++ + P+ + + W +GDQ+++E ++ G EL Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189 Query: 181 VMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+A+ P FY YE KY+ S HVLPA++P ++ + R A LAH A Sbjct: 190 VIGEATGPRALTITDITPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHAA 249 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG+SR+DF +D ++ + LE+N QPGMTP S+ PE AA+ G +REL+ WMVEDAS Sbjct: 250 MGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDAS 309 Query: 298 CLR 300 C R Sbjct: 310 CPR 312 >gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 307 Score = 362 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 144/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG+ CA AL AG+ V++ID + L L PD+ FN LHG Sbjct: 12 VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K + G+PV S L ++ + + Sbjct: 72 RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GSS+G+ ++ + P L + +++E Y G ELTC Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQLSDE----MPEVVMVETYAPGRELTCT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI + +Y Y KY++ S HV PA++P I + ++ A AH+A+GC Sbjct: 188 VMGDRALCVTEIVT--TGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AA G SF +L WMVEDASC Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 DR 307 >gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] Length = 306 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 141/300 (47%), Positives = 201/300 (67%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER VSLSSG+ A+A AG+ V++IDV R + LA +PD+ N LHG Sbjct: 8 VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V S G+ V V R + Sbjct: 68 PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G++++++ + P L +W +GD L+ E+Y+ G ELT Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI + D+Y ++ KY++ S HV+PA +P + + A LAH+A+GC Sbjct: 188 VLGDRALAVTEITTLR-DYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG +RSDF +D ++ LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306 >gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] Length = 294 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 147/299 (49%), Positives = 197/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG +G Sbjct: 2 LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++HL Sbjct: 62 EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHL 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + PPYV+KP GSS+G+ ++ +D + P L + L++E YV G ELT VMG Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVTVMG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRGI Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC R Sbjct: 236 SRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294 >gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] Length = 296 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 147/301 (48%), Positives = 197/301 (65%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL G +V ++D + L +KPD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V + G+PV S++V + + + Sbjct: 62 WGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMAG 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PYV+KP GSS+GI ++ + + P L + +Q+++EQYV G ELT V Sbjct: 122 HVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQLSD----DMPEQVMVEQYVAGRELTVTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VTEI +Y Y+ KY S HVLPA IP I+ A AHQ +GCR Sbjct: 178 MGDRALTVTEILT--DGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+D+ +D + +F LE N QPGMTP S+ PE AA+ G +F +L WMVEDASC Sbjct: 236 GVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASCD 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] Length = 294 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 146/299 (48%), Positives = 197/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG +G Sbjct: 2 LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++H+ Sbjct: 62 EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHI 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + PPYV+KP GSS+G+ ++ +D + P L + L++E YV G ELT VMG Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQNLMVETYVPGRELTVTVMG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRGI Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC R Sbjct: 236 SRSDLRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294 >gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227] gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94] gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227] gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94] gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74] Length = 306 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] Length = 308 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V+++DV R + VLA LKPD+AF LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYTHSG+LAS+L+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS+G+ ++ ++ + P L W+HG++LL+E+YV G ELTC Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + +VTEI VP FY YE KYS S HVLPA I +Y+EV+RL AH ++GC Sbjct: 187 VIKGEASEVTEI-VPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39] gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39] Length = 306 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1] gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989] gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9] gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9] gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989] gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1] gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9] Length = 306 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] Length = 296 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 191/301 (63%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + + Sbjct: 62 WGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRAG 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV+KP GSS+G+ +++ + P L + D +++E Y G ELT V Sbjct: 122 HVMPPPYVVKPYNEGSSVGVYLVEAGANRPPALSD----DMPDVVMVESYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +GD +L VT+I +Y Y+ KY S HV+PA +P +I+ A AH+ +GCR Sbjct: 178 IGDRALTVTDILT--EGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE A G SF EL WMVEDASC Sbjct: 236 GVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASCN 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] Length = 306 Score = 361 bits (928), Expect = 5e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] Length = 306 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ ++++ ++ L ++ H +++LIE++ Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGALAL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + ++ +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] Length = 306 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAVLGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v] Length = 306 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] Length = 308 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V++IDV R + VL +LKPD+A +LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+L+S+L+M K +K V+++ GVPV + + R + Sbjct: 67 KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYVIKP+ GSS+G+ ++ +DQ+ P L W HG++LL+E+Y+ G ELTC Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + DV EI VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VIKGEASDVIEI-VPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] Length = 296 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 142/301 (47%), Positives = 198/301 (65%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLS+G+ CA+AL D G++V+++D + LA +PD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+ + G+PV S L + + + Sbjct: 62 WGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+GI ++++ + P L + + D++++E Y G ELT V Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQLSE----DMPDEVMVETYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L VT+I +Y ++ KY S HVLPA +P +I++ A AH A+GCR Sbjct: 178 VDGKALTVTDILT--DGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D K + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 236 GVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASCG 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1] gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ACA ALE G++V++IDVDR++ VLA KPD+AFN LHG Sbjct: 6 VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV +V+R ++ S Sbjct: 66 PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP+ GSS G++++K+D P L W + D L+ E+Y+ G ELTC Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I FY YE KY+ S H+LPAKI IY+EVQ+L AHQA+GC Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15] Length = 306 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + S G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 292 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 148/298 (49%), Positives = 193/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++ LAH+KPD+ FN LHG +GE Sbjct: 1 MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE L IPYTHSG+LASAL+MDK R+K + G+PV PS+L R + +H++ Sbjct: 61 DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + P L S D +++E Y G ELT V+GD Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQL----SPEMPDVVMVEAYAAGRELTTAVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KYS S H +PA IP+ IY A AH+A+GCRG+S Sbjct: 177 RALTVTDIIT--DGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+AG SF EL W+VEDASC R Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292 >gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 306 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL+SG A +AL + G +D L + D F LHG Sbjct: 5 IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + V R +S Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P ++KP + GSS+G+ + K + L ++ H +++LIE++ Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGMSKVDKADDLTSALAL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + + +E++ L Sbjct: 183 LGGPEFTVAMLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMQD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046] gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS] gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11] gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026] gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B] gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412] gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354] gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736] gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine Ligase At 2.3 Angstroms Resolution gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli] gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli] gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr. W3110] gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046] gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS] gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11] gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026] gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042] gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412] gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354] gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407] gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W] gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1] gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431] gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B] gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010] gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G] gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68] gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180] gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357] gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88] Length = 306 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197] gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197] Length = 306 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 305 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 179/300 (59%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL +GKA + AL G++V+ ID R + L ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++ G+ ++ R Sbjct: 71 RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L P V+KP + GS++GI ++ +Q + L ++ H D +L+EQ++ G E+T G Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQELAAGL--EEAFRHDDLVLVEQFIAGAEVTVG 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L + ++ VPK FY Y+ KY+ + ++LPA +P +Y +Q A +AIGC Sbjct: 189 VLDGQPLPIIQV-VPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G +R DF+ + LE+N PGMT S+ P+ A G SF EL+ ++ AS + Sbjct: 248 CGAARVDFMVTDTG--FYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGASLRK 305 >gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 297 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 147/301 (48%), Positives = 200/301 (66%), Gaps = 7/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL GF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++ + G+P+ PS++V + + Sbjct: 62 WGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVVA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV KP GSS+GI ++ ++ + P L + D +++E+YV G ELT V Sbjct: 122 HVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAA----MPDHVMVEKYVAGRELTVTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VTEI + +Y Y+ KY S HVLPA IP DI+ A AH A+GCR Sbjct: 178 MGDRALTVTEI-MTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGCR 236 Query: 242 GISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R+D+ +D + +F LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 237 GVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASCD 296 Query: 300 R 300 R Sbjct: 297 R 297 >gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 306 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a] gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a] gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82] gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2] Length = 306 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327] Length = 306 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007] Length = 306 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P +++ R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_05] gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_10] gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] Length = 306 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] Length = 306 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D +L + F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ +++ ++ L ++ H +++LIE++ Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGALAL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVALLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301] gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401] gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301] gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401] gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017] gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T] gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70] gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71] gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671] gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71] gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218] gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272] gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227] gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + +PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + D+++ L + ++ H +++LIE++ Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKV--DKAVDLADALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + E+Q L Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC 35316] gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL+SG A + L + G +D L + D F LHG Sbjct: 5 IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + K +P L ++ H +++LIE++ Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAALAL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + +++ L Sbjct: 183 LSGPEYTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966] gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 str. EDL933] gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai] gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC1212] gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125] gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044] Length = 306 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSVRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D11S-1] Length = 309 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 175/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAVDELESAVDFALKF--DNTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + + +E++RL A Sbjct: 188 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905] Length = 306 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606] gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50] gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)] gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489] Length = 306 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 306 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+DAG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ +P + + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILERA 305 >gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 306 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +LIE++ Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ +P D + + LA Sbjct: 183 LSGPEYTVAILGDDVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89] gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1] gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88] gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89] gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1] gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88] gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034] gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146] gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTIAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 163/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR + Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + ++P + ++ D LLIE++ Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L I P FY YE KY S + + P+ + E+ +A Sbjct: 183 LSGPEYTVAVLGDNVLPSIRIQPP-GVFYDYEAKYLSDETQYFCPSGLDSQREAELADIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D K + LE+N PGMT S+ P A AG F +L+ Sbjct: 242 MQAYQAVGCRGWGRVDVMQD-SDGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVAR 300 Query: 292 MVEDAS 297 ++E AS Sbjct: 301 ILELAS 306 >gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5] gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 332 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 188/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 37 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 97 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + + ++++E + G ELT Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTT 212 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 213 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330 Query: 299 LR 300 R Sbjct: 331 DR 332 >gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14] Length = 306 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSY-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 311 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLSSG+ CA AL AG++V ++D R + LA PD+ FN LHG Sbjct: 16 VVVLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L YTHSG+LASAL+MDK R+K+++ G+PV S++ + + + Sbjct: 76 RWGEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRA 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYV+KP GSS+G+ ++ + + P L ++++E Y G ELT Sbjct: 136 RHVMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSD----KMPARVMVETYAPGRELTVA 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI +Y Y+ KY+ S HV+PA IP +I + A AH+A+GC Sbjct: 192 VLGDRALGVTEIVT--EGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGC 249 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG++RSDF +D + LE+N QPGMTP S+ PE AA++G F L W+VE+A C Sbjct: 250 RGLTRSDFRWDESRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309 Query: 299 L 299 Sbjct: 310 R 310 >gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073] gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073] gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972] gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1] Length = 306 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 306 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++L+E++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] Length = 306 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSQGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 306 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A] gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A] Length = 306 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] Length = 306 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG ID+ L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 65 RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYAG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L + H D +L+E++ Sbjct: 125 AEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY Y+ KY S ++ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536] gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536] gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1] Length = 306 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A L +AG +D+ L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+PV P + ++R D Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P ++KP + GSS+G+ + L++ ++ H D +L+E++ Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDALVE--AFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +G+ L I P FY YE KY S + + P+ + D +E+ LA Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAP-GVFYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++++ C G R D + D + + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 RKAYKSLDCSGWGRVDVMMD-SDGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDAS 297 ++E A+ Sbjct: 301 ILELAN 306 >gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 292 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G CA+AL +AG++V ++D + L L+ + PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK ++K + + +PV S+L R + H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ +++ S P DL + +Q+++E + G ELT VMGD Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDLSD----DMPEQVMVEAFAPGRELTATVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y+ KY+ S HV+PA IP DI+ A AH+ +GCRG+S Sbjct: 177 KALTVTDILT--DGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292 >gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520] Length = 306 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032] gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032] Length = 326 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 163/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L+ AG +D L D F LHG Sbjct: 25 IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q LE L +PYT SG++ASA++MDK+R+K + G+PV P + + R + Sbjct: 85 RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + Q++ L ++ H ++L+E++ Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPAL--ELAFEHDSEVLVEKW 202 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S + + PA I + +Q L Sbjct: 203 LSGPEFTVAILGDDILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 261 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 262 LEAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 320 Query: 292 MVEDAS 297 ++E A+ Sbjct: 321 ILELAN 326 >gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE K+ S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703] Length = 306 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L++ ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSALVE--AFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILTLA 305 >gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] Length = 306 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+AFN LHG Sbjct: 11 VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK + G+PV S++ + + + Sbjct: 71 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I+PPYV+KP GSS+GI ++ + + P L + Q+++E Y G E+T Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEE----MPAQVMVEAYAPGREMTVT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA+IP +I A AHQ +GC Sbjct: 187 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304 Query: 299 LR 300 R Sbjct: 305 ER 306 >gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 306 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L +AG +D L + D F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + K + L ++ H +++LIE++ Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGMSKVDKADDLSSALAV--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWHVLGCSGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] Length = 308 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 183/305 (60%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A AL++ G++ +IDV + L L+ +KPD+ F LHG Sbjct: 3 VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE++ +PYT GILASAL+M+K+ +K+ + S +P I +++ Sbjct: 63 KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P V+K GSSLG+ ++++++ + L + ++ + +L+E++++G Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180 Query: 175 IELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +E+T V+G+ L + EI V Y YE KY+ S H++P ++P ++V+ LA Sbjct: 181 VEVTAAVLGNRKPVVLPLIEI-VADKGVYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELA 239 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ + CRG SR DF+ D + LE+N PG+T VS+FP+ A AG SF EL+ Sbjct: 240 LATYRWLDCRGFSRIDFMVDHKGN-PYILEVNTIPGLTEVSLFPDAARAAGISFGELVER 298 Query: 292 MVEDA 296 ++ A Sbjct: 299 LIYLA 303 >gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1] Length = 306 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 306 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 306 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG ID+ L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 65 RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYAG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L + H D +L+E++ Sbjct: 125 AEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY Y+ KY S ++ + P+ + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] Length = 306 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ CA AL AG+KVS+IDVDR + L +KPD+ FN LHG Sbjct: 8 VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L +L IPYTHSG+ ASA++MDK +K V + G+ +V D Sbjct: 68 PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 ++PPYVIKP+ GSS+G+ ++++ + + W GD +L+E+YV G ELT Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVREGDNYRP---TAEDWPFGDAVLVERYVPGRELTVA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V +++VTEI FY Y+ KY+ S H+LPA +P +I ++ +A AH+AIGC Sbjct: 185 VWDGEAMEVTEI-TSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIGC 243 Query: 241 RGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + + LEIN QPGMTP S+ PE AA+ G SF EL+ MVEDA Sbjct: 244 RGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDAR 303 Query: 298 CL 299 C Sbjct: 304 CD 305 >gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] Length = 308 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 135/302 (44%), Positives = 193/302 (63%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SGK A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ YTHSG++ S +++DK +KQ + G+P+ +V+ ++ S Sbjct: 68 VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +++ D + P+ W D+LL E ++ G ELT Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ V KS FY Y+ KY+ + HV PA +P D+ + ++ LA AH+ + Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + EL+ +VE+A Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306 Query: 297 SC 298 Sbjct: 307 LT 308 >gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] Length = 308 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R + Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ + + + + + + +LIE+++ G Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G+ L +I VP+ +FY YE KY + N+ + P+ + + +E+++L A Sbjct: 188 DELTVPVLGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 >gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] Length = 309 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL +G D + L K D F +LHG Sbjct: 12 VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG VQ LEL++IPYT SG++ASA++MDK R+K V + G+P+ + Sbjct: 72 RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPSDWN 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ +K +P+ +++ + ++ E ++ G E T Sbjct: 132 AVADHLDLPLFVKPSSEGSSVGVTKVKTVDELPIAYAEAA--KYDKVVIAESFMSGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L V +I P ++FY YE KY ++ ++ P + ++ E+Q LA LA Q I Sbjct: 190 ATILNGRALPVIKIE-PANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLALLAFQLI 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G R DF K + LEIN PGMT S+ P A AG SF +L++ ++E A Sbjct: 249 GCQGWGRVDF-LRGDDGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQILEGA 305 >gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] Length = 296 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 140/301 (46%), Positives = 192/301 (63%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + ++ Sbjct: 62 WGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRTR 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV+KP GSS+GI +++ + P L + + +++E Y G ELT V Sbjct: 122 HVMPPPYVVKPCNEGSSVGIYLVEAGANNPPALSD----DMPEVVMVEAYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH +GCR Sbjct: 178 MGDRALTVTDILT--DGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE A G +F EL WMVEDASC Sbjct: 236 GVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASCN 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] Length = 306 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYDALQSALAL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + ++ L Sbjct: 183 LSGPEFTVAILGEEILPTIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLETAQEALLRDLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A G SF +L++ Sbjct: 242 RKAWSTLGCKGWGRIDAMLD-SDGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 306 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 296 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 144/301 (47%), Positives = 193/301 (64%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL G++V ++D + L + PD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK G+PV SIL ++ T+ + Sbjct: 62 WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+I+PPYV+KP GSS+GI ++ + + P L S + +++E Y G ELT V Sbjct: 122 HVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDS----MPETVMVEAYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VT+I +Y YE KY+ S H PAK+P +I + A AH+ +GCR Sbjct: 178 MGDRALGVTDIIT--DGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D K + LE N QPGMTP S+ PE A G SF +L WMVEDASC+ Sbjct: 236 GVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASCV 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] Length = 313 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 14 IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 74 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133 Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ + + P ++KP GSS+G+ +K + + + ++ +LIE+++ G Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAELESAVDFALKFDR--TVLIEEWLAG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + +E++ L A Sbjct: 192 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 251 YDVVGCRGWSRIDVIADAEGN-FRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309 Query: 295 DAS 297 ++ Sbjct: 310 LSA 312 >gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 308 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 209/303 (68%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SGKACA ALE G++V+++DV R++G VL LKPD+A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYVIKP+ GSS+G+ ++ + P L W HG+QLL+E+YV G ELTC Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ V EI V + FY YE KYS S H+LPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTGVIEI-VQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AA AG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LGR 308 >gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 306 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] Length = 308 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 110/300 (36%), Positives = 174/300 (58%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R + Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ + + + + + + +LIE+++ G Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++G+ L +I VP+ +FY YE KY + N+ + P+ + + +E+++L A Sbjct: 188 DELTVPILGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 >gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82] Length = 306 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 306 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 306 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR ++ Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L++ ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSALVE--AFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILTLA 305 >gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] Length = 309 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 174/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 GEDG +Q +LE + +PYT G++ SAL+MDKMR+K + + G+PV +V NR Sbjct: 70 RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKSVDELESAVDFALKF--DNTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L +I VP+ +FY Y+ KY S N+ + PA + + +E+ RL A Sbjct: 188 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1] Length = 306 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-SAGTFYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74] Length = 306 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] Length = 292 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 139/298 (46%), Positives = 197/298 (66%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ACA+AL D F+V ++D + L +PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V + G+PV S++V+ T+ H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ +++ + + P L + ++++E+++ G ELT VMG+ Sbjct: 121 DPPYVVKPNNEGSSVGVYLVEIENNGPPQLDDA----MPAEVMVEKFIPGRELTTTVMGE 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I + +Y Y+ KY + STHV+PA IP +I++ A AH A+GCRG+S Sbjct: 177 RALTVTDIHT--TGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D +F LE N QPGMTP S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292 >gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 306 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 172/305 (56%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P I +NR MD+ Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP + GSS+GI + + + L++ ++ H D++L+E + Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAALVE--AFRHDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQTS-SEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 306 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 319 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 188/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 24 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 84 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + + ++++E + G ELT Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTT 199 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 200 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317 Query: 299 LR 300 R Sbjct: 318 DR 319 >gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 292 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 134/298 (44%), Positives = 193/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L Q + D++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQ----DMPDEVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLTVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 306 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163] Length = 306 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTKLKEDGFTRVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRHYSE 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ +P D + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAVLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ C G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 317 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 146/304 (48%), Positives = 203/304 (66%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ER+VSL+SG A AL + G++V++IDVDR++ L + PD+ FN LHG Sbjct: 15 VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++ GV V + LV R Sbjct: 75 KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G++++ P +S + +++E+YV G ELTC Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPS-SIASGGSPDQIVMVERYVPGRELTCA 193 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD DV EI + FY YE KY + S H LPA++ D+Y+ V+ L AHQA+G Sbjct: 194 VIGDFVTDVIEIVPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQALG 253 Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF FD + ++ LE+N QPGMT S+ PE+A +AG+SF +L+ WMVEDA Sbjct: 254 CRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVEDA 313 Query: 297 SCLR 300 SC R Sbjct: 314 SCNR 317 >gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86] gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] Length = 306 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVTILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A A SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] Length = 306 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + +++F Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP GSS+G+ + + L ++ + +LIE++ Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAALAL--AFRFDETVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ +L I P FY YE KY S + + P+ + ++ +LA Sbjct: 183 LSGPEYTVAVLGEQTLPSIRIQPP-GVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 MRAYQAVGCRGWGRVDVMQD-SDGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300 Query: 292 MVEDAS 297 ++E A+ Sbjct: 301 ILELAN 306 >gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] Length = 306 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 167/303 (55%), Positives = 217/303 (71%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V VL HLKPD+AFNVLHG Sbjct: 5 VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV LV+R Sbjct: 65 QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GGSS+G+ ++++DQ+ P L W HG+ LL E+++ G+ELTC Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD LDV EI FY YE KY+ S H+LPA+I +IY+ VQ L+ AH+A+GC Sbjct: 185 VMGDKVLDVIEIE-STQKFYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FDP + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 244 RGVSRSDFRFDPSRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDAS 303 Query: 298 CLR 300 R Sbjct: 304 LER 306 >gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 306 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ + + +E+ LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] Length = 306 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID L + F LHG Sbjct: 5 VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + + + Sbjct: 65 RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + +++P L ++ + LLIE++ Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAALDL--AFQFDETLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD +L I P FY YE KY S + + P+ + + E+ LA Sbjct: 183 LSGPEFTVAVLGDNTLPPIRIQPP-GIFYDYEAKYLSDETQYFCPSGLDEQLESELADLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+Q +GC G R D + D + + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAYQVVGCEGWGRVDVMQD-SNGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLVVQ 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILRLA 305 >gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227] Length = 309 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 68 RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 127 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + S+ L ++ H D++L+E++ Sbjct: 128 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENALKL--AFQHDDEVLVEKW 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + + ++ L Sbjct: 186 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 245 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 303 Query: 292 MVEDA 296 ++E A Sbjct: 304 ILELA 308 >gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] Length = 308 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+ FN LHG Sbjct: 13 VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK G+PV S+L ++ + + Sbjct: 73 RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I+PPYV+KP GSS+GI ++ + + P L ++++E Y G E+T Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQLSDE----MPARVMVETYAPGREMTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA +P +I A AH +GC Sbjct: 189 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306 Query: 299 LR 300 R Sbjct: 307 ER 308 >gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 306 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG S +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 306 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + S+ L ++ H D++L+E++ Sbjct: 125 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENALKL--AFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + + ++ L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400] Length = 316 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 186/300 (62%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A +AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P +V R Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRRGEAVD 130 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ ++K + +P L +++ + D +L+E+++ G E+ Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ EI VP ++FY +E KY++ + H+ P +P ++Y+ + AH+A+ Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGETAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297 GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ ++ A+ Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISAA 306 >gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700] Length = 309 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + Sbjct: 70 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 M + P ++KP GSS+G+ +K + + + + ++ +LIE+++ G Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEELESAVDFALKFDR--TVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ L +I VP+ +FY Y+ KY S N+ + PA + + +E++RL A Sbjct: 188 DEFTVPVLDGEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] Length = 306 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617] Length = 306 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD+ Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP + GSS+GI + + + L ++ +++L+E + Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDNEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-TSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 306 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S S+ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 306 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG ID+ + L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD+ Sbjct: 65 RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP + GSS+GI + + + L + ++ D++L+E + Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRVNQASELQAALQE--AFRFDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVIGTDILPSIRIQTA-SEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E] gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E] Length = 307 Score = 354 bits (909), Expect = 9e-96, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + G+ ID L + AFN+LHG Sbjct: 9 IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V R T+D Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP + GSS+G+ + + + + + H D +LIE+++ G Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAVDLAL--THDDTVLIEEWLSG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 IE+T V+ D L +I +P+ +FY Y+ KY S N+ ++ PA + + +E+Q+L A Sbjct: 187 IEMTVPVLDDQVLPAVQI-IPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVKRA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + + +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 246 YDVVGCRGWSRIDVM-TDANGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKILE 304 Query: 295 DAS 297 ++ Sbjct: 305 LSA 307 >gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 308 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 205/303 (67%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG ACA ALE GF+V++IDV R + VL L+PD A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+ + GVPV + ++R + Sbjct: 67 HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +I + P L W +GD+LL+E+YV G ELTC Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ DV EI VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTDVIEI-VPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AAYAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] Length = 318 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 176/303 (58%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL +AGF ID L D FN+LHG Sbjct: 19 IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + IPYT G++ASAL+MDKMR+K + + G+PV +V + Sbjct: 79 RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAVDFALKF--DETVLIEEWLAG 196 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ +L A Sbjct: 197 DELTIPVLDNEVLPAVRI-VPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVKRA 255 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D + +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 256 YDVVGCRGWSRIDVMTDSK-GQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVRILE 314 Query: 295 DAS 297 ++ Sbjct: 315 LSA 317 >gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70] Length = 309 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL AGF ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V + + Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K+ + + + + + D +LIE+++ G Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAV--DFALKYDDTVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L I VP+ +FY YE KY S N+ + P+ + + E+++L A Sbjct: 188 AEFTVPVLDNEVLPSIRI-VPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDGND-AFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 306 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD+ Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP + GSS+GI + + + L ++ ++H ++L+E + Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQTA-SEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 303 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG SAL G D L D FN+LHG Sbjct: 7 VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119 FGEDG +Q LE L +PYT G++ASA++MDK R+K + G+P+ L++ D Sbjct: 67 PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G+ +K+ + + + ++ EQ++ G E T Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAF--EEARKYDKVVIAEQFIGGGEYT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G+ + +I P +++Y Y+ KY ++ + P+ + ++ + LA A + + Sbjct: 185 CAVIGETAYPTIKIE-PATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKVL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG SR DFL D +++ LE N PGMT S+ P A G ++ +L L +++ Sbjct: 244 GCRGWSRVDFLMDEA-GEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCLKVLDT 299 >gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 330 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 142/302 (47%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLS+G+ CA+AL A V ++D + L + PD FN LHG Sbjct: 35 VVVLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHG 94 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSGILASAL++DK R+K + + G+PV SIL + + + Sbjct: 95 RWGEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRA 154 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+GI +++ + P L S + ++++E Y G ELT Sbjct: 155 RHVMPPPYVVKPYNEGSSVGIYIVQDAANGPPQL----SADMPARVMVETYAPGRELTTT 210 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y KY+ S HV+PA+IP I+ A AH+A+GC Sbjct: 211 VMGDRALTVTDIIT--DGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGC 268 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE AA G SF +L W+VEDASC Sbjct: 269 RGISRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASC 328 Query: 299 LR 300 R Sbjct: 329 DR 330 >gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895] Length = 306 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + L + ++ H +++LIE++ Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGMSKV--VEENALQAALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 133/298 (44%), Positives = 192/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L S + ++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQL----SADMPHEVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLMVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 308 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 176/303 (58%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] Length = 306 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSLSSG+ CA+AL GF+V+++D + L L PD+ FN LHG Sbjct: 11 VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV G+PV S+L ++ +++ Sbjct: 71 RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+G+ ++ + P L S + L++E Y G ELT Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRL----SPEMPETLMVETYAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA +P +++ A AH+A+GC Sbjct: 187 VVGDRALTVTDILT--DGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE G SF L WMVEDA+C Sbjct: 245 RGVSRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDATC 304 Query: 299 LR 300 R Sbjct: 305 NR 306 >gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] Length = 313 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 151/305 (49%), Positives = 206/305 (67%), Gaps = 6/305 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVLMGG+S+EREVSL+SG+ CA ALE G +VS++D R + VL+ L KPD+ N LH Sbjct: 10 VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V L +R + Sbjct: 70 GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S+H+I PPYV+KP GSS+G+ ++ + + P+ + W +G+Q+++E Y+ G EL Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+ G +L VT+I P FY YE KY+ S HVLPA +P +++ R A AH Sbjct: 190 AVIGYADGPRALTVTDI-TPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAH 248 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG+SRSDF +D + + LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVED Sbjct: 249 VAMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVED 308 Query: 296 ASCLR 300 ASC R Sbjct: 309 ASCPR 313 >gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] Length = 316 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 183/299 (61%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P +V R Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ ++K + +P L ++ + D +L+E+++ G E+ Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ EI VP ++FY +E KY++ + H+ P +P ++++ + AH+A+ Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDA 296 GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ ++ A Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISA 305 >gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20] gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20] gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] Length = 306 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] Length = 310 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 185/299 (61%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ + + V P + R + Sbjct: 71 RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+KP + GSS+G+ ++KK+ + + ++ + ++L+EQ++ G E+ Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAMKE--AFRYDREILVEQFIKGSEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L EI VPK++FY ++ KYS + H+LPA++P ++Y++V R AH+A+ Sbjct: 189 VGILEDKALGAIEI-VPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G SR DFL + LE+N PGMT +S+ PE+A +G F +L+ ++ A+ Sbjct: 248 GCSGYSRVDFLVTE-EGACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLVERILAAAA 305 >gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810] Length = 306 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] Length = 311 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 151/304 (49%), Positives = 209/304 (68%), Gaps = 6/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+SSER+VSLSSGK CA ALE G +V+++D R + VLA LKPD+ N LHG Sbjct: 10 VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V L +R + + Sbjct: 70 EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I PPYVIKP GSS+G+ ++++ + + S SW +GD +++E Y+ G EL Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREGDAPQPE-PGSDSWTYGDLVMVEPYIPGKELAVA 188 Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ +L VT+I P FY YE KY+ S H LPA +P +++ R + AH Sbjct: 189 VIGEATGPRALTVTDI-TPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHA 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG+SRSDF +D + ++ LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDA Sbjct: 248 ALGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDA 307 Query: 297 SCLR 300 SC R Sbjct: 308 SCPR 311 >gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] Length = 306 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 306 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L + G +D L L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE +IPYT SG++ASA++MDK+RSK + G+P + + R + Sbjct: 65 RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + ++P L + ++ H D +L+E + Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L +I S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGILGDQILPSIKIQ-SASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDGEDN-FQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 312 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 135/307 (43%), Positives = 189/307 (61%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + ++ L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D++++ W +G Q L+E ++ G E+ Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKN--WTYGPQALVEAFIPGREI 184 Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD +L +T+I + DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D + + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASCL 299 VE A+C Sbjct: 305 VEQATCR 311 >gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 306 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L ++G ID +L F LHG Sbjct: 5 VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V + G+PV P + ++R ++ Sbjct: 65 RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ + L + + H D +LIE++ Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKELLPALQE--GFRHDDNVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G + I P FY Y+ KY S + + P+ + +++ LA Sbjct: 183 LSGPEYTVAIVGSQVMPSIRIQ-PAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+ C G R D + D LE+N PGMT S+ P A +AG SF +L+ Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 306 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD+ Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP + GSS+GI + + + L ++ ++H ++L+E + Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L I S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQTA-SEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] Length = 305 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 116/303 (38%), Positives = 183/303 (60%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG S+EREVSL +G A ALE+ G+ V ID D+++ L + D+ F +HG Sbjct: 8 IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG +Q +LEL++IPYT SG+LASAL++DK +K++V+ GV + LV+ Sbjct: 68 RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVNSDVD 127 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 P V+KP++ GS+LGI + + + Q + ++ ++L+E Y+DG E+ Sbjct: 128 DIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAIAQ--ARDYDRRVLVEDYIDGREV 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VM +L + EI VP+S FY Y KY+ + +++PA +P YK +Q+ A ++ + Sbjct: 186 TVSVMNGRALSIIEI-VPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYAS 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG +R DF+ ++LE+N PGMT S+ P+ AA G F +L+ +++DAS Sbjct: 245 LGCRGAARVDFMVT--DDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDAS 302 Query: 298 CLR 300 R Sbjct: 303 LDR 305 >gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] Length = 311 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 144/306 (47%), Positives = 193/306 (63%), Gaps = 7/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH----LKPDLAFN 56 + VL GG SERE+SL SG A AL D G+ V +IDV R + VL L PD FN Sbjct: 7 IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++ G+ V + Sbjct: 67 ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ +H ++ PYV+KP+ GSS G+ ++ +Q + + G + L+E ++ G E Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT V+G +L VTEI VPK+ FY +E KY+ STHVLPA IP ++ V+ + A Q Sbjct: 187 LTVSVLGAVALGVTEI-VPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245 Query: 237 AIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GCRG+SR DF +D S +F LE+N QPGMTP S+ PE AA AG F L+ WM+E Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305 Query: 295 DASCLR 300 DASCLR Sbjct: 306 DASCLR 311 >gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894] Length = 306 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 164/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L++AG +D L D F LHG Sbjct: 5 IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE L +PYT SG++ASA++MDK+R+K + G+PV + + R + Sbjct: 65 RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +++ L ++ H ++L+E++ Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPAL--ELAFEHDSEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S + + PA I + +Q L Sbjct: 183 LSGPEFTVAILGDEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 MDAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDAS 297 ++E A+ Sbjct: 301 ILELAN 306 >gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846] Length = 306 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDALGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] Length = 306 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 174/300 (58%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1] Length = 306 Score = 351 bits (901), Expect = 7e-95, Method: Composition-based stats. Identities = 159/301 (52%), Positives = 225/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA ALE G+ V ++DVD+ + VL L+PD+ FN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGTACADALEKQGYHVIRVDVDQQIATVLKQLQPDIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE +IPYTHSG++ASAL+MDK R+K +V++ GV V PS ++NRF + Sbjct: 66 PFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPSCVMNRFAIGR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP++ GSS G++++ D+++PL + SS W +GD++++E+Y+ G ELTC Sbjct: 126 EHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +LDV EI K FY Y+ KY S H+ PA++ L+IY++VQR++ AH+AIG Sbjct: 186 VLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQRMSLAAHRAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F + ++ WLEIN QPGMTPVS+ P++A +G ++ +++ W+ EDASC+ Sbjct: 246 CRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIVKWIAEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] Length = 306 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GGIS+EREVSL+SG A AL + G+ ID L FN+LHG Sbjct: 8 IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKEYNVANLKKDGFHRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRETFSE 127 Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + P ++KP GSS+G+ +K + + + + + + +LIE+++DG Sbjct: 128 LDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54] Length = 316 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P L++ T Sbjct: 68 RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLDADTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + ++ + ++L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYALAAKF--DAEVLAEQFIQGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G +L V EIA P Y YE KY S ++ + PA +P + +EV +A A Sbjct: 186 VAILGGGKSARALPVIEIAAP-GGNYDYEHKYFSDDTQYFCPAALPPAVAEEVADIAVRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ EL + ++ Sbjct: 245 YRALGCEGWGRADFMLDA-DNRPWLLEMNTSPGMTSHSLVPMAARATGMSYAELCVAILA 303 Query: 295 DASCL 299 DASC Sbjct: 304 DASCK 308 >gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] Length = 312 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 135/307 (43%), Positives = 188/307 (61%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + + L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D++++ W G Q L+E ++ G E+ Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKN--WTFGPQALVEAFIPGREI 184 Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD +L +T+I + DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D + + + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASCL 299 VE A+C Sbjct: 305 VEQATCR 311 >gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 297 Score = 350 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 186/301 (61%), Gaps = 9/301 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL G++V ++D DR + LA L PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + IPYTHSG+LASAL+MDK R+K V G+P S L R + S+H++ Sbjct: 61 DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P + ++ + L++E++V G ELT VMG Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176 Query: 185 ASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 D + V + +Y YE KY+ S HV PAKIP DI A AH A+GCR Sbjct: 177 GEGDPGPLCVTEILTDGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALGCR 236 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE A G F L W+VEDASC Sbjct: 237 GVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDASCN 296 Query: 300 R 300 R Sbjct: 297 R 297 >gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] Length = 316 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P L++ T Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLDADTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + ++ + ++L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARF--DAEVLAEQFITGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L V EIA P Y YE KY S ++ + PA +P ++ EV +A A Sbjct: 186 VAVLGGGKTARALPVIEIAAP-GGNYDYEHKYFSDDTQYFCPATLPPEVAAEVAEIAVQA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +QA+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ Sbjct: 245 YQALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVAILS 303 Query: 295 DASCL 299 +A+C Sbjct: 304 EAACK 308 >gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 167/303 (55%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGKA AL+ G D + L + D F LHG Sbjct: 13 VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++ + G+P + + + + Sbjct: 73 RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPTPRYVELKADSDSG 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS+LG+ +K+ + +S ++ +L E+++ G+ELT Sbjct: 133 KVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAYALASKYDRS--VLAEEFIKGMELT 190 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++ +L + I P ++ Y Y KY + + ++ P + + +++++ A + Sbjct: 191 CAILELDGKPQTLPLIRIIAPDAN-YDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALKS 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +QA+GCRG R D + + F LE+N PGMT S+ P A AG S+ +L L +++ Sbjct: 250 YQALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLLQ 309 Query: 295 DAS 297 A+ Sbjct: 310 SAT 312 >gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] Length = 330 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 32 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 91 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 92 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 151 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 152 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 209 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 210 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 268 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 269 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 327 >gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum SCRI1043] Length = 306 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY YE KY S ++ + P+ + + + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ C G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] Length = 312 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 131/304 (43%), Positives = 195/304 (64%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 7 IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+ + I+V ++ + Sbjct: 67 TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +IK+ + +P+ W LL E ++ G ELT Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ +L VTE+ VP S FY YE KY+ +TH+ PA +P DI + R+A AH+ + Sbjct: 187 VAVLGNRALGVTEL-VPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D + ++ LE+N QPGMTP+S+ PE A + G ++ +L+ +V++A Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305 Query: 297 SCLR 300 + Sbjct: 306 LAGK 309 >gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 306 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+ V P + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGALAL--AFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC+G R D + + + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCKGWGRIDVMLN-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 304 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLSSGK CA+AL AGF ++D ++ L + PD+AFN LHG Sbjct: 9 IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K S G+PV S+L + ++ Sbjct: 69 RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP+ GSS+G+ ++++ + P L + + L++E Y G ELT Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRL----APEMPEILMVETYAPGRELTTT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY + S HVLPA +P +I+ A AH +GC Sbjct: 185 VIGDRALTVTDILT--DGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302 Query: 299 LR 300 R Sbjct: 303 NR 304 >gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031] gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031] Length = 306 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 113/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT ++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY Y+ KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866] Length = 306 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] Length = 316 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 108/303 (35%), Positives = 170/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 18 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + Sbjct: 78 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENAHE 137 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 138 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKF--DNTILIEEWLAG 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G L I VP+ +FY Y+ KY S N+ + PA + + +E+ +L A Sbjct: 196 DELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELAKLVKRA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ A+ G SF +L++ ++E Sbjct: 255 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 313 Query: 295 DAS 297 ++ Sbjct: 314 LSA 316 >gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 306 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + +S L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 15/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVS+ SG AL G D L + D F LHG Sbjct: 13 VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEQFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LE + +PYT G+++S+++MDK+ +K++ S G+P + ++ Sbjct: 73 RYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTPRFLTLDAQATTR 132 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + L + P ++K GS++GI + + + + +L E+++ G Sbjct: 133 EQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCA--RYDKVVLAEEFIRG 190 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V+G +L V EI P+ + Y Y+ KY + ++ ++ PA + ++ + +Q L Sbjct: 191 RELTVPVLGTGSAARALPVIEIRAPEGN-YDYQNKYFTDDTKYLCPAPLDEELTRHLQNL 249 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A A A+GCRG SR DF+ + + + LEIN PGMT S+ P A G S+ +L Sbjct: 250 AVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMSYEDL 309 Query: 289 LLWMVEDAS 297 +++ A+ Sbjct: 310 CCEILQMAA 318 >gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG] gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG] Length = 306 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 113/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SG+A AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 306 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 112/300 (37%), Positives = 169/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 >gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] Length = 306 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG +D+ + L D AF LHG Sbjct: 5 VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SG++ASA++MDK+R+K + CG+PV P + + R MD+ Sbjct: 65 RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + ++ L++ ++ H D +L+E + Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAALVE--AFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L I V S+FY YE KY S ++ + P+ + + E+ + Sbjct: 183 LSGPEYTVAVIGDEILPSIRIKVV-SEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P AG SF +L+ Sbjct: 242 IKAWRALGCSGWGRVDVMM-GGDGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] Length = 311 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL+SG A AL+D GF V ID L FN+LH Sbjct: 11 IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116 G GEDG +Q +LE L IPYT G+++SAL+MDKMR+K + + G+PV +++ R Sbjct: 71 GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130 Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D+Q + + P ++KP GSS+G+ +KK + + + + H D +LIE+++ Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAVDTAL--THDDTVLIEEWLA 188 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E + V+G L I P +FY Y+ KY ++ + P+ + + E++ L Sbjct: 189 GQEFSVPVLGGKVLPSILIK-PAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ +GCRG SR D + D R +E+N PGMT S+FP A GYSF +L++ ++ Sbjct: 248 AYDIVGCRGWSRIDVMTDAQGR-FRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306 Query: 294 EDAS 297 E ++ Sbjct: 307 ELSA 310 >gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 306 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASALAL--AFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 306 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + +S L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 308 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 177/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V VLA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASVLAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 306 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG +D L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV G+ V P + +N ++ Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L +++ + LL+E++ Sbjct: 125 LTDSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD +L I P + FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LHGPEYTVAILGDTALPSIRIQ-PAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+Q++GC G R D + D + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 306 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + +S L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFKDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] Length = 315 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+ AL G D R + L + D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q LEL+ +PYT SG LAS+L+MDK+ +KQV G+P ++ T Sbjct: 68 RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPTPRYAILRPDTDLA 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ P +IKP GS+LG+ + S+ ++ ++ +L EQ++ G ELT Sbjct: 128 SVAAVLDLPLIIKPPHEGSTLGVTKVDGLDSLREAYQLAARYDAD--VLAEQFIVGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G +L V EI P + Y YE KY S ++ ++ PAK+ + ++++A A Sbjct: 186 VALLGGGGSARALPVIEIVAPDGN-YDYEHKYISNDTQYICPAKLDDALSASIRQIAEQA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GC G R+DF+ D K + LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 245 YVALGCEGWGRADFMLDEA-GKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCLEILS 303 Query: 295 DASCL 299 ASC Sbjct: 304 TASCK 308 >gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] Length = 296 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 137/301 (45%), Positives = 194/301 (64%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL+GG S+EREVSLSSG+ CA+AL G++V ++D + + L +KPD+ FN LHG Sbjct: 2 AVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V G+P+ S L ++ + + Sbjct: 62 WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMAD 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+GI ++ + + P L S ++L+E + G EL+ V Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQL----SPEMPQEVLVEAFAPGRELSVSV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +GD +L VT+I +Y Y+ KY S HV+PA+IP++I A AH+A+GCR Sbjct: 178 LGDRALAVTDILT--DGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+D +D + LE N QPGMTP S+ PE AA+ G SF L W+VE+ASC Sbjct: 236 GLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASCG 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 306 Score = 348 bits (893), Expect = 6e-94, Method: Composition-based stats. Identities = 108/303 (35%), Positives = 172/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + + Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENANE 127 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + + +LIE+++ G Sbjct: 128 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKF--DNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G L I VP+ +FY Y+ KY S N+ + PA + ++ +E+ +L A Sbjct: 186 DELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ A+ G SF +L++ ++E Sbjct: 245 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 303 Query: 295 DAS 297 ++ Sbjct: 304 LSA 306 >gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] Length = 292 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 140/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ACA+AL D F V ++D + L + PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE + IPY+HSG+LASAL+MDK RSK V + G+PV SI+ + + H++ Sbjct: 61 DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L + D +++EQ+ G ELT VMG Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDDN----MPDYVMVEQFAAGRELTTTVMGQ 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I + +Y Y+ KY STH++PA IP DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDILT--TGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDESRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292 >gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3] Length = 306 Score = 347 bits (892), Expect = 8e-94, Method: Composition-based stats. Identities = 158/301 (52%), Positives = 223/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P + FN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS ++RF + S Sbjct: 66 SFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYTMSRFAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS GII++ D++ P + SS W H D++++E+Y+ G ELTC Sbjct: 126 KHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ LDV EI FY+Y+ KY S S H+ PA++ L+IY++VQR++ AHQAIG Sbjct: 186 VLGNEVLDVCEIIPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRISLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRGISRSDF F+ + ++ WLEIN QPGMTP S+ P++A +G ++ +++ W+VEDASC+ Sbjct: 246 CRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKWIVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC] gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC] gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] Length = 322 Score = 347 bits (892), Expect = 8e-94, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D + L F LHG Sbjct: 16 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV+ + Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P +E++R+ A Sbjct: 194 CPVLGQGDAAQALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIRRIVVQA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 253 YRTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCLRILA 312 Query: 295 DAS 297 AS Sbjct: 313 SAS 315 >gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] Length = 316 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG +ASAL+MDK +K++ G+P +++ T Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPTPEFEVLDADTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + ++ + +L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARF--DSVVLAEQFIIGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L V EIA P Y YE KY S ++ PA +P + +EV +A A Sbjct: 186 VAVLGSGKGARALPVIEIAAP-GGNYDYEHKYFSDDTQFFCPATLPDGVAEEVAEIAVKA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +QA+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ Sbjct: 245 YQALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVSILS 303 Query: 295 DASCL 299 +ASC Sbjct: 304 EASCK 308 >gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] Length = 337 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D L F LHG Sbjct: 16 VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLGELRREGFARCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 GEDG VQ LELL IPYT G++AS++SMDK+ +K++ + G+P LV T+ Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEETV 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP + GS++G+ + Q+S + ++L EQ+++G E T Sbjct: 136 EALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQAS--RYDPEVLCEQFIEGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L V I P+ + Y Y+ KY + ++ + P+ +P +E+QRL A Sbjct: 194 CPVLGEGAGAHALPVIRIVAPQGN-YDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG +R+D + RK F LEIN PGMT S+ P A G S+ +L + ++ Sbjct: 253 FRTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLLA 312 Query: 295 DAS 297 A+ Sbjct: 313 TAT 315 >gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont] Length = 306 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+RSK + G+P + + R + Sbjct: 65 RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP GSS+GI + + +++P L + ++ H D +L+E + Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAALQE--AFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L I S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGIVGDEILPSIRIQTA-SEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AGYSF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] Length = 306 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S+EREVSLSSG CA+ L + G++V ++D + + LA +PD+ FN LHG Sbjct: 11 IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV G+PV S LV++ Sbjct: 71 RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYVIKP GSS+G+ +++ + P L D++++E + G ELT Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDE----MPDEVMVEAFAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA IP +I+ A AH A+GC Sbjct: 187 VLGDRALTVTDIIT--DGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG +R+DF +D + LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304 Query: 299 LR 300 R Sbjct: 305 NR 306 >gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] Length = 307 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG +SEREVSL+SG A AL G+ +D L + FN+LHG Sbjct: 9 IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V + T S Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP + GSS+G+ + + + + + D +LIE+++ G Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGLTKVDSADKLKSAVDLALKF--DDIVLIEEWLSG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+GD L +I VP+ +FY Y KY S N+ ++ P + + + E++ L A Sbjct: 187 DELTVPVLGDEVLPAVQI-VPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 246 YEAVGCRGWSRIDVMTDSEGN-FRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKILE 304 >gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 306 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L +L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + +P L ++ H D++L+E++ Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSALAL--AFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P ++Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21] gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21] Length = 305 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 128/297 (43%), Positives = 190/297 (63%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA K ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRRGE-EF 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ +++ + L + ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAALDE--AFRYDSEILIEGFIDGREVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI VPK +FY YE KY+ + H+LPA++P +Y EV R AH A+GC Sbjct: 188 ILDGKALGAIEI-VPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302 >gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804] gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii] Length = 326 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ER+VSL SGK AL AG D LA D F LHG Sbjct: 18 VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q LELL +PYT SG +AS+LSMDK+ +K+V G+ +++ Sbjct: 78 RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRTPAFEVLDAQAELR 137 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + Q++ + D++L EQ++ G ELT Sbjct: 138 TVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKEGYAQAAKF--DDEVLAEQFIAGRELT 195 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L V EI P Y YE KY S + + PA +P + EV LA A Sbjct: 196 VAVLGTGAAAHALPVIEIVAP-GGNYDYEHKYFSDETQYFCPADLPDAVAAEVADLAVRA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R DF+ D + + LE N PGMT S+ P A G S+ EL + +V Sbjct: 255 YRALGCAGWGRIDFMLDA-DNRPWLLEANTSPGMTSHSLVPMAAKAIGMSYAELCVSIVS 313 Query: 295 DASCL 299 +A+C Sbjct: 314 EAACK 318 >gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] Length = 308 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 120/299 (40%), Positives = 182/299 (60%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSL SG A AL G+ IDVDR+V + + AF LHG Sbjct: 9 IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ + G+ V P +V R + Sbjct: 69 RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ +++++ + + ++ + ++LIEQ++ G E+ Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESELEAAMQD--AFKYDREILIEQFIKGAEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L EI VPK +FY +E KYS + H+LPA++P D+Y++V R H+A+ Sbjct: 187 VGILEDKALGAIEI-VPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G SR DFL + LE+N PGMT +S+ PE+A +G F EL+ ++ A+ Sbjct: 246 GCSGYSRVDFLVTT-EGLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303 >gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] Length = 332 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D S L F LHG Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P LV+ + Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G +L V I P+ + Y Y+ KY + + + P+ +P +E+QR+ A Sbjct: 194 CPILGQGTEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 253 YRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILA 312 Query: 295 DAS 297 AS Sbjct: 313 SAS 315 >gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18] gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18] Length = 305 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 118/297 (39%), Positives = 191/297 (64%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L G++ IDV R + LA + + AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P +++R + Sbjct: 71 RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRGE-EL 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ ++++ Q + L + ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ ++ EI VPK++FY YE KY+ + H+LPA++P +Y+ V + AH A+GC Sbjct: 188 ILDGRAMGAIEI-VPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + + + LE+N PGMT +S+ PE+A +G F +L+ ++ AS Sbjct: 247 DCYSRVDFLVNEA-GECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302 >gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 313 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 188/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL SG+ A ALE G +V++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +++++ + YTHSG++ S +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W DQLL E ++ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + H+ PA+IP +I + + +A AH+ + Sbjct: 188 TAVIGDRALLVTELR-PKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + +L+ ++ +A Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306 >gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] Length = 306 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L +L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L ++ H D++L+E++ Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLQSALAL--AFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I FY YE KY S + + P ++Q L Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY] gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY] Length = 332 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D S L F LHG Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P LV+ + Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G +L V I P+ + Y Y+ KY + + + P+ +P +E+QR+ A Sbjct: 194 CPILGQGAEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 253 YRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILA 312 Query: 295 DAS 297 AS Sbjct: 313 SAS 315 >gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J] gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J] Length = 331 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L A Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIPADVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 SAS 319 >gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083] gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083] Length = 292 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 137/298 (45%), Positives = 190/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVS SSG+ACA+AL + G++V+++D + L + PD+ FN LHG GE Sbjct: 1 MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V + G+P+ SI+V + ++H++ Sbjct: 61 DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + + P L + + +++E + G ELT VMGD Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGT----MPEMVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH+A+GCRG+S Sbjct: 177 RPLTVTDILT--DGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDESRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292 >gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 158/298 (53%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ ++KP GSS+G+ Q + L S+++ Q+L+EQ++ G E Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD L V E+ P + FY Y+ KY + + + PA + + +Q +A A Sbjct: 189 TITVLGDEVLPVIEMTTP-NGFYDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDQQGN-FYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILEQ 304 >gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] Length = 305 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 127/297 (42%), Positives = 190/297 (63%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA + +LAF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRRGE-EL 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ +++ + L + ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAALDE--AFRYDSEILIEGFIDGREVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI +PK +FY YE KY+ + H+LPA++P +Y EV R AH A+GC Sbjct: 188 ILNGKALGAIEI-IPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302 >gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 293 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 139/299 (46%), Positives = 191/299 (63%), Gaps = 9/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 MGG S+EREVSLSSG+ACA+AL + G+ V +++ DR + VL LKP N LHG +G Sbjct: 1 MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V G+PV SI+ + + + H+ Sbjct: 61 EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++PPYV+KP GSS+G+ ++ ++ + P L + + ++++E + G ELT VMG Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQLSE----DMPAEVMVETFAPGRELTTTVMG 176 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC+G+ Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SR+DF +D + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293 >gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia solanacearum CFBP2957] gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CFBP2957] Length = 331 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L A Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 257 YRGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 TAS 319 >gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] Length = 331 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L + I P+++ Y Y+ KY + ++ + PA I D+ VQ L A Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAADVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 SAS 319 >gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] Length = 313 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ER+VSL SG A AL G+ + +DV +V L+L K DLAF LHG Sbjct: 11 IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ ++ G+ + P V + + Sbjct: 71 RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+KP++ GSS+G+ ++KK + + L + ++ + +L+E+Y+ G E+ Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAALDE--AFRYDTLVLVEKYIKGQEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ + + EI VPK++FY +E KYS + H+ PA++ +Y++VQ+ AHQA+ Sbjct: 189 VGILANQPIGAIEI-VPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297 GC G R DFL + + LE+N PGMT +S+ PE+A AG SF L+ + A+ Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQIACSAA 306 >gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] Length = 323 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V+ Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + P ++KP + GSS+G+ + ++ + ++L EQ++ G E T Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAYELAA--QYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311 >gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13] gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 308 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] Length = 335 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 134/305 (43%), Positives = 208/305 (68%), Gaps = 8/305 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 +AVLMGG S+EREVSL SG A ALE+ G++V+ IDV R +G L + +PD+ FN Sbjct: 29 VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L +PYTHSG+ A+A++MDK +K+++ + G+ ++++R Sbjct: 89 LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148 Query: 118 MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + H + PY++KP+ GS++G+ ++++ Q+ P+ S G+++L+E+++ G E Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GVMGD +L VTEI ++ Y Y KYS+ ++ H LPA IP + +E +R+A LAHQ Sbjct: 209 LTVGVMGDRALTVTEIVF-QAQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267 Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SRSDF +D + +++LEIN QPGMTP+S+ PE AA+ G ++ L+ W+V Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327 Query: 294 EDASC 298 E+A+C Sbjct: 328 ENAAC 332 >gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840] gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840] Length = 308 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 176/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4] gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4] Length = 320 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 112/298 (37%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S EREVSL SG A +AL G + + D L L D F LHG Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHEL--LAFDRVFISLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ L++ + Sbjct: 84 RFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDFA 143 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K+ ++ ++ ++ E++V G E T Sbjct: 144 AVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELAA--KSDPLVIAERFVGGGEYT 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD +L + I VP ++FY +E KY ++ ++ P +P + ++ A A +AI Sbjct: 202 VGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRAI 260 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D R ++LE+N PGMT S+ P A G SF EL++ ++E A Sbjct: 261 GGRGWGRVDFLMDESGRH-YFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317 >gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] Length = 306 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R D Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS+GI + ++P L ++ H D +L+E + Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAALDM--AFKHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L EI S+FY YE KY S ++ +V PA + + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D R LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGR-FQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] Length = 303 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S+EREVSL SG AL+ G D L + F LHG Sbjct: 7 VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 FGEDG +Q LE + +PYT G++ASA+ MDK R+K + G+P+ +L+ + Sbjct: 67 PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ +K + + + ++ E +V G E T Sbjct: 127 AVEAQLGLPLFVKPATEGSSIGVTKVKHPGELRAAY--EEARRYDKLVIAEAFVGGGEYT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C ++GD +L +I P ++FY Y+ KY ++ + P+ + ++ + LA A + + Sbjct: 185 CAIIGDKALPTIKIE-PATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAFKVL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D ++ LE+N PGMT S+ P A G S+ EL L +++ A Sbjct: 244 GGRGWGRVDFLMDEAGG-IYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDMA 300 >gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D] gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D] Length = 331 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L + I P+++ Y Y+ KY + ++ + PA I +D+ VQ L A Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 SAS 319 >gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] Length = 315 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 306 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G ID L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R + Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS+GI + ++P L ++ + + +L+E + Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L EI S+FY YE KY S ++ +V PA++ + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D R LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGR-FQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] Length = 316 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 189/310 (60%), Gaps = 14/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAF 55 + VLMGG S+EREVSLS+G+ CA AL GF V ++D + L ++PD+ F Sbjct: 11 VVVLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVF 70 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K + + G+PV SI+ + Sbjct: 71 NALHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPK 130 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + H+++ PYV+KP GSS+G+ ++ + + P L + D++++E Y G Sbjct: 131 EAVVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHLSD----DMPDEVMVETYAPGR 186 Query: 176 ELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+GDA D + V +Y Y+ KY S HV+PA+IP +I+ +A Sbjct: 187 ELTVSVLGDAPGDPGALTVTDILTDGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246 Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AH +GC+G+SR+D+ +D + LE+N QPGMTP S+ PE G SF +L Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306 Query: 291 WMVEDASCLR 300 W+VEDA+C R Sbjct: 307 WLVEDATCDR 316 >gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1] gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1] gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33] gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1] gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94] gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99] gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] Length = 308 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21] Length = 297 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 171/297 (57%), Gaps = 10/297 (3%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG G Sbjct: 2 LLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDS 120 EDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T +D Sbjct: 62 EDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDP 121 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + + P ++KP GSS+G+ +K + + + + + + +LIE+++ G EL Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAGDEL 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A+ A Sbjct: 180 TVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 294 >gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 306 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 157/301 (52%), Positives = 220/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + VL L+P + FN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPHIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R + S Sbjct: 66 SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ G ELTC Sbjct: 126 QHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD LDV EI FY Y+ KY S S H+ PA++ L+IY++VQR++ AHQAIG Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC+ Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] Length = 308 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG ++ERE+SL SG+A AL+ G V ID D ++ L D AF +LHG Sbjct: 15 VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119 GEDG +Q LE + +PYT SG+L SAL MDK R K + CG+P +L+ + + Sbjct: 75 RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS+G+ ++ + + ++ + +L E+++ G+ELTC Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERAWRAAAEF--DSLVLAERWIQGMELTC 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++G +L + P + FY YE KYS+ ++ + P+ + ++ ++ LA A +G Sbjct: 193 AILGHEALPTIRLETPHA-FYDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D + D + + F LEIN PGMT S+ P A AG F +L+ ++E + Sbjct: 252 ASGWGRVDMMLDG-TGQPFLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILETS 307 >gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10] gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1] gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92] gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10] gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str. 91001] gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia pseudotuberculosis IP 32953] gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92] gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004] gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038] gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 306 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + L++ ++ H +LIE++ Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVE--AFQHDSDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I P FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LSGPEFTVAILGDEVLPSIRIQPP-GVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ A+ C G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILMLA 305 >gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688] gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688] Length = 320 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 112/298 (37%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S EREVSL SG A +AL G + + D L L D F LHG Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHEL--LAFDRVFISLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ L++ + Sbjct: 84 RFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDFA 143 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K+ ++ ++ ++ E++V G E T Sbjct: 144 AVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELAA--KSDPLVIAERFVGGGEYT 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD +L + I VP ++FY +E KY ++ ++ P +P + ++ A A +AI Sbjct: 202 VGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRAI 260 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D R ++LE+N PGMT S+ P A G SF EL++ ++E A Sbjct: 261 GGRGWGRVDFLMDEAGRH-YFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317 >gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] Length = 296 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG S+EREVSL SG+ CA+AL G++V ++D V L + PD+ FN LHG Sbjct: 2 AVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K + G+PV S L + + + Sbjct: 62 WGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+G+ ++ ++ + P L ++ + +++EQ+V G ELT V Sbjct: 122 HVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDET----MPEVVMVEQFVPGRELTATV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MG +L VTEI +Y Y+ KY + S H+ PA++P DI + A AH A+GCR Sbjct: 178 MGGRALGVTEILT--DGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE G SF + WMVEDASC Sbjct: 236 GVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASCD 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M] gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M] Length = 315 Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] Length = 331 Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D+ VQ L A Sbjct: 198 CAVIGEGESATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 257 YRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 TAS 319 >gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] Length = 303 Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats. Identities = 130/303 (42%), Positives = 188/303 (62%), Gaps = 6/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVL+GG SSER VSL SG+A AL + G V+ IDV + +A LK PD+ FN Sbjct: 3 VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L +PYTHSGI ASA++MDK ++ ++++ G+PV +V Sbjct: 63 LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKP+ GSS+G+ +++ + ++ ++ W G + L+E ++ G EL Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEIART--WRFGKEALVESFIPGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T GVMGD +L VT+I ++ FY +E KY + S HV+PA++P + A AHQ Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC+G SR+DF +D + + LE+N QPGMTP S+ PE AAY G S+ EL WMV +A Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300 Query: 297 SCL 299 Sbjct: 301 LAR 303 >gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28] gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 308 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis] gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] Length = 306 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 154/301 (51%), Positives = 219/301 (72%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSER VSLSSG ACA LE G+ V ++DVD + VL L+P FN LHG Sbjct: 6 VTVLMGGWSSERSVSLSSGTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ + Sbjct: 66 PFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP++ GSS G++++ D+++PL + ++ W + D++++E+YV G ELTC Sbjct: 126 EHPMKPPYVIKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD LDV EI + FY Y+ KY S S H+ PAK+ +IY+ VQR++ AHQAIG Sbjct: 186 VLGDEVLDVCEIVPKECFQFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC+ Sbjct: 246 CRGVSRSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N] gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N] Length = 317 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D L + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q LELL IPYT SG+ ASAL+MDK+ +K+V G+P ++ T Sbjct: 68 RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPTPAFEEIDSDTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + +S + + +L EQ+V G ELT Sbjct: 128 RVPDRLGLPLILKPPHEGSTVGITKVAACADMEQAYAAASHF--DEVVLAEQFVRGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G +L V EI P + Y Y+ KY + + + PA +P+ + ++++++A A Sbjct: 186 VALLGSGRNARALPVIEIVAPDGN-YDYQNKYFTDVTQYFCPADLPVGVAEQIEKIAVQA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ EL + ++ Sbjct: 245 YRALGCEGWGRADFILDGQ-NQPWLLEMNTSPGMTSHSLVPMAARAVGMSYAELCVAILA 303 Query: 295 DASCL 299 DASC Sbjct: 304 DASCK 308 >gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1] gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] Length = 306 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 164/301 (54%), Positives = 225/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGTACADVLEAQGYRVSRVDVDGHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS +++RF + Sbjct: 66 PFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPSCVMSRFAVGK 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSSLG+I++K+++S+P + S W + D +++E+Y+ G ELTC Sbjct: 126 EHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 VMG+ +LDV EI FY Y+ KY S S HV PA++ +IY+ VQR++ AHQAIG Sbjct: 186 VMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF FD + ++ WLEIN QPGMTP S+FP++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] Length = 323 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V T Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G+ + ++ + ++L EQ++ G E T Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA--QYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAQAGALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311 >gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60] Length = 306 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L++AG +D R L + F LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + ++R D Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + L+++ H D++LIE++ Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPALVEAL--RHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I FY YE KY S + + P+ + + + + L Sbjct: 183 LAGPEYTVAFIGDEILPSIRIQAA-GAFYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 RRAYKALGCSGWGRVDVMQDAA-GEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330] gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330] gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] Length = 308 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] Length = 323 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V T Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G+ + ++ + ++L EQ++ G E T Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA--QYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311 >gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 312 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 159/305 (52%), Gaps = 9/305 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D L D F LHG Sbjct: 6 VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG VQ LELL IPYT SG++AS++SMDK+ +K++ G+ V T Sbjct: 66 RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G + +S H +L EQ++ G E+T Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQCDAAYALAS--QHDSHVLCEQFIAGDEVT 183 Query: 179 CGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V G +L V I P+ + Y Y+ KY + + +++PA +P + +Q L A Sbjct: 184 CPVWGPSSAPEALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCKA 242 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +Q +GCRG +R+D + D +R + LEIN PGMT S+ P A+ AG S+ EL + +++ Sbjct: 243 YQVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLLQ 302 Query: 295 DASCL 299 + Sbjct: 303 STATD 307 >gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] Length = 334 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D +S L F LHG Sbjct: 18 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++ASA++MDK+ +K++ G+P LV+ + Sbjct: 78 RHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 137 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q L + P ++KP + GS++G+ + +S + ++L EQ+++G E T Sbjct: 138 QALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIEGEETT 195 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P +P +E+QRL A Sbjct: 196 CPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPCGLPEQEEREIQRLVVEA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 255 FRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILA 314 Query: 295 DAS 297 AS Sbjct: 315 GAS 317 >gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C] Length = 306 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P +AFN LHG Sbjct: 6 IAVLMGGLSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPHIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R + S Sbjct: 66 SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ G ELTC Sbjct: 126 QHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD LDV EI FY Y+ KY S S H+ PA++ L+IY++VQR++ +AHQAIG Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLVAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC+ Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI] gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Pelotomaculum thermopropionicum SI] Length = 318 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +AL+ + +IDV V + + DLAF LHG Sbjct: 5 VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L+IPYT SG+LASAL+MDK +K+++ G+P P +LV + Sbjct: 65 RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L + P V+K GS++G+ + K++ + L ++++ L+EQ Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182 Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G E+T ++G+ +L + EI V + Y Y+ KY++ S H++P +IP + Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEI-VSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAI 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LA +++GCRG++R DF+ D F LE+N PGMT S+FP+ A AG F + Sbjct: 242 KKLAVSTFKSLGCRGLARVDFIVDKQGN-PFILEVNTIPGMTATSLFPDAARAAGIEFPD 300 Query: 288 LLLWMVEDA 296 L+ +VE A Sbjct: 301 LIEKLVELA 309 >gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] Length = 331 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARLDRD--VMAEQFIEGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP ++ VQ L A Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 257 YRSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 TAS 319 >gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] Length = 307 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+ AG +D L F LHG Sbjct: 6 VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + ++R D Sbjct: 66 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + L+++ H D++LIE+ Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVNEPCEFDPALVEAL--RHDDEILIEKC 183 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I +FY YE KY S + + P+ + + + + L Sbjct: 184 LVGPEYTVAFIGDEILPSIRIKAA-GEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D R LE+N PGMT S+ P A AG SF +L++ Sbjct: 243 KRAYQALGCSGWGRVDVMQDESGR-FCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301 Query: 292 MVEDA 296 ++E A Sbjct: 302 ILELA 306 >gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] Length = 302 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG S+ER VSL+SG A AL AG+ V+ +DV R V +A L +PD+ FN Sbjct: 5 VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK +K V +PV P ++ +R + Sbjct: 65 LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ ++ PYV+KPL GSS+G+ ++ + + W +G Q+++E+++ G EL Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTSETNDLP--FSRDDWPYGRQVMVERFIPGREL 182 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T GVMGD +L VTEI FY Y+ KY+ S H++PA + +++ + Q L+ LAHQA Sbjct: 183 TVGVMGDKALGVTEIVTDH-RFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG+SR+D FD ++ LE+N QPGMT S+ PE A +AG SF +L+ W+VE A Sbjct: 242 LGCRGVSRADLRFD--GETLYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETAQ 299 Query: 298 CL 299 C Sbjct: 300 CD 301 >gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 306 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 155/301 (51%), Positives = 222/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER +SLSSG ACA LE+ G++VS++DV + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSISLSSGAACADVLEEQGYRVSRVDVGAHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS ++NRF++ Sbjct: 66 PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPSRIMNRFSIGK 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS G++++++++++P + S W + D++++E+Y+ G ELTC Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ LDV EI FY Y+ KY + S H+ PAK+ L+IY+ VQR++ AHQAIG Sbjct: 186 VLGNEVLDVCEILPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] Length = 306 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 155/301 (51%), Positives = 221/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSLSSG ACA LE G+ V+++DVD + +L L+P +AFN LHG Sbjct: 6 IAVLMGGVSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV PS ++NRF + Sbjct: 66 SFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAPSYVMNRFAIGV 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS G++++ D+ P + SS W + D++++E+Y+ G ELTC Sbjct: 126 KHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD LDV EI FY Y+ KY + S H+ PA++ L+IY++VQR++ AHQAIG Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC+ Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDIVKWIVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 335 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D +S L F LHG Sbjct: 19 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV+ + Sbjct: 79 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 138 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q L + P ++KP + GS++G+ + +S + ++L EQ++DG E T Sbjct: 139 QALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIDGEETT 196 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P +E++RL A Sbjct: 197 CPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEQEEREIRRLVVEA 255 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 256 FRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILA 315 Query: 295 DAS 297 AS Sbjct: 316 GAS 318 >gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 321 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE G V++ID+DR V +A KPD+ FN LHG Sbjct: 9 VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 69 VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G ELT Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G +L VTE+ V +S FY +E KY+ + HV PA+IP D+ + R A AH+ + Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D +F LE N QPGMTP+S+ PE A Y G S+ +L+ ++ DA Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307 Query: 297 SCLR 300 R Sbjct: 308 LADR 311 >gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] Length = 315 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 13 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 73 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WM+EDAS Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 312 Query: 298 CLR 300 CLR Sbjct: 313 CLR 315 >gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] Length = 321 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 131/300 (43%), Positives = 190/300 (63%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W H ++LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306 >gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355] Length = 305 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 117 -----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T + + P +KP GSS+GI + + +P L ++ H D +L+E + Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L +I S+FY YE KY S ++ + PA + + E+Q+L Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L++ Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299 Query: 292 MVEDA 296 ++E A Sbjct: 300 ILELA 304 >gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941] gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19] gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str. 9-941] gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] Length = 308 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WM+EDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa] Length = 326 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG AL G D L D F LHG Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV T Sbjct: 76 RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + + + +S + ++L E++++G E T Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + ++ + P+ +P + E++R+ A Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 253 FRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILA 312 Query: 295 DAS 297 A+ Sbjct: 313 SAA 315 >gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] Length = 306 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +++ ++KP GSS+G+ Q + L+ ++ Q+L+EQ++ G E Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDALIN--AFKFDSQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P + FY Y+ KY S + + PA + +++Q ++ A Sbjct: 189 TVTVLGDEVQPVIEMTTP-NGFYDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304 >gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061] gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus nematophila ATCC 19061] Length = 306 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+ +PV P + +N Sbjct: 65 RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D + P ++KP GSS+G+ + + L ++ + +L+E++ Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGMTKVNDYAELRGALAL--AFKYDTDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G +GD +L I P FY Y+ KY S + + P+ + ++ +E+ +A Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDV-FYDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GCRG R D + D + LE N PGMT S+ P A AG+SF +L++ Sbjct: 242 SEAYKALGCRGWGRVD-IMDDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] Length = 305 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 164/296 (55%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL + D L D AF LHG Sbjct: 9 VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K + + G+P +L++ + Sbjct: 69 RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + L+ P ++KP + GS++G+ + + ++ + +L E+++ G ELT Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAYELAA--QYDALVLAEEFIVGKELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L + I + + Y Y+ KY S ++ + P+ + ++ E+Q A A++ + Sbjct: 187 VAILGETPLPIVRIEI-TGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKVL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GC G R D + + + ++LE+N PGMT S+ P A AG SF +L++ +++ Sbjct: 246 GCHGWGRVDLILT-QTGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILD 300 >gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] Length = 316 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 132/300 (44%), Positives = 191/300 (63%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W H D+LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306 >gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] Length = 320 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 4/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL SG A +AL+ G + D L L +AFNVLHG Sbjct: 22 VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQA+L+ + IPYT G+ ASAL MDK R K + + G+PV +++ T Sbjct: 82 TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPVPDFAVLHDDTDFA 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ +P + + +++ E++VDG E T Sbjct: 142 AVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEYT 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G +L I +P ++FY Y+ KY ++ + P+ + E++RLA +AI Sbjct: 202 CAVLGQQALPSIRI-IPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEAI 260 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G RG R DF S K++ LEIN PGMT S+ P+ AA G F +L + ++ A+ Sbjct: 261 GGRGWGRVDF-LRSQSGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318 >gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 306 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL+++G D L L + F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ + D Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ ++ ++KP GSS+G+ Q + L ++ +Q+L+EQ++ G E Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDALAN--AFKFDNQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P + FY Y+ KY S + + PA + K +Q ++ A Sbjct: 189 TITVLGDDVQPVIEMTTP-NGFYDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILEQ 304 >gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 306 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L +AG +D +L AF LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LEL IPYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124 Query: 116 --FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 DSQ + + P ++KP + GSS+G+ + +S LD + ++ H D++LIE++ Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGMSKVS--ESRALDAALALAFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L I P FY YE KY S + + P +E++ L Sbjct: 183 LSGPEFTVAVVGEEILPSIRIQ-PAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D +++ LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] Length = 359 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL IPY Sbjct: 66 KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R + + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192 GSS+GI + ++ +P L ++ + +LLIE+ ++ E+ C V+G+ + + + Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIEKGIEAREIECSVLGNENPEASVAGE 243 Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP ++FY Y KY S ++PA +P + +E+++LA A++A+ RG++R DFL D Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFLMD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V+ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 304 RNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348 >gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] Length = 312 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 108/303 (35%), Positives = 161/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL+ G D L D F LHG Sbjct: 13 VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFDPRDKPLHDLEV--FDRVFINLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG +Q LE+L IPYT SG++ASA+ MDK R+K + + V LV Sbjct: 71 RYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNVITPDFELVTATSDFA 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSSLGI +K+ + ++ ++ E++++G E T Sbjct: 131 AIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA--EADPLVIAEKFINGGEYT 188 Query: 179 CGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G++GD +L + I VPK++FY +E KY ++ ++ P + + ++Q+ A Sbjct: 189 VGIIGDGKGGYQALPIIRI-VPKNEFYDFEAKYLRDDTEYLCPCGLSAEKEAQIQQEALQ 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + IGCRG R DFL D ++LE+N PGMT S+ P A AG SF +L++ ++ Sbjct: 248 AFRTIGCRGWGRVDFLMDDAGNH-YFLEVNTSPGMTDHSLVPMAAKAAGISFEQLVVRIL 306 Query: 294 EDA 296 E A Sbjct: 307 ELA 309 >gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] Length = 338 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+ERE+SL SG+ AL G D L + F LHG Sbjct: 24 VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDISELKKDEFARCFIALHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG++AS++++DK+ +K+V+ + G+P +L+ R + S Sbjct: 84 RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGS 143 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSS+G+ + + + + Q+ + +L EQ++ G Sbjct: 144 ADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDAD--ILCEQFISG 201 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+G +L V I P + Y Y+ KY + + +++P +P +Q+L Sbjct: 202 DEVTCPVLGTGSEARALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPCGLPEGEEAVIQQL 260 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++ + CRG +R+D + D ++RK + LEIN PGMT S+ P A AG S+ +L + Sbjct: 261 VLQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYEDLCI 320 Query: 291 WMVEDAS 297 +++ + Sbjct: 321 EVLKTTA 327 >gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 183/309 (59%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+A AL + G+ V +IDV + + + +LAF LHG Sbjct: 5 VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++ G+P ++ R + Sbjct: 65 KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124 Query: 119 --------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L+ P V+K GS++GI + + + + + +S ++ +L+E+ Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQD--VLVEK 182 Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G+E+T V+G+ +L + EI + Y Y+ KY+ S H++P ++P + ++ Sbjct: 183 FISGMEVTASVLGNQDPVALPLIEI-TSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKI 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LA A Q +GCRG+ R DF+ +V+ LE+N PGMT S+FP+ A YAG F + Sbjct: 242 KQLAVKAFQVLGCRGLGRVDFMV--QGSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQ 299 Query: 288 LLLWMVEDA 296 L+ +V+ A Sbjct: 300 LVDKLVKLA 308 >gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1] Length = 291 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 13/291 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A +GC+G R D + D + + LE N PGMT S+ P A AG Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 >gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] Length = 321 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 128/300 (42%), Positives = 188/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G KV++ID+DR+V LA K D+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ + Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ PKS FY ++ KY+ + HV PA IP DI + + +A AHQ + Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D ++ LE+N QPGMTP+S+ PE AA G + L+ +VE+A Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306 >gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] Length = 297 Score = 341 bits (876), Expect = 6e-92, Method: Composition-based stats. Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 10/297 (3%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG G Sbjct: 2 LLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122 EDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 62 EDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAELDP 121 Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP GSS+G+ +K + + + + + + +LIE+++ G EL Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAGDEL 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ + L I VP+ +FY YE KY S N+ + PA + + +E+ L A+ A Sbjct: 180 TVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 294 >gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1] gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR NE0994 [Aromatoleum aromaticum EbN1] Length = 309 Score = 341 bits (876), Expect = 6e-92, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 163/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A +AL+ AG D + +L D AF LHG Sbjct: 13 VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P ++ T Sbjct: 73 RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPTPRYAILAGDTDWE 132 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP+ GSS+G + + +++ + D +L E+++ G ELT Sbjct: 133 AVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAAWERAARF--DDLVLAEEFIVGAELT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +L V I P Y Y+ KY + + ++ P+ +P + + +Q L + +A+ Sbjct: 191 VPFLAERALPVIRIEAP-GGKYDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + + + LE+N PGMT S+ P A G F L L ++EDA Sbjct: 250 GCRGWGRADLMLTG-DGRPYLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306 >gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 183/308 (59%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV+ GG S ER++SL +GKA ALE G V +D + + L + D+AF LH Sbjct: 5 VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++ GV +++R D Sbjct: 65 GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124 Query: 120 SQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P V+KP GSSLG+ +IKK +++ + +++ + +++L+E+ Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAV--DTAFEYDNEVLVEK 182 Query: 171 YVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 Y+ G E+T G++G+ L V I PK+ Y +E KY+ + V+PA++ +IY + Q Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A++ + C G++R+D + K + LE+N PGMT S+ P+ A AG F EL Sbjct: 243 KIANKAYRVLKCSGMARADLIVSK-EGKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301 Query: 289 LLWMVEDA 296 +L ++E A Sbjct: 302 VLEILEYA 309 >gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 359 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R + + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192 GSS+GI + ++ +P L ++ + +LLIE+ ++ E+ C V+G+ + + + Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIEKGIEAREIECSVLGNENPEASVAGE 243 Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP ++FY Y KY S ++PA +P + +E+++LA A++A+ RG++R DFL D Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFLMD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V+ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 304 RNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348 >gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] Length = 326 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG AL G D L D F LHG Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV T Sbjct: 76 RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + + + +S + ++L E++++G E T Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLAS--RYDPEVLCEEFIEGDETT 193 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + ++ + P+ +P + E++R+ A Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRA 252 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 253 FRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILA 312 Query: 295 DAS 297 A+ Sbjct: 313 SAA 315 >gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] Length = 305 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 164/296 (55%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A +AL+ + D L D F LHG Sbjct: 9 VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFDPAGQPLENLLQQGFDRVFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LEL+E+PYT SGILASAL+MDK R+K + + G+ ++++ + Sbjct: 69 RYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASSRFR 128 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P +IKP + GS+LG+ + +Q ++ + +L EQ++ GIELT Sbjct: 129 DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAYQAAA--EYDSLVLAEQFIQGIELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + I V + Y Y+ KY S ++ + P+ + + +Q A AH+ + Sbjct: 187 AAILDDMPLPLVRIDVAE-GLYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYAHRIL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E Sbjct: 246 GCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILE 300 >gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 306 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA +AL G ID L L L D F LHG Sbjct: 8 VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q L L+IPYT S +L+SA++MDK ++KQ+ S +P ++ + D Sbjct: 68 RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S ++KP+ GSSLG+ + + + L + ++ +L+E ++ G Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKAL--TEAFKFDQTVLLETWITG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L + + FY Y+ KY S ++ + P + + E+ +LA A Sbjct: 186 QEYTVSILNGKALPAIRMHT-NNTFYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIGCRG R DF+ D + + LE+N PGMT S+ P+ A AGY F +L + +++ Sbjct: 245 FAAIGCRGWGRVDFMLDKS-GQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTIEILK 303 Query: 295 D 295 Sbjct: 304 Q 304 >gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 179/309 (57%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+EREVSL +G+A AL G++V +IDV ++ + D+AF LHG Sbjct: 5 IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++ +P L+ R + ++ Sbjct: 65 KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V+K GS++GI + ++ +P L ++ + LIEQ Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLPDAL--EEAFRYDPIALIEQ 182 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G E+T V+G+ +L + EI V + Y Y+ KY+ S H++P ++ ++ K V Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEI-VSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNV 241 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q LA + +GC G++R DF+ D S + LEIN PGMT S+ P+ A AG SF + Sbjct: 242 QELAVKVFKTMGCSGLARVDFIVDANSN-PYILEINTIPGMTETSLAPDAARAAGISFTD 300 Query: 288 LLLWMVEDA 296 L M++ A Sbjct: 301 LTDRMIKFA 309 >gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] Length = 306 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A +AL D G D L L D F LHG Sbjct: 11 VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ F Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ ++KP GSS+G+ + + L ++++ Q+L+EQ++ G E Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E++ P + FY Y+ KY S ++ + PA + +++Q +A A Sbjct: 189 TITVLGDEVQPVIEMSTP-NGFYDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQ-GHFYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304 >gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] Length = 318 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + + ++ + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAAWQDAA--QYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A A+ Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] Length = 303 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 163/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+A +AL + G D + L D AFN+LHG Sbjct: 7 VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LE L I YT G+LASA+ MDK R K + G+PV ++ + Sbjct: 67 IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPVPDYEVLREDSDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ IK + L + + +++ E+++ G E T Sbjct: 127 AVERKLGLPLFVKPANEGSSVGVVKIK--EKGRLKNVYRELRQYKGEIIAEKFIGGGEYT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C ++G +L I +P ++FY E KY ++ ++ P+ + K+++ L A AI Sbjct: 185 CAILGGEALPSVRI-IPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRAFDAI 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D + +++ LE N PGMT S+ P+ AA AG F +L L +++ A Sbjct: 244 GGRGWGRIDFLKDK-NGRLYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQTA 300 >gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] Length = 631 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 158/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A ++L +G D L D F LHG Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LELL IPYT SG++AS+L MDK RSK V + G+PV +++ + + Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P +KP GSS+GI +K + +++ H ++ E+++ G E T Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAA--RHDPLVIAERFIGGGEYT 512 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD L V +I P ++FY +E KY ++ + P+ + ++Q LA A I Sbjct: 513 VAILGDQVLPVIKIE-PANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G +G R DFL + + LE N PGMT S+ P A AG SF EL+L ++ A Sbjct: 572 GGQGWGRVDFLMSEA-GQPYVLEANTSPGMTDHSLVPMAARQAGISFDELVLRVLGMA 628 >gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48] gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48] Length = 318 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEQDCV 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + +Q + ++ + Q+L+EQ++ G E T Sbjct: 140 AASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] Length = 301 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG +AL+ G D L D AF LHG Sbjct: 7 VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQPLDALK--GYDRAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q LE++ IPYT SG+LASAL+MDK R+K + + G+ + L+ + Sbjct: 65 RHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDFA 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + + P +KP + GSS+G+ +K+ ++ +++ H ++ E+ V G E T Sbjct: 125 DIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEYT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD ++ + +I P +++Y YE KY+ ++ ++ P +P E+++ A A + + Sbjct: 183 VGIIGDEAMPIIKIE-PATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRIL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G RG R DFL D K ++LE+N PGMT S+ P A G + L+ ++E A+ Sbjct: 242 GGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299 >gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans] gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans] Length = 334 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 160/308 (51%), Gaps = 13/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK +AL+ G D LA K D F LHG Sbjct: 15 VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLAELAAEKFDRVFIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 ++GEDG +Q LE L IPYT G++ASA+SMDK+ +K+V S GVP +++ T + Sbjct: 75 SYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTSA 134 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L P ++K GS++GI ++ + + + + +L+EQ+V G Sbjct: 135 AQLQSVAAEFGLPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYE--AVVLVEQFVKG 192 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V+G +L + EI P+ + Y YE KY S ++ ++ PA K VQ L Sbjct: 193 RELTVPVIGSGRNARALPIVEIRAPQGN-YDYEHKYFSNDTEYLCPAPFDEAFTKRVQAL 251 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A A+GC G SR DF+ + F LEIN PGMT S+ P A AG + +L + Sbjct: 252 AVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLCI 311 Query: 291 WMVEDASC 298 ++ A Sbjct: 312 EILRSAKT 319 >gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] Length = 292 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 138/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+ER+VSLS+G+ CA+AL DA V ++D V L + PD+ FN LHG +GE Sbjct: 1 MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG +Q +LE L+IPYTHSG+LASAL++DK R+K V G+PV SIL + + + H++ Sbjct: 61 DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+GI ++ + + P L + D++++E + G ELT VMGD Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLAD----DMPDEVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KY+ S H LPA IP+DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDIIT--DGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+ G +F E W+VEDASC R Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292 >gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana) tropicalis] Length = 334 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG AL G D + L F LHG Sbjct: 20 VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHASLADLKTHGYTRCFIALHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ G+P LV T Sbjct: 80 RHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAAETA 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 140 QALAALGAPMIVKPAREGSTIGLTKVTSPGQCQQAYRLAA--QHDPEVLCEQFIDGDETT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L V I P+ + Y Y+ KY + + + P+ +P + +QRL A Sbjct: 198 CPVLGQGASATALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEERAIQRLVERA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG S+ L L ++ Sbjct: 257 YRTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALCLRILA 316 Query: 295 DAS 297 AS Sbjct: 317 SAS 319 >gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] Length = 304 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SG ASAL G+ VS ID D ++ + PD+ FN LHG Sbjct: 9 VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V + G+PV S+LV++ + + Sbjct: 69 RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PYV+KP GSS+G+ ++ + + D L++E+++ G ELT Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDKPISTIKEELP----DTLMVEEFIPGYELTVT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VT I +Y ++ KY + S H +PA +P +I+ A AH+ + C Sbjct: 185 VLDGNALTVTNIIT--DGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AAY G SF +++ WMVEDASC Sbjct: 243 RGLSRTDFRWDENLGLSGLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDASC 302 Query: 299 LR 300 R Sbjct: 303 NR 304 >gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 321 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 129/302 (42%), Positives = 193/302 (63%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL SG+ ALE+AG++V+ +D+DR + L KPD+ FN LHG Sbjct: 7 VVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +++L+ I YTHSG+ ASA+++DK +K++++ +P+ LV R ++ + Sbjct: 67 TPGEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYT 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ +I + + P+ Q W + LL E ++ G ELT Sbjct: 127 KDPLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 VMGD +L VTE+ P + FY Y+ KY+ +TH+ PAKIP +I ++ L+ AHQ + Sbjct: 187 VAVMGDKALAVTEL-CPNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLL 245 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D + +F LE+N QPGMTP+S+ PE A G + L +VE+A Sbjct: 246 GCRGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305 Query: 297 SC 298 Sbjct: 306 LA 307 >gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] Length = 313 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV LA K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCE 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ ++ +++ ++ + Q+L+EQ++ G E T Sbjct: 135 AAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAAWQDAA--RYDSQVLVEQWIAGPEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P S FY Y+ KY + ++ + +P + + E++ L A +A+ Sbjct: 193 VAVLRGEVLPPIGLGTPHS-FYDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 252 GTQGWARADVMQDAS-GQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310 Query: 299 LR 300 R Sbjct: 311 AR 312 >gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] Length = 306 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG++ + L++AG +D L AF LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+ +PV P +N + Sbjct: 65 RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124 Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP GSS+G+ + + L ++ H +L+E++ Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGAL--ELAFQHDTDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I P+ FY Y+ KY S + + P+ + + E+ +A Sbjct: 183 LLGPEYTVAFLGDEVLPSIRIQAPEV-FYDYDAKYLSNETKYFCPSGLSAEKELELAEIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + + LE+N PGMT S+ P A +G SF +L++ Sbjct: 242 SKAYKALGCSGWGRVD-IMDDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 180/304 (59%), Gaps = 14/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSEREVSL +G A AL G+ V +ID+DR++ L D AF LHG Sbjct: 3 IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P I + Sbjct: 63 KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIPTPNYIAFSFDENPN 122 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P VIK + GS++GI + Q +P + + QLL+E+++ Sbjct: 123 FEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVL--EIDKQLLVEEFI 180 Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G+E+T V+G++ L + EI V K+ FY YE KY+ S H++P +I ++ ++ Sbjct: 181 EGVEVTASVLGNSNPVVLPLIEI-VSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAIE 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A ++A+GCRG +R DF+ D + + LE+N PGMT S+FP+ A G SF +L+ Sbjct: 240 YARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDLV 299 Query: 290 LWMV 293 ++ Sbjct: 300 EKIL 303 >gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15] gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter metallireducens GS-15] Length = 627 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 122/300 (40%), Positives = 184/300 (61%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ERE+SLSSG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ ++ G+ + P ++ R Sbjct: 71 RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 I P V+KP + GSS+G+ ++KK L +++ + +++L+E++V G E+ Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKA--EELAAALEAAFRYDNEILVEKFVKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ EI VPK +FY +E KY+ + H+ P +P D+Y+++ AH+A+ Sbjct: 189 VGILDDRAMGAIEI-VPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297 GC G SR DFL F LE+N PGMT +S+ PE+A AG +F EL+ ++ AS Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306 >gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] Length = 308 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V +L LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Y+ G ELTC Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 313 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 12/309 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVLMGG+S+ER+VSL+SG+ A AL G V ID + ++ L+ PD FN Sbjct: 6 IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +L+ + I YTHSG+ ASA +M+K ++ V ++ G+PV +L+ Sbjct: 66 LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + PYV+KP+ GSS+G+ ++ + + + W+HG +L+E+Y+ G EL Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAI--ARGWSHGPHVLVEEYIPGREL 183 Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GV+ D +L VT+I S FY YE KY++ S H LPA+I + LA AH Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243 Query: 236 QAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +A+GCRG SR+DF +D + ++ LE N QPGMTP S+ PE AAY G + L Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303 Query: 291 WMVEDASCL 299 WM++ A+C Sbjct: 304 WMIDHATCR 312 >gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103] gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103] Length = 305 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 117 -----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T + + P +KP GSS+GI + + + L ++ H D +L+E + Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAAL--EEAFRHDDNVLVEAF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L +I S+FY YE KY S ++ + PA + + E+Q+L Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L++ Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299 Query: 292 MVEDA 296 ++E A Sbjct: 300 ILELA 304 >gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] Length = 303 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58 +A+L GG SSERE+S+ SGKA +AL+ GF+ S D + + PDLAF L Sbjct: 6 IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +LE L I YT S + SA+ MDK +K ++ + G+ V + Sbjct: 66 HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V+KP GSS+G+ +++ + + + +++IE+++ G E+T Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAV--GEILKIDSKVIIERFIKGREIT 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ LD+ EI V K FY Y KY S + ++ PA+I +Y+++Q A + + Sbjct: 184 VGILNGEPLDIIEIKV-KEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIYNIL 242 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G++R DF+ D K ++LE+N PG+T S+ P+ AA G +F L+L ++E A Sbjct: 243 GCKGVARVDFILDK--DKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGA 298 >gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 318 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GQFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] Length = 306 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 IAVLMGGFSSERSVSLSSGAACADVLEVQGYRVSRVDVDAHIASVLEQLQPDIAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS +++RF + Sbjct: 66 PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPSRIMSRFALGQ 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS G+++++++++ P + + W + D+++IE+Y+ G ELTC Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ LDV EI K FY Y+ KY + S H+ PA++ L+IY+ VQR++ AHQAIG Sbjct: 186 VLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 364 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 173/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E EVS+ S K+ L+ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SAL MDK +K++ G+P +++ + S + S P +KP Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + L + + ++ + ++LIEQ ++ E+ C V+G++ + V+ + Sbjct: 186 NSGSSVGISKAKDKDELILAIHE--AFLYDTKILIEQAINAREIECAVLGNSEILVSALG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP +FYSYE KY +S ++PAK+ + E++ LA ++ C G++R DF D Sbjct: 244 EIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ Y+G + +LL +++ A Sbjct: 304 KETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] Length = 314 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 187/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE AG +V++ID+ R V L +PDL FN LHG Sbjct: 7 IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +L+L+ I YTHSG+ S +++DK+ +KQ + G+P+ +V + + Sbjct: 67 SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + P+ + W ++LL E Y+ G ELT Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ +L VTE+ PK+ +Y ++ KY+ + HV PA+IP +I + + LA AH+ + Sbjct: 187 TAVLGNRALGVTELK-PKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D +F LE+N QPGMTP+S+ PE + G + L+ +V++A Sbjct: 246 GCRGASRSDFRWDDERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDEA 305 >gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1] Length = 318 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 140/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++MGG SSER VSLSSG+ C +AL GF+V +D + L L+PD+ FN LHG Sbjct: 13 VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K ++ G+P+ S L R + + Sbjct: 73 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP GSS+G+ ++ + +L + D L++E +V G ELT Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELAD----DLPDTLMVEAFVPGRELTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V GD +L VT+I +Y Y+ KY S HVLPA++P D+Y A AH+ +GC Sbjct: 189 VQGDRALCVTDIVT--EGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +DP + LE N QPGMTP S+ PE A + G F L W+VEDASC Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306 Query: 299 LR 300 R Sbjct: 307 DR 308 >gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica] Length = 306 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L++AG ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+ G+ V P + +N + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L ++ + LLIE++ Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGALEI--AFRYDADLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD +L I P + FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LYGPEYTVAILGDTALPSIRIQ-PAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++++GC G R D + D + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAYKSVGCCGWGRVDIMMD-SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] Length = 312 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 173/306 (56%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+ +AL+ G+ + D+ L L + DLAF LHG Sbjct: 7 IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIANRDLLELKN--FDLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q LELL+IPYT G+++S++ M+K+ SK++ G+P +V + Sbjct: 65 KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P ++KP + GS++G+ + + +S + +++L+E+ ++G ELT Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESIKF--DEEMLVEKCIEGRELT 182 Query: 179 CGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G +L + EI P + Y YE KY+ ++ ++ PAK+ ++ + ++ + A Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGN-YDYEQKYTRDDTQYICPAKLDENLARNIENICIKA 241 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ C+G SR D + D + + LEIN PGMT S+ P A G S+ ++ +++ Sbjct: 242 YDSLECQGWSRVDVMLDK-NNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEILK 300 Query: 295 DASCLR 300 A CL+ Sbjct: 301 TA-CLK 305 >gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440] gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440] Length = 318 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 318 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEEDCV 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + ++ + ++ + Q+L+EQ++ G E T Sbjct: 140 VAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] Length = 314 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 180/307 (58%), Gaps = 17/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S EREVSL SG+A A AL GF+VS +D++ + + +PD+AF LHG + Sbjct: 7 VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVADRPDVAFIALHGKY 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------- 114 GEDG VQ +L++LEIPY S +L SA+ ++K +K++++ +P P +++N Sbjct: 67 GEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKIG 126 Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GSS+G ++KK++++ L ++ + +L++E+++ Sbjct: 127 LAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERFI 184 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG E+T V+G+ L + EI V +++FY YE KY+ S H++PA+I V+ Sbjct: 185 DGTEVTASVLGNEDAEVLPLIEI-VAENEFYDYEAKYTPGMSHHIIPARISERARVRVEE 243 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A + A CRG SR DF+ D F LEIN PGMT +S+FP+ A AG SF +L Sbjct: 244 IALKTYHAFKCRGFSRVDFIVDKNDN-PFVLEINTIPGMTSLSLFPDAARAAGMSFEDLC 302 Query: 290 LWMVEDA 296 +VE A Sbjct: 303 ARLVELA 309 >gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] Length = 318 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + ++ + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P FY Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D R + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9] gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9] Length = 308 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 151/298 (50%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ERE+SL SG+ +AL G D L D F LHG Sbjct: 12 VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 FGEDG +Q LE + IPYT G++ASA+ MDK RSK V + G+PV L+ + Sbjct: 72 AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPVPDFRLLADDSDFA 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSSLG+ ++K + ++ + +L EQ+V G E T Sbjct: 132 AIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKF--DPLVLAEQFVGGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L +I P ++FY Y+ KY ++ + PA + + ++RLA + Sbjct: 190 VALLEGRALPAIKIE-PATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQGFAVL 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DFL D + + LEIN PGMT S+ P A AG ++ L L ++E A Sbjct: 249 GGSGWGRIDFLVDEA-GQPYLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLEAA 305 >gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] Length = 304 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+A +AL++ G+ V ID + + K D+AF VLHG Sbjct: 3 VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GE+G VQ +LE++ IPYT SG+LASAL+MDK SK++ G+PV P ++N+ Sbjct: 63 GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122 Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S S P V+KP + GSS+G+ ++K ++ + + ++ G +++IE++++G E Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + GV+GD +L E+ PK FYSYE KY+ + ++LP +I +Y++++ L AH+ Sbjct: 181 IHIGVLGDKALGGVEVR-PKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ C+G +R D + D + LE+N PGMT S+ P++A+ AGY F+ L+ ++E Sbjct: 240 SLNCKGGTRVDMIVDQQGN-PYVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILE 296 >gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] Length = 306 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A + L +AG ID L F LHG Sbjct: 5 VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDTRDFPLAQLKAQGFSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V S G+P+ P + ++R Sbjct: 65 RGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAEFVG 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + + L + ++ H D +L+E++ Sbjct: 125 EAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAALDE--AFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD + I P FY Y+ KY S ++ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAFLGDQLMPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLSAEQESELAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A G F +L+ Sbjct: 242 ARAYRGLDCSGWGRVDVMQDN-DGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 320 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 169/319 (52%), Gaps = 27/319 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++SL SG A + L +AG ID + L AF LHG Sbjct: 5 VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK + G+PV P + +NR + Sbjct: 65 RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124 Query: 121 Q-----------------------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + P ++KP + GSS G+ ++ + D Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQL--DDALK 182 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +W++ +++L+E++ G ELT ++GD L I V FY Y+ KY S + + P+ Sbjct: 183 KAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQVSD-IFYDYQAKYVSDKTQYFCPS 241 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + K++ L+ A++A+GC G R D + D + +EIN PGMT S+FP Sbjct: 242 GLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLD-DEGHFYLMEINTAPGMTDHSLFPMA 300 Query: 278 AAYAGYSFRELLLWMVEDA 296 A AG+SF EL+ ++ A Sbjct: 301 ARQAGFSFSELVCKILSLA 319 >gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] Length = 322 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 143/304 (47%), Positives = 199/304 (65%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL +G A A+ALE G +VS++D + V VL L PDL FN LHG Sbjct: 14 IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV L +R + Sbjct: 74 RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + W G+Q+++E Y+ G+EL Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193 Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ +L VTEI + FY Y+ KYS S HVLPA IP + LA L H Sbjct: 194 VVGESNGPRALAVTEIR-SSTGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHT 252 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC+G++RSDF +D ++ + LE+N QPGMTP S+ PE A +AG SF L+ W+VEDA Sbjct: 253 ALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDA 312 Query: 297 SCLR 300 R Sbjct: 313 YARR 316 >gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 170/309 (55%), Gaps = 15/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------VGLVLAHLKPD 52 +AV+ GG + E EVS+ S K+ + L+ ++ + +D++ + AH D Sbjct: 5 VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG FGEDG VQ +LEL ++PY +G+L SA+SMDK K+V +P+ + Sbjct: 65 VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124 Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 V R T +D+ + P +KP GSS+GI +Q + + ++ ++++E Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAKQYDR--KIIVE 182 Query: 170 QYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + ++G EL C V+G+ + + +P +FY YE KY + +PA +P + E+ Sbjct: 183 RGIEGRELECSVLGNEAPMASLPCEILPSREFYDYEDKYLLDMARTQVPADLPGERTDEI 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +RLA ++A+ C G++R DF + + +++ EIN PG T +S++P+M ++G F Sbjct: 243 RRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCT 302 Query: 288 LLLWMVEDA 296 LL ++E A Sbjct: 303 LLDQLIEFA 311 >gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 319 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 170/302 (56%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKTAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVP 316 Query: 299 LR 300 +R Sbjct: 317 VR 318 >gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 293 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 137/299 (45%), Positives = 187/299 (62%), Gaps = 9/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ C AL +AGF +ID + LA KPD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L +PYTHSG+LASAL+MDK R+K + G+PV S L R +++ H++ Sbjct: 61 DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P L +++++E + G ELT VMG+ Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKL----GAEMPERVMVEAFAPGRELTTMVMGE 176 Query: 185 -ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +L VT+I +Y Y+ KY S H +PA IP +I + A AH+ IGCRG+ Sbjct: 177 RGALGVTDIIT--DGWYDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGV 234 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R+DF +D + LEIN QPGMTP S+ PE AA+AG F EL W+VEDASC R Sbjct: 235 TRTDFRWDESRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293 >gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330] Length = 307 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 166/299 (55%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG+A AL G D ++ L D+AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTELAKLKKQGFDIAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG VQ LE L +PYT G+LASAL MDK R K + S+ G+P+ P +++ N Sbjct: 67 TYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNSHFA 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P IKP GSS+G++ +K+ + + + +L EQ++ G E T Sbjct: 127 EVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV +L I +P+++FY YE KY ++ ++ P+ + D +Q LA A +AI Sbjct: 187 CGVFNRQALPTIRI-IPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAI 245 Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G + R DFL D + ++ LE N PGMT S+ P+ A G F +L + ++ +A Sbjct: 246 GGGNSLGRIDFLKDSV-GCLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILNNA 303 >gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] Length = 316 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 164/307 (53%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG AL AG D L H + AF LHG Sbjct: 7 VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ ++ G+P + Sbjct: 67 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSS+GI + + + +S + +L E+++DG Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEMQDAVKLAS--EYDADVLCEEFIDG 184 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+GD +L V I P Y +E KY S + + P+ +P E+QRL Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAP-GGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRL 243 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++ +GCRG R+D + RK F LE+N PGMT S+ P A AG S+ +L + Sbjct: 244 TLAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCV 303 Query: 291 WMVEDAS 297 ++E A+ Sbjct: 304 HVLECAA 310 >gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM] Length = 305 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK ALE+ G +V ID L L+ D+ + LHG Sbjct: 3 VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ++LE+ +PYT SG+LASAL+MDK R+K + ++ G+ + +L+ Sbjct: 63 KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122 Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P V+KP + GSS G+ + + + + + ++ +L+EQY+ G E Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNGLTIAMDEAMLREGIDK--AFACDTAVLVEQYIKGRE 180 Query: 177 LTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LT V+G+ A+L V EI +PK++FY YE KYS S HV PA++P + +EVQ A Sbjct: 181 LTVPVLGNHGAEAALPVIEI-IPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAI 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+GC G SRSDFL + LE N PGMTP+S+FP+ A G S+ ELL Sbjct: 240 KAHRALGCSGYSRSDFLISE-DGLAYILETNTLPGMTPLSLFPDSARAVGISYGELLERF 298 Query: 293 VEDA 296 +E A Sbjct: 299 IELA 302 >gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxidans DMS010] gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxydans DMS010] Length = 312 Score = 337 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 164/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SGKA + L+ G IDV + LA + D AF VLHG Sbjct: 14 VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ + +P+T SG+ AS LSM+K SKQ G+P V++ T Sbjct: 74 RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQATDTE 133 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P +IKP+ GSS+G+ + +++ + + + D ++ EQ++ G E T Sbjct: 134 QLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAIALAL--KYDDDVIAEQWIQGEEYT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L + P+ +FY +E KY S ++ ++ P + L+ +++Q+LA A + + Sbjct: 192 VAILDGQALPGIRLKTPR-EFYDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEGL 250 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF+ D + + + LE N PGMT S+ P A AG F L+ ++E + Sbjct: 251 GMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDFDALVWRILETS 307 >gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4] gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4] Length = 316 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G IDV V L+ + + AF LHG Sbjct: 13 VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ G+P ++N T + Sbjct: 73 RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGTDLA 132 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG+ + +++ ++ ++ ++ EQ++ G E T Sbjct: 133 LVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAYREAMAF--DGTVIAEQWLPGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L + + P+ FY +E KY + + ++ P + + + +Q LA A QA+ Sbjct: 191 AAILTGRALPLIGLETPR-IFYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF D +R LE+N PGMT S+ P A AG F +L+L ++E + Sbjct: 250 GASGWGRVDFRCDAQARPC-LLEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILESS 306 >gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594] gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594] Length = 323 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG ++EREVSL SG+ A ALE G V++ID+DR V +A PD+ FN LHG Sbjct: 9 VVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 69 VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQ 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q ++ PYV+KP+ GSS+G+ ++ + + P+ W +LL E ++ G ELT Sbjct: 129 QDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G +L VTE+ PKS FY ++ KY+ + HV PA IP +I ++ A AH+ + Sbjct: 189 TAVVGGQALAVTELK-PKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRIL 247 Query: 239 GCRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SR+D+ +D +F LE N QPGMTP+S+ PE AAYAG S+ +L+ +VE A Sbjct: 248 GCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307 >gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 319 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] Length = 319 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 168/307 (54%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER++SL SG AL+DAG D + L F LHG Sbjct: 13 VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K+V + G+P + + Sbjct: 73 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYVRLAPDEQTP 132 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P ++KP + GSS+G+ + + + S+ H +L E+++DG Sbjct: 133 ERVRGVPDDLGLPLIVKPPREGSSIGVTKVLGYSQMQDAVALSA--RHDPDVLCEEFIDG 190 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+G+ +L V I P++ Y Y+ KY + ++ P+ +P D E+QR+ Sbjct: 191 AEVTCPVLGEGANARALPVIRIVPPEAG-YDYQNKYFTDEVKYLCPSGLPADEEAEIQRI 249 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A++A+GCRG R+D + RK F LE+N PGMT S+ P A AG + +L L Sbjct: 250 VLAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLGYEQLCL 309 Query: 291 WMVEDAS 297 +++ A+ Sbjct: 310 HILQGAA 316 >gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM 6725] gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725] Length = 364 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 175/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ ++V I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + + ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] Length = 310 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+ER VSL+SG A +AL G D L + D F LHG Sbjct: 13 VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSGEFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG +Q LELL IPYT SG++ASA+ MDK R+K + + G+P +++ Sbjct: 73 RYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDFA 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P +KP + GSS+G+ + + ++ +++ H +L E+++DG E T Sbjct: 133 ATEARLGLPIFVKPAREGSSIGMSKVTEAGTLQAAYEKAA--EHDALVLAEKFIDGAEFT 190 Query: 179 CGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 G++GD++L + + + FY +E KY ++ + PA +P +++LA A + Sbjct: 191 VGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFRL 250 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G RG R D + D L + LE+N PGMT S+ P A AG F L + ++E Sbjct: 251 LGGRGWGRVDLMTDRLGN-PYLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILEQ 307 >gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] Length = 302 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL G D LA D F LHG Sbjct: 8 VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELA--GFDRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q LEL+ IPYT SG++AS++ MDK R+K + + GV LV + Sbjct: 66 RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGVVTPDFELVTADSNFD 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K + ++ ++ EQ+V G E T Sbjct: 126 AIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALAA--KSDPLVIAEQFVGGGEYT 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++G A+L V I VP ++FY YE KY ++ ++ P + + ++++ A A + + Sbjct: 184 VGILGGAALPVIRI-VPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQAFRIV 242 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D R ++LE+N PGMT S+ P A G F EL+L ++E A Sbjct: 243 GGRGWGRVDFLMDEAGRH-YFLEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILELA 299 >gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 319 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] Length = 313 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV L K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCK 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ ++ +++ ++ + Q+L+EQ++ G E T Sbjct: 135 AAATELGFPLIVKPAHEGSSIGMAKVESVEALVAAWQDAA--RYDSQVLVEQWIAGPEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + FY Y+ KY + ++ + +P + + E++ L A +A+ Sbjct: 193 IAVLRGEVLPPIGLGTPHT-FYDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 252 GTQGWARADVMQDAS-GQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310 Query: 299 LR 300 R Sbjct: 311 AR 312 >gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] Length = 364 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S E VSLS+ A +A++ F V I + + Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64 Query: 47 --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + + + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + + ++ + ++++E+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGITKCKRRADLQAAF--AEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ EIN PG TP S+FP + ++G S+ EL+ +V+ A Sbjct: 303 L-GEDGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQLA 348 >gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 319 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 359 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E EVSL S K+ + L+ +++ I + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65 Query: 50 ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R ++ + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192 GSS+GI + ++ +P L ++ + +LLIE+ +D E+ C V+G+ + + Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPQASIAGE 243 Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G + LL ++ A Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348 >gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] Length = 346 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+ AL G D L F LHG Sbjct: 29 VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALHG 88 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG VQ LELL IPYT SG++AS++++DK+ +K++ S G+P V+ T Sbjct: 89 RFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSAAATS 148 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP + GS++G+ + + + ++ H +L EQ+V G E+T Sbjct: 149 EAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAA--RHDAMVLCEQFVKGDEVT 206 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ++G +L V I P + Y Y+ KY + + +++PA +P +Q+LA A Sbjct: 207 IPLLGSGAGAHALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPANLPAGEEAHIQQLALKA 265 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +Q +GCRG +R D + D +R F LEIN PGMTP S+ P A AG S+ L L ++ Sbjct: 266 YQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLR 325 Query: 295 DAS 297 A+ Sbjct: 326 HAT 328 >gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL] gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL] Length = 364 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 177/345 (51%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+SL S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL +IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + + ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G S+ +L+ ++ A Sbjct: 304 KDTNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLIDKLISLA 348 >gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] Length = 333 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL+ G D + L F LHG Sbjct: 11 VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELGELKRDGYARCFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG+LAS+++MDK+ +K++ + G+P V Sbjct: 71 RFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPTPRWKNVTSVDETR 130 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + P ++KP + GS++G+ + ++ H +L EQ++ G E+T Sbjct: 131 AALAELGAPMIVKPAREGSTIGLTKVNDATQCAQAYQLAA--QHDPLVLCEQFIAGDEVT 188 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L I P Y YE KY S + +++P+ +P +Q L + Sbjct: 189 VPVIGSGADARALPAIRIVAP-GGNYDYEHKYFSDGTQYIIPSGLPEGEEARIQDLVLRS 247 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GCRG +R+D + D +R + LEIN PGMT S+ P A AG S+ +L L ++ Sbjct: 248 FHALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDLCLRLLA 307 Query: 295 DAS 297 A+ Sbjct: 308 TAT 310 >gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 313 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE G KV++ID+ R + LA PD+ FN LHG Sbjct: 8 VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ AS +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ + + P+ W D LL E Y+ G ELT Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD++L VTE+ PKS FY ++ KY+ + H+ PA IP +I + + +A AH+ + Sbjct: 188 TAVLGDSALLVTELR-PKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D +F LE+N QPGMTP+S+ PE A G + L+ +V +A Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306 Query: 297 SCLR 300 + Sbjct: 307 LERK 310 >gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] Length = 322 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+EREVSL SG +AL G D LA + D F LHG Sbjct: 11 VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLAELATEQFDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG +Q LELL IPYT SG++ASA+ +DK+ +K++ S +P ++++ T Sbjct: 71 RFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPTPRFLVLDAQTPAD 130 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P ++K GS++GI + D + + + +L E+++ G Sbjct: 131 VLDEVPEELGLPLMLKAPHEGSTIGIAKVIVDADMHTGFALCA--QYDSVVLAEEFISGR 188 Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T V+G +L + EI P+ + Y YE KY S ++ ++ PA + ++ +Q +A Sbjct: 189 EITIPVLGSGHGARALPIVEIRAPEGN-YDYEHKYFSDDTVYLCPAPLADEVTATLQDIA 247 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + F LE+N PGMT S+ P A AG S+ +L + Sbjct: 248 VRAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISYEDLCVE 307 Query: 292 MVEDA 296 ++ A Sbjct: 308 ILSTA 312 >gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] Length = 364 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 175/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + + ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKVLIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] Length = 307 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A SAL G ID L D AF VLHG Sbjct: 8 VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L+IPYT S +L+SA++MDK ++KQ+ S G+P ++ + D Sbjct: 68 RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S ++KP+ GSS+G+ + + + LL ++ ++L+E +++G Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKALLD--AFKFDKKVLLETWIEG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ A+L ++A +DFY Y+ KY S + + P + + + +LA A Sbjct: 186 EEYTVSMLSGAALPAIKMAT-DNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +IGC+G R DF+ D +++ F LEIN PGMT S+ P+ A AGYSF +L+L ++ Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVLEIL 302 >gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 314 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 117/302 (38%), Positives = 177/302 (58%), Gaps = 9/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+SSER+VSL +G A A AL G+ V +IDV + V L K D+A+ LHG Sbjct: 14 VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P P T Sbjct: 74 RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + S P V+KP + GSS+G+ V K ++ + ++ + LL+EQ++ G E Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGRE 191 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235 + V+ D +L V E+ V + +FY + KY+S + + ++ PA +P D Y+ V + AH Sbjct: 192 VQGAVLDDEALGVIEVVVAR-EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAH 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC+G SRSD + VF LE N PGMT S+ P++AA G F L +++ Sbjct: 251 RALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQG 309 Query: 296 AS 297 AS Sbjct: 310 AS 311 >gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] Length = 321 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SGKA AL+ G D L K D F LHG Sbjct: 13 VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++ + G+P + N Sbjct: 73 IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPTPRYTELKANTDFN 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GS+LG+ + + ++ H +L E++++G+ELT Sbjct: 133 EVVAKLGLPLIVKPACEGSTLGLTRVTDASQMKEAYELAA--THDQSVLAEEFIEGMELT 190 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+ +L + I P ++ Y Y+ KY S + ++ P + ++ K +Q+ + Sbjct: 191 CAVLERDGKPEALPMIRIIAPGAN-YDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQS 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GCRG R D + K F LE+N PGMT S+ P A AG + +L + ++ Sbjct: 250 YRALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLLA 309 Query: 295 DAS 297 A+ Sbjct: 310 AAT 312 >gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] Length = 311 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 165/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P++IKP+ GSS+G+ ++K + P L +++ H ++ E++++G E T Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKAT--EHDAVVMAEKWINGREFT 185 Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ +L V + PK FY YE KY+ + + +P + K +Q LA A QA Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC+G R D + D + LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302 >gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] Length = 306 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 120/303 (39%), Positives = 187/303 (61%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG+A +ALE G++V IDV+R V + +LAF LHG Sbjct: 5 IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++ G+PV + DS Sbjct: 65 PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124 Query: 121 Q----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+K GSS+G+ ++++++ + + + ++ G ++L+E+++ G E Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDLEARITDAVAYG-GTRVLVEKFIAGPE 183 Query: 177 LTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 LT V+G+ L + EI V + Y YE KY+ S H++P ++P ++ + V LA Sbjct: 184 LTAAVLGNREPRVLPLIEI-VSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALR 242 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++A+GCRG +R D + + F LEIN PG+T VS+FP+ A AG SF +L+ +V Sbjct: 243 AYRALGCRGFARVDLIV--SGNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLV 300 Query: 294 EDA 296 A Sbjct: 301 RLA 303 >gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis 108] gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis 108] Length = 364 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 173/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDL--ALAIHEAFLYDTKILIEQAINAREIECAVLGNDDVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] Length = 376 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 158/357 (44%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + + +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDAPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] Length = 310 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG ++EREVSL SG A AL+ G IDV S LA K D FN++HG Sbjct: 15 VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K G+ +L++ +D Sbjct: 75 RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGLVTPKWCLLIDESDLD 134 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + L ++ + + E +V G E T Sbjct: 135 GCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRCD--VYAEAWVTGKEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L V + P + FY YE KY + + + P + D ++ LA A + + Sbjct: 193 VAVLDGEALPVIRLETPNT-FYDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKVV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G +G R D D L + +E+N PGMT S+ P A AG F EL+ ++E + Sbjct: 252 GVKGWGRVDVFIDDL-GQYQLIEVNTVPGMTDHSLVPMAARQAGMDFEELVWRILETS 308 >gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 319 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + + ++ LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 162/295 (54%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLASEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +SS + Q+L+EQ++ G E T Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAAWKDASS--YDSQVLVEQWITGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + FY Y+ KY + ++ + +P + KE+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R+D + D + ++LE+N PGMT S+ P A AG F++L++ ++ Sbjct: 257 GIAGWGRADVMQDA-DGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVVSIL 310 >gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] Length = 343 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 173/337 (51%), Gaps = 39/337 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVGLVLAH 48 + +L GG S E EVSLSS + +AL F+V+ + D R++ +A Sbjct: 9 ILLLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAE 68 Query: 49 LK-------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 D+ F +LHG GEDG VQ +L L IP+ SG+L SA SMDK Sbjct: 69 TGGDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAM 128 Query: 96 SKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 +KQV+++ G+P P L+ R + + + P +KP GSS+GI ++ + Sbjct: 129 TKQVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGE 188 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEIAVP--KSDFYSYE 203 + D ++ H ++++E G EL G++G+ + + + +DFY YE Sbjct: 189 DEL--DGALREAFAHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYE 246 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ +T +PA +P + ++V+ A A +A+ C G++R DF ++ + +V+ E+N Sbjct: 247 TKYTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVN 306 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG TP S++P + A AG S+ +L+ +VE A+ R Sbjct: 307 TMPGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343 >gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] Length = 290 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 6/294 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSL SG+A +AL ID ++ L D AF LHG GE Sbjct: 1 MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122 DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+ G+P S+LV + Sbjct: 61 DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDSDFNSIIE 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++KP GSS+GI +K + + +S ++ ++ E Y+ G E T ++ Sbjct: 121 KLGLPLMVKPSLEGSSVGITKVKNVDELASAVETASQFHCD--IIAEHYISGTEYTAAIL 178 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D +L + + P+ +FY + KY+ ++++ P +P +E+Q +A A ++G +G Sbjct: 179 HDTALPLIRLETPR-EFYDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAKG 237 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D S K + +EIN+ PGMT S+ P A AG SF EL+L ++ A Sbjct: 238 WGRVDFLCDETS-KPWLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290 >gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] Length = 371 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 105/361 (29%), Positives = 171/361 (47%), Gaps = 63/361 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 + VL GG S E EVSL S +A L+ + V+ I + + + LA P Sbjct: 7 VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG GEDG VQ Sbjct: 67 AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------- 121 +LEL+EIPY G++ASA+ MDK +K S G+PV P +L+ R + + Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 ++ P +KP GSS+GI + ++ + ++++++ ++++EQ + E+ + Sbjct: 187 QRLTYPMFVKPANLGSSVGISKVTGRAALARGIAEAAAYDR--RIVVEQGIPAREIEVSI 244 Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + VP ++Y YE KY S S ++PA I L++ V+RLA A +AI Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL + + ++ EIN PG TPVS++ M +G + +LL ++E A Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIELALER 364 Query: 300 R 300 R Sbjct: 365 R 365 >gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 311 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 175/305 (57%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A+L GG S+EREVSL SG+ +AL+ + V + D + + A K D+A +LH Sbjct: 8 VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPY SG+L SA++M+K+ SKQ+ G+PV P ++ +R Sbjct: 68 GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127 Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GSS+G+ +++ + + + W + + LIE+YV GI Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAV--ETGWQYDRRCLIEKYVHGI 185 Query: 176 ELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ +L + EI ++ +F+ Y+ KY+ S + PA++ I + Q A Sbjct: 186 EITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQEYA 245 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQA+ C+G SR+D + +F LE N PGMT S+FP+ AA AG SF LL Sbjct: 246 RKAHQALCCKGYSRTDMIV--SGNDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDR 303 Query: 292 MVEDA 296 ++E A Sbjct: 304 LIELA 308 >gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] Length = 359 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E EVSL S K+ + L+ +++ I + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65 Query: 50 ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R ++ + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192 GSS+GI + ++ +P L ++ + +LLIE+ +D E+ C V+G+ + + Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPQASIAGE 243 Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G + LL ++ A Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348 >gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 288 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 169/293 (57%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +G+A + AL+D G +V ++D+ + L +KPD F LHG Sbjct: 3 IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L++L IPYT +G+L SA++MDK +K+++SS G+P P V R Sbjct: 63 PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRGEEPV 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P V+KP GSS+G+ V+ + + + + + D++L+E +++G ++T Sbjct: 123 WR--DFPAVVKPADQGSSVGLSVVHSEAELGKAVKE--LFELTDKVLVESFIEGRDMTVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI K Y YE KY+ + + + ++ + +Q A ++ +G Sbjct: 179 ILKGKALPVIEIKPIK-GIYDYESKYTRGKTEYTFLEE--GELSERLQDTALRVNELLGL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++R DF D + LE+N PGMT +S+FP AG SF+E+L ++ Sbjct: 236 KDMARVDFRVDGEGN-PYVLEVNTVPGMTELSLFPMACEKAGMSFKEMLSIIL 287 >gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] Length = 311 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P++IKP+ GSS+G+ ++K + L +++ H ++ E++++G E T Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKAT--EHDAVVMAEKWINGREFT 185 Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ +L V + PK FY YE KY+ + + +P + K +Q LA A QA Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC+G R D + D + LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302 >gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313] Length = 376 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514] gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 359 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 171/345 (49%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65 Query: 50 ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL++PY Sbjct: 66 KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V ++ + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192 GSS+GI + ++ +P L ++ + +LLIE+ +D E+ C V+G+ + + + Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPEASIAGE 243 Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP ++FY Y KY S ++PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFLMD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348 >gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] Length = 376 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 308 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 164/303 (54%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG +AL G D LA AF LHG Sbjct: 9 VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLA--GFARAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q LEL+ IPYT SG++ASAL MDK R+K + + G+PV P ++++ T Sbjct: 67 RYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDLA 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K+ + ++ + H ++ E+ + G E T Sbjct: 127 AVEAALGLPLFVKPACEGSSIGITKVKRPGELAA--ARAEAARHDSLVIAERAILGGEYT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+A+L + +I P ++FY YE KY ++ + P + E+++ A A + + Sbjct: 185 VAILGNAALPIIKIE-PSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRVL 243 Query: 239 GCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G RG R DFL D ++LE+N PGMT S+ P A AG S+ +L++ ++ Sbjct: 244 GGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVVRILA 303 Query: 295 DAS 297 A+ Sbjct: 304 LAT 306 >gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70] gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70] Length = 364 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 158/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S E VSLS+ A +A++ F V I + + Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64 Query: 47 --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + + + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + + ++ + ++++E+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGITKCKQRDDLKAAF--AEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + EIN PG TP S+FP + ++G S+ EL+ +++ A Sbjct: 303 LTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQLA 348 >gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 291 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 163/295 (55%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S E E+S S K+ AL+ G +V ++++D ++ L KPD F LHG Sbjct: 3 VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE+ YT SA+ MDK +K+V+ + +PV F D Sbjct: 63 SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETF--FQGDK 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GS++GI V+K + S + ++ + +++IE+Y++G E+T Sbjct: 121 IEPVEIPCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI V ++ FY ++ KY + + +PA + L + +++++++ + + C Sbjct: 179 VLNGFALPPVEI-VTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF D + + LE+N PGMT S+ P+ A AG F +L+ ++E Sbjct: 238 KGAIRIDFRIDKWNN-PYVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILES 291 >gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] Length = 301 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 133/301 (44%), Positives = 192/301 (63%), Gaps = 6/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L PD FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V +S G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ + +W HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ D +L VTEI FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 Query: 299 L 299 Sbjct: 300 R 300 >gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] Length = 319 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 315 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 166/298 (55%), Gaps = 11/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG +AL + G +D R L D F VLHG Sbjct: 20 VAVLFGGASAERDVSLKSGGQVLAALRNVGVDCFHVDP-RDGLQPLLDGDFDRVFIVLHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L LL PYT S +LASAL+MDK+R+KQ+ + G+P +++ + D Sbjct: 79 RGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPTPKYAVLDAGS-DW 137 Query: 121 QHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + ++ P ++KP+ GSS+G+ + + + L+++ + ++ EQ++ G Sbjct: 138 EAIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAAKF--DSVVIAEQWITGA 195 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++G+ +L ++ FY YE KY ++ ++LP +P D E++ LA A+ Sbjct: 196 EYTVSILGEDALPAIKLET-DRQFYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRAY 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +AIGC G R D + D + + LE+N PGMT S+ P A +G SF +L+L ++ Sbjct: 255 RAIGCSGWGRVDIMCDAA-GQPWLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVLSIL 311 >gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 319 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 319 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGPATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] Length = 325 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 142/299 (47%), Positives = 206/299 (68%), Gaps = 1/299 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSL SG+ CA ALE G KVS+ID R + VL+ LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV L NR+ + Sbjct: 70 AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYV+K GSS+G+ +++ + P + SW +G+Q+++E ++ G+EL G Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM +++VTEI + + +FY YE KY+ S H++PA++P ++ + + AH A+GC Sbjct: 190 VMDGKAMEVTEI-LTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG++RSD +D ++ + LE+N QPGMTP S+ PE AA G F L+LW+ EDA Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDAYAR 307 >gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 306 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SGKA AL +G D L A LHG Sbjct: 10 VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119 +GEDG VQ LELL IPYT SG+LASAL+MDK R+K + S G+ IL++ D Sbjct: 70 RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ +++ + ++ H +L EQ+++G ELT Sbjct: 130 AVAKELGLPLIVKPSREGSTIGLSKVREAGEVAAAWHLAA--RHDAMVLAEQFIEGTELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + I V + D Y Y+ KY S + + P+ + + +++ A AH+ + Sbjct: 188 ASILGDVALPLVRIQV-EGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQAHRLL 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G R D + D ++LE N PGMT S+ P A AG SF EL+L ++ A Sbjct: 247 GCEGWGRVDLILDKS-GTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVLKILGLA 303 >gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] Length = 315 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL+ AG IDV + L + D AF VLHG Sbjct: 17 VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV S G+P + + Sbjct: 77 RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPRHAVPTSESDCR 136 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + L S+ +H Q+L+EQ++ G E T Sbjct: 137 AAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAAWL--SARSHDPQVLVEQWIQGPEFT 194 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + P S FY Y+ KY + ++ + +P + +E++ L A +A+ Sbjct: 195 VALLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEAV 253 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 254 GVQGWARVDVMQDAEGR-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADSVE 312 Query: 299 LR 300 R Sbjct: 313 AR 314 >gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1] gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 355 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 39/332 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + +L GG S E +VSL + ++ +A+ F V I + Sbjct: 13 LGILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNEL 72 Query: 42 ------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 L L D+ F +LHG GEDG VQ +LELL +PY +G+LASA+ MDK+ Sbjct: 73 AFQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVV 132 Query: 96 SKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIVIKK 146 KQ+ + G+ + + + + I P +KP GSS+GI K Sbjct: 133 MKQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYEL 204 + + + ++ + ++++E+ + G E+ GV+G+ V VPK +FY YE Sbjct: 193 REQLQTAFQE--AFRYDRKVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY N+ +PA + Y+ ++++A A + + G+ R+DF +V+ E+N Sbjct: 251 KYVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADFFLTA-DGEVYINEVNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP S+FP + + G + EL+ +++ A Sbjct: 310 MPGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341 >gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 303 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 177/301 (58%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG SSEREVSL SG SA++ G V Q+D +L K D F LHG Sbjct: 3 VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLDPCSIDLSMLNLYKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE G +QA+L++L+IPY SG+LASA+S++K+++K+V S+ G+ P +LV + T S Sbjct: 63 GLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQS 122 Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L I+ P VIKPL G S+G+ ++ + LL +++ + D++L+EQ++ G Sbjct: 123 DILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQALL--AAFEYDDEVLVEQFIVGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ D +L V +I F+ + K+ + ++T+ P+ + K +Q++ A+ Sbjct: 181 EYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GCRG R D L + V+ +E+N PGMT S++P AA AG ++ L+ +++ Sbjct: 239 KALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLDK 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] Length = 306 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG A + L + G ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LELLE+PYT SG++ASAL MDK RSK + S +PV P + +NR Sbjct: 65 RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + P ++KP GSS+G+ + +S L++ ++ + D++L+E++ Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGMSKVS--ESSTLEVALEEAFRYDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L I FY Y+ KY S N+ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-SAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ CRG R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LRAYRALDCRGWGRIDLMQD-SDGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLVTR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILALA 305 >gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille] gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille] Length = 320 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 158/306 (51%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK +AL G D LA K D F LHG Sbjct: 8 VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLAELAAEKFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LE L IPYT G++ASA++MDK+ +K+V S GVP + + Sbjct: 68 RFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATTA 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + L P ++K GS++GI ++ + + + + D +L+EQ+V G Sbjct: 128 EQLQAIAAEFGMPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCA--KYDDVVLVEQFVKG 185 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V+G +L + EI P+ + Y YE KY S ++ ++ PA K VQ L Sbjct: 186 RELTVPVLGSGRNARALPIVEIIAPQGN-YDYEHKYFSDDTQYLCPAPFDAAFTKRVQAL 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A A+GC G +R DFL + F LEIN PGMT S+ P A AG ++ +L + Sbjct: 245 AVSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLCV 304 Query: 291 WMVEDA 296 ++ A Sbjct: 305 EILRMA 310 >gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 318 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA AL+ G IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P +++ + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 140 SAVAELGLPLIVKPAHEGSSIGMAKVTSASELIDAWKAAS--TYDSQVLVEQWIQGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + FY Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D + ++LE+N PGMT S+ P A AG F++L+L ++ + Sbjct: 257 GIAGWARADVMQDAQ-GQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASLE 315 Query: 299 LR 300 R Sbjct: 316 AR 317 >gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans NG80-2] gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2] gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] Length = 364 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 158/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S E +VSLS+ +A +A++ F V I + + Sbjct: 5 VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64 Query: 47 --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L +PY Sbjct: 65 QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + + ++ + +++IE+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGISKCKQRDDLKTAF--AEAFKYDRKIIIEESIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++ +A A +A+ G++R DF Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELIERLIALA 348 >gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 308 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+A AL G D + L D AFN+LHG Sbjct: 12 VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETPLGELKTQGFDCAFNILHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG VQ LE L I YT G+LAS++ MDK RSK + G+PV ++ + Sbjct: 72 VFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPVPDYAVLRDDSDFD 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E ++ G E T Sbjct: 132 AVERQLGLPMFVKPANEGSSVGVVKVKEAGRLKEVYHELKQFR--GEIIAEAFIGGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CG++ +L I +P ++FY E KY ++ ++ P+ + + + ++ L A AI Sbjct: 190 CGILNGRALPSVRI-IPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRAFHAI 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D R ++ LE N PGMT S+ P+ AA G+ F +L + +++ A Sbjct: 249 GGRGWGRIDFLKDESGR-LYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILKTA 305 >gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct] Length = 320 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG VQ +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2] Length = 319 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25] gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25] Length = 318 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDAWKAAS--TYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D ++LE+N PGMT S+ P A AG F++L+L ++ + Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASIE 315 Query: 299 LR 300 R Sbjct: 316 PR 317 >gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] Length = 319 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAKGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1] gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1] Length = 319 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424] gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus taiwanensis LMG 19424] Length = 327 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + G+ +++ T Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLHADTDFD 136 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + ++++ ++ ++ E +VDG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFDKAAALDND--VIAETFVDGAELT 194 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L V I P+++ Y Y+ KY + ++ ++ P+ + ++ ++VQ LA A Sbjct: 195 CPVVGEGDTAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + F LE+N PGMT S+ P A G S+ + +L ++ Sbjct: 254 YRVLGCRGWARADVMLRA-DGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVLA 312 Query: 295 DAS 297 A+ Sbjct: 313 AAT 315 >gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] Length = 291 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 166/294 (56%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL +G+A AL++ G+ IDVD +V + +PD F LHG Sbjct: 5 IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPY +G+ ASA++ DK +K +V S G+ L + Sbjct: 65 KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKTPDYYL----CEND 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P V+KP + GS++GI ++K S + + ++LIE++++G ELT G Sbjct: 121 KDIRFLPAVVKPAREGSTIGISIVKSKDEFSKAF--SEAKKYDSRVLIERFIEGKELTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + L I K FY YE KY+ + ++ + +D ++ ++ IGC Sbjct: 179 IINNEVLPTIYIKPIK-GFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R D+++D ++ F LE+N PGMT S+ P+ A AGY F +L+ +++ Sbjct: 238 SSLCRIDYIYD--GKEFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289 >gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] Length = 288 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 165/293 (56%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A AL G + +DV + L +KPD F LHG Sbjct: 3 VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L+LL IPY SG+LASAL+MDK +K++++ G+PV I V R Sbjct: 63 PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +L P V+KP GSS+G+ V++K++ + L L + W + LIE+++ G ++T G Sbjct: 123 WNL--FPAVVKPADQGSSIGLHVVEKEEDLTLALEEV--WKVSQKALIEEFIQGKDVTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D L EI PK Y YE KY+ + +V + +++Q +A H + Sbjct: 179 ILKDKPLPPIEIR-PKKGVYDYESKYTKGMTEYVFVE--DPSVVEKLQEIALKVHTLLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +SR DF + LE+N PGMT +S+FP AG F +++ ++ Sbjct: 236 KDMSRIDFRLS-DDGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMVHILL 287 >gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] Length = 302 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG SSEREVSL SG+A AL + G V ID D ++ L + DL F LHG Sbjct: 8 VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L++PYT SG+LASAL+MDK+R KQ+ G+P L+ + S Sbjct: 68 PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + ++KP GSS+G+ + + +S + ++ E + G E T Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAAWADAS--QYNTAVIAEPLLPGPEYT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L I ++FY Y+ KY S + ++ P+++ +E+Q L A ++ Sbjct: 186 VAILDGQVLPSIRIE-SNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D + D + LE+N PGMT S+ P A AG SF +L+ ++ A Sbjct: 245 GCRGWGRVDVMVDHQ-GQFQLLEVNTVPGMTSHSLVPMAAKAAGLSFDQLVEKILAGA 301 >gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] Length = 289 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125 L +PYT SG++ASAL+MDK+R+K V + +P+ P + +NR ++ + Sbjct: 62 LGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + L++ ++ H +LIE+++ G E T G++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVE--AFRHDTDVLIEKWLSGPEFTVGILGDD 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I VP FY YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQVP-GVFYDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVARILTLA 288 >gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] Length = 315 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 124/304 (40%), Positives = 174/304 (57%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK+ +ALE G +V +D + +L+ + A LHG Sbjct: 3 VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+LE+ IPYT SG+LASAL+MDK RSK G+ + +LV R Sbjct: 63 KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q + P V+KP + GSS G+ + +Q + + ++ D +LIEQ++ G E Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180 Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +T V+G + +L V EI +PK++FY YE KY+ S H+ PA+ + +Q A Sbjct: 181 VTVPVLGAKGQEKALPVIEI-IPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAV 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LAHQ +GC G SR+DFL P LE N PGMT S+FP+ A G + EL+ Sbjct: 240 LAHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETF 298 Query: 293 VEDA 296 +E A Sbjct: 299 IELA 302 >gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] Length = 316 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 172/302 (56%), Gaps = 12/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S+EREVSL++GKA AL + G+ ID+D L FN +H Sbjct: 6 IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPPRFLEQLRENGVTFVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G FGEDG +Q L+LL IPYT SG+LASAL+MDK SK++ + G+P + + + Sbjct: 66 GKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIPTPRAEIYTKADAK 125 Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+K GSS+G+++++++ + +++ ++ + D +++E ++ Sbjct: 126 RNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVE--AFRYSDCIVVENFIK 183 Query: 174 GIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELT ++G L+V I VP S Y Y KY+ + +++PA+I + + V+++A Sbjct: 184 GKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVRQVA 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG++R D + D + LE+N PGMT S+ P+ AA AG SF +L Sbjct: 244 VAAFNLLGCRGVARVDIMLD-DDNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADLCER 302 Query: 292 MV 293 ++ Sbjct: 303 IL 304 >gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 319 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] Length = 306 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 164/296 (55%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG A +AL+ + D L D AF LHG Sbjct: 9 VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFDPVGQPLEDLLKQGFDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LEL+++PYT SGILASAL+MDK R+K + + G+ ++++ + Sbjct: 69 RYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADSNFQ 128 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP + GS++G+ + Q + ++ H ++ EQ++ GIELT Sbjct: 129 EVTDRLGLPLIIKPAREGSTIGLNKVDYAQDMQSAYQTAA--QHDSLVIAEQFIQGIELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + I V + Y Y+ KY S ++ + P+ + + +Q A AH+ + Sbjct: 187 AAILDDVPLPLVRIDVTE-GLYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAHRIL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E Sbjct: 246 GCTGWSRVDLILDK-NGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILE 300 >gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] Length = 301 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A AL +ID R++ LA K D AF LHG Sbjct: 7 VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+ ASA+ MDK RSK + +P LV + Sbjct: 67 VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P ++KP GSS+GI + + + + + G +L EQ+V+G+E T Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAK--QTGSSVLAEQFVEGLEFT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ +L ++ +DFY Y KY ++ +++P + + +Q LA A+Q++ Sbjct: 185 VGILDGKALPAIQLKAA-NDFYDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 C G R D + D + +E+N PGMT S+ P A G SF L+L ++E Sbjct: 244 DCHGWGRVDVMQDAK-GDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILET 299 >gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] Length = 331 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 11/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG AL D + L F LHG Sbjct: 16 VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL I YT SG++AS++++DK SK++ S G+P LV Sbjct: 76 RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q L + P ++KP + GS++G+ + + Q L ++ + ++L EQ++ G ELT Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAA--RYDPEVLCEQFIAGDELT 193 Query: 179 CGVMGDA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 C V+ +L + I P + Y Y+ KY S + + P+ +P + + RLA Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGN-YDYQHKYFSDATRYHCPSGLPEAQERAIGRLAE 252 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A A+GCRG +R+D + ++ F LEIN PGMT S+ P A AG S+ +L L + Sbjct: 253 QAFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRL 312 Query: 293 VEDAS 297 + A+ Sbjct: 313 LAMAT 317 >gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] Length = 305 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 176/301 (58%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS+EREVSLSSGK +AL+ G +V ID L +L+ DL + LHG Sbjct: 3 IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L++L I Y SG+ SAL+MDK +SK G + ++ + + D Sbjct: 63 RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122 Query: 121 QH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P V+KP + GS++GI + ++ + + ++ + +L+E+++ G E+ Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEELLNGI--EEAFKLDETVLLEEFIKGREV 180 Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T VMG+ +L V EI VPK+ +Y YE KY++ S H++PA++ + VQ+ A L Sbjct: 181 TVAVMGNKGREKALPVVEI-VPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVL 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AHQA+GC SR DF+ LE+N PGMTP S++P+ A G S+ E++ V Sbjct: 240 AHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFV 299 Query: 294 E 294 + Sbjct: 300 Q 300 >gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 319 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 322 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDAWKAAS--TYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G +R+D + D ++LE+N PGMT S+ P A AG F++L+L ++ Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL 310 >gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] Length = 317 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A A LEDAGF V ID L K D F LHG Sbjct: 17 IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q LE L+IPYT S +L S+LSMDK+RSKQ+ +CG+P P +VN+ Sbjct: 77 RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + ++KP GSS+G+ K + L++ ++ Q+L+E ++DG Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNALIE--AFGFDTQVLLEAWIDG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD +L + P+ +FY YE KY S ++ + P + E++ L+ A Sbjct: 195 PEYTVTILGDKALPAIHMETPR-EFYDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A G +G R D + + + LE+N PGMT S+ P+ A G +F EL+ +++ Sbjct: 254 FNATGAQGWGRVD-IMRNKTGEWQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQILQ 312 >gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] Length = 317 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 16 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERPLAALKEEGFVRAFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 76 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 135 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ +I +K ++P L+++ + +++E+ ++ Sbjct: 136 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAV--KYDRIVVVEKSIEG 193 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y KY + ++ +++P + D ++ LA Sbjct: 194 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVLARR 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 253 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 307 >gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas maltophilia K279a] Length = 320 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 168/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D + LA D FN+LHG Sbjct: 20 VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ + Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I VPK +Y Y KY + ++ ++ P + +E++R+A A +A Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGGDEEEIRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ A AG SF EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLEQ 313 >gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 319 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] Length = 314 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 6/293 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG SSEREVSL SG A AL+ G +DV + PD F LHG Sbjct: 21 VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS 120 GEDG +QA+L+ L IPYT S ASAL+MDK+++KQV S G+ + N Sbjct: 81 GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + +KP GSS+G+ V+ Q + +++ ++ ++L+E+ + G E T Sbjct: 141 LDSLGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAA--HYDAKVLVERRIVGREFTVA 198 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L + FY Y+ KY S + ++ P + + E+Q +A A A+GC Sbjct: 199 VLNGVALPAIGLKTDHV-FYDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAFAAVGC 257 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G R DF+ D + LE+N PGMT S+ P A +G F EL+L ++ Sbjct: 258 KGWGRVDFMQDEAGN-FYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVLEIL 309 >gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16] gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16] Length = 327 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 169/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG +Q +LE L +PYT SG+LASA++MDK +K++ + G+ +++ T Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGLATPRFAMLHADTDFD 136 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + ++++ ++ ++ E ++DG ELT Sbjct: 137 AVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFEKAAALDND--VIAETFIDGAELT 194 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L V I P+++ Y Y+ KY + ++ ++ P+ + ++ +EV+ LA + Sbjct: 195 CPIVGEGDSAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQS 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + K F LE+N PGMT S+ P A G S+ + ++ +V Sbjct: 254 YRVLGCRGWARADLMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVVA 312 Query: 295 DAS 297 A+ Sbjct: 313 AAT 315 >gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 319 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 364 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 174/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + + ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ EIN PG T +S++P++ ++ + +L+ ++ A Sbjct: 304 KDTNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348 >gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] Length = 367 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S E +VSLS+ A +A++ F V I + + Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 50 -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + ++ ++ + +++IE+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFKYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A QA+ G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] Length = 300 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 164/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57 +A+L GG S ERE+S+ SGKA AL G+ D+ D+ + +L KPDLAF V Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEIL-EYKPDLAFIV 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QAILE L IPYT S + S ++MDK+ +K + + G+P I Sbjct: 63 LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIFFTEEK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+K GSS+G+ ++ Q + + ++ D++L+E+++ G EL Sbjct: 123 EALNYRPDFPVVVKAPTEGSSIGVYIVNNQQEYENAVKEV--FDLDDKVLVEKFIKGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D D+ E+ V + FY + KY + + ++ PA++ D+YK +Q L ++ Sbjct: 181 TVSILDDEVFDIVEVVVSE-GFYDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKVYKL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G +R D + LE+N PGMT S+ P+ A G +F +L+ +++++ Sbjct: 240 LNCKGPARVDIIL-ENDNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIKNS 297 >gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72] gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72] Length = 304 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG A +AL+ AG D +L D F LHG Sbjct: 8 VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 GEDG VQ LEL+ IPYT SG++ASAL+MDK R+K V SCG+P +++ D Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP+ GSS+G + + + ++ + ++ E+++ G ELT Sbjct: 128 AIARDLGLPIFVKPVHEGSSMGATKVTEAGQLRAAWELAA--RYDSLVIAEEFISGQELT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D +L + I P + Y Y+ KY + ++ + P +P + +Q L + + + Sbjct: 186 APFLDDRALPLVRIVAPDGN-YDYQHKYFTDDTRYDCPCGLPQAEEEALQALILKSARVL 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + P R + LE+N PGMT S+ P A AG SF L L ++ A Sbjct: 245 GCRGWGRADLILTPEGR-PYLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAILAGA 301 >gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As] Length = 378 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + V Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ + ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARF--DSRVLVEQFIEGDEVT 192 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L + I P Y YE KY S ++ ++ P+++P D +Q L + Sbjct: 193 CAVIGAGDQARALPLIRIVAP-GGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLRS 251 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L ++ Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILS 311 Query: 295 DAS 297 A+ Sbjct: 312 MAA 314 >gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] Length = 308 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 181/304 (59%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG+ AL + G +V+ ID L L D+ + LHG Sbjct: 3 VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ++LE+ IPYT SG+LASAL+MDK R+K + ++ G+ V +L+ Sbjct: 63 KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V+KP + GSS G+ + + + + ++ +L+EQY+ G E Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNGLTIAMDEAMLREGI--EKAFACDSAVLVEQYIKGKE 180 Query: 177 LTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LT V+G+ +L V EI +PK++FY YE KY+ S HV PA+I D+ EVQ+ A Sbjct: 181 LTVPVIGNFGKEEALPVIEI-IPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAV 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LAH+A+GC G SRSDFL K + LE N PGMTP+S+FP+ A G S+ ELL Sbjct: 240 LAHRALGCSGYSRSDFLVSE-EGKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERF 298 Query: 293 VEDA 296 +E A Sbjct: 299 IELA 302 >gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2] gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + +L GG S E EVSL+S + A++ +++ I + ++ Sbjct: 6 IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65 Query: 42 -VGLVLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + ++LAH K L F VLHG FGEDG +Q + E+ IPY S Sbjct: 66 GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133 G+L SAL MDK R K V + G+P P I V R + + +H + P +KP Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTE 191 GSS+GI + + + L ++ + +L++EQ + G E+ V+G+ + Sbjct: 186 NLGSSVGISKARNREELIQALQLAA--EYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 304 E-GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345 >gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] Length = 313 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 12 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+P PS+ + + Sbjct: 72 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +++ +I + +++ ++L+E+Y+ G Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 189 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+GD +L + EI VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 190 ELTVAVIGDAEVEALPIIEI-VPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAV 248 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+ C G+SRSDF+ + LE N PGMT S+ P+ A AG SF EL + Sbjct: 249 RAHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRL 307 Query: 293 VEDA 296 + A Sbjct: 308 IGYA 311 >gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 337 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 157/299 (52%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D L K D F LHG Sbjct: 30 VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV S G+ + Sbjct: 90 RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGLATPEYEELTATSDWN 149 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSSLG+ +K + +P ++ +++ E + G ELT Sbjct: 150 AVVQHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAA--GLDKKVIAETCIIGDELT 207 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G +L V +I P+++ Y + KY S + ++ P + ++ VQ LA A Sbjct: 208 CPLVGQGKTAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLAPEVNAAVQTLALAA 266 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A+GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW++ Sbjct: 267 YKALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWLL 325 >gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110] gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110] Length = 323 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 161/307 (52%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL SG AL G D + L F LHG Sbjct: 12 VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPRYVRLAFDQQSR 131 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ P ++KP + GSS+G+ ++ + + S+ ++ +L E++++G Sbjct: 132 EQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSARYDAD--VLCEEFIEG 189 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+G +L V IA P+ Y Y+ KY + + + P+ +P E+QR+ Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPE-GAYDYQNKYFTDDVKYHCPSGLPEAEEHEIQRI 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +GCRG R+D + RK F LE+N PGMT S+ P A +G ++ +L L Sbjct: 249 TLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLCL 308 Query: 291 WMVEDAS 297 ++ AS Sbjct: 309 RVLASAS 315 >gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1] Length = 324 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG A +AL+ AG IDV + L K D AF +LHG Sbjct: 20 VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE+ IPYT SGILASAL+MDK+R+KQV + G+P ++ + Sbjct: 80 RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPTPRHAVLRSEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVSSASELIDAWKAAS--TYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + FY Y+ KY + ++ + +P + KE+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R+D + D K ++LE+N PGMT S+ P A AG F++L+L ++ Sbjct: 257 GIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVLAIL 310 >gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] Length = 306 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L+ G D L D AF VLHG Sbjct: 10 VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERSLDELK--GFDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG VQ LEL++IPYT S +L A++MDK+R+K + + G+P +V++ Sbjct: 68 RGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESFSP 127 Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P ++KP GSS+G+ + S+ + + + D +L+E +V G Sbjct: 128 NSAEDIMARLGSPVMVKPACEGSSIGMAKAEDAASLQKAIDTAL--QYDDTVLVEAWVHG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++G+ +L + P FY YE KY S + + PA + D + ++ LA A Sbjct: 186 PEFTVSILGEEALPAIRMETPNV-FYDYEAKYQSQTTQYHCPAGLSDDDEQALRALALRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A+G G R D + D LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 245 FKAVGASGWGRVDVMRDA-DGSWRLLEVNTVPGMTETSLVPKAANAVGVDFDTLVARIL 302 >gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + Sbjct: 81 RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 312 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 179/310 (57%), Gaps = 19/310 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVSL SG+A AL AG+ V +IDV + L + +AF LH Sbjct: 5 IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++ G+P ++ + ++ Sbjct: 65 GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124 Query: 120 SQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + L + P V+K GS++GI + + + S+ + +L+E Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKM--AEAIESALKYDQDVLVE 182 Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 Q+V G E+T V+G+ +L + EI + Y Y+ KY+ S H++P ++P DI ++ Sbjct: 183 QFVAGTEVTASVLGNNSPEALPLIEI-TSVTGVYDYQSKYTPGMSDHIIPPRLPQDIQEK 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ LA + ++GCRG+ R DF+ + + LE+N PGMT S+FP+ A YAG SF Sbjct: 242 IKELAIKSFLSLGCRGLGRIDFIIR--DNQPYALEVNTLPGMTATSLFPDAANYAGISFP 299 Query: 287 ELLLWMVEDA 296 EL +++ A Sbjct: 300 ELTDRLIKLA 309 >gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae] Length = 300 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVSL SG A + L DAG +D+ + L + F LHG G Sbjct: 2 LLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----- 118 EDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ + G+P+ P I +++ + Sbjct: 62 EDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMSD 121 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S + P ++KP GSS+G+ + + + ++ + +LIE++++G Sbjct: 122 EMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELR--IALEFAFRYDKDVLIEKWLNG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++G+ L I P FY Y+ KY S + + P+ + + +++ +LA A Sbjct: 180 PEYTVAIVGEQVLPSIRIQ-PVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALAA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R D + D + LEIN PGMT S+ P A AG +F +L+ ++E Sbjct: 239 YKAVGCAGWGRVDVMRDN-DGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKILE 297 Query: 295 DA 296 A Sbjct: 298 LA 299 >gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 289 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125 L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR ++ + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L ++ H +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQADQLHGAL--EEAFRHDSDVLIEKWLSGPEYTVAILGDN 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P FY YE KY S + + P+ + ++ +++ L+ A+QA+GC G R Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 288 >gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1] gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Magnetospirillum magneticum AMB-1] Length = 305 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 195/306 (63%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+ ++ + +PD+ FN Sbjct: 5 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + +S G+PV ++ R Sbjct: 65 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P+V+KPL GSS+G+ +++ +Q PL ++ D++L+E ++ G EL Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL---PDWPFD-ADEVLVESFIPGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD +L V EI FY YE KY+ S H++PA IP Y E RLA AH+A Sbjct: 181 TAAVMGDRALGVLEI-TSDHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHKA 239 Query: 238 IGCRGISRSDFLFDPL--SRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SR+D +D + LE+N QPGMT S+ PEMAAY G +F EL+ WMV Sbjct: 240 LGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWMV 299 Query: 294 EDASCL 299 E+A C Sbjct: 300 EEARCD 305 >gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 312 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 + V+MGG S EREVSL++G A AL++ G+ ID+D S+ + + FN +H Sbjct: 7 IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFNAVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG +QA+LE+L +PYT SG+L+SA++M+K +K++ + GV + + Sbjct: 67 GLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQ 126 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P V+KP + GSS+G+ ++KK++ + L ++++G +L E + G Sbjct: 127 TAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKAL--EEAFSYGKLVLAEAFFTG 184 Query: 175 IELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+ GVM D+S + + + P DFY Y KY+ +T+ PA + K +Q Sbjct: 185 KEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQEE 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++A+GC G++R D + D LE+N PGMT S+ P+ A G SF +L Sbjct: 245 AVKAYKALGCSGVARVDEMVDAEGN-FICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCE 303 Query: 291 WMVEDA 296 ++E A Sbjct: 304 KILETA 309 >gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61] gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61] gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] Length = 367 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S E +VSLS+ A +A++ F V I + + Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 50 -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFTQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + ++ ++ + +++IE+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFQYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A QA+ G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR] gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR] Length = 365 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +AV+ GG S E EVSL+S + AL +++ I Sbjct: 6 VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65 Query: 37 -----DVDRSVGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D + L +P D+ VLHG FGEDG +Q +LEL IPY Sbjct: 66 AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 G+ AS++ MDK K + + +P + R + + + P +KP Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190 GSS+GI + + + + ++++E+ ++G E+ V+G+ + + Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLAC--LYDRKVVVEENINGREIEVAVLGNDEPEASIA 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +DFY YE KY S S +PA + EV++LA A +AI G+SR DF Sbjct: 244 GEIVPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFI 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T +S++P++ A G + +LL ++E A Sbjct: 304 KKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIELA 349 >gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] Length = 309 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL+SGKA +AL+ G D + L AFN+LHG Sbjct: 10 IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETNLAELKTQGFQAAFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG VQ LE L IPYT G+LASAL MDK R K + + G+P+ +++ + Sbjct: 70 TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPIPAFAVLHDDSDFT 129 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P IKP GSS+G+ + + + Q N ++L EQ++ G E T Sbjct: 130 AVEQQLGLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMSGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ +L I +P++DFY +E KY ++ ++ P+ + + + +Q LA A AI Sbjct: 190 CGVLNQQALPSIRI-IPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQAFAAI 248 Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL D K++ LE+N PGMT S+ P+ A G F +L + +++ A Sbjct: 249 GGGNTCGRVDFLKDAA-GKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAILQTA 306 >gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8] gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8] Length = 301 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 162/298 (54%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL+ G D L D A LHG Sbjct: 7 VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFDPATRPLHDLES--FDTAMISLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 FGEDG +Q LELL IPYT SG++ASA+ MDK R+K + S+ GV LV + Sbjct: 65 RFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDFE 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K+ + ++ ++ EQ+V G E T Sbjct: 125 AIEQRLGLPLFVKPANEGSSIGISKVKQTGGLKAAYELAA--KSDPLVIAEQFVGGGEYT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD +L + I VPK++FY +E KY ++ + P + + ++Q+ A LA I Sbjct: 183 VGILGDQALPIVRI-VPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALLAFNTI 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G R DFL D + ++LE+N PGMT S+ P A AG SF EL++ ++ A Sbjct: 242 GCQGWGRVDFLMDEAGKH-YFLEVNTSPGMTDHSLVPMAAKAAGISFDELVVSVLRLA 298 >gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] Length = 319 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG ++ AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPTPDYAVLGSEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] Length = 307 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 155/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG+A AL G D + L D FNVLHG Sbjct: 13 VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETDISKLRD--YDRVFNVLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ IPYT G+LASA++MDK R++ V + +P P ++++ T Sbjct: 71 TFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDFT 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ IK+ + + +L E+ + G E Sbjct: 131 AIEQQLGLPLFVKPAAEGSSVGVFKIKEVGEL--AKTYPQLKQYHGAILAEKAITGGEYA 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C ++GD L I +P ++FY YE KY+ ++ + P+ + + +Q++A A AI Sbjct: 189 CSILGDEVLPSIRI-IPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFAAI 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G +G SR DF ++ LE+N PGMT S+ P A G F L + ++E Sbjct: 248 GGKGWSRVDF-LRDDEGTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILEQ 303 >gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 289 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 156/291 (53%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D S L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125 L++PYT SG++ASAL+MDK+R+K V + +P+ P + +NR ++ + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L++ ++ H +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQASELQAALVE--AFRHDTDVLIEKWLSGPEFTVAILGDE 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P FY YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARESGLSFSQLVARILMLA 288 >gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] Length = 306 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 160/301 (53%), Positives = 225/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA LE G++VS++DVD + VL L+PD+AFN LHG Sbjct: 6 VAVLMGGGSSERSVSLSSGTACADILEARGYRVSRVDVDSHIASVLERLQPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS +++RF + Sbjct: 66 PFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPSCIMSRFAVGR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKPL GSS G++++K+++S P + + W + D++++E+Y+ G E TC Sbjct: 126 EHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEKYIPGREFTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ +LDV EI K FY+Y+ KY S S H+ PA++ +IY+ VQR++ AHQAIG Sbjct: 186 VLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQRMSLAAHQAIG 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG+SRSDF F+ + ++ WLEIN QPGMTP S+FP++A +G ++ +++ WMVEDASC+ Sbjct: 246 CRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] Length = 317 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 9/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG+ AL G +D ++ LA K D FN+LHG Sbjct: 20 VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV S +P + ++R + Sbjct: 80 GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139 Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++KP GSS+G+ + + + + ++ + ++L+EQ V G Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDGLDEAIALAA--RYPGEMLMEQMVVGD 197 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT GV+GD +L I VP+ ++Y Y KY + ++ ++ P + + V+ LA A Sbjct: 198 ELTVGVLGDIALPSIRI-VPRGEWYDYNAKYIAEDTQYLCP-GLEGEDELRVRELALAAF 255 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A GC G R D + + + LE+N PGMT S+ P+ AA G F EL ++E Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILEQ 315 >gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 328 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A L +AG +D L F LHG Sbjct: 27 IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L L++PYT S +SALSMDK+++K S G+P+ P + + + Sbjct: 87 RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSSLG+ + +P L ++ + +++LIE++ Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ +L I P FY Y+ KY S + + P+ + +++ LA Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + + LE+N PGMT S+ P A G +F +L++ Sbjct: 264 KQAYQALGCSGWGRVDVMQDSDAN-FYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVVQ 322 Query: 292 MVEDA 296 ++ A Sbjct: 323 ILALA 327 >gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 319 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426] gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426] Length = 367 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 158/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S E +VSLS+ A +A++ F V I + + Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 50 -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKRGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189 P GSS+GI K+ + ++ ++ + +++IE+ + G E+ GV+G+ V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFQYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A Q + G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQVLDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] Length = 320 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 118/298 (39%), Positives = 169/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ VLA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ T+ Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HVLAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I VPK +Y Y KY + ++ ++ P + E++R+A A +A Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGADEDEIRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ AA AG F EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLEQ 313 >gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] Length = 327 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + + ++ T Sbjct: 77 RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHDLSTPRFAMLYADTDFD 136 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + ++++ ++ ++ E ++DG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAFEKAAALDND--VIAETFIDGAELT 194 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L V I P S+ Y Y+ KY + ++ ++ P+ + ++ +EVQ+LA A Sbjct: 195 CPLVGEGATAEALPVIRIVAPDSN-YDYQNKYFTDDTQYLCPSGLSAEVEREVQQLAVQA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + K F LE+N PGMT S+ P A AG S+ + ++ +V Sbjct: 254 YRVLGCRGWARADVMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDFVMQVVA 312 Query: 295 DAS 297 A+ Sbjct: 313 AAT 315 >gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] Length = 325 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 + VL GG S+ER+VS +GKAC ALED G +V ID D + L L + D + Sbjct: 3 IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116 LHG GEDG+VQ +L+ L +PY SG LASAL+MDK+ SKQ+ + G+P + + Sbjct: 63 LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWDDQN 122 Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P VIKP GS++GI +++ ++S L + S ++ +E+YV Sbjct: 123 PLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARS--VSSRIFLERYVP 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAAGLK 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+QA+GC G++R D DP + LE+N PGMTP S+ P+ AA G++F EL+ M+ Sbjct: 241 AYQALGCEGLARVDLRVDPEEN-PWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERML 299 Query: 294 EDA 296 +DA Sbjct: 300 QDA 302 >gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 319 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 319 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 283 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 8/288 (2%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SLSSG+ CA+AL G++V ++D + L+ + PD+ FN LHG FGEDG VQ +LE Sbjct: 2 SLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLEW 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L IPYTHSG+L+SAL+MDK RSK+V S G+P+ S L ++ ++ +H++ PPYV+KP Sbjct: 62 LRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPYN 121 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + P L + D L++E+YV G ELT VMGD +L VTEI Sbjct: 122 EGSSVGVYIVAEGANTPPKLAV----DMPDTLMVEKYVPGRELTVTVMGDRALAVTEIVT 177 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y Y+ KY S H +PAK+P I A AH A+GCRG+SRSDF +D Sbjct: 178 --DGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDEDK 235 Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMTP S+ PE AA G +F L+ WMVEDASC R Sbjct: 236 GLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283 >gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] Length = 316 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG A +L G + IDVD+ V L+ + AF LHG Sbjct: 13 VVVLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++ +P ++ R T + Sbjct: 73 RGGEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDTNPA 132 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG++ ++ +++ ++ + + E+++ G E T Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVIF--DTAVFAERWLPGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + + P+ FY +E KY + + + P + +++Q LA A QA+ Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D D + + LEIN PGMT S+ P A AG F E++L ++ + Sbjct: 250 GASGWGRVDLRCDEKA-HPYLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVLQILASSLE 308 Query: 299 LR 300 R Sbjct: 309 RR 310 >gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Magnetospirillum magnetotacticum MS-1] Length = 306 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 136/306 (44%), Positives = 194/306 (63%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+ ++ + +PD+ FN Sbjct: 6 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + + G+PV +V R Sbjct: 66 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P+V+KPL GSS+G+ +++++Q PL ++ D++L+E +V G EL Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPLA---DWPFD-ADEVLVESFVPGREL 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD +L V EI + FY YE KY+ S H++PA I Y E RLA AH+A Sbjct: 182 TVAVMGDKALGVLEI-TSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHKA 240 Query: 238 IGCRGISRSDFLFDPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SR+D +D + + LE+N QPGMT S+ PE+AA+ G +F L+ WMV Sbjct: 241 LGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWMV 300 Query: 294 EDASCL 299 E+A C Sbjct: 301 EEARCD 306 >gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34] gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34] Length = 327 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 166/303 (54%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASAL+MDK +K++ + G+ ++ T Sbjct: 77 RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLYANTDFD 136 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + +++ + ++ E ++DG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDAD--VIAETFIDGAELT 194 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G+ +L V +I P+S+ Y Y+ KY + ++ ++ P+ +P + +EV+ LA A Sbjct: 195 CPIVGEGPTAEALPVIKIVAPESN-YDYQNKYFTDDTQYLCPSTLPDALEREVRALAVEA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG +R+D + K + LE+N PGMT S+ P A G S+ + ++ ++ Sbjct: 254 FRVLGCRGWARADVMLT-RDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVMQVLA 312 Query: 295 DAS 297 A+ Sbjct: 313 AAT 315 >gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] Length = 318 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEAETQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 364 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 174/345 (50%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V + + + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + + ++ + ++LIEQ ++ E+ C V+G+ + V+E Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++ + +L+ ++ A Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348 >gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10] gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10] Length = 376 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVS S ++ ++ + V I + +S + Sbjct: 6 VAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNGDWE 65 Query: 46 -LAHLKP--------------------------------DLAFNVLHGNFGEDGLVQAIL 72 +A KP D+ F VLHG GEDG +Q + Sbjct: 66 AIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLF 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHL 123 EL IPY G+L SA+ MDK +K + G+P ++ NR + Sbjct: 126 ELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGR 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP GSS+G+ +S+ L ++ + ++L+E++++G E+ C V+G Sbjct: 186 LTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAA--KNDRRILVEEFINGREIECAVLG 243 Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + + VP +DFY YE KY +S+ + + + ++++ A A + + Sbjct: 244 NDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR DF + +++ EIN PG T +S++P++ A +G + EL+ ++E A Sbjct: 304 CAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 >gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] Length = 324 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 5/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG ACA ALE G KVS+ID V VLA KPD+ FN LHG Sbjct: 16 IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 76 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +IK+ + P + + + SW G+++++E Y+ G+EL Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195 Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ +L VT+I + FY YE KYS S HVLPA IP + R+A LAH Sbjct: 196 VLGESNGPRALAVTDIR-ASTGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHT 254 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG++RSDF +D ++ + LE+N QPGMTP S+ PE A + G F +L+LW+VEDA Sbjct: 255 ALGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314 Query: 297 SCL 299 Sbjct: 315 YAR 317 >gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 315 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 182/304 (59%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L+GGIS EREVSL+SG+ AL +AGF+V+ +D D+ L D+AF LH Sbjct: 12 VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118 G +GEDG +Q +LE++ +PY SG+ +SAL+MDK++SK + G+ PSI + T+ Sbjct: 72 GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131 Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + + + V+K GS+LG+ +++ +I + + +++L+E+Y+ G Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAI--EKARELDNEILVERYIKGK 189 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G+ +L + EI VP +DFY YE KY S H+ PA + + +++Q +A Sbjct: 190 ELTVAVIGNDNPRALPIIEI-VPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAV 248 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+ C G+SRSDF+ D + LE N PGMT S+ P+ A AG SF EL + Sbjct: 249 QAHKALECAGVSRSDFILD-DEGDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTML 307 Query: 293 VEDA 296 +E A Sbjct: 308 IEFA 311 >gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] Length = 323 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 162/307 (52%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVS+ SG AL G D + L F VLHG Sbjct: 12 VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPKYVRLAFDQQSR 131 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 M ++ P ++KP + GSS+G+ ++ + + S+ ++ +L E++++G Sbjct: 132 EQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSAKYDAD--VLCEEFIEG 189 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+G +L V IA P+ Y Y+ KY + + P+ +P D E+QR+ Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPE-GAYDYQNKYFTDVVQYKCPSGLPADEEHEIQRI 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +GCRG R+D + RK F LE+N PGMT S+ P A AG + EL L Sbjct: 249 TLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELCL 308 Query: 291 WMVEDAS 297 ++ AS Sbjct: 309 RVLASAS 315 >gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] Length = 308 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SGKA AL+ G D L D+AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFDPAEMELSELKTQNFDMAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LE L IPYT G+LASAL MDK R K + S+ G+PV P +++ + Sbjct: 67 TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDSDFA 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P IKP GSS+G++ IK+ + Q +L EQ++ G E T Sbjct: 127 AVEQKLGLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV +L I +P+++FY YE KY ++ ++ P+ + + + +Q LA A AI Sbjct: 187 CGVFNGKALPSIHI-IPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEAFAAI 245 Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G + R DF + ++ LE N PGMT S+ P+ A G SF +L + ++++A Sbjct: 246 GGGNTLGRIDF-LKDSAGCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVLQNAQ 304 Query: 298 CLR 300 R Sbjct: 305 DER 307 >gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D LA K D F LHG Sbjct: 30 VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+ S G+ + + + Sbjct: 90 RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSSLG+ +K + +P ++ +++ E + G ELT Sbjct: 150 AVVKHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAA--GLDKKVIAETCIVGDELT 207 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C ++G +L V +I P+++ Y + KY S + ++ P + +I VQ LA A Sbjct: 208 CPLVGQGNSAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLTAEINAAVQDLALAA 266 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +Q +GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW++ Sbjct: 267 YQTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325 >gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii] gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 332 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 161/307 (52%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +L +G+ IDV + L ++ F LHG Sbjct: 17 IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q LE L IPYT SG+ ASA+ M K+ +K +++ G+PV +V R Sbjct: 77 PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136 Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S + P V+KP GS++G+ +++K L ++ + ++ ++E ++ G Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEAL--RTAHRYDEEAMVEAFIPG 194 Query: 175 IELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E+T ++G L EI P FY + KY + ++ PA + + +++++ Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAPD-GFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQ 253 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +QA+GC G +R DF P K F LEIN PGMT S+ P A AG S+ L Sbjct: 254 FAIRTYQALGCSGAARVDFRVTPK-GKPFVLEINTVPGMTETSLLPMAAGKAGLSYDALT 312 Query: 290 LWMVEDA 296 +++ A Sbjct: 313 ERILQSA 319 >gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] Length = 342 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + V Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ + ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARF--DSRVLVEQFIEGDEVT 192 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G +L + I P Y YE KY S ++ ++ P+++P D +Q L + Sbjct: 193 CAVIGAGDQARALPLIRIVAP-GGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLHS 251 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L ++ Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILS 311 Query: 295 DAS 297 A+ Sbjct: 312 MAA 314 >gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 376 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE EVS S ++ ++ ++V I + + + Sbjct: 6 VAIIFGGQSSEHEVSRVSAQSVIENIDKEKYEVEIIGITKKGQWLKYNGPVEKIGSGEWE 65 Query: 47 ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG GEDG +Q + Sbjct: 66 AVAHNKLLEGKSSENETASEITNVNSARQVIAGNTKKPIDVVFPVLHGCNGEDGTIQGLF 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 EL IPY G+L +A+ MDK SK + G+P ++ NR +++ + Sbjct: 126 ELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVFNRKQVNNRLEEAVAQVEST 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP GSS+G+ +S+ L+ ++ + ++L+E+++DG E+ C V+G Sbjct: 186 LTYPCFVKPANAGSSVGVNKASDRESLEKALIIAA--KNDRRILVEEFIDGREIECAVLG 243 Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTHV-LPAK-IPLDIYKEVQRLAFLAHQAIG 239 + + + VP ++FY YE KY +S+ V +PA+ + + ++++ A A + + Sbjct: 244 NDEPVASTVGEVVPCNEFYDYEAKYQVGDSSKVVIPAENLSTETVEKIREYAVRAFKCLD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR DF + ++ EIN PG T +S++P++ A +G + +L+ ++E A Sbjct: 304 CAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMYPKLWAASGIPYSQLIDKLIELA 360 >gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51] gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + +L GG S E EVSL+S + A++ +++ I + ++ Sbjct: 6 IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65 Query: 42 -VGLVLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + ++LAH K L F VLHG FGEDG +Q + E+ IPY S Sbjct: 66 GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133 G+L SAL MDK R K V + G+P P I V R + + +H + P +KP Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTE 191 GSS+GI + + + L ++ + +L++EQ + G E+ V+G+ + Sbjct: 186 NLGSSVGISKARNKEELIQALQLAA--EYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 304 E-GSQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345 >gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801] gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801] Length = 351 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 49/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVSL+S KA A+AL+ + + I + ++ VL Sbjct: 6 VGLLFGGRSGEHEVSLNSAKAIATALQSGENPQKYDIIPIYIQKNGVWQAGDTAQQVLND 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L S Sbjct: 66 AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K + G+P I V+R + + + + P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ +++IE V E+ C V+G+ + + I Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + Sbjct: 244 TYNSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVED 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S++VF EIN PG T S++P++ G F EL+ +++ A + Sbjct: 304 SQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLALERK 350 >gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 325 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 162/306 (52%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG AL G D L F LHG Sbjct: 11 VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLGELKTGGFARCFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG++AS++++DK+ +K+++ S +P +L+ R Sbjct: 71 RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRGGYSP 130 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSSLG+ + + ++ + + +L EQ++ G Sbjct: 131 AQVDAIVDTLGLPLIVKPAREGSSLGLSKVTERAAMAAAVALAE--KMDADILCEQFISG 188 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+TC V+G +L V I P+ + Y Y+ KY + + +++P +P +Q+L Sbjct: 189 DEVTCPVLGTGEQARALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPCGLPAGEEAAIQQL 247 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + CRG +R+D + D +RK + LEIN PGMT S+ P A AG S+ L + Sbjct: 248 VLQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYEALCV 307 Query: 291 WMVEDA 296 +++ A Sbjct: 308 EVLKTA 313 >gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 299 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 166/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57 +A+L GG S ERE+S+ SGKA AL G+ D+ D+ + +L KPDLAF V Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEIL-EYKPDLAFIV 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QAILE L IPYT S + S ++MDK+ +K + + +P I Sbjct: 63 LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIFFTEEK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+K GSS+G+ ++ Q + + +N D++LIE+++ G EL Sbjct: 123 EALNYRPDFPAVVKAPTEGSSIGVYIVNNQQEYENAVKEV--FNLDDKVLIEKFIKGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ D D+ E+ V + FY + KY + + ++ PA++ D+YK VQ L ++ Sbjct: 181 TVSILDDEVFDIVEVVVSE-GFYDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKVYKL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G +R D + + + LE+N PGMT S+ P+ A+ G +F +L+ +++++ Sbjct: 240 LNCKGPARVDIIL-ENDKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIKNS 297 >gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] Length = 305 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 119/300 (39%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSLSSGK AL+ G +V ID L L DL F LHG Sbjct: 3 IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+L+LL IPY +G+ SAL+MDK ++K G+ V ++++ FT D+ Sbjct: 63 RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP + GS++G+ V + ++ + + ++ H D +LIE+++ G E+ Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEEELLQGI--EEAFRHDDTILIEEFIAGTEV 180 Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 T V+G+ SL V EI VPK+ Y YE KY+ S H++PA+I + VQ+ A Sbjct: 181 TVAVLGNKGEERSLPVVEI-VPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAAVR 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AHQA+GC SR DF+ L++N PGMTP S++P+ A G S+ E++ V Sbjct: 240 AHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFV 299 >gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 90/355 (25%), Positives = 165/355 (46%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL+S K+ + + ++V I ++++ +L Sbjct: 14 IGLIYGGRSGEHEVSLNSAKSVIANINSDKYEVVPIAINKTGKWLLGVEPTRMIEAEKST 73 Query: 47 ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72 D+ F V+HG GEDG +Q +L Sbjct: 74 QAEAELEQSTAVTFTGDPNLRRLIPVNGSQEQLENQGAIDVIFPVMHGTTGEDGALQGML 133 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 ++ ++PY G+L SAL MDK + K + G+PV ++ R + + Sbjct: 134 DMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYLVYRRNQWERDPESILNAIEEQ 193 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP+ GSS+GI + + ++ + +++IE+ ++ E C V+G Sbjct: 194 LNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAA--EYDRKVIIERNINCREFECAVLG 251 Query: 184 DASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + V+ + VP ++FY Y+ KY S + PA+I ++ +E++R A +A ++ Sbjct: 252 NDEPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEISQELSQEMRRQALIAFTSLDLS 311 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+SR DF + + KV+ E+N PG T VS++P + +G + EL+ +VE A Sbjct: 312 GLSRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEASGIPYPELIDRLVELA 366 >gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 289 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125 L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L++ ++ H +LIE+++ G E T ++G+ Sbjct: 122 LPLIVKPSHEGSSVGMSKVDRASELHAALVE--AFRHDTDVLIEKWLSGPEFTVAILGED 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P FY YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 288 >gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K] Length = 308 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 168/301 (55%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + S Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + + ++S H +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAAS--HAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA++P + V A AH+ Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 308 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G +V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + S Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + + ++S H +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAAS--HAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA++P + V + A AH+ Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] Length = 372 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 54/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +VSL S +A ++ F++ + + R ++ Sbjct: 7 VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F VLHG +GEDG +Q +LEL IPY Sbjct: 67 PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130 G+LASA++MDK +K++ +S G+ I QH + P + Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+G+ ++ + + + +S + ++++E+ +D EL V+G+ Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELAS--RYDRRIVVEEAIDARELEVSVLGNEEPVAS 244 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + VP +FY YE KY +S ++PA I + V+R+A A + I G++R DF Sbjct: 245 IVGEIVPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + ++ E+N PG T +S++P++ +G FR+L+ ++E A Sbjct: 305 FLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352 >gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] Length = 355 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 152/340 (44%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E EVSL + KA AL+ + + I + + Sbjct: 5 ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 D+ F +LHG GEDG VQ +LELL +PY +G+LAS Sbjct: 65 EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138 + MDK+ K + + G+ + R ++ + P +KP GSS Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196 +GI K + + ++ + ++++E+ V E+ GV+G+ V V K Sbjct: 185 VGISKCKNRTELEAAFKE--AFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAK 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY + ++PA IP +YK+ A A +A+ C G+ R+DF R Sbjct: 243 KDFYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADFFVTEDER- 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG TP S+FP + AG + +L+ ++E A Sbjct: 302 VIINEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIELA 341 >gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] Length = 319 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 160/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L A IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P ++ Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + +++ + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLVELIAAWREAA--RYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + FY Y+ KY + ++ + +P + E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D R + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 308 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 166/301 (55%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V+ +DVD + L L+ D+AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYT SG+ ASA+ MDK SK + + G+ V Sbjct: 69 RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDVIEYRAFPPARAAE 128 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 L P V+KP GSS+G+ ++K + L + + +++E+YV G E Sbjct: 129 IDLRDLPFGVPCVVKPAGEGSSVGVQIVK--DAARLADACREAARYKGDVVVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EIA P ++FY Y KY++ + + PA+IP V A AH+ Sbjct: 187 VNVAVLEGKALGAIEIA-PANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G++R DF+ P F LE+N PGMT S+ P++AA G +F EL +++ A Sbjct: 246 GLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3] gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 320 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 167/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ LA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V + Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVTAEDV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HANAAALGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVIGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L I VPK +Y Y KY + ++ ++ P + D E++R+A A +A Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGDAEDEIRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ A AG F EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLEQ 313 >gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)] Length = 330 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 158/296 (53%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A AL+ G + + D L + D FNVLHG Sbjct: 36 VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKN--YDRVFNVLHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+ CG+ P ++ + T Sbjct: 94 RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDTDWQ 153 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P ++KP+ GSS+G+ + +P +S GD ++ E+++ G E T Sbjct: 154 QVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELAS--GCGDVVMAEKWIAGREFT 211 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + S+FY YE KY+ ++ + +P + + +Q L+ A +A Sbjct: 212 IVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFKA 271 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + G R D + D + + LEIN PGMT S+ P A G F +L ++ Sbjct: 272 VDAEGWGRIDAMQDE-NGNFWLLEINTVPGMTSHSLVPMAAKARGMDFEQLCWHIL 326 >gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] Length = 292 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 167/293 (56%), Gaps = 5/293 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG S E E+S S ++ AL+ G +V ++++ + + L LA PD+AF LHG Sbjct: 3 VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE++ IPYT G+ SA+++DK +K+++ S G+ V I V R + Sbjct: 63 SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFRG-QEI 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P ++KP + GSS+G+ ++K + + + + + LIE++++G E+T G Sbjct: 122 PEPAELPCIVKPARVGSSVGLSLVKSQEEFERAV--NEALTVDAKALIEEFIEGREITVG 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L EI P + Y YE KYS + +V+PA++ + + RLA A++ + C Sbjct: 180 VLNGRPLPPVEILTP-GELYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKVLEC 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RG R DF D + V LEIN PG+T S+ P+ A AG F EL+ M+ Sbjct: 239 RGAVRVDFRLDKYNSPV-LLEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290 >gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 318 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 165/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + T Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138 Query: 119 DS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GDA+L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDAALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 309 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 120/305 (39%), Positives = 174/305 (57%), Gaps = 15/305 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S EREVSL SGKA L+DAG++V +D + PD+ F LHG Sbjct: 6 VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG VQ LELL IPYT SG+LASA+ M+K+ +K+++S G+P ++ + + Sbjct: 66 GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFNRDL 125 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 P V+KP GSS+G +++K ++I L + S +++L+E+++ G Sbjct: 126 FNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPALELALSL--DEEILVEKFIAG 183 Query: 175 IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V+G +L V EI VPK+++Y YE KY S H++PA+I + + V+ ++ Sbjct: 184 TELTVTVLGKDNLKTLPVIEI-VPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEIS 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ A+GCRG R D + D + LEIN PGMT S+ P+ A AG F ELL Sbjct: 243 CKAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLDL 301 Query: 292 MVEDA 296 V+ A Sbjct: 302 FVKMA 306 >gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] Length = 348 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 174/341 (51%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG+S E EVS+SS +A A+AL + ++V + + ++ Sbjct: 6 VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F +LHG GEDG VQ +L+L+ +P+ SG+L SA+ Sbjct: 66 GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137 MDK+ K V + G+P + V R + S + ++ PY +KP GS Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195 S+GI ++ + L +++S++ +L++E+ V G E+ C V+G+ + + Sbjct: 186 SVGIAKVRSRSELEAALDKAASYDR--RLIVEEGVVGREVECAVLGNDHPKASVVGEITY 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +SDFY YE KY+ + ++PA +P D+ ++Q +A A A+ G+ R DF + +R Sbjct: 244 ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEATR 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F EIN PG T S++P++ A G SF EL+ +++ A Sbjct: 304 EIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQLA 344 >gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 318 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 D-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 319 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 332 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL+ G + D L + D FNVLHG Sbjct: 38 VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKN--YDRVFNVLHG 95 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+ CG+ P ++ T Sbjct: 96 RGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADTDWQ 155 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + + P ++KP+ GSS+G+ + +P ++ GD ++ E+++ G E T Sbjct: 156 QIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAA--GCGDVVMAEKWITGREFT 213 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + S+FY YE KY+ ++ + +P + + +Q L+ A +A Sbjct: 214 IVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAFKA 273 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G +F +L ++ Sbjct: 274 VDAKGWGRIDAMQDEEGN-FWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHIL 328 >gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 170/354 (48%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EVSL S + A+ + + + + ++ L Sbjct: 6 VMVIFGGQSGEHEVSLMSAASVMGAINKEKYHIIPVGIAKNGDWKLFNGSVEEIESGDWE 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 K D+ F VLHG +GEDG +Q + E Sbjct: 66 QSINELTEKGEDNKKFSLLPLTDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS-------QHLI 124 +++IPY G++ASA++MDK+ +K+V+ + + P ++ RF +D + Sbjct: 126 MIDIPYVGCGVMASAVAMDKVITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATF 185 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP GSS+GI K +++ + + ++ + ++++IE +V+G E+ C V+G+ Sbjct: 186 EYPVFVKPANMGSSVGISKAKNREALKIAIKEAG--KYDNKIVIEAFVEGREIECAVLGN 243 Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + V A +P +FY Y KY S +V+P + ++ +E+Q LA ++ + CRG Sbjct: 244 EAPRVALPAEIIPSHEFYDYHDKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRG 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR DF + + +V E+N PG T +S++P+M G + +L+ +++ A Sbjct: 304 LSRIDFFVENETNRVLVNEVNTMPGFTKISMYPKMWEATGLPYDKLIDELIQLA 357 >gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 318 Score = 328 bits (842), Expect = 5e-88, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 328 bits (842), Expect = 5e-88, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + V+ GG S E EVSL+S + L+ + + I + D Sbjct: 7 IGVIYGGRSCEHEVSLASAVSVVRYLDTEKYDIIPIVIMKDGAWLWNVEPGQLLQASSDP 66 Query: 41 SVGLVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILE 73 + LA DL F VLHG +GEDG +Q + E Sbjct: 67 ELAAALASAPVVSLATDTQSRQFFALQNKQPLPADGRLDLLFPVLHGPYGEDGTIQGLFE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLI 124 + IPY G+L SA+ MDK K + + G+PV S++ F + + + Sbjct: 127 MANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSLVYRHFQWKRDPEGLLNEVEQRL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 S P +KP GSS+G+ + Q + S ++ + +++IEQ ++ E +C ++G+ Sbjct: 187 SYPCFVKPANLGSSVGVSNARNRQEM--ARAISEAFTYDRKVIIEQGLECREFSCAILGN 244 Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V+++ +P +F YE KY + V+P+ +P + +E++ +A A+QA+ G Sbjct: 245 EYPLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLPAETARELREMALRAYQALDLSG 304 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR DF D + + E+N PG T +S++P++ A +G S+ ELL ++E A Sbjct: 305 LSRVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAASGLSYPELLDRLIELA 358 >gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 318 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 11/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 D-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 E 294 E Sbjct: 315 E 315 >gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] Length = 313 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ +I +K ++P L+++ + +++E+ ++ Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAV--KYDRIVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y KY + ++ +++P + ++ LA Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 289 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 101/292 (34%), Positives = 154/292 (52%), Gaps = 13/292 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D AF LHG GEDG +Q +L+ Sbjct: 2 SLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLDF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 L++PYT SG++ASAL+MDK+RSK V + G+PV P I ++R ++ + Sbjct: 62 LQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP + GSS+G+ + + L + ++ H + +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSREGSSVGMSKVNHASELNAALQE--AFRHDNDILIEKWLSGPEFTVAMLGDE 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P FY YE KY S + P+ + +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQ-PTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 D + D + LE+N PGMT S+ P A AG SF +L+ ++ A+ Sbjct: 239 VDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVTRILALAN 289 >gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CMR15] Length = 331 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ++DG ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIDGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP D VQ L A Sbjct: 198 CAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADAAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 257 YRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 TAS 319 >gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000] gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum GMI1000] Length = 331 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ + ++ EQ++DG ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIDGDELT 197 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C V+G+ +L + I P+++ Y Y+ KY + ++ + PA IP + VQ L A Sbjct: 198 CAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 257 YRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316 Query: 295 DAS 297 AS Sbjct: 317 TAS 319 >gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] Length = 356 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 165/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------VGLVLAHLKP 51 +AV+ GG S E EVSL S A S L+ A +++ I + + + ++A P Sbjct: 7 VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F VLHG +GEDG +Q +LEL PY Sbjct: 67 ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKP 132 G+ ASA+ MDK K ++ G+PV P +LV R + + + P +KP Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+G+ ++ + L +++ + +L++EQ + E+ V+G+ + + Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAA--RYDRRLIVEQGIPAREIEISVLGNDEVVASIP 244 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P ++Y Y KY S ++PA + +VQ LA A QAI G++R DFL Sbjct: 245 GEIIPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFLL 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ E+N PG TP+S++P+M A +G S+ +LL +V+ A Sbjct: 305 DRDQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVDLA 350 >gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] Length = 309 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A AL +G D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTEL--VGYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P ++++ + + Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQESDLA 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS+G+ ++K + + + +++ H ++ E+++ G E T Sbjct: 128 EVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + + +++Q L A QA Sbjct: 186 ISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILEQ 302 >gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] Length = 316 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G + IDV + V L+ + AF VLHG Sbjct: 13 VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ +P + T + Sbjct: 73 RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTADFSALTEDTDPA 132 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG++ ++ ++ +++ + + E+++ G E T Sbjct: 133 VIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAIF--DTAVFAERWLSGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + + P+ FY +E KY + + + P + +Q LA A Q + Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTHYFCPCGLSERQEHVLQALALEAFQVL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D D + + LEIN PGMT S+ P A AG F E++L ++E + Sbjct: 250 GASGWGRVDLRCDEKA-HPYLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILESSLE 308 Query: 299 LR 300 R Sbjct: 309 RR 310 >gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 318 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCP-GLEGDAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str. 306] Length = 318 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIADDTQYLCP-GLEGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1] Length = 307 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] Length = 313 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRGDDYE 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ +I +K ++P L+++ ++ +++E+ ++ Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ LA Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307 >gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] Length = 283 Score = 327 bits (840), Expect = 8e-88, Method: Composition-based stats. Identities = 128/288 (44%), Positives = 177/288 (61%), Gaps = 8/288 (2%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SLSSG+ACA+AL D G+ V +ID + +G L + PD N LHG +GEDG VQ +LE Sbjct: 2 SLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLEW 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + +PY+HSG+LASAL+MDK RSK+ + G+PV PS++ + H++ PPYV+KP Sbjct: 62 MGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPNN 121 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + P L + + ++++E + G ELT V+GD L VT+I Sbjct: 122 EGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTTVVGDRPLTVTDIVT 177 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y Y+ KY S HV+PA IP DI+ A AH A+GCRG+SR+DF +D Sbjct: 178 --DGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDETK 235 Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMT S+ PE AA G F +L WMVEDASC R Sbjct: 236 GAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283 >gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] Length = 307 Score = 327 bits (840), Expect = 8e-88, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 175/304 (57%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 6 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+ PS+ + + Sbjct: 66 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +++ +I + +++ ++L+E+Y+ G Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 183 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+GD +L + EI VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 184 ELTVAVIGDAEVEALPIIEI-VPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAV 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+ C G+SRSDF+ + LE N PGMT S+ P+ A AG SF EL + Sbjct: 243 RAHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRL 301 Query: 293 VEDA 296 + A Sbjct: 302 IGYA 305 >gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1] gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1] gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8] gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1] Length = 307 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 164/348 (47%), Gaps = 54/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E EVS S + + ++ ++V + + + L Sbjct: 6 VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG VQ ++ELLE+PY Sbjct: 66 KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130 +L+S+L MDK+ SK++ G+P +V R ++ I P + Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + L ++ + ++++E+ +D E+ C V+G+ + + + Sbjct: 186 KPANMGSSVGISKVHNEGELIDALKIAA--KYDRKIIVEEGIDAREIECSVLGNDNPEAS 243 Query: 191 --EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 VP +FY Y+ KY S +PA IP +E++ LA A+ A+ RG++R DF Sbjct: 244 VAGEIVPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVDF 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L D + KV+ E+N PG T +S++P++ +G + EL+ +++ A Sbjct: 304 LMDKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELIDELIQLA 351 >gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] Length = 307 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 156/296 (52%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG A L + G +D L D AF LHG Sbjct: 16 VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLK--GFDAAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R D Sbjct: 74 RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRDEAD- 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP GSS+G+ + + L+ + ++ +L+E +V+G E T Sbjct: 133 ---LGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAEKFDQD--VLVEAWVNGPEYTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L + P + FY +E KY S ++ ++ PA + + +++LA A + GC Sbjct: 188 VLGDEALPAIRLQTPHA-FYDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG R D + D + LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 247 RGWGRVDVMRDAQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 307 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 111/291 (38%), Positives = 163/291 (56%), Gaps = 6/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SGKA SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307 >gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4] Length = 358 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 164/343 (47%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + KA AL++ + + I + V Sbjct: 5 ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ +LHG GEDG VQ +LELL +PY +G+ Sbjct: 65 AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LASA MDK+ K + + G+P + + T D + + P +KP Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193 GSS+GI + + L ++ ++ +++IEQ V E+ GV+G+ + V Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDR--KIIIEQGVKAREIELGVLGNDEPECSVPGEI 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +PK DFY Y+ KY ++ ++PA+IP IY++++R+A + +A+ C G+ R+DF Sbjct: 243 LPKKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE- 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG TP S+FP + ++G + EL+ +V+ A Sbjct: 302 DGGIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQLA 344 >gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] Length = 304 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 155/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER++SL SG A +AL+ G+ D L D+ F LHG Sbjct: 13 VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+LL IPYT SG+L SAL MDK R K++ G+P L+ Sbjct: 71 RGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPVL 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP + GSSLG+ ++ + + +++ + D +L E +V+G E T Sbjct: 131 DEGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAA--YDDTVLAEAWVEGEEYTVA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L + P + F+ Y KY + ++ H P+ + + E+ L A A G Sbjct: 189 LLGDQALPSIRLETPHA-FFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIASGG 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D + D + + LE+N PGMT S+ P AA AG F EL+ ++ +A Sbjct: 248 NGWGRVDVMRDT-GGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302 >gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] Length = 309 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A AL +G D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L +PYT +G+ SA+ MDK+++KQV +P P +V + + + Sbjct: 68 RGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDSDAT 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 EIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGREYT 185 Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+ +L V + P+ FY YE KY + + +P + ++++ L+ A QA Sbjct: 186 IVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ AA GYSF EL + ++E Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILEQ 302 >gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802] gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802] Length = 351 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 169/347 (48%), Gaps = 49/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVSL+S +A A+AL+ + + I + ++ VL Sbjct: 6 VGLLFGGRSGEHEVSLNSARAIATALQSGENPQKYDIIPIYIQKNGVWQAGETAQQVLND 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L S Sbjct: 66 AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K + G+P I V+R + + + + P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ +++IE V E+ C V+G+ + + I Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + Sbjct: 244 TYNSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVED 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S++VF EIN PG T S++P++ G F EL+ +++ A + Sbjct: 304 SQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLALERK 350 >gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] Length = 313 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ +I +K ++P L+++ ++ +++E+ ++ Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ LA Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307 >gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] Length = 369 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 170/351 (48%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S+E E+S+ S K+ A+ + ++V I + +L + Sbjct: 6 VAIIFGGRSAEHEISIISAKSIAANINTDRYRVIPIYITHDGEWLLDGIARDILNFDLAT 65 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 D+AF VLHG++GEDG +Q L+ Sbjct: 66 LLRSSSLDAAGKTLRRMTKESGQHPFDRNFTATGIDVAFLVLHGSYGEDGRIQGFLDTCA 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127 IPYT G+LASA++MDK +K V+ G+ V P I + + F P Sbjct: 126 IPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGITLLSSDYLADPDSFHTRIDREFEYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 IKP GSS+GI + +PL L + + ++L+E+ + G E+ V+G+A Sbjct: 186 LFIKPANLGSSVGISKVHNPAELPLALKTACTL--DTKILVEKAIKGREIEVAVLGNAQP 243 Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +V+ P SDFY YE KY ++ +PA+IP + ++V+ LA A +A+GCRG+SR Sbjct: 244 EVSVCGEIEPGSDFYDYEDKYIHNSAKTFIPARIPSVLQEKVRELALRAFKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D S+ + E+N PG T +S++P++ +G F EL ++E A Sbjct: 304 IDFFVDEESKSIILNEVNTIPGFTDISMYPKLMEASGIPFPELATRLLELA 354 >gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169] gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1] gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72] gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E] Length = 333 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 41 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 98 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 99 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 158 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 159 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 216 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 217 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 275 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 276 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 331 >gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] Length = 303 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID+ L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ +K + + + + + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 375 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 166/352 (47%), Gaps = 58/352 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 + ++ GG SSE EVSL + + A++ ++V+ + V D+ Sbjct: 8 LGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEA 67 Query: 44 LVLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELL 75 L L+ P D+ F V+HG FGEDG +Q +LEL Sbjct: 68 LRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISP 126 IPY +G++ASA+ MDK K V + G+P + + R + + + Sbjct: 128 NIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGY 187 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + + L ++ ++ +L++E++V EL GV+G+ Sbjct: 188 PCFVKPANMGSSVGINKAKNREELKHALDVAAKFDR--RLIVEEFVQVRELEIGVLGNEE 245 Query: 187 L--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L V + +FY YE KY + +PA +P + +++ +A A QA+ G+S Sbjct: 246 LMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLS 305 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF +D + K++ E+N PG TP S++P + AG + EL+ +V+ A Sbjct: 306 RVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357 >gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] Length = 349 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAH-------- 48 + +L GG S E EVS++S +A A AL+ D + V + + ++ + Sbjct: 6 IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKNGVWIAGETADEVLES 65 Query: 49 ---------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + ++ F VLHG GEDG +Q +L L+++P+ SG+L S Sbjct: 66 KTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K + G+P V R + D + + P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++S++ +++IE V EL C V+G+ + + + Sbjct: 186 GSSVGIAKARSHSELEAALDSAASYDR--RIVIEAGVTARELECAVLGNDNPKASVVGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ S +PA +P + K++Q +A A + + G++R DF + Sbjct: 244 TFDSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFYVEE 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ ++ EIN PG T S++P++ G SF +L+ +++ A Sbjct: 304 TQAIYLNEINTLPGFTKFSMYPQLWQATGISFEQLVDKLIQLA 346 >gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. 8004] gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris] Length = 318 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q I P ++KP GSS+G+ + LD + + + LL+EQ ++ Sbjct: 139 AQQIHAAAEQIGLPVIVKPANEGSSVGVSRVF--DQAQLDEAVTLAARYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++ +LA Sbjct: 197 GDELTVAVLGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGDAEAQIGQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GC G R D + D + +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEALVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7] Length = 307 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] Length = 308 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVA--YDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + + Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDSDLN 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL L ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILEQ 302 >gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] Length = 307 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ ++ +Q+ L + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L I +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 307 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 132/304 (43%), Positives = 189/304 (62%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 + VL GGIS ER VSL SG+ +AL +AG++V+ I+V + +A L PD+ FN L Sbjct: 6 VVVLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ L IPYTHSG+ ASA++MDK ++ + G+PV LV + Sbjct: 66 HGRFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEEL 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P+VIKP GS++G+ ++ + + ++ + SW+ G Q L+E+Y+ G ELT Sbjct: 126 AEQDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEI--ARSWSFGGQALVEEYIPGRELT 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ D +L VT+I P+S FY YE KY+ S H+LPA++ D +K +A AH A+ Sbjct: 184 VGVLNDRALTVTDIR-PRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHAL 242 Query: 239 GCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG +RSDF +D ++ LE+N QPG+TP S+ PE AA G F L WMVE Sbjct: 243 GCRGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQ 302 Query: 296 ASCL 299 A+C Sbjct: 303 ATCR 306 >gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 304 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV +L + D Sbjct: 67 TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + D ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DF K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] Length = 306 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L + D+AFN LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 ++GEDG VQ LE L IPYT G+LASA+ MDK RSK + + +PV P +++ Sbjct: 67 SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P IKP GSS+G+ IK + + + +++ E+++ G E T Sbjct: 127 AVEAQLGLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ + +I +P+++FY YE KY+ ++ ++ P+ + + ++ LA A +AI Sbjct: 187 CGVIYRKAFPSIKI-IPQNEFYDYEAKYNRDDTIYLCPSDLIPADEQLMRDLALKAFEAI 245 Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DF K++ LE N PGMT S+ P+ A AG +F +L + +++ A Sbjct: 246 GGGNNCGRVDF-LRDADGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKTA 303 >gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 318 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] Length = 304 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 163/300 (54%), Gaps = 9/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV +L + D Sbjct: 67 TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177 + + + P +KP GSS+G++ +K+ + + + H +++ E+++ G E Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEE---FKHLQGEIIAERFIGGGEY 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236 +C V+ L I +P ++FY YE KY+ ++ + P + D ++ LA Q Sbjct: 184 SCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQ 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 AIG G SR DF K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 243 AIGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895] gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895] Length = 371 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ A F V + +D+ ++ + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R D+ + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N + V+PA+IP ++ +++++A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 356 >gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 309 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 160/295 (54%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG AL+ AG ID R V VL D FN+LHG Sbjct: 9 VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG++Q LEL+ +P T SG+L SA+SMDK+ +K++ G+P +++ T Sbjct: 69 RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLPTPDYQVLDGDTDWV 128 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ ++ +P ++++ G + E++V G E T Sbjct: 129 VVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAA--CGGPVFAERWVTGTEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + + P++ FY YE KY + + + +P + + + Q LA A +A+ Sbjct: 187 AAILEGEPLPLIRLETPRA-FYDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEAV 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G RG R D + D + + +E+N PGMT S+ P A AG F+ L+L ++ Sbjct: 246 GARGWGRVDLMVDRV-GVPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVLRIL 299 >gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20] gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 303 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 164/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127 Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP GSS+G+ +K + + + ++ + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAVEEALKF--DSIVLVEAFLAGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P+ +FY Y KY S N+ +++PA + D EV L A++ Sbjct: 186 YSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAYE 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + + + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVM-EDANGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] Length = 310 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV+MGG S EREVSL++G A +AL++ G+ ID+D + L + FN +H Sbjct: 7 VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFNAVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K + + VP I +++ Sbjct: 67 GLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQ 126 Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 I P V+KP GSS+G++++K ++ + D ++ +GD +L E + G Sbjct: 127 DPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQL--DDALQEAFQYGDHVLCEAFFTG 184 Query: 175 IELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+ GVM + + P +FY + KY+ +T+ PA + + +Q++ Sbjct: 185 KEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQKI 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++A+GC G++R+D + + LE+N PGMT S+ P+ AA G SF +L Sbjct: 245 AVAAYEALGCSGVARTDLML-ADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCE 303 Query: 291 WMVEDA 296 +++ A Sbjct: 304 KILKTA 309 >gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] Length = 332 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 186/304 (61%), Gaps = 9/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++EREVSL SG + ALE G +V+QID+DR V + KPD+ FN LHG Sbjct: 18 VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + GVP +V + Sbjct: 78 VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ +D ++ P++ W DQLL E ++ G ELT Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G +L VTE+ + + FY YE KY+ + HV PA IP +I + A A Sbjct: 198 TAVIDGADGPRALGVTELII-EHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 H+ +GC G SR+DF +D + + +F LE N QPGMTP+S+ PE A +AG S+ EL+ + Sbjct: 257 HKVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELI 316 Query: 293 VEDA 296 V +A Sbjct: 317 VREA 320 >gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] Length = 366 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I + R + + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNEEPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FYSY+ KY + V+PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVVSSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G +++L+ ++E A Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIELA 350 >gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 13/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A+L GG S+EREVSLS AL + ++V + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPAL--ETAFAHDDQVMVEQFVAGR 186 Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ +L V EI + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+ + +G SR+D + ++ LE N PGMTP S+FP+ AA G F LL Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFGALLDR 304 Query: 292 MVEDASCLR 300 +++ A R Sbjct: 305 LLQLAREDR 313 >gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU] gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900] gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU] gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978] gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2] gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715] gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] Length = 308 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K++Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7] Length = 319 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ ++ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + +S + Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S FY Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] Length = 303 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ +K + + + ++ + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIPAIEEALKF--DSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 368 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EVSL S + A+ + ++ + + + L Sbjct: 6 VMVVFGGRSGEHEVSLMSATSVLRAMNKEKYNITTVGITKKGIWKLYRGSIDKIQSGEWE 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 K D+ F VLHG FGEDG +Q + E Sbjct: 66 GIADNWAKENNFSTNISVLPSEEGKGIINFGDGKTEKIDVVFPVLHGPFGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS-------QHLI 124 ++ IPY +G+LAS+L+MDK SK++ G+P LV + + + Sbjct: 126 MMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAKYHAFLVKEYKENEKEVLDTIEEKF 185 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + P +KP GSS+GI + + + + ++ + ++++E+ ++G E+ C V+G+ Sbjct: 186 TYPVFVKPANMGSSVGITKVHNREKLEKAIELAA--KYDRKIVVEEGINGREIECSVLGN 243 Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + A +P ++FY Y KY + S +PA +P D+ + ++ L+ ++ + C G Sbjct: 244 DEPIASLPAEIIPSAEFYDYNDKYFAGTSKFEIPANLPEDVIEGIRSLSVKVYKLLDCSG 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR D + S ++ E+N PG T +S++P+M G + EL+ ++E A Sbjct: 304 LSRVDCFIERDSNRILLNEVNTMPGFTQISMYPKMWEATGIEYEELIDRLIELA 357 >gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 308 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2] Length = 308 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] Length = 303 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA AL+ G+ D + KPDLAF L Sbjct: 5 IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q++LE L IPYT S S + MDK+ +K + + Sbjct: 65 HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLNIED 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+K GSS+G+ ++ + + +++L+EQ++ G ELT Sbjct: 125 ALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAVEDV--FKLDEKVLVEQFIKGRELT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D D+ E+ V + FY Y+ KY + + ++ PA++P ++YK VQ + + ++++ Sbjct: 183 VGILDDEVFDIVEVVV-EEGFYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTYKSL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 C+G +R D + D S + LE+N PGMT S+ P+ AA G SF +L+ +++ Sbjct: 242 NCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLVDRIIKS 297 >gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] Length = 366 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++E + G E+ C V+G+ S + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNDSPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FYSY++KY + V+PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVVSSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G ++EL+ ++E A Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIELA 350 >gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] Length = 365 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN] gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN] Length = 313 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ +I +K ++P L+++ + +++E+ V+ Sbjct: 132 ARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDKIVVVEKSVEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G+ L V I VP +FY Y KY + ++ +++P + D ++ LA Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] Length = 304 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 162/298 (54%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG+A +AL G D L L+ D AF LHG Sbjct: 9 VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119 GEDG +Q LE L +PYT SG+L SAL+MDK+R K++ + G+ ++V + D Sbjct: 69 RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 SQ +I+ ++KP GSS+G+ + + S+++ D +++E+++ G E Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGMAKAATASELNEAI--SNAFRFDDTVMLEKWITGREF 186 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ + + E+ P+ FY YE KY + ++ + PA++ + +Q LA A + Sbjct: 187 TVTMISGVAQPIVEMVTPR-GFYDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 246 VGASGWGRVDAMRDQA-GQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILEQ 302 >gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 365 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] Length = 303 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 5/294 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ +L A D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ L R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP GGSSL + + + + + L + + H + ++E + G+E+TCG Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 243 RGYSRADYILR-DDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295 >gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126] Length = 327 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G D L L D A +LHG Sbjct: 22 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P + ++ ++ Sbjct: 82 RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++ + +Q+L+EQY+DG Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAIQD--AFKYDNQVLLEQYIDG 199 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + FY Y KY + + P+ + + ++ +LA A Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L ++ Sbjct: 259 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 317 Query: 295 DA 296 + Sbjct: 318 TS 319 >gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] Length = 365 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] Length = 366 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 54/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S E EVSL S + AL+ + ++V + + + + Sbjct: 7 VYLLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAA 66 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 AH P + F VLHG +GEDG +Q +LE+ +PY Sbjct: 67 AGGRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 G+LAS+++MDK +K + G+ V P + R D + P + Sbjct: 127 VGCGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI +K+ + + + +++ ++ ++++EQ +D E+ V+G+ Sbjct: 187 KPANLGSSVGITKVKRPEDLDRAMDEAARFDR--RIIVEQGIDAREIEVAVLGNDDPIAS 244 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +P ++FY Y KY S S +PA +P D+ +E +R A +A +AI G++R DF Sbjct: 245 VPGEILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + ++F E+N PG T +S++P++ +G + ELL +++ A Sbjct: 305 FLERGTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQLA 352 >gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] Length = 304 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV +L + D Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DF K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 645 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +W +G L+E+++ G EL Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 514 Query: 178 TCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD +L VT+I +FY Y KY + S H+LPA+I D + + LA A Sbjct: 515 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 574 Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 575 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 634 Query: 290 LWMVEDASCL 299 WMVE A+C Sbjct: 635 RWMVEHAACR 644 >gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 376 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 77 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 254 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 314 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 315 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 361 >gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium] Length = 292 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+A AL+ K + D + L K D AF VLHG Sbjct: 2 IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S +S M+K +K + +P+ PS++ N Sbjct: 62 RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GSS+GI + + L +W + LIE++++G E T Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKVTDQSQLNEALAL--AWKYDQNALIERWIEGDEYTVS 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + +L +I V + FY Y+ KY S ++ ++ P +P K +Q +A A +A+ Sbjct: 180 ILNNKALPAIKIIVNR-GFYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R DF+ D ++K++ LEIN PGMT S+ P A G SF EL+L ++ D Sbjct: 239 SNWGRVDFIIDK-NQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292 >gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 318 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E IPYT S +L SALSMDK+R+KQV S G+P + Sbjct: 79 HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+GI + + +L ++ + LL+EQ ++ Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++G+ +L I VPK +Y Y KY + ++ ++ P + D ++ +LA Sbjct: 197 GDELTVAILGETALPSIRI-VPKGQWYDYNAKYLADDTQYLCP-GLDGDAEAQIGQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A G R R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] Length = 308 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 AVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILEQ 302 >gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] Length = 304 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++++ + Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFVVLHDDSDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DF K++ LEIN PGMT S+ P+ A + G F +L + +++ A Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADLCIEILKTA 301 >gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] Length = 353 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 39/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKP-------- 51 +AVL GG S E EVSL S + L D G ++V + + R L ++ Sbjct: 6 IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F VLHG +GEDG VQ +LEL IPY +G+ SA+ MDK+ Sbjct: 66 GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIK 145 K + + G+PV P + + + ++ P +KP GSS+GI Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGISKAY 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYE 203 + + + + + ++L+E+ + G E+ C V+G+ V +P +DFY Y Sbjct: 186 DSAQLEKAI--NEALQYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEIIPCNDFYDYS 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY NS +PAK+ + K+V+ +A A+ C G+ R DF D + +++ +EIN Sbjct: 244 AKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEIN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P++ +G SF ELL +V+ A Sbjct: 304 TLPGFTSISMYPKLWEASGISFNELLQKLVKLA 336 >gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36] gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36] Length = 312 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 160/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG +D L AF LHG Sbjct: 14 VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG++Q LE L IPYT S +L +AL+MDK+R+KQ+ S G+P +V Sbjct: 74 RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P +IKP K GSS+G+ + + + ++++ + +++L+EQ+++G Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGMAKVHNVAELETAV--TAAFAYDNEILVEQWIEG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD L V ++ P + FY Y+ KY S + ++ PA I + +++Q A A Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNT-FYDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R D + D + LE+N PGMT S+ P A AGY+F L+ ++ Sbjct: 251 FHAVAAEGWGRVDAMLDAQ-GQFQLLEVNTVPGMTEKSLVPMAANAAGYNFDSLVSKVLA 309 Query: 295 DA 296 A Sbjct: 310 LA 311 >gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] Length = 303 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ERE+SL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ +K + + + + + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S N+ +V+PA + D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] Length = 303 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 161/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETPLADLKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG+VQ LEL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLREDTDFE 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + L + + + +++ E+++ G E + Sbjct: 127 AVEKRLGLPMFVKPANEGSSVGVVKVK--EKGRLKDVYAELKHMKGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G L I VP ++FY YE KY+ ++ + P+ + + ++ LA +AI Sbjct: 185 CPVLGGRGLPSILI-VPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRGAEAI 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF L K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 GAEGCVRVDF-LKDLDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILKTA 300 >gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S K A++ F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P + + R D + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY + V+PA I I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + EL+ ++E A Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIELA 350 >gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 357 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S A A AL ++V + ++ + Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGG 136 + MDK+ K + G+P V R + S + + P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195 SS+GI ++ Q + L ++ + ++++E V E+ C V+G+ + + Sbjct: 186 SSVGIAKVRSRQELETALDNAA--TYDRRIIVEAGVVAREVECAVLGNDHPQASVVGEIS 243 Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ + ++PA + + +++Q ++ A A+ G++R DF + + Sbjct: 244 FNSDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345 >gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] Length = 323 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 154/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG +AL+ G D + LA + D A LHG Sbjct: 13 VVVLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K S G+ + + S Sbjct: 73 RFGEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVS 132 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS+LG+ +K + ++ + +L E++V G ELT Sbjct: 133 EVVQRLGLPLIVKPAQEGSTLGLTKVKTVDQLQAAFDL--AYKYDPNVLAEKFVSGQELT 190 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 VMG+ +L V I P + Y Y KY + + P+ + D EVQ L A Sbjct: 191 VPVMGEGAGAHALPVIRIQAPDGN-YDYHNKYIGNETKYFCPSGLNSDFEAEVQALCVKA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +Q +GC G R+D L D K + LE+N PGMT S+ P A +G + +L+L + Sbjct: 250 YQVLGCAGWGRADVLVDES-GKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLVLQIAA 308 Query: 295 DA 296 A Sbjct: 309 SA 310 >gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 313 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ +I +K ++P L+++ + +++E+ ++ Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDRIVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G+ L V I VP +FY Y KY + ++ +++P + + ++ LA Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 249 AFDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE] gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056] gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE] gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] Length = 308 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 155/298 (52%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K++Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + +++ Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 302 >gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] Length = 370 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 165/357 (46%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG S E EVSL S +A L+ + + I + + ++A Sbjct: 7 VGVLFGGQSGEHEVSLVSARAIMDGLDPEKYDIIPIGITKQGRWIIAADAHARLLVQADP 66 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG GEDG VQ Sbjct: 67 SKLPGGSISATTTASAGVGDQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQG 126 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122 +LEL+ +PY G+LASA+ MDK +K S G+PV P +LV R + + Sbjct: 127 LLELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIE 186 Query: 123 -LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP GSS+G+ + ++ + +++S++ ++++EQ + E+ V Sbjct: 187 SRLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDR--RIIVEQGIPAREIEVSV 244 Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + +P ++Y Y KY S +S ++PA I L++ +V+ LA A +AI Sbjct: 245 LGNDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DFL + + ++ EIN PG TPVS++ M +G + LL +++ A Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLLDRLIDLA 361 >gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 313 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 162/295 (54%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+++ER+VSL SG AL+ G DV LV K D AF LHG Sbjct: 18 VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K + G+P I+V+ +D Sbjct: 78 RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P ++KP GSS+G+ + ++ + + + ++LIEQ++ G E T Sbjct: 138 VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAV--DFAQQYDSEILIEQWITGREFT 195 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+ +L + ++ DFY ++ KY S + ++ P + + K +Q L A A+ Sbjct: 196 CAVLDGEALPMIQLKTDH-DFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQAFDAV 254 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G R R D + D + + +EIN PGMT S+ P A SF +L+L ++ Sbjct: 255 GARHWGRVDLMLDDQ-NQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLI 308 >gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 365 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V+ + +D+ + Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 + SG+L SA+SMDK +K+++ G+ V P + + R + P IK Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L ++ S++H ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSDEDGYQRALDKAFSFDH--KVLVESAIKGREIECAVLGNDHPQASV 243 Query: 192 I--AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + +FYSY+ KY + + + +PA +P + + ++ +A A Q + CRG++R D Sbjct: 244 CGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ A +G S+ EL+ ++E A Sbjct: 304 FLTEQ-GDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIELA 350 >gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I] gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50] gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I] gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50] gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS] Length = 316 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P ++ T Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + ++ + ++L EQ++ G ELT Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAYELAARF--DAEVLAEQFITGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L V EI P Y YE KY S ++ + PA +P D+ +V +A A Sbjct: 186 VAVLGSGAAARALPVIEIVAP-GGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GC G R DF+ D +R + LE+N PGMT S+ P A G S+ +L + ++ Sbjct: 245 YAALGCEGWGRVDFILDRENR-PWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILA 303 Query: 295 DASCL 299 +A+C Sbjct: 304 EAACK 308 >gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 313 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S ERE+SL+SG+ A AL+ AGF+V +D + L D+AF LH Sbjct: 10 VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE + +PY GI +SA +MDK+++K G+P SI ++R Sbjct: 70 GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129 Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +I+ ++ D + ++ + +LIE ++ G Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSAL--DRALTEAFKLDNAVLIETFMAGT 187 Query: 176 ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G+ +L V EI +FY +E KY++ S H+ PA++ + VQ++A Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+GC G+SRSD + + LE N PGMT S+ P+ AG SF +L + Sbjct: 248 QAHKALGCCGVSRSDVIL-AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRL 306 Query: 293 VEDA 296 +E A Sbjct: 307 IELA 310 >gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] Length = 321 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI ++ ++ +G Q++IEQY+ G EL Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYNFPYGYQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] Length = 368 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F+V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHSNNNVALVPGQQSRQLIAADGAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ V P + + R + + P +K Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ Q + + S++H ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSRVQDRQQYEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDQPQASV 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V+PA I +++++A A +A+ C G++R D Sbjct: 244 CGEIVLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ A +G +R+L+ ++E A Sbjct: 304 FLTADDN-VIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIELA 350 >gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] Length = 357 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S A A AL +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGG 136 + MDK+ K + G+P V R + S + + P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195 SS+GI ++ Q + L S+ + ++++E V E+ C V+G+ + + Sbjct: 186 SSVGIAKVRSRQQLETAL--DSAATYDRRIIVEAGVVAREVECAVLGNDHAQASVVGEIT 243 Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ + ++PA +P I +++Q ++ A A+ G++R DF + + Sbjct: 244 FNSDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345 >gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925] gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium botulinum BKT015925] Length = 343 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 41/335 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDNIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL+IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + G+ ++V + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201 + + L ++ ++ ++L+E ++ E+ V+G+ + VP ++FY Sbjct: 185 AHNREELEKGLSEALKFDR--KVLVETALNAREIEVAVLGNDEPEAATPGEIVPANEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KYS+ S +LPA + ++V+ LA ++ + C G+SR DFL D + +V+ E Sbjct: 243 YEAKYSNAESKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P+M G S+ L+ ++E A Sbjct: 303 INTIPGFTKISMYPKMWQAEGKSYGNLISEIIELA 337 >gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] Length = 313 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 11/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ +I +K ++P L+++ + +++E+ ++ Sbjct: 132 ARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDRIVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G+ L V I VP +FY Y KY + ++ +++P + + ++ LA Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 249 AFDVLGCTDWGRADFMLDG-EGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] Length = 313 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307 >gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 326 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL SG+A +AL AG D L K D +LHG Sbjct: 28 VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQLHELVEQKFDRVLIMLHG 87 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P + ++ Sbjct: 88 RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 147 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + ++KP + GSS+G+ + + + Q ++ + D++L+EQ++ G Sbjct: 148 ANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAIQQ--AFEYDDKVLLEQFIQG 205 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L ++ P+ DFY YE KY S ++ + P+ + + ++ +LA A Sbjct: 206 SEYTVSLLNGIALPSISMSTPR-DFYDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALNA 264 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R DF+ D + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 265 FDAVAGTGWGRIDFMQDAQ-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVLA 323 Query: 295 DA 296 A Sbjct: 324 TA 325 >gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 317 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 179/307 (58%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D +++ L D+AF LH Sbjct: 12 VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE + IPYT SGI AS+++++K ++K + G+ V S+ ++ + Sbjct: 72 GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131 Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++LI P V+KP GSSLG+ +++ I + + + + ++EQ++ Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALA--VDVEAMVEQFI 189 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT GV+G+ +L V +I + +FY+Y KY++ S H+ PA + D+ + Q Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH +GCRG+SR+D + D + LE N PGMT S+ P+ A AG F++L Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVDA-DDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308 Query: 290 LWMVEDA 296 ++ A Sbjct: 309 EKLIALA 315 >gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 336 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 115/332 (34%), Positives = 166/332 (50%), Gaps = 37/332 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50 +AVL GG SSEREVS++S +AL D G V ID V+ V +A+ Sbjct: 3 IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62 Query: 51 P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 P D+ F LHG GEDG +QA+L+ IPYT SG+L Sbjct: 63 PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK SK++ GVP I+ + I P ++KP GS++G+ V+K Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +++W+H +++IE++V G EL GV+ +L V EI + + Y+ KY Sbjct: 183 PEQLEEAIATAAAWDH--EVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + PA +P + EVQRLA AH+A+ SR DF D R ++ LE N P Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQGR-LWCLEANTLP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GMT S+ P+ AA G F EL + E A Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCELALA 331 >gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] Length = 303 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127 Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP GSS+G+ K + + + ++ + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAIEEALKF--DSIVLVEAFLTGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L +A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LTDERQAEVAKLVKVAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + + + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVM-EDANGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1] gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1] Length = 339 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 39/337 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S E EVSL S ++ +AL F V+ + + + + Sbjct: 5 ILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSS 64 Query: 46 ----------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 A D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ Sbjct: 65 QGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKD 147 +KQV+ S G+P L R + P +KP GSS+GI + Sbjct: 125 TKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSP 184 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203 + + D + ++ ++++E E+ G++G+ + + +DFY YE Sbjct: 185 EEL--DAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSFDADFYDYE 242 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + +PA+IP ++ + ++ A A +A+ C G++R DF + + ++F E+N Sbjct: 243 TKYTEGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG T S++P++ AG S+ EL+ +VE A R Sbjct: 303 TMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALEER 339 >gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 301 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 121/296 (40%), Positives = 180/296 (60%), Gaps = 5/296 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S ER++S+ +G+ACA+AL+DAG+ IDVDR++ L + PD+ FN LHG + Sbjct: 6 VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K + G+ + L++ T S Sbjct: 66 GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSME 125 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I PYV+KP+ GSS+ + + L +W + ++E+Y+ G ELT V Sbjct: 126 -IPFPYVLKPVNDGSSIATYIFNTPDAEKL---SEQAWIYNTHAMMERYIKGRELTVTVF 181 Query: 183 GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + VTEI FY++ KY + S H LPA IP + A H +GCR Sbjct: 182 MNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGCR 241 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GISRSDF+ + + +F+LEIN QPGMTP S+ PE A+AG SF +L+ +V++A+ Sbjct: 242 GISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEAT 297 >gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] Length = 319 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L + AFN+LHG Sbjct: 22 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 82 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 142 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 199 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 200 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 258 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 259 IGAEGCVRVDF-LRDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCIEILKTA 316 >gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 383 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 100/361 (27%), Positives = 163/361 (45%), Gaps = 67/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S E EVSL S K+ AL+ + I + + L +P Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67 Query: 52 ---------------------------------------------DLAFNVLHGNFGEDG 66 D+ F VLHG FGEDG Sbjct: 68 ALPSKSAQNASSPSNRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------- 118 +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + R + Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDGRIV 187 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P +KP GSS+GI + + + + + S++ ++++E+ +D E+ Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDR--RVIVEEAIDAREI 245 Query: 178 TCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G++G+ V VPK +FY YE KY + +PA + + K V+ A A Sbjct: 246 EIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAF 305 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QAI G++R DF + + +V EIN PG T S++P++ +G ++ +LL ++E Sbjct: 306 QAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIEL 365 Query: 296 A 296 A Sbjct: 366 A 366 >gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 364 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822] gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis] Length = 316 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 159/305 (52%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P ++ T Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + ++ + ++L EQ++ G ELT Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAYELAARF--DAEVLAEQFITGRELT 185 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L V EI P Y YE KY S ++ + PA +P D+ +V +A A Sbjct: 186 VAVLGSGAAARALPVIEIVAP-GGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GC G R DF+ D +R + LE+N PGMT S+ P A G S+ +L + ++ Sbjct: 245 YAALGCEGWGRVDFILDRENR-PWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILA 303 Query: 295 DASCL 299 A+C Sbjct: 304 KAACK 308 >gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] Length = 362 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDV-- 38 +A++ GG S+E EVS+ S + A AL+ + F + + D Sbjct: 7 VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66 Query: 39 -------DRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + V +P D+AF +LHG +GEDG VQ + ++L +PY Sbjct: 67 STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGG 136 +++SA MDK K++ G+P +LV R + + P IKP G Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKLGLPMFIKPANAG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIA 193 SS+G+ +K + L + + +++IE+Y+ G E+ C V+G Sbjct: 187 SSIGVHKVKTEAEFGPAL--EDALRYDRKVIIERYIQGREIECSVLGTTDAPKASTAGEV 244 Query: 194 VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + DFYSYE KY + +PAKI +Q LA A+GC G++R DF Sbjct: 245 ITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLTE 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S++P+M ++G ++ +L+ +++ A Sbjct: 305 S-GALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLIDLA 347 >gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 315 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 7 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 67 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +W +G L+E+++ G EL Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 184 Query: 178 TCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD +L VT+I +FY Y KY + S H+LPA+I D + + LA A Sbjct: 185 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 244 Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 245 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 304 Query: 290 LWMVEDASCL 299 WMVE A+C Sbjct: 305 RWMVEHAACR 314 >gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] Length = 301 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 168/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ + ++V I +D+ ++ D A LHG Sbjct: 3 IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK V+ + G+ P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P V+KP GGSS+ ++K+++ I S ++ +++IE+++ G E+ Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIE--NCVSEAFKWDSEVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + L V I PK++F+ + KY + ++ ++ +++KEV+++A ++A Sbjct: 181 TCPVYNNKMLPVIAIK-PKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LEIN PGMT S+ P+ AA F EL+ +++D+ Sbjct: 239 LKCEVYSRVDMIVTE-EGVPYILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296 >gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV +L + D Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DF + K++ LEIN PGMT S+ P+ A + G F +L + +++ A Sbjct: 244 IGADGCSRVDF-LKDMDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLCIEILKTA 301 >gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 364 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + ++ + ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] Length = 334 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSER VSL SG+ AL+ G D L D AF LHG Sbjct: 22 VVVLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLGDLEKAGYDRAFIALHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+ + +P P ++ Sbjct: 82 RYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLA 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP GS+LG+ + +P +++ + +L E++V G ELT Sbjct: 142 GLAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAA--DIDFPVLAERFVQGRELT 199 Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G +L + EI P + Y Y KY + ++ ++ PA + + ++ LA A Sbjct: 200 VAVIGSGAAARALPIVEIRAPNGN-YDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAA 258 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R D + D +++ + LE+N PGMT S+ P A AG S+ +L+L + Sbjct: 259 YRAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTA 318 Query: 295 DAS 297 AS Sbjct: 319 QAS 321 >gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 369 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 10 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 70 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I + R D + + P +K Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 247 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 307 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 308 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 354 >gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] Length = 366 Score = 324 bits (831), Expect = 9e-87, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG SSE EVSL S K A++ F V + +D+ L Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R D + P IK Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + S++H ++L+E + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAFSYDH--KVLVESAIVGREIECAVLGNDHPEASV 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY S + V +PA +P ++ ++ +A A QA+ C+G++R D Sbjct: 244 CGEIVVHDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V E+N PG T +S++P++ G + L+ ++E A Sbjct: 304 FLTPQED-VIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIELA 350 >gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] Length = 364 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 105/339 (30%), Positives = 164/339 (48%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVS S A L+ F+V + + + L Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V R ++ + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196 GI + ++ + ++ + +++IEQ ++ E+ CGV G+ S EI + Sbjct: 189 GISKVHDERGLKKAC--ELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245 Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +FY YE KY +PA++ + + V+ LA A++A+ C G +R DFL D + Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETE 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344 >gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578] Length = 364 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 163/339 (48%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVS S A L+ F+V + + L Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V R ++ + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196 GI + ++ + ++ + +++IEQ ++ E+ CGV G+ S EI + Sbjct: 189 GISKVHDERGLKKAC--ELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245 Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +FY YE KY +PA++ + + V+ +A A++A+ C G +R DFL D + Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETE 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344 >gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] Length = 305 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 165/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+A +AL+ G D L L PD F LHG Sbjct: 8 VVVLYGGDSAEREVSLKSGEAILAALQRGGVAPIAFDPAEGGLAGLEALAPDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+LL IPYT SG+LASAL MDK R+K V + G+P +++N + + Sbjct: 68 RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAESDWN 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP+ GS+LGI ++ +++ ++ + +++ E+++ G E T Sbjct: 128 AVVERLGLPLIVKPVHEGSTLGITIVDSAETLAAAYRDAA--RYDARVMAERFIQGEEYT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + VP S FY YE KY S + + LP + K + L A +A+ Sbjct: 186 VSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEAV 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D + D R + LE+N PGMT S+ P+ AA+AG F L+L +++ A Sbjct: 245 GCRGWGRVDVMRDDQGR-FWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301 >gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 318 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCP-GLEGDAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.] Length = 312 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 177/298 (59%), Gaps = 13/298 (4%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE 64 GGIS EREVS SG AL+ + V + D + +++ D A +LHG FGE Sbjct: 3 GGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPFGE 62 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDS 120 DG +Q +L+LL+IPY SG+L SA++M+K +KQ+ G+PV P I++ + Sbjct: 63 DGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYKTC 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P+++KP+ GGSS+G+ ++K D+S + S+++ D +LIE +++GIE+T G Sbjct: 123 EKRLGSPFIVKPVSGGSSIGVSIVKSDKSFNEAV--ESAFSCDDTVLIETFIEGIEITGG 180 Query: 181 VMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G+ +L + EI K+ F+ Y KY + + + PA+I + ++ Q A +AH+ Sbjct: 181 VIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMAHK 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C+G SR+D + ++++ LE N PGMT S+ P+ A AG SF +LL ++E Sbjct: 241 ALFCKGYSRTDMIL--SGKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIE 296 >gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] Length = 323 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 + +L GG S+ER+VSL +GKAC ALED G + ID + + L L + D + Sbjct: 3 IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG GEDG+VQ +LE L +PY SG LASAL+MDK+ SKQ+ + G+P ++ + Sbjct: 63 LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPTPEWLVWDEAQ 122 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P V+KP GS++GI + + + S+ L +SS ++ +E+Y+ Sbjct: 123 PLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASS--VSSRVFLERYIP 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEAAGLR 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GC G++R D D + LE+N PGMTP S+ PE AA G++F EL+ M+ Sbjct: 241 AYRVLGCEGLARVDLRVDADEN-PWVLEVNTLPGMTPTSLCPEAAAALGWTFTELVERML 299 Query: 294 EDA 296 +DA Sbjct: 300 QDA 302 >gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] Length = 313 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P D E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAQGNA-YFLEVNTAPGMTDHSLPPKAARAIGIGYSELVVKVL 307 >gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 295 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 15/298 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA +AL+ G+ D + + + PDLAF L Sbjct: 8 IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q++LE L I YT S SA+ MDK+ +K+++SS +PV + Sbjct: 68 HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQTF------- 120 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 S+ I P V+KP + GSS+G+ + + + L + + ++IEQ++ G E+T Sbjct: 121 -SKDNIKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDYKN---IIIEQFIKGREIT 176 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + EI V FY Y+ KY S + ++ PA+I + +++ ++A + Sbjct: 177 VSILNGKILPIVEIVV-DDGFYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D + D + + LEIN PGMT S+ P+ A G SF EL+ ++E A Sbjct: 236 NCKGAVRIDMIIDK-NNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292 >gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 318 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+S+ER+VSL +G+A + AL G+ V +IDV R + LA K D+A+ +HG Sbjct: 18 VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116 +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV + G+P Sbjct: 78 RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP + GSS+G+ + K + + ++ + LL+EQ+V G E Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAVTDAA--KYAGTLLVEQFVKGRE 195 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAH 235 + GV+ D +L V E+ + +FY Y+ KY + + ++ PA +P D Y V + AH Sbjct: 196 VQGGVLDDEALGVIEVRAAR-EFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAH 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GC G SRSD + VF LE N PGMT S+ P++AA G F L ++ Sbjct: 255 QALGCSGGSRSDVIVT-DGGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLG 313 Query: 296 ASCLR 300 A CL+ Sbjct: 314 A-CLK 317 >gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] Length = 317 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG+A A+ L + G + ++D+ + D AF LHG Sbjct: 19 VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAATFDRAFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+L+LL IP+T S ASA++MDK+++KQ+ S +P ++ + Sbjct: 79 EGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPTPDYRVLQSSDDFA 138 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + +KP+ GSS+G+ + + + + ++ E V G E T Sbjct: 139 ACLQALGGSVFVKPVHEGSSIGMTCANNKEELKAAFEAAEKF--DSEVFAESTVVGREFT 196 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L E+ +P + FY Y+ KY S + ++ P + D KE+ LA + + I Sbjct: 197 VAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSFKMI 255 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GC G R D L D LE+N PGMT S+ P A G +F EL+ ++ Sbjct: 256 GCSGWGRVDALQDEAGN-FHLLEVNTVPGMTDHSLVPMAARAVGLNFSELVAEIL 309 >gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel] gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel] Length = 354 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S K + AL G+KV+ ID+ + L +KPD+ FN LHG Sbjct: 58 IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKP+ GSS+GI VI ++ + + +GDQ++IE+Y+ G EL Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA---NYDFPYGDQVIIEKYIKGRELQVA 234 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA IP ++Y ++ + ++ + C Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +FL + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351 >gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 309 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A A+AL G +V ID++R V L + PD+ FN LHG Sbjct: 3 IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+ G+P + + Sbjct: 63 KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIPTPKFLAWTGAEYAT 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P VIK GS++G +++++ + + + + + + E Y Sbjct: 123 GKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGELEPAI--AGALKYDLSFMAEAY 180 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T V+G+ L + EI V + FY Y+ KY+ S H++P ++P D+ Sbjct: 181 LAGPEITAAVLGNRKPQVLPLIEI-VSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAAT 239 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA + +GCRG +R DF+ R+ +E+N PGMT S+ P+ A AG F +L Sbjct: 240 SLAGRTYALLGCRGFARVDFIV-AGGREPQVIEVNSVPGMTATSLVPDAARAAGLDFPDL 298 Query: 289 LLWMVEDA 296 + +V+ A Sbjct: 299 VQKIVDLA 306 >gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] Length = 315 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AV+ GG SSER VSL SG A AL AG ID+ + L D AF Sbjct: 16 VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 +LHG GEDG +Q L++L PYT SG+ ASA+ MDK+R+K + +P P ++ + Sbjct: 76 LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135 Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + L ++ + ++ E ++ Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAA--EYDRTVIAESWMS 193 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++ +L ++ + FY ++ KY + ++ + + + E++RLA Sbjct: 194 GGEYTVAILDGQALPPIQLITDHA-FYDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+GCRG R D + D LE+N PGMT S+ P A AG SF EL++ ++ Sbjct: 253 AFSAVGCRGWGRVDAMRDECGN-FQLLEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311 Query: 294 EDA 296 A Sbjct: 312 RTA 314 >gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF] gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii] Length = 308 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K++Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ GYSF EL + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILEQ 302 >gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208] gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3] Length = 361 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVTKALNTDKFDIHPIYITEKGEWQRGPLLTEPVSNVKML 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG +Q +LELL +PY Sbjct: 65 QLEQNGESFALSALNREMFPEASADEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+P + + + P +KP Sbjct: 125 NGVLASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEEELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + ++ + ++++E+ + G E+ GV+G+ + + Sbjct: 185 ANLGSSVGISKCRNREELEKAF--ELAFEYDRKIVVEEGIAGREIEIGVLGNDEPKCSAV 242 Query: 193 AV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK+DFY Y+ KY ++ ++PA++ + Y E+ +A A +AI G+ R+DF Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 303 TN-DGQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 347 >gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 287 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 13/288 (4%) Query: 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 SG+A + L +AG ID L D F LHG GEDG +Q +LE L++ Sbjct: 3 SGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQL 62 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPY 128 PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR + S + P Sbjct: 63 PYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLPL 122 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 ++KP GSS+G+ + K + L++ ++ H +LIE+++ G E T ++GD L Sbjct: 123 IVKPSHEGSSVGMSKVDKISELQGALVE--AFRHDTDVLIEKWLSGPEFTVAILGDEVLP 180 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 I P FY YE KY S + + P+ + ++ +++ L+ A+QA+GC G R D Sbjct: 181 SIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVDV 239 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + D + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 240 MQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 286 >gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638] gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 366 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R D + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRDQHSFAQITAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQFADAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY + V+PA + +I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ +G S+ EL+ ++E A Sbjct: 304 FLTA-ENDVIINEINTLPGFTNISMYPKLWQASGISYPELITRLIELA 350 >gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 361 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E EVS S + + ++ + V + + + L + Sbjct: 6 VAVLFGGQSGEHEVSRVSATSIINNIDRDKYDVYMVGITKKGEWYLYNGDIEKIATGEWE 65 Query: 50 ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG VQ +LELLE+PY Sbjct: 66 KDAVPALIGPSTKYKGILAFKDSRYEFYPIDVVFPVLHGPNGEDGTVQGLLELLEMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIK 131 +L+S+L MDK+ SK++ G+P +V R +++ I P +K Sbjct: 126 PNVLSSSLCMDKVFSKRIFLEAGIPTPKFTVVYRKELNNVDNYEEIRRRVSEIGYPCFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190 P GSS+GI + + + L +S + +++IE+ +D E+ C V+G+ + + + Sbjct: 186 PANMGSSVGITKVHNENELMDGLKLAS--KYDRKIIIEEGIDAREIECSVLGNDNPEASI 243 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VP +FY Y+ KY S +PA IP +E++ LA A+ A+ RG++R DFL Sbjct: 244 AGEIVPAHEFYDYDAKYFDEASKLFIPAPIPDVKMEEIRELAIKAYIALDVRGMARVDFL 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + KV+ E+N PG T +S++P++ +G + +L+ +++ A Sbjct: 304 MDKNTGKVYLNELNTIPGFTKISMYPKLWEASGKPYSKLIDDLIQLA 350 >gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] Length = 315 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 171/305 (56%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A++ GG S EREVSL AL+ ++V + D + + A D+AF +LH Sbjct: 6 LALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHIDVAFLLLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY +G+L SAL+MDK +K + G+PV P ++V + Sbjct: 66 GVHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGDLA 125 Query: 120 SQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P V+KP++ GSS+G+ ++++ + +P L + H +++++E Y+ G Sbjct: 126 DTRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAALRLAL--RHDNEVMVEAYIKGR 183 Query: 176 ELTCGVMGDA---SLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT GV+G+A +L + EI + +F+ YE KY S + PA + ++ ++ Q A Sbjct: 184 ELTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQAYA 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+++ RG SR+D + +++ LE N PGMTP S+ P+ AA AG F LL Sbjct: 244 MEAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALLDR 301 Query: 292 MVEDA 296 +V A Sbjct: 302 LVALA 306 >gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 365 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 162/348 (46%), Gaps = 51/348 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG S E EVSL S + +AL+ F+V I + ++ Sbjct: 6 VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65 Query: 45 ---------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 VL L P DL F VLHG FGEDG VQ L+L IPY S Sbjct: 66 QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L S+L+MDK+ K+++ G+ V R + + +S P +KP Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPIFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI +K + + + + ++ + L E+++ G E+ ++G+ + V Sbjct: 186 NLGSSVGISKVKNREELIQGIDLAVKYDM--KCLAEEFIPGKEIELSILGNDNPKTSVPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P ++FY Y KY + S V+PA + + +++ + A + + C G+SR D+ Sbjct: 244 EIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDYFVL 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V+ EIN PG T +S++P++ +G S+ +LL ++ A Sbjct: 304 EDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALAR 351 >gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP] gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP] Length = 303 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 163/298 (54%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +S P +KP GSS+G+ +K + + + +++ +L+E+++ G E Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLPAI--TAALEFDTIVLVEEFLTGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P +FY Y KY S + +++PA + + EV ++ A+ Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYLSDKTQYIVPA-LTNERQAEVAKIVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +GCRG SR D + + ++ +E+N PGMT SIFP+ AA G SF +L+ ++E Sbjct: 244 VVGCRGWSRIDVM-EDQNQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLE 300 >gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] Length = 366 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 155/343 (45%), Gaps = 51/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E EVSL+S ++ AL+ F V I +DR L Sbjct: 6 IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG GEDG +Q + E +PY Sbjct: 66 YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK K + + +P P ++V R +S + + P +KP Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI + + + +L++E+ ++ E+ V+G+ + V Sbjct: 186 NMGSSVGISKATNRAELVAAFDDAV--RYDRKLIVEKGINVREIEVSVLGNDEVVASVPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP +FY Y+ KY++ +S ++PA I Q +A A +AI G+SR DFL D Sbjct: 244 EIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLD 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S +V+ EIN PG T +S++P++ G + ELL +V+ Sbjct: 304 KNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVD 346 >gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 303 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + + +P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127 Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP GSS+G+ +K + + + ++ + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAVEEALKF--DSIVLVEAFLAGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +I +P+ +FY Y KY S N+ +++PA + D EV L A++ Sbjct: 186 YSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAYE 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + + + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVM-EDANGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] Length = 308 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 AVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 246 VGAESWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] Length = 343 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 41/335 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G++ASA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201 Q + L ++ ++ ++L+E ++ E+ V+G+ VP ++FY Sbjct: 185 AHNRQELESGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPMAATPGEIVPANEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KYS+ S +LPA + L+ ++V+ LA + + C G+SR DFL D + +V+ E Sbjct: 243 YEAKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P+M G ++ EL+ ++E A Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337 >gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 310 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 176/299 (58%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SG A AL GF +DV R + LVL+ AF LHG Sbjct: 9 IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ S G+ P R S Sbjct: 69 RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P V+KP++ GSS+GI ++K + L ++ H D++L+EQ++ G E+ Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVK--EESQLAAAVKLAFRHDDEILVEQFIKGQEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D + EI V +++FY +E KY+ + H PA++ +Y+E R+ AH A+ Sbjct: 187 VGILDDRPMGAIEI-VSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 GCR SR D L P + + LE+N PGMT +S+ PE A A F EL+ ++ A Sbjct: 246 GCRCYSRVDLLVTPA-GECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERIILSA 303 >gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227] Length = 370 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + ++ + ++++E+ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 310 FLT-LENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 356 >gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1] Length = 303 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 5/294 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ +L A D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ L R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP GGSSL + + + + + L + + H + ++E + G+E+TCG Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 243 RGYSRADYILR-DDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295 >gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] Length = 383 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 100/361 (27%), Positives = 163/361 (45%), Gaps = 67/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S E EVSL S K+ AL+ + I + + L +P Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67 Query: 52 ---------------------------------------------DLAFNVLHGNFGEDG 66 D+ F VLHG FGEDG Sbjct: 68 TLPSKGAQNTASPSKRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------- 118 +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + R + Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWTQDDGRIV 187 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + + P +KP GSS+GI + + + + + S++ ++++E+ +D E+ Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDR--RVIVEEAIDAREI 245 Query: 178 TCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G++G+ V VPK +FY YE KY + +PA + + K V+ A A Sbjct: 246 EIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAF 305 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QAI G++R DF + + +V EIN PG T S++P++ +G ++ +LL ++E Sbjct: 306 QAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIEL 365 Query: 296 A 296 A Sbjct: 366 A 366 >gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 318 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 164/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ ++E ++PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGLCTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q I P ++KP GSS+GI + + ++ ++ + LL+EQ ++ Sbjct: 139 ADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+G+ +L I VPK +Y Y KY + ++ ++ P + D ++++LA Sbjct: 197 GDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYLCP-GLEGDAETQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A G RG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2] gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2] Length = 307 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG A + L + G +D L D AF LHG Sbjct: 16 VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLR--GFDAAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R + Sbjct: 74 RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGREEAE- 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP GSS+G+ + + L+ + ++ +L+E +V+G E T Sbjct: 133 ---LGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAEKFDQD--VLVEAWVNGPEYTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L + P FY +E KY S ++ ++ PA + + ++ LA A + GC Sbjct: 188 VLGDEALPAIRLQTPHV-FYDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG R D + D + LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 247 RGWGRVDVMRDEQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] Length = 364 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + ++ + ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 L V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLT-LENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] Length = 313 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307 >gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] Length = 377 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A AL +++ I + + VL Sbjct: 32 VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L+++PY SG+L S Sbjct: 92 GKPLSTESDDSVGLWQFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 151 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K G+P P + + R + + + + P +KP Sbjct: 152 AVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPANL 211 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++S++ ++++E V E+ C V+G+ + + + Sbjct: 212 GSSVGIAKARTRSELETALDAAASYDR--RIIVEAGVSAREVECAVLGNDNPKASIVGEI 269 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ + ++PA IP I ++Q ++ A A+ G++R DF + Sbjct: 270 TFNSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFFYVEK 329 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T S++P++ +G F +L+ +++ A Sbjct: 330 TGEVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQLA 372 >gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437] Length = 367 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AVL GG S E VSL S + A++ V + ++ Sbjct: 7 VAVLFGGKSGEHAVSLQSAASVIQAMDPEKMDVFPVLINPEGKWQPGEYALPALEGKMEP 66 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 VL + D+ F VLHG FGEDG +Q +LE+ +IPY Sbjct: 67 KLLEELGKRSTARDPLPVTTSLPVLKWEEIDVVFPVLHGTFGEDGTIQGMLEIADIPYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LASA+ MDK+ K++ + G+P R ++ + + P +KP Sbjct: 127 AGVLASAVGMDKVMMKKIFAQEGLPQGDFTFCLRRAIEQDIDTVISGIEAEFAYPCFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI K + + L ++ + ++++E+++D E+ V+G+ V Sbjct: 187 ANLGSSVGISKAKNREELKGALQLAA--RYDRKVIVEEFIDAREVEVAVLGNEEPVASVP 244 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V +DFY Y KY S +PA +P + +E+ LA A+Q I C G++R DF Sbjct: 245 GEIVSSNDFYDYRAKYIDGKSEMRIPADLPEPVLEEISGLALKAYQGIDCSGLARVDFFI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K+ EIN PG TP S++ + ++G S+ EL+ +++ A Sbjct: 305 RKSDGKILINEINTMPGFTPFSMYANLWKHSGISYPELISRLIDLA 350 >gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] Length = 343 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 165 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 166 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 223 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 224 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 283 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340 >gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] Length = 367 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ V P + + R + P IK Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ L + S++H ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVQDRAGFDAALALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY + + V+PA+I ++ +++ +A A +A+ C G++R D Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ A +G S+ EL+ ++E A Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIELA 350 >gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 311 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 8/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG+A AL G +D + L D AF LHG Sbjct: 12 VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVDTAQVALAELT--GFDRAFIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L A+ MDK R+K + +PV P L+ T Sbjct: 70 RGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALLRPETNRQ 129 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP GSS+G+ +++ L+ ++ + + D +L E++++G E T Sbjct: 130 ALIGSVGLPLMIKPAHEGSSIGMAKVERP--EELEAARAEAARYDDLVLAERWIEGGEYT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ +L + P+ FY +E KY S ++ + PA + +++++LA A + Sbjct: 188 VAILGEEALPAIRLETPR-GFYDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFRVA 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R DF+ D R + LEIN PGMT S+ P A G F EL ++ Sbjct: 247 GASGWGRVDFMRDRQGR-FWLLEINTIPGMTDHSLVPMAARAVGIDFDELCWRIL 300 >gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 364 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 167/301 (55%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R + Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +K GSS+G+ +K + + + ++ + +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKF--DSIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + + K +E+N PGMT SIFP+ AA G SF +L+ ++E + Sbjct: 244 VVGCRGWSRIDVM-EDGEGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] Length = 303 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 166/301 (55%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +K GSS+G+ +K + + + ++ + +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKF--DSIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ +P +FY Y KY S N+ +V+PA + + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + + K +E+N PGMT SIFP+ AA G SF +L+ ++E + Sbjct: 244 VVGCRGWSRIDVM-EDGEGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] Length = 291 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 100/294 (34%), Positives = 172/294 (58%), Gaps = 7/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ + L +KPD F LHG Sbjct: 3 VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMD 119 +GEDG VQ +LE+L+IPYT S +ASA+S+DK +K++V S G+ ++ + Sbjct: 63 RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP++ GSS+G+ +++ + + L +++++E++V+G ++T Sbjct: 123 NTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLL--KKTERVMVEEFVEGRDMTV 180 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ +L V EI +PK Y YE KY+ S + + + K++Q ++ + + Sbjct: 181 GILKGEALPVVEI-IPKKGVYDYECKYTKGMSEYRILK--DEKLSKKLQEISLKISKFLS 237 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +R DF K+F+LE+N PGMT +S+ P A G F++L+ ++ Sbjct: 238 LKDFARIDFRVTK-EGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] Length = 313 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307 >gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2] gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2] Length = 305 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 + V+MGG S+EREVSL +G+ + L+ + ++V I +D+ + + H D A L Sbjct: 3 IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ S GV + + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGVLTPAGLCWQGMGD 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + + P ++KP GGSS+GI ++ ++ + + ++ + +L+E ++ G Sbjct: 123 YDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKACAL--DQTILVEPFIQGT 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELTC ++ L + I S+++ Y+ KY + + ++P I + V+ A ++ Sbjct: 181 ELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEE-KVIQLPPVIEQRVRETALASY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + C+ +R D + + LE+N PGMT S+ P+ AA AG +F +LL ++ Sbjct: 240 RLLQCKVYARIDMIL--CQDVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDRIITS 297 Query: 296 ASCLR 300 + R Sbjct: 298 SLHER 302 >gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] Length = 375 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 165/355 (46%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAH---- 48 + V+ GG S E +VSL S +A A++ F+V I + R LA Sbjct: 10 VGVIFGGRSGEHDVSLRSAQAILRAIDRERFEVVPIGITREGRWLSGGDPLRQLAATSRL 69 Query: 49 ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72 + D+ F VLHG +GEDG VQ +L Sbjct: 70 ALAPGDDPPAEESDLGSALAVPETGHAVEVAGAGVVQQLDVVFPVLHGPYGEDGTVQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 EL ++PY +G+L SA+SMDK+ +KQ+ G+PV P + V R + + Sbjct: 130 ELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWLWVTRRQWERDPEGVAARVERE 189 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP GSS+G+ + +P + +++ + +L++E+ +D EL V+G Sbjct: 190 LGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAA--RYDRKLVVERGIDARELEVSVLG 247 Query: 184 DASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + V P ++FY Y+ KY S ++PA I + V+ +A A + + Sbjct: 248 NDEPITSVVGEIRPVNEFYDYQAKYVDEGSELLVPAPITQEQSDTVREMAVRAFKVVDAA 307 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + ++ EIN PG T +S++P + +G SFREL+ ++E A Sbjct: 308 GMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWEASGLSFRELVSRLIELA 362 >gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] Length = 329 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE+ G KV++ID+DR V +A +KPD+ FN LHG Sbjct: 13 IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 73 VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ + + P+ W +LL E Y+ G E+T Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G +L VTE+ PKS FY ++ KY+ + HV PA IP I +A A Sbjct: 193 AAVVDFPEGPRALAVTELK-PKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKA 251 Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 H+ +GC+G SR+DF +D + +F LE N QPGMTP+S+ PE A +AG + L+ + Sbjct: 252 HKVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETI 311 Query: 293 VEDASCLR 300 + A+ LR Sbjct: 312 I--AAALR 317 >gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 370 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] Length = 309 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 +A+L GG SSEREVSL SG AL+ A + + + D + ++ D+A ++H Sbjct: 6 LALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +L+LL +PY SG++ASAL+M+K SK + G+ V ++ +R Sbjct: 66 GRWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAI 125 Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P VIKP+ GSS+G+ V + + + ++ +++ ++L+E+++ G+ Sbjct: 126 DPRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEALAYDR--RVLVEEFISGM 183 Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ + L + EI KS F++YE KY + ++PA++ ++ VQ Sbjct: 184 EVTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECG 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+GC G SR+D + +++ LE N PGMT S+FP+ A G F LL Sbjct: 244 LTAHRALGCWGYSRTDTIVR--DGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDR 301 Query: 292 MVEDA 296 +VE A Sbjct: 302 LVELA 306 >gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] Length = 329 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 160/296 (54%), Gaps = 13/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG AL G D L H F LHG Sbjct: 12 VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ + G+P + + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P ++KP + GSS+G+ + + + + S+ ++ +L E +++G Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSAGYDAD--VLCEAFIEG 189 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELTC V+G+ +L V I P + Y Y+ KY + ++ P+ + ++ +E+QR+ Sbjct: 190 EELTCPVLGEGAHAVALPVIRIVPPAAG-YDYQNKYFTDEVQYLCPSGLSAELEREIQRI 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +++A+GCRG R+D + ++ F LE+N PGMT S+ P A +G S+ Sbjct: 249 TLASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISYE 304 >gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 364 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] Length = 360 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 165/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S + ++ ++ I + + +L Sbjct: 6 IAVLFGGRSGEHEVSLMSAVSVLRNMDKDKYEPIMIGITKEGRWMLYEGALEDIEENRWQ 65 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D F VLHG GEDG VQ +LEL +IPY Sbjct: 66 ISARPVVLAPDPSYKGFIDIKRDCTFIPVDAVFPVLHGPHGEDGTVQGLLELADIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPS---------ILVNRFTMDSQHLISPPYVIKPL 133 G+LAS+L+MDK+ SK+V G+ V + F ++ + P +KP Sbjct: 126 GVLASSLAMDKVLSKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI + + + + ++L+E+++DG E+ C V+G+ + + + Sbjct: 186 NMGSSVGITKAHNRDELMEAIELAG--KYDRKILVEEFIDGHEIECAVLGNDYPEASTVG 243 Query: 194 --VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP ++FY Y KY S V+PA +P+D+ +EV+R+A A++A+ C G++R DFL Sbjct: 244 QIVPCNEFYDYNAKYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ + + +L+ ++E A Sbjct: 304 KKSDNTIYLNEVNTIPGFTKISMYPKLWDASSLPYDKLIDRLIELA 349 >gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 308 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 162/299 (54%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL SG A L+ G +D+ + + +A +AFNV H Sbjct: 7 IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+ + G+PV IL++R T Sbjct: 67 GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D P IKP GGSSLG+ + + D ++ D++L E V G E+ Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLGVSKVGGPAEL--DAALQCAFAIEDEVLCEGAVIGHEV 184 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++ +L I P++ FY Y KY + ++ ++LP+ + + +++Q LA A Sbjct: 185 TVGILDGQALPPIVIETPRA-FYDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR R DF+ + LE+N PGMT S+ P A G F EL ++ A Sbjct: 244 LGCRDWGRVDFMI-GGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301 >gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142] gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 351 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 162/343 (47%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAH-------- 48 + +L GG S E EVS++S A A AL+ + + I + ++ V Sbjct: 8 VGLLFGGRSGEHEVSINSAAAIAQALQTGDNANKYDILPIYIQKNGVWVAGDTANEVLDS 67 Query: 49 ---------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + ++ F VLHG GEDG +Q +L L+++P+ SG+L S Sbjct: 68 KAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K + G+P V R + + + + P +KP Sbjct: 128 AVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ +++IE V+ EL C V+G+ + + I Sbjct: 188 GSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKASVIGEV 245 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + DFY YE KY+ S +PA +P I ++Q +A A + + G++R DF + Sbjct: 246 TFEGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVEE 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S++P++ G +F +L+ +V+ A Sbjct: 306 TEEIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348 >gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] Length = 364 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + Q + P +K Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDDPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 306 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 113/296 (38%), Positives = 169/296 (57%), Gaps = 5/296 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+SSERE+S+ SGKA + + V IDV+RS+ + K D+A+ LHG Sbjct: 15 IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L IPYT SGI ASA S+DK SK++ + ++ +F Sbjct: 75 PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGT-V 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP+ GS++G+ ++K+ + + + +GD+ LIEQ+++G E+T G Sbjct: 134 PEIKKYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKEV--FKYGDEALIEQFIEGKEVTVG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI VPK FY ++ KY S H++PA I + Y+ VQ A ++ C Sbjct: 192 VLNGKALPVVEI-VPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R I R D + D R V+ E N PGMT S+ P+ + GYSF L+L + E A Sbjct: 251 RAICRVDMIVDRKDR-VWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305 >gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1] gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1] Length = 309 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTEL--VGYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE L+IPYT +G+ SA+ MDK+++KQ+ +P P +V++ + Sbjct: 68 RGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDSDLN 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS+G+ ++K + + ++++ H ++ E+++ G E T Sbjct: 128 EIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKATA--HDAIVMAEKWITGREYT 185 Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+ +L V + P+ FY Y+ KY + + +P+ + K++Q L A Sbjct: 186 IVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAFHT 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G G R D + D + LEIN PGMT S+ P+ A G F L + ++ Sbjct: 246 VGASGWGRVDAMQDEHGN-FWLLEINTVPGMTSHSLVPKAAQAIGIDFDALCVEIL 300 >gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] Length = 309 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 161/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ERE+SL SGKA AL G IDV R + L + D FNV+HG Sbjct: 14 VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG++Q L L +P T SG+LASALSMDK+R+K + G+P P + ++ Sbjct: 74 RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G+ + + ++S +G + E+++DG+E T Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQAWERAS--GYGCAVFAERWIDGVEYT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ L + + P + FY ++ KY + + + P + E+Q L A Q + Sbjct: 192 GGMLKGVPLPLIRLETPHA-FYDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R D L D S + + +E+N PGMT S+ P A AG F+EL+ ++E + Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILETS 307 >gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 367 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ + P + + NR D + L + P +K Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + S++H ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY + + ++PA I ++ +++ +A A +A+ C G++R D Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ A +G S+ +L+ ++E A Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIELA 350 >gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] Length = 321 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+ V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 364 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ + F V + +D+ L Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHL---ISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I V R +D+Q + + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + +++ ++LIEQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDLAFTFDR--KVLIEQGIKGREIECAVLGNDEPVASP 243 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY + + + V+PA I + ++ +A A QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+ L+ ++E A Sbjct: 304 FLTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIELA 350 >gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] Length = 304 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G D L L D A +LHG Sbjct: 17 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLSLDVDRALIMLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P + ++ ++ Sbjct: 77 RGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 136 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++ + +Q+L+EQY+DG Sbjct: 137 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAIQD--AFKYDNQVLLEQYIDG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + FY Y KY + + P+ + + ++ +LA A Sbjct: 195 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L ++ Sbjct: 254 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 312 Query: 295 DA 296 + Sbjct: 313 TS 314 >gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6] Length = 288 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 166/293 (56%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A A+ + G + +D++ ++ L +KPD F LHG Sbjct: 3 VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPYT SG+L S L+MDK +K++++ +PV I V R Sbjct: 63 TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H S P V+KP GSS+G+ ++K + + + S +H ++LIE+Y+ G ++T G Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI PK Y YE KY+ S +V + K++Q +A + H+ + Sbjct: 179 ILKGEALPPVEIK-PKKGIYDYESKYTKGMSDYVFLE--DEKLIKKLQDIALMVHKYLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ISR DF + LE N PGMT +S+FP M G F+E++ ++ Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMIHMLL 287 >gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] Length = 321 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + I+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] Length = 343 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 163/335 (48%), Gaps = 41/335 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + G+ ++V + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201 + + L ++ ++ ++L+E ++ E+ V+G+ VP ++FY Sbjct: 185 AHNREELEKGLSEALKFDR--KILVETALNAREIEVAVLGNDEPKAATPGEIVPANEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KYS+ S +LPA + + ++V+ LA ++ + C G+SR DFL D + +V+ E Sbjct: 243 YEAKYSNAESKLLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P+M G ++ +L+ ++E A Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGDLISEIIELA 337 >gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 301 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 121/301 (40%), Positives = 181/301 (60%), Gaps = 10/301 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVLHG 60 VLMGG S+EREVSL++GK +AL+ AG++V D+ + L KPD+ FN LHG Sbjct: 7 VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119 N+GEDG +Q L++L++PYTHSG+ AS L MDK +K++ S G+ V + R Sbjct: 67 NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + PYV+KP+ GSS+G+ +I+K + ++ + ++LIE+++DG ELTC Sbjct: 127 EGTFLKMPYVVKPVSDGSSVGVYIIRKKED-----AEAVRYEDDREILIEEFIDGKELTC 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G + VTE+ +FY Y KY++ + H+LPA+IP + + A H +G Sbjct: 182 MVLGSQAHVVTELRASD-EFYDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNILG 240 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CR +SR DF ++P V LEIN PGMT +S+ PE A Y G + L ++VE+ASC Sbjct: 241 CRSVSRCDFRYNPEDG-VVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299 Query: 300 R 300 + Sbjct: 300 K 300 >gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] Length = 358 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VS+ + A AL+ F++ I + V Sbjct: 5 VGLLYGGKSAEHKVSMQTAMAVIKALDLEKFEIHPIYISEEGQWVKGPQLQGPVSSVKEL 64 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG VQ +LELL +PY +G+ Sbjct: 65 EFSQGEALPPTALAPTLFQGAQDKGPFDVIFPLLHGPNGEDGTVQGLLELLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135 LAS+ MDK+ K + + G+P + R +++ + P +KP Sbjct: 125 LASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENETEAAYDQVERELGYPCFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIA 193 GSS+GI + ++ ++ +++IE+ V E+ GV+G+ V Sbjct: 185 GSSVGISKCMNRSELEEAFKEAFQFDR--KIIIEEGVTAREIEAGVLGNDYPECSVAGEI 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 VPK +FY Y+ KY ++ ++PA+I Y E++ +A A +A+ C G+ R+DF Sbjct: 243 VPKVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMAIKAFKALDCSGLVRADFFLT-R 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG TP S+FP + + G + +L+ +V A Sbjct: 302 EGKLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 344 >gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] Length = 304 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] Length = 377 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 160/360 (44%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + V+ GG S+E EVS S + + ++ + F VS + + + Sbjct: 7 VMVIFGGQSTEHEVSRFSATSIINNMDRSKFDVSFVGITKEGRWVPYNGPVEKIASGEWE 66 Query: 41 ---------------------------------SVGLVLAHLKPDLAFNVLHGNFGEDGL 67 + + D+ F VLHG GEDG Sbjct: 67 EIAINEMVKGIPYRDNIINAIVSRGASSEAVIKNENKEINGGPIDVVFPVLHGCNGEDGT 126 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------- 120 +Q + E+ IPY SG+L SAL MDK+ +K V GVP + R + Sbjct: 127 IQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYLFFTRKEIKENSDRVAD 186 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P IKP GSS+G+ + + L + + + ++LIE++++G E+ Sbjct: 187 AIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEAL--NFAAKYDRKVLIEEFINGREVE 244 Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 C V+G+ + + + +P ++FY Y KY +S V+PA +P D +++ A A + Sbjct: 245 CAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLPADTILKIREYAVKAFK 304 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G+SR DF + +++ EIN PG T +S++P + +G + EL+ +++ A Sbjct: 305 ALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEASGIPYSELIERLIDLA 364 >gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] Length = 321 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+++GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 370 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] Length = 366 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG SSE EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R D + P +K Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ D ++ + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEF--DHAVELAFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V +PA + D+++ ++ +A A QA+ CRG++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIELA 350 >gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 370 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3] gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 360 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+ GG S+E E+S+ S ++ A+ L+ F + I + S + Sbjct: 6 VALFFGGQSAEHEISIISAQSIAAHLDTERFTLLPIYITHSGEWLCDGFARTLLTTNLAS 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 LA L D+AF LHG+FGEDG +Q LE Sbjct: 66 KLRGSSREETAAALQQMVRNAAQAPCNRNLAALGVDVAFLALHGSFGEDGRMQGFLETCG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127 IPYT G+LASAL+MDK +K V+ G+ V + N + +S P Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + + L + + ++++E V G E+ V+G+A Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAACAL--DWKVVVESTVKGREIEVAVLGNADP 243 Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + P +FY ++ KY ++ +PA+IP + +EV+R A A++A+GC G++R Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D + V E+N PG T +S++P+M +G S+R L+ ++E A Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLELA 354 >gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 379 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L + D FNVLHG Sbjct: 85 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELR--QYDRVFNVLHG 142 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P L+ T Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +++ P +IKP+ GSS+G+ + +P + GD ++ E+++ G E T Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELPAAYATAV--QCGDVVMAERWITGREFT 260 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A +A Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G F L ++ Sbjct: 321 VDAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGMDFESLCWHIL 375 >gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98] Length = 362 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG VQ +LEL+ IPY Sbjct: 66 QMSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LASA MDK+ K + + G+ R + + + P +KP Sbjct: 126 NGVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 ANLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDDPKCSVV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK +FY Y+ KY ++ ++PA+I + +QR A A QA+ G++R+DF Sbjct: 244 GEIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G S+ EL+ ++ A Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELIEELIRLA 348 >gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 318 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVS++SG+ L+D G D L AFNVLHG Sbjct: 12 VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + P +KP GSS+ +I +K + + ++ + +L+E+ ++ Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAIAHAAKF--DTIVLVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y+ KY S + +++P + +Q LA Sbjct: 190 GGEYTACIAGDLDLPVILI-VPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + +GCR R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFEVLGCRDWGRADFMLDGEGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYEELIMTVL 307 >gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 364 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] Length = 313 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307 >gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 366 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG SSE EVSL S K A++ F V + +D+ Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65 Query: 45 ---------VLAHLK------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 LA + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEAQYQQAVALAFEFDH--KVVVEQGIIGREIECAVLGNDEPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA I I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ +G +R L+ +++ A Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLIDLA 350 >gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 364 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 137/300 (45%), Positives = 201/300 (67%), Gaps = 3/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA L AG++V++++V + L ++P + FN LHG Sbjct: 5 VAVLMGGTSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV SI+V+ + Sbjct: 65 TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +++ ++ P L + + + ++ E+YV G ELTC Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEA-PPQLAANEAESAD--VMAERYVPGRELTCA 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G +L + EI +Y + KY S H+ PA +P DI +++ R + +AH+AIGC Sbjct: 182 VLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG++RSDF DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F L+ W++EDAS R Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVSWIIEDASLRR 301 >gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115] gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115] Length = 339 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 39/337 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + +L GG S E EVSL S ++ +AL F V+ + + + Sbjct: 5 ILLLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAP 64 Query: 42 ------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 + V + D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ Sbjct: 65 GGGDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKD 147 +KQV++S G+ L R SQ + P +KP GSS+GI + Sbjct: 125 TKQVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHT 184 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203 + L +++ ++++E E+ G++G+ + + + S+FY YE Sbjct: 185 DDLQAALDL--AFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSFDSEFYDYE 242 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + +PA++P D+ + V+ +A A +A+ C G++R DF + + ++F E+N Sbjct: 243 TKYTEGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEVN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG T S++P++ AG + EL+ +V A R Sbjct: 303 TMPGFTTTSMYPKLFEAAGIGYSELVTRLVTLALEER 339 >gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] Length = 321 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318 >gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] Length = 328 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ERE+SL SG A +ALEDAG IDV +V + D AF +LHG Sbjct: 19 VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------SSCGVPVCPSILVN 114 GEDG +QA+LE L IPYT S + +SAL+MDK+R+K + S+ +P ++ Sbjct: 79 PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138 Query: 115 RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 R + L + ++KP GSS+G+ +K + + ++++ ++ +L E+ + Sbjct: 139 RESDFVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKAT--DYQGSVLAERLI 196 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ +L + S FY + KY + ++ ++ P + + +E+++LA Sbjct: 197 VGAEYTVAILDGEALPPIRLETDHS-FYDFNAKYIAEDTRYICPCGLSAEKEQELKQLAL 255 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +GCRG R D + D + LE+N PGMT S+ P A G SF EL++ + Sbjct: 256 TAFNVLGCRGWGRVDVMADAQQN-FYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTI 314 Query: 293 VEDA 296 + + Sbjct: 315 LRAS 318 >gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] Length = 300 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG++QA+LE ++IPY+ G L S + MDK +K+++ S G+ + V Sbjct: 63 KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+ +IKK Q I + + ++ +++IE+Y+ G E+ Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAVRLAL--DYDTEVMIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC +M L + I PK++F+ Y KY+ S ++ + + +++ +A + Sbjct: 181 TCCIMNGKVLPIIAIK-PKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A S+ +LL + E Sbjct: 239 LKCSVYVRVDMIIKE--GVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293 >gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] Length = 321 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 364 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S FY+Y+ KY N + V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42] gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42] Length = 354 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 53/342 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46 GG S+E VSL + A AL F + I + Sbjct: 2 YGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQLEQ 61 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F +LHG GEDG +Q +LELL +PY +G+L Sbjct: 62 NGESFALSALNREMFPEASPDEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVL 121 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P + + + P +KP G Sbjct: 122 ASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLG 181 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+GI + + + ++ + ++++E+ + G E+ GV+G+ + + Sbjct: 182 SSVGISKCRNREELEKAF--ELAFEYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA 239 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA++ + Y E+ +A A +AI G+ R+DF Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLTN-D 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 299 GQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 340 >gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] Length = 342 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+ER+VSL SG+A SAL AG +DV + + + D F LHG Sbjct: 34 VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IP+T S ++ASAL+MDK+R+K V + CG+ + + Sbjct: 94 RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGLATPKFRTMASAEDAN 153 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP + GSS+GI + + +++ +L+E++++G E T Sbjct: 154 SIAAELRMPLSVKPSREGSSIGICKVTSAGELVQAWQAAAAL--DTSVLVEEWIEGPEFT 211 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L ++ FY Y+ KY + ++ + +P + D +Q+LA A + + Sbjct: 212 VSLLQDRALPAIGLSTDHV-FYDYDAKYLADDTRYCIPCGLSADEELRLQQLALEAFRVV 270 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCR R D + D K + LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 271 GCRTWGRVDIMQDA-DGKFWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRILAD 326 >gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166] Length = 314 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P ++KP GSS+G+ + + +S+ + Q+L+EQ++ G E T Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASA--YDAQVLVEQWIHGPEFT 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + FY Y+ KY + ++ + +P + +E++ L+ A +A+ Sbjct: 194 VAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEAV 252 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG +R D + D + LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16] gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16] Length = 368 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V+ I +D+ + Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q + L + Sbjct: 66 LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V + R ++ + P IK Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + ++ S++H ++LIE + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAFSYDH--KVLIEAAIKGREIECAVLGNDYPKAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P+ FYSY+ KY + +PA +P D+ + +Q +A A++ + C G++R D Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V E+N PG T +S++P++ +G S+++L+ ++E A Sbjct: 304 FLTE-TGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIELA 350 >gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 138/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA L AG++V++++V + L ++P + FN LHG Sbjct: 5 VAVLMGGTSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV SI+V+ + Sbjct: 65 TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +++ ++ P L + + + ++ E+YV G ELTC Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEA-PPQLATNEAESAD--VMAERYVPGRELTCA 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G +L + EI +Y + KY S H+ PA +P DI +++ R + +AH+AIGC Sbjct: 182 VLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG++RSDF DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ W+VEDAS R Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVSWIVEDASLRR 301 >gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 364 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 361 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E E+S+ S ++ A + ++V I + R+ Sbjct: 6 VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65 Query: 45 ------------VLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L + D+AF +LHG++GEDG +Q L+ + IP Sbjct: 66 LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 YT G+ ASAL+MDK SK VS G+ V P + V + + P Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + +P L + N ++LIEQ + G E+ V+G+ Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEALAHAC--NLDTKVLIEQAMHGKEIEVAVLGNNDPIA 243 Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + P SDFY Y+ KY + +PA++P ++ + VQ A A++A+GCRG++R D Sbjct: 244 SACGEIEPGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F D S +V + EIN PG T +S++P++ AG +F EL +++ A Sbjct: 304 FFVDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPELCDRLLQLA 352 >gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103] gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103] Length = 365 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S K A++ F+V + +D+ L Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + M++ + P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L ++ +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S H V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ AG S+++L+ ++E A Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350 >gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] Length = 355 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 161/339 (47%), Gaps = 47/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+SS +A A AL + +++ + ++ + + Sbjct: 6 VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKNGCWLAGEIPQQVLET 65 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F +LHG GEDG +Q +L L+++P+ SG+L SAL Sbjct: 66 GTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAL 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGGS 137 MDK+ K G+P + R + + + + P +KP GS Sbjct: 126 GMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195 S+GI ++ Q + L ++ + ++++E V E+ C V+G+ + + Sbjct: 186 SVGIAKVRSRQELEAALDNAA--TYDRRIIVEAGVVAREVECAVLGNDQTKASIVGEITF 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ + ++PA IP + +++Q +A A A+ G++R DF F + Sbjct: 244 NSDFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEATG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ EIN PG T S++P++ A +G F EL+ +++ Sbjct: 304 EILINEINTFPGFTATSMYPQLWAESGIPFPELVDRLIQ 342 >gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] Length = 319 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 146/304 (48%), Positives = 202/304 (66%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG CA ALE G KV++ID + VL KPDL FN LHG Sbjct: 11 IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 71 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++K+ + P + + + SW G+++++E Y+ G+EL Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190 Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 VMG+ +L VT+I + FY YE KYS S HVLPA IP + R+A LAH Sbjct: 191 VMGEANGPRALAVTDIR-ASTGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHT 249 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCR ++RSD +D ++ + LE+N QPGMTP S+ PE AA+ G F +L+LW+VEDA Sbjct: 250 ALGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDA 309 Query: 297 SCLR 300 R Sbjct: 310 YARR 313 >gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 364 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355] Length = 365 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S K A++ F+V + +D+ L Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + M++ + P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L ++ +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S H V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ AG S+++L+ ++E A Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350 >gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris] Length = 357 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 157/340 (46%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDR- 40 + +L GG S+E VSL + KA AL+ F + I DV Sbjct: 5 LCLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKEL 64 Query: 41 ---------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 S+ D+ F +LHG GEDG VQ +LELL +PY +G+L Sbjct: 65 QFNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P R T + + I P +KP G Sbjct: 125 ASSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194 SS+GI + ++ ++ +++IE+ V E+ GV+G+ V V Sbjct: 185 SSVGISKCSSRDELAKAFQEAFQFDR--KIIIEEGVKAREIEIGVLGNDQPQCSVPGEIV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA++ D+ +++ +A + +A+ C G+ R+DF Sbjct: 243 PKTDFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTE-D 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ E+N PG TP S+FP + + G + L+ +V+ Sbjct: 302 GRIYMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVD 341 >gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824] gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824] gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018] Length = 343 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 164/336 (48%), Gaps = 41/336 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A+L GG S+E EVS S + ++ + + + I + + Sbjct: 5 VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64 Query: 41 --------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + +L + + D+ F V+HG +GEDG +Q + +L+ +P +L+S++ MD Sbjct: 65 KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + ++V+ + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYS 201 + + L + + ++L+E+ ++ E+ V+G+ + VP +FY Sbjct: 185 AHNRKELEAGL--EEAMKYDRKILVEEALNAREIEVAVLGNEEPKAAIPGEIVPAKEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY + S ++PA + + ++++ +A ++A+ C G+SR DFL D + +++ E Sbjct: 243 YEAKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +N PG T +S++P++ A AG + +L+ ++E A+ Sbjct: 303 VNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338 >gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] Length = 299 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 159/299 (53%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSEREVSL+SG + + ++V + +D+ ++ D A LHG Sbjct: 3 VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA+LE L IPY+ L+S+L MDK +K ++ + G+ + V Sbjct: 63 KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P IKP GGSS+ I K + + + + W ++++IE+++ G E+ Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKW--DNEVMIEEFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + V I K+DFY YE KYS+ + H + DI+ EV+++A ++A Sbjct: 181 TCPVFENEMFPVLAIK-AKTDFYDYEQKYSANGAEH-YAINLEKDIHSEVEKMALDTYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ E + ++E + Sbjct: 239 LKCSVYARIDMIITE-EGVPYVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIEHS 296 >gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 303 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG SSEREVSL SG +A+E G + +D +L K D F LHG Sbjct: 3 IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLDPRYIDLSMLGFYKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118 GE G VQ++L++L+IPY SG+LASA+S++K+++K++ + G+ P +LV + + Sbjct: 63 GMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQV 122 Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D L ++ P V+KPL G S+G+ + + LL +++ + ++L+EQ++ G Sbjct: 123 DIMALCSELTFPVVVKPLNQGCSIGVAKADNEVQLWDALL--AAFEYDTEVLVEQFIVGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ +L V +I +F+ + K+ + ++T+ P+ + + +Q A+ Sbjct: 181 EYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GCRG R D L V+ +E+N PGMT S+FP AA G S+ L+ +++ Sbjct: 239 QALGCRGWGRIDVLLTEH-NDVYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLDH 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC 12472] gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 366 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S + A++ F+VS I VD+ + Sbjct: 6 VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+AF ++HG GEDG +Q +L + I Sbjct: 66 RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ +G+L SA+ MDK +K+++ G+ V P + + R L + P +K Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K++ + L + ++ + ++L+EQ V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKREADLRAALDE--AFRYDHKVLVEQAVIGREIECAVLGNERPRASG 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY + + V +PA IP + + ++ +A A QA+ C G++R D Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V E+N PG T +S++P++ AG S+REL+ ++E A Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIELA 350 >gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] Length = 314 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 166/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P ++ Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P ++KP GSS+G+ + + +S+ + Q+L+EQ++ G E T Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASA--YDAQVLVEQWIQGPEFT 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + FY Y+ KY + ++ + +P + + ++ L+ A +A+ Sbjct: 194 VAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEAV 252 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG +R D + D + LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] Length = 364 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 321 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY++ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM +SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] Length = 365 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ L Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V R +D++ +I P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + S++ ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAFSFDR--KVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S + + V+PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+++L+ +++ A Sbjct: 304 FLTN-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLIDLA 350 >gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5] gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 364 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ L Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKQGHWHLNDTSNFLINQENPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I + R T ++ + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARETLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVDNEAEYEAAVELALGFDH--KVLVESAVRGREIECAVLGNDQPIASG 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V + FYSY+ KY + V +PA I ++ + ++ LA A Q +GC G++R D Sbjct: 244 CGEIVVSNGFYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLGCSGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ G S+ EL+ ++E A Sbjct: 304 FLT-DEGEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIELA 350 >gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] Length = 345 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56 + V+MGG S ER+VSL SG A A ALE G+ V +I + + L + D AF Sbjct: 10 VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 LHG GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++ VP P V Sbjct: 70 ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129 Query: 114 -NRFTMDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D+ H P ++KP GSSLG+ + + L ++ D ++E++ Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVTKAGSLEELKSALAL--AFEFDDAAIVERF 187 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G E+ G++ L EI VPK Y YE KY+ + + +PA++P Y+ V LA Sbjct: 188 VAGTEVNVGILDGKVLGAIEI-VPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVLNLA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A QA+GC G R D L + + LE+N PGMT S+ P++A AGY F +L Sbjct: 247 ERAAQALGCTGAVRVDLLVTGGENE-YVLEVNTLPGMTQTSLLPKIAEAAGYEFGDLCEA 305 Query: 292 MVEDA 296 ++ A Sbjct: 306 ILASA 310 >gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] Length = 312 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 167/307 (54%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV++GG S+E VS +SGK A+AL G+ + V L + D+ FN LH Sbjct: 9 IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITELVPEEWARTLKEGQFDIVFNALH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------V 113 G +GEDG++Q E++ IPYT G++ASA+ M+K+ SK G+ P V Sbjct: 69 GRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPFRYYFEEQGV 128 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + + S P VIK GSS+G ++++K + L S ++ +G ++ E ++ Sbjct: 129 DSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSAL--SEAFAYGKSIVAEAFLS 186 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM + + V EI + K+ Y YE KY+ S H+ PA+IP ++ KE+Q L+ Sbjct: 187 GREFTVAVMDELAFPVIEI-ISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQDLSLA 245 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C+G++R D + D + K + LEIN PGMT S+ P+ + G F +L ++ Sbjct: 246 VFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDLCERIL 304 Query: 294 EDASCLR 300 E+AS + Sbjct: 305 EEASTGK 311 >gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] Length = 271 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 122/276 (44%), Positives = 169/276 (61%), Gaps = 8/276 (2%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D GF+V ++D + L +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+LA Sbjct: 2 RDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL+MDK +SK V G+PV S+L R + ++H+++PPYV+KP GSS+G+ ++ + Sbjct: 62 SALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVHE 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + P L + + +++E Y G ELT V+GD +L VT+I +Y Y KY Sbjct: 122 AANAPPQLSD----DMPETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAKY 175 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S S H PA +P +I + A AH A+GCRG+SR+DF +D + LE N Sbjct: 176 SVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDEARGVDGLIVLETNT 235 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE AA G SF +L W+VEDASC R Sbjct: 236 QPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271 >gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 364 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454] gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica HKI 454] Length = 315 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSER+VSL SG+ L DAG D L AF LHG Sbjct: 14 VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT G+L SAL MDK R+K + G+P P V R Sbjct: 74 GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + P +KP GSS+ + +K ++P L Q++ H +L+E+ +D Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHALAQAA--RHDPVVLVEKSIDG 191 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + G L + I VP +FY Y KY + ++ +++P + + + LA Sbjct: 192 GGEYTACIAGSLPLPLIRI-VPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARR 250 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + + C R+DF+ D ++LE+N PGMT S+ P+ A G S+ ELL+ ++ Sbjct: 251 AFEVLACTAWGRADFMLD-SDGNPYFLEVNTSPGMTDHSLPPKAARAVGISYSELLVNVL 309 >gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] Length = 361 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWQRGARLTEPVSNVKML 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F +LHG GEDG +Q +LELL IPY Sbjct: 65 QLEQNGSSFSPAALNKEMFPGDSSKENEAIDVVFPLLHGPNGEDGTIQGLLELLNIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ + + + P +KP Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLSQAKYAAFLKKDWSRSSEECCEQVEKELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + ++ + ++++E+ V G E+ GV+G+ V Sbjct: 185 ANLGSSVGISKCRSREELEKAF--ELAFQYDRKVVVEEGVIGREIEIGVLGNDEPKCSVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK+DFY Y+ KY ++ ++PA++ D Y ++ +A A +AI G+ R+DF Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLIIPAEVTDDQYAKISDMAIKAFKAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +V+ A Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGIEYADLIEQLVDLA 347 >gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] Length = 359 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 163/341 (47%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E +VSL + KA +AL+ ++V I + + + Sbjct: 5 LGLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLL 64 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG +Q +LE+L+IPY +G Sbjct: 65 KFEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ + R + + ++ P +KP Sbjct: 125 VLASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPAN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEI 192 GSS+GI Q + +++++ ++++E+ +DG E+ V+G+ + V Sbjct: 185 LGSSVGISKASNRQELVQAF--QTAFDYDRKVIVEEGIDGREVEIAVLGNDEPECSVVGE 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK+DFY Y+ KY ++ ++PA+I + Y+ ++ +A + +A+ C G+ R+DF Sbjct: 243 IVPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFLTK 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG TPVS+FP + +G S+ L+ M+ Sbjct: 303 -DSTILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMI 342 >gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 363 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEADFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355 >gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR] gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR] Length = 309 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 155/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+ER+VSL SG A L G D L K D F LHG Sbjct: 9 VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L++LE+PYT S +L AL MDK+R KQ+ S G+P +V + ++ Sbjct: 69 RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + +S+ L L ++ + D LL+EQ+V+G Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALALQHAAEF--DDDLLVEQWVEG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T G++ +L V + P +FY +E KY + ++ + PA + D ++ LA A Sbjct: 187 AEYTIGILEGKALPVIRLQTPH-EFYDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AIG G R D + + + F LE N PGMT S+ P A AG F +L+ ++ Sbjct: 246 FAAIGGSGWGRIDVMRNNA-GEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLVERIL 303 >gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] Length = 303 Score = 318 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 136/299 (45%), Positives = 197/299 (65%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 +AVL GGIS+EREVSLS+G +AL AGF+V+ ++V + ++A L KPD FN Sbjct: 4 VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK +K V ++ G+P+ +V Sbjct: 64 LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYV+KP+ GSS+G+ ++K+ + ++ ++ W G Q++ E+Y+ G EL Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEIARN--WRFGPQIMAEEYIAGREL 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD L VTEI FY Y+ KY++ S H +PA+IP D+ + + A AHQA Sbjct: 182 TVAVMGDRPLAVTEIGTGHV-FYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG+SRSDF +D + K+ LE+N QPG+TP S+ PE AA+ G SF EL WMV +A Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299 >gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] Length = 321 Score = 318 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] Length = 364 Score = 318 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F+V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + ++R D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAQYAQAVALAFEFDH--KVVVEQGIVGREIECAVLGNDRPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIELA 350 >gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] Length = 320 Score = 318 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 24 IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S + + SI+V++ + Sbjct: 84 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI ++ + +GDQ++IE+Y+ G E Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYDFPYGDQVVIERYIKGREFQVA 200 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA + ++Y+++ + ++ + C Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317 >gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] Length = 339 Score = 318 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 163/337 (48%), Gaps = 39/337 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + +L GG S E EVSL S ++ +AL F V+ + + Sbjct: 5 ILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAV 64 Query: 39 ---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 D + + D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ Sbjct: 65 RGGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKD 147 +KQV++S G+P L R + P +KP GSS+GI + Sbjct: 125 TKQVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGP 184 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203 + L +++ G ++++E EL G++G+ + + + ++DFY YE Sbjct: 185 GELERALDL--AFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFYDYE 242 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ +T +PA +P +I + V+ LA A + + C G++R DF + + ++F E+N Sbjct: 243 TKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVN 302 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG T S++P++ AG S+ EL+ +VE A R Sbjct: 303 TMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339 >gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] Length = 378 Score = 318 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 164/363 (45%), Gaps = 70/363 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE E+S S+ +A++ + V + Sbjct: 11 IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70 Query: 37 -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68 D D V+ D+ F +LHG +GEDG + Sbjct: 71 SVTAGSTRVALTPGEGNLVELTYEGDPDSPDSRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121 Q + E+ + Y G+ +SA+SMDK +K V+++ G+ V LV D+ Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGQWELVTARQWDADSTACMDR 190 Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P+ + +++ NH ++++E + G E+ CG Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASISGREVECG 248 Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G + + EI VP+ +FY YE KY PA + + ++ A+ A Sbjct: 249 VLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVVGLSCPADVAPEYADRIRETAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D S V E+N PG TP+S++P+M A AG S+ +LL ++ Sbjct: 309 FDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPISMYPQMWAAAGLSYPDLLTELLT 368 Query: 295 DAS 297 +A+ Sbjct: 369 EAA 371 >gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] Length = 377 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 157/355 (44%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S E EVSL + A + + ++V + A + Sbjct: 7 VGLIYGGKSGEHEVSLRTALAVMGEFDFSRYEVKPFYITTDGQWRTADVLLAPPADVAAL 66 Query: 50 -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72 D+ F +LHG FGEDG +Q +L Sbjct: 67 RLGGAEQADAAAIGSGGALAPVFQGLQAGSASHGGNGAVDVIFPLLHGTFGEDGTIQGLL 126 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------- 123 E+ IPY +G+LASA+ MDK+ K+V + G+P C NR D + Sbjct: 127 EMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRYFNRTQWDKETDYYVTEIEVS 186 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P IKP GSS+GI K + + + + ++ + ++++E++VD E+ V+G Sbjct: 187 LGYPCFIKPANLGSSVGISKAKNREELIEAI--NYAFRYDRKVIVEEFVDAREIEVSVLG 244 Query: 184 DASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + P +DFY Y+ KY S +PA IP + V+ +A A+QAI Sbjct: 245 NDEPKASVPGEIRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEAVREMAIRAYQAIDGS 304 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+SR DF ++F E+N PG TP S++P M G +RELL ++E A Sbjct: 305 GLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQETGLPYRELLDTLIELA 359 >gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 361 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51 + GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 2 IFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALIS 61 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F ++HG GEDG +Q +L ++ IP+ Sbjct: 62 LNHSNKNVALIPGQQRQQLIAADNGSALAQLDVIFPIVHGTLGEDGSLQGLLRMVNIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLK 134 +G++ SA+SMDK +K+++ G+ V P I + R + + P IKP Sbjct: 122 GAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+G+ ++ + + + ++H ++L+E + G EL C V+G+ + Sbjct: 182 QGSSVGVSKVRNEDEYHQAIALAFDFDH--KVLVESAIVGRELECAVLGNDDPQASVCGE 239 Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +FYSYE KY + + V+PA I ++ +A A +A+ C G++R D Sbjct: 240 VVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P +V E+N PG T +S++P++ G S+ +L+ ++E A Sbjct: 300 P-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIELALAR 346 >gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6] Length = 364 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 373 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S E EVSL + A +++ + + ++ + + Sbjct: 7 IGLIYGGKSGEHEVSLQTAFAVLQSIDFSKYDITPFYITKKGDWKSGPALTAPVSSKEML 66 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 D+ +LHG FGEDG +Q + E+ Sbjct: 67 MFGDREPAALDVFGGLQKREVVISSAIESQPETSVDVVLPLLHGTFGEDGTIQGLFEMAN 126 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127 IPY +G+LASA+ MDK+ K+V + +P C R I P Sbjct: 127 IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 186 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 IKP GSS+GI + + + ++ + +++IE++V+ E+ V+G+ Sbjct: 187 CFIKPANLGSSVGISKARNRDELIKAV--EEAFKYDRKVIIEEFVEAREIEVAVLGNEEP 244 Query: 188 DVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +V+ I+ SDFY Y+ KY NS V+PA IP + ++Q LA A +AI G+ Sbjct: 245 EVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQELAIRAFKAIDGSGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF + EIN PG TP S++P + +G + +LL +++ A Sbjct: 305 SRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLWKESGKPYAQLLDELIDLA 357 >gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] Length = 375 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 57/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S E EVSL S + A++ + V I +++ + Sbjct: 7 VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66 Query: 46 ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 K D+ F VLHG FGEDG +Q + EL ++ Y SG+L S Sbjct: 67 QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138 A MDK K++ ++ +P+ + + R + + + P +KP GSS Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193 +GI + +P + +++ ++ +++IEQ V G EL V+G+ + + + + Sbjct: 187 VGISKVHDRSELPKAMDEAARFDR--KIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244 Query: 194 --VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FY Y KY + +++ +PAKI K+++ +A A +A C G++R DFL Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304 Query: 251 DPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DP S K++ EIN PG T +S++P++ G S+REL+ ++ Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELIDRLI 352 >gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] Length = 312 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 167/306 (54%), Gaps = 9/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+E+E+SL SGKA +AL + G ID + + D +N LHG Sbjct: 9 VVVLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114 GEDG++QA L+LL +PYT SG++ASA++MDK+R+K + + PV ++N Sbjct: 69 RGGEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTI 128 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D ++ ++KP++ GSS+G+ +++ + + + ++++EQ++DG Sbjct: 129 EQAEDVLADMNDCVMVKPIREGSSVGMAKADNAKALVEAVENAK--QYDREVMLEQWIDG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L + P + FY ++ KY S ++ +V P+ + + E+ L+ A Sbjct: 187 EEYTVSILNGKALPSIRVKTPNT-FYDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G R D + + + LE+N PGMT S+ P+ A +G SF EL++ ++E Sbjct: 246 FYALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305 Query: 295 DASCLR 300 + R Sbjct: 306 TSFVER 311 >gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] Length = 364 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + ++ GG S+E EVSL S K A++ F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65 Query: 48 --HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQYDQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] Length = 311 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 185/306 (60%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++L + + +AL+ G+ +I +D +V + K D+A HG Sbjct: 3 VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL IPY SG+LASAL++DKM +K++ + +P +++ +++ Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L + P++IKP GS++G+ ++ +++ + + ++ + + +++E+Y Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEEELLKGI--ELAFQYDENIIVEEY 180 Query: 172 VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + GIE+T G+ L + EI +PK+ FY Y+ KY+ S H++PA++P ++Y++ Q Sbjct: 181 IKGIEITAGIYDVNKPICLPLIEI-IPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEKAQ 239 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F +L Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFPDL 299 Query: 289 LLWMVE 294 + ++ Sbjct: 300 IDNFIK 305 >gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 361 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + V Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVKGARLTEPVSNVKML 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F +LHG GEDG +Q +LELL IPY Sbjct: 65 QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ + + + P +KP Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPEESCEQVEQELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + ++ + ++++E+ ++G E+ GV+G+ V Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK+DFY Y+ KY ++ ++PA + + Y ++ +A A +AI G+ R+DF Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAHVTDEEYAKISEMAIKAFKAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026] gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412] gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026] gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412] gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] Length = 364 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] Length = 364 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v] Length = 364 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I ++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] Length = 360 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A++ GG S+E E+S+ S K+ A+ + +KV + + Sbjct: 6 VALIFGGRSTEHEISIISAKSIAANISAERYKVIPLYITHQGTWLCEGIARDILNLDLSA 65 Query: 40 -----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + L + ++AF LHG +GEDG +Q L+ Sbjct: 66 LLRNSSPEAAAMALDRMVEEAEQKPFNLDFRAIGIEVAFLTLHGTYGEDGRIQGFLDTCN 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 IPYT G+LASAL+MDK +K V+ G+ V PSI + + + P Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEKFIYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 + +KP GSS+GI + + +P L + S ++++E+ + G E+ V+G+ Sbjct: 186 FFVKPANLGSSIGISKVHHREQLPAALKSACSL--DSKIVVEKAITGREIEVAVLGNDEP 243 Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +V+ P SDFY Y KY ++ +PA+IP ++ EV+ +A A++A+GCRG+SR Sbjct: 244 EVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D + E+N PG T +S+FP + A +G+SF EL +++ A Sbjct: 304 IDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPELAERLLQLA 354 >gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] Length = 312 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 154/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATDIVTKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 306 >gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 365 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ L Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V R +D + +I P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + S++ ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAFSFDR--KVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S + V+PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+R+L+ +++ A Sbjct: 304 FLTDA-GEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLIDLA 350 >gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 364 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSLS+ A +A + +++ + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEIVPFYISKQGTWRIGSKMSAPFARQEEL 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR + + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLKNIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193 GSS+GI K + + + + + D++++E++VD E+ V+G+ V Sbjct: 188 GSSVGISKAKNREQLKAAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346 >gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] Length = 373 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVSL S + + A + I + +S L + Sbjct: 3 IAVIYGGKSGEHEVSLVSAASIVRNINTAKHDIILIGIAKSGKWFLQNETECERVRADAH 62 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L D+ F+VLHG +GEDG +Q +L++ IP Sbjct: 63 AALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGTIQGLLDMTGIP 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------------DSQHLIS 125 YT +SAL+MDK ++KQ+ +PV P + + + ++ Sbjct: 123 YTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQKLMRQAETEFG 182 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+G + K+ + + ++ W D++LIE +D E+ C V G++ Sbjct: 183 YPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRW--DDKILIEPAIDAREIECSVTGNS 240 Query: 186 -------SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237 + EI P FY Y+ KY+ N + PA + + V++ A A++ Sbjct: 241 VSGGEVTAYTPGEIK-PSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDVVRKTAVKAYET 299 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C G+SR DF D + ++ EIN PG T +S+FP+M AG S+ +L+ ++ Sbjct: 300 LDCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYADLVELII 355 >gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] Length = 313 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 153/299 (51%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ER++SL SG A +AL G +D+ R +A D F LHG Sbjct: 12 VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L++ +PYT +G+L SAL MDK+ K++ + +P P L+ Sbjct: 72 ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP +GGSSLGI + + +P ++ Q+ EQ++ G E T Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPAAF--EAARVQPGQVFAEQWITGREFT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237 V+G+ L V EI S FY Y KY + ++ ++ P + E+Q LA A A Sbjct: 190 VAVLGNEPLPVIEIRAA-SGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAA 248 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G R D + + F +E+N PGMT S+ P+ AA AG F EL L +++ + Sbjct: 249 LEGCGWGRVD-ILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSS 306 >gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82] Length = 364 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 301 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 172/299 (57%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG VQ++L+ LEIPY+ G L+S++ MDK SK ++ + + P I + R Sbjct: 63 QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I + ++ W +++IE+++ G E+ Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P ++++EV+ +A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296 >gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a] gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a] Length = 364 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] Length = 375 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + ++ GG S+E EVSL S K A++ F V + +D+ ++ Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76 Query: 48 --HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 77 HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDRPQAST 254 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY N V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 314 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 315 FLTA-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 361 >gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 361 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG S E EVSL S +A +AL+ + V I + R+ G L+ P Sbjct: 6 VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRN-GQWLSGGDPLLALEQQAD 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ VLHG FGEDG +Q + E + Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPY 128 PY G+LA+++ MDK K ++ G+P P LV R + + + P Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL- 187 +KP GSS+GI + + + +++ + ++++EQ ++ E+ ++G+ Sbjct: 185 FVKPANLGSSVGISKVSNRAELATGMAEAA--GYDRRIVVEQGINAREIEVAILGNDDPK 242 Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V +P +DFY Y KY + +PA++ ++++ +A A +AI G++R Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + ++ EIN PG T +S +P++ G + ELL +++ A Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352 >gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 370 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ S + Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDSPQAST 249 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] Length = 390 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S K A++ + F V+ I +D+ L Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88 Query: 47 -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 A +P D+ F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T + + + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ + + Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 266 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S + V+PA + + + V+ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 326 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G ++ L+ ++E A Sbjct: 327 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 373 >gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 364 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ + + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIELA 350 >gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94] gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94] gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] Length = 364 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9] Length = 364 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] Length = 364 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] Length = 366 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG SSE EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R + P IK Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAELGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + ++ + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEFEHAV--ELAFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V +PA + D+++ ++ +A A QA+ C+G++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIELA 350 >gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 369 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 170/351 (48%), Gaps = 53/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKP- 51 + V+ GG S E EVSL S ++ + L ++V+QI + +V L + Sbjct: 7 VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66 Query: 52 ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG FGEDG +Q +LE+ + Y Sbjct: 67 GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+L SA+ MDK K V+ + G+PV S+LV R ++ + L P+ KP Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL--DV 189 GSS+GI + LL+++ + ++LIE+ V D E+ V+G+ V Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAA--RYDRRILIERGVPDAREIEVSVLGNDEPIASV 244 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VP +FYSYE KY S ++PA + + + +++LA A++AI C G++R DFL Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + F EIN PG T +S++P++ +G S+ L+ ++E A + Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELALERK 355 >gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W] gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B] gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] Length = 364 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 5/296 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++ GG S ER+VSLS + +ALE G +V+ D R++ +L + D AF LH Sbjct: 3 ILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G GEDGLVQA+LE +PY SG S L+++K +K+V G+P + + Sbjct: 63 GQPGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGA 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + + P IK GGSSL + + + L + + G + +IE V+G+E+T Sbjct: 123 DWEPPFAFPAFIKSNNGGSSLALHRVSCPGELARALDE--LFTRGGEAIIEPAVEGVEVT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+GD +L I + F+ Y KY+ + + PA +P ++ +V+ A AH+A+ Sbjct: 181 CGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G RG SRSDF+ P + LE+N PGMT S+ P+ AA G SF L+ ++E Sbjct: 241 GLRGYSRSDFILTPA-GALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIE 295 >gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1] Length = 364 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 393 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933] gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai] gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301] gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T] gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A] gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS] gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739] gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5] gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11] gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str. E2348/69] gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1] gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989] gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39] gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606] gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. TW14359] gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B] gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50] gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736] gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933] gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai] gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301] gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T] gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr. W3110] gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS] gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A] gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5] gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11] gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str. E2348/69] gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989] gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1] gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39] gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. TW14359] gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017] gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042] gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407] gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)] gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1] gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1] gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431] gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905] gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101] gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. 493-89] gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H 2687] gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA 5905] gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. LSU-61] gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14] gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010] gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G] gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180] gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357] gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520] gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489] gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007] gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044] gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88] gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71] gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70] gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671] gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71] gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218] gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272] gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227] gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304] Length = 364 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] Length = 313 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYA 131 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + P +KP GSS+ +I +K ++ L ++ + +++E+ ++ Sbjct: 132 ARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPALEEAVKF--DKIVVVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + I VP +FY Y KY + ++ +++P I + +++LA Sbjct: 190 GGEYTACIAGDLDLPIIRI-VPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKKLARQ 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDGEGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYQELVVKVL 307 >gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] Length = 301 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 132/301 (43%), Positives = 192/301 (63%), Gaps = 6/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L PD FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V ++ G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ + +W HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ D +L VTEI FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 Query: 299 L 299 Sbjct: 300 R 300 >gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710] gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304] Length = 304 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 366 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNRNVALIPGQENQQLIAADNAAVLAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ S + Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVALAFDFDH--KVLVESAIVGREIECAVMGNDSPQASV 243 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + + ++PA I D ++ +A A A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIELA 350 >gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 318 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 159/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL SG+A SAL AG D S L K D +LHG Sbjct: 20 VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P + ++ Sbjct: 80 RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + ++KP + GSS+G+ + Q + ++ + D++L+EQ++ G Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGMAKVSNAQQLAA--AIQQAFEYDDKVLLEQFIQG 197 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ ++ ++ P+ DFY YE KY S + + P+ +P + + RLA A Sbjct: 198 SEYTVSLLNGEAMPSISMSTPR-DFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R DF+ D L + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 257 FDAVAGSGWGRVDFMQDML-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315 Query: 295 DA 296 A Sbjct: 316 TA 317 >gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046] gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046] Length = 364 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] Length = 360 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 39/335 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S E EVSLSS ++ +AL F+V+ + + + + Sbjct: 28 LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D+ F +LHG GEDG VQ +L L +P+ SG+L S++ MDK+ +K Sbjct: 88 GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147 Query: 98 QVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +V+ + G+P +R + P +KP GSS+G+ + Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207 Query: 150 IPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYELK 205 + L ++ H ++++E E+ G++G+ + + +DFY Y+ K Sbjct: 208 LAEAL--ELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRFDTDFYDYDTK 265 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y+ + ++PA +P + + +Q LA A+QA+ C G+SR DF + + ++ EIN Sbjct: 266 YTGGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINTM 325 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG T S++P + G S+ EL+ ++E A R Sbjct: 326 PGFTTTSMYPSLLQAHGLSYPELVTRLIELALEER 360 >gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 301 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 169/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I + + W +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P +++EV+ +A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296 >gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] Length = 366 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG SSE EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R + P +K Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + ++ + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEFERAVDL--AFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V +PA + ++++ ++ +A A Q + C+G++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIELA 350 >gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 311 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 180/306 (58%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++ + + +AL+ G+ +I +D +V + ++A HG Sbjct: 3 IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL IPY SG+LASAL++DK +K++ + +P I +++ +++ Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L + P++IKP GS++G+ + ++ + + ++ + + ++IE+Y Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGI--ELAFKYDENIIIEEY 180 Query: 172 VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T G+ L + EI +PK+ FY YE KY+ S H++PA++P ++Y++ Q Sbjct: 181 IKGKEITAGIYDINNPVCLPLIEI-IPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQ 239 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F EL Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPEL 299 Query: 289 LLWMVE 294 + ++ Sbjct: 300 IDSFIK 305 >gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60] Length = 367 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S K A++ + F V+ I +D+ L Sbjct: 6 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65 Query: 47 -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 A +P D+ F ++HG GEDG +Q +L++L + Sbjct: 66 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T + + + +K Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ + + Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 243 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S + V+PA + + + V+ A A QA+ CRG++R D Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G ++ L+ ++E A Sbjct: 304 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 350 >gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] Length = 370 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG SSE EVSL S K AL+ F+ + +D+ L Sbjct: 15 VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74 Query: 47 -------------------AHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 A L+P D+ ++HG GEDG +Q +L + + Sbjct: 75 RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R + + + P +K Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K+ L + ++H ++L+E V G E+ C V+G+A + Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELALRYDH--KVLVESAVVGREIECAVLGNAQPQASL 252 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY + + V+PA I +Q++A A+QA+ C G++R D Sbjct: 253 CGEVVVHDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVDV 312 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T +S++P++ +G + L+ ++E A Sbjct: 313 FLTA-DGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 359 >gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. 8004] Length = 373 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 11 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 71 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T + P +K Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 248 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 249 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 309 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 355 >gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ST398] Length = 356 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str. 301020] Length = 363 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 +R + E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERAEQAR 355 >gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101] gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 366 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S K A+AL +++ I + ++ Sbjct: 6 VGLLFGGCSGEHEVSIRSAKVIATALTKVQNKEKYELIPIYIQKNGLWQPSDFSQKVLNS 65 Query: 46 ---------------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73 L + P D+ F +LHG GEDG +Q +L+ Sbjct: 66 DHPSLLQLTNENNHDLNTSLTQQSSSPLWQIPPQAAQVDVWFPILHGPNGEDGTIQGLLK 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQ 121 L+++P+ SG+L SA+ MDK+ K G+P +V R + D + Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQVVTRSQIWSNSCVFPKLCDDIE 185 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP GSS+GI ++ + L ++S++ ++++E V+ EL C V Sbjct: 186 TTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAASYDR--RIIVEAGVEAKELECAV 243 Query: 182 MGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + SDFY YE KY+ + +PA++ I +++ +A A A+ Sbjct: 244 LGNDMPKASIVGEITYNSDFYDYETKYTEGKADLHIPARVSEAIATKIKEMATQAFLAVD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + ++ EIN PG T S++P + +G F EL+ +++ A Sbjct: 304 AAGLARVDFFYVEKTGEILINEINTMPGFTSSSMYPMLWEASGIPFSELVDTLIQLA 360 >gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. 8004] Length = 368 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350 >gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 363 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 +R + E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355 >gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 323 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELT 178 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGQGRELQ 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320 >gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 360 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 363 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 +R + E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355 >gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium CY_gF1DD01_14] gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15] Length = 364 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNNNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] Length = 356 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227] gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227] gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74] Length = 364 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLRLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] Length = 356 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. B100] gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris] Length = 368 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + ++H ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSYE KY + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350 >gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] Length = 360 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 158/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A + A+ ++V I + + + Sbjct: 5 LGLLYGGKSAEHKVSLQTALAVSKAINHDKYEVHPIYITETGKWIRGTQLTGPLETVAQL 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 EIQDNGTAISPVSLNTEMFALTDSKTDDQLDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPL 133 +G+LASA MDK+ KQ+ + G+P + R ++ + P +KP Sbjct: 125 NGVLASAAGMDKVVMKQLFAQAGLPQVEYVSFIRREWEADRTAAYEKVETLGYPCFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTE 191 GSS+GI + + +++ ++ ++++E G E+ GV+G+ + V Sbjct: 185 NLGSSVGISKCDNREELEAAFVEAFLFDR--KIIVEAAAVGREVEIGVLGNDEAACSVVG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +PK FY Y+ KY ++ ++PA+I + ++E+ LA A +AI G+ R+DF Sbjct: 243 EILPKKAFYDYKAKYEDGDTGLIIPAEITEEQHQEMSALAIKAFKAIDGSGLVRADFFLT 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K E+N PG TP S+FP + +AG + +L+ +V A Sbjct: 303 -SEGKFIINEVNTMPGFTPFSMFPLLWKHAGVEYPDLIEKLVSLA 346 >gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 2250] gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 363 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 +R + E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355 >gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177] Length = 393 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 364 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 313 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 106/300 (35%), Positives = 155/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL+SGK L DAG D L AFN LHG Sbjct: 12 VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDPIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V +I VP +FY Y KY + ++ +++P +P D E++R+A Sbjct: 190 GGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKRVARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDADGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 356 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315] gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315] Length = 313 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P + H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPA--ALEEAATHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073] gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89] gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536] gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1] gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88] gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073] gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89] gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536] gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1] gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88] gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82] gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034] gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972] gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146] gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG 857C] gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1] gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327] gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1] gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263] gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2] gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1] gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86] gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] Length = 364 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 378 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 70/365 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE EVS ++ +A++ + V + Sbjct: 11 IVFGGRSSEHEVSCATAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALAFRDGKGQ 70 Query: 37 -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68 D D + V+ D+ F +LHG +GEDG + Sbjct: 71 SVTAGATRVALTPGEGNLVELSYDGDPDSAASRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121 Q + E+ + Y G+ +SA+SMDK +K V+++ G+ V LV +S Sbjct: 131 QGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGIDVGRWELVTARQWESDPGACVER 190 Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P + +++ NH ++++E V G E+ CG Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEAA--NHDPRVIVEASVSGREIECG 248 Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G + + EI VP+ +FY Y+ KY PA++ + ++ A+ A Sbjct: 249 VLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVVGLSCPAEVSAAYAQRIRETAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D + V E+N PG TP+S++P+M A AG ++ +LL ++ Sbjct: 309 FDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPISMYPQMWAAAGLNYSDLLSELLT 368 Query: 295 DASCL 299 +AS Sbjct: 369 EASTR 373 >gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 301 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 171/299 (57%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG VQ++L+ L IPY+ G L+S++ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I +++ W +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY+ S + ++P +++EV+++A ++A Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296 >gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] Length = 364 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 364 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSLS+ A +A + +++ + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMVPFYISKQGTWRIGSKMSAPFARQEEL 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR + + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLKNIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193 GSS+GI K + + + + + D++++E++VD E+ V+G+ V Sbjct: 188 GSSVGISKAKNREQLKAAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346 >gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] Length = 351 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S + A+AL +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + DL F +LHG GEDG +QA+L L+++P+ SG+L SA Sbjct: 66 GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGG 136 MDK+ K + G+P + R + + + + PY +KP G Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195 SS+GI ++ Q + L ++ + ++++E V E+ C V+G+ + + I Sbjct: 186 SSVGIAKVQSRQELEAALDNAA--TYDRRIIVEAGVVAREVECAVLGNDNPKASVIGEIT 243 Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ + +PA +P +++Q A A A+ G++R DF + + Sbjct: 244 FDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEAT 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 345 >gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus N315] gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus COL] gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122] gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH9] gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH1] gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. Newman] gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu3] gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 132] gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MR1] gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122] gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH1] gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TW20] gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981] gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JKD6159] gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS03] gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS01] gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11] gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46] gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 356 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 393 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] Length = 364 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSLS+ A +A + +++ + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMIPFYISKQGTWRIGSKRSAPFSQLEDL 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGQENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR D + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193 GSS+GI K + + + + + D++++E++VD E+ V+G+ V Sbjct: 188 GSSVGISKAKNREQLKSAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D+ ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIEPDVADRLRELAINAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346 >gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] Length = 317 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AV+ GG S+EREVSL SG A L G++V ++D+ + L ++ DLAF Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVN 114 LHG GEDG VQA+LE+ PYT S LA L+MDK+ +K+ + G+P + V+ Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129 Query: 115 RFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + +S P ++KP + GS++GI + L+++ + +L+E+++D Sbjct: 130 HANADLIEEQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKAL--EYDSDILVEEFID 187 Query: 174 GIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T V+ D + + P Y YE KY + ++ ++LP + D E+Q LA Sbjct: 188 GPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLAL 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++++GC G R D + D + LE+N PGMT S+ P A Y G + L+ + Sbjct: 248 DAYRSLGCFGWGRVDVMRDQA-GVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKI 306 Query: 293 VEDA 296 ++A Sbjct: 307 AQNA 310 >gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197] gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197] gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] Length = 364 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQY--AIAADLAFEFDHKVIVEQGLKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae 642] Length = 363 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R + E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLIVLALERADQAR 355 >gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington] gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str. Wilmington] Length = 321 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 117/297 (39%), Positives = 188/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ ID+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFHF---IDYDFPYGEDIIIEQYIQGQELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI + K+ FY YE KY+ + HV PA++P ++YK++ + ++ I C Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTINC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG SF L+ +++ AS Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318 >gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] Length = 356 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGVKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 361 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 11 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 71 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 191 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 308 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 346 >gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424] gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424] Length = 352 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 169/343 (49%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A+AL + + + + + VL Sbjct: 6 VGLLFGGRSGEHEVSINSAKAIATALSASENATKYDILPVYIRKDGCWQAPDVAQQVLES 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +P D+ F +LHG GEDG +Q +L L+++PY SG+L S Sbjct: 66 AQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135 A+ MDK+ K V + G+P + ++R + + + ++ P +KP Sbjct: 126 AVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L Q++S++ ++++E V E+ C V+G+ + + + Sbjct: 186 GSSVGIAKVRSRSELEKALDQAASYDR--RIIVEAGVIAREVECAVLGNDNPKASVVGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ + ++PA +P I ++Q ++ A A+ G++R DF + Sbjct: 244 TFNSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYVEK 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T S++P++ A G SF +L+ ++E A Sbjct: 304 TGEILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIELA 346 >gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MW2] gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MSSA476] gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 356 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 363 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 171/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++ R D+ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAGALALGFEFDH--KLLIEQGIVGREVECAVLGNFEPQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA +P+D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 TEA-RQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERAEQAR 355 >gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 314 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 161/293 (54%), Gaps = 6/293 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 GG S+EREVSL SG A ++L +G D L L PD F +HG GE Sbjct: 22 YGGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGE 81 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDS-QH 122 DG +Q LELL IPYT SG+LASAL MDK R+KQ+ + G+P S+++ D+ Sbjct: 82 DGSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEGEPDWDAVIE 141 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++KP+ GS++GI +++ ++ ++S + ++ E++V G E T ++ Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAAHAEASRF--DSAIMAERFVQGEEYTVSLL 199 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD L + VP S FY YE KY S + ++LP + + + + + A +AIG RG Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R D + D R + LE+N PGMT S+ P+ AA+AG F L+L +++ Sbjct: 259 WGRVDVMRDAQGR-FWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILDT 310 >gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] Length = 313 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 173/312 (55%), Gaps = 16/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A++ GG+SSER+VSL+ GK +AL+ A ++V + D + ++ D AF LH Sbjct: 6 VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLARLVQEAPGIDTAFVNLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L+LL +PY SG+L SAL+M+K+ +K+V G+PV P +V+ Sbjct: 66 GVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSENRDA 125 Query: 120 S-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGSS+G+ ++K+ + + ++ + HG +L+E Y+ Sbjct: 126 DGSFLDAHADALGFPLVVKPACGGSSIGMSIVKQVSELAPAVDKALA--HGPDVLLEAYI 183 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ELT GV+G+ L V EI F+ YE KY+ ++ + PA +P D+ V+ Sbjct: 184 QGRELTGGVIGNDDPEPLPVVEIIPGDGYGFFDYEAKYTPGATSEICPAPVPEDLSARVR 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH A+ C+G SR+D + +F LE N PGM P S+ P A AG +F +L Sbjct: 244 DYACRAHSALFCKGYSRTDMIATDTD--LFVLETNTIPGMGPTSLLPLAAKAAGMAFGDL 301 Query: 289 LLWMVEDASCLR 300 L ++ + R Sbjct: 302 LDRLISLSLEKR 313 >gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto BEST195] gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] Length = 361 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + V Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKML 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F +LHG GEDG +Q +LELL IPY Sbjct: 65 QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ + + + P +KP Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPKESCEQVEQELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + ++ + ++++E+ ++G E+ GV+G+ V Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831] gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831] Length = 366 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ + V + +D+ + Sbjct: 5 VGIVFGGKSAEHEVSLQSAKNIVDAIDSDKYDVYLLGIDKQGNWHVNDRSHYLINEEDPK 64 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 65 LISLNKTNEGIAVIPGAEKNQIVTSNSTKSLDQLDVIFPIVHGTLGEDGSLQGMLRMANI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V +S + + P IK Sbjct: 125 PFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGYAYRSVDKESIHFDSLKEELGLPMFIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189 P GSS+G+ ++ ++ + + ++H +LL+E+ + G E+ C V+G+ + V Sbjct: 185 PANQGSSVGVHKVENEEQFYSAIKDAFQFDH--KLLVEEAIVGREIECAVLGNEKPAASV 242 Query: 190 TEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P DFYSYE KY + +PAK+ + +Q +A A +A+ C G++R D Sbjct: 243 PGEILPTGDFYSYEAKYIDETGAVLQIPAKLEEPVVDSIQDIALQAFKALNCEGLARVDV 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S++P++ +G S+REL+ ++E A Sbjct: 303 FLT-DDNEIVINEINTLPGFTKISMYPKLWEESGVSYRELIENLIELA 349 >gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2] Length = 322 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 155/302 (51%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A +AL D L K D +LHG Sbjct: 18 VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+LL+IPYT + +L SAL+MDK+ +KQV S G+P + ++ ++ Sbjct: 78 RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++N+ +Q+L+EQY+ G Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQLENAIQD--AFNYDNQVLLEQYIKG 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + FY Y KY + + P+ + + + +L+ A Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +I G R D + D + LE N PGMT S+ P+ A AG SF EL+L ++ Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVLAILA 313 Query: 295 DA 296 + Sbjct: 314 TS 315 >gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266] gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 171/351 (48%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLVLAH 48 +A++ GG S+E E+S+ S K+ A+ ++ F+V + + + L LA Sbjct: 6 VALIFGGKSTEHEISIISAKSIAAVIDPFRFQVLPLYITHEGKWFTGEFAENILQLDLAE 65 Query: 49 L--------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 + DLAF LHG++GEDG +Q +L+ Sbjct: 66 MLRSTSLDATGNTLRQMAMHTGQQGFDFDFFKAGIDLAFIALHGSYGEDGRIQGLLDTFG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 IPYT G+LASA++MDK +K V+ G+ P I + + + + P Sbjct: 126 IPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGITILSSEYFADPKSTQKSIEEQFTWP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + L ++ + ++L+E+ + G E+ V+G+ + Sbjct: 186 VFVKPASLGSSVGISKVHHIGELIAAL--ETACRYDSKILVEKAMQGREVEVAVLGNNAP 243 Query: 188 DV--TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +V T P S+FY Y KY + +PA+I ++ ++V++ A A++A+GCRG+SR Sbjct: 244 EVSITGEIEPGSEFYDYADKYIHNAAKMYIPARISPELQEQVRKDALRAYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D S + E+N PG T +S++P + A +G F EL+ +++ A Sbjct: 304 IDFFVDETSGTIVLNEVNTIPGFTDISMYPRLFAASGLPFNELVEKLLQFA 354 >gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 366 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350 >gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2] gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2] Length = 362 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S E EVSL + A +A +++ + ++ Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67 Query: 46 -LAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L H + D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136 ASA MDK K++ G+P N + + + P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194 SS+GI + + + + ++ ++++E+YVD E+ V+G+ V V Sbjct: 188 SSVGISKASNREELEKAVDLALQFDL--KVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S++P + G S+ LL M+ A Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMIALA 347 >gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271] gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271] Length = 360 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 168/351 (47%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S+E E+S+ S +A A+ ++ +++ I V Sbjct: 6 VALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMPA 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+A ++HG+ GEDG +Q +L++ Sbjct: 66 MLANTSADTIRERLREISFSDPRNRFLFDFSEEGIDVALPIIHGSTGEDGKIQGLLDMFS 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS-------PP 127 +PYT G+ ASA++MDK +K G+ + P + R+ D Q ++S P Sbjct: 126 VPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSVILEEFTLP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 + +KP GSS+GI + + + + L ++ ++LIE+ ++G E+ V+G+ S Sbjct: 186 FFVKPASQGSSIGITKVHRPEELAAAL--EKAFMVDTKVLIEKTIEGREIEVAVLGNDSP 243 Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V P DFY + KY + ++ +PA++P ++ ++V A A++A+ CRG+SR Sbjct: 244 VASVPGEVEPGGDFYDFTDKYINGKASLHIPARLPEEVLQKVSTEALKAYRALECRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + K+ EIN PG T +S++P M +G F +L+ +++ A Sbjct: 304 VDFFIEHATGKIILNEINTVPGFTGISMYPMMMDASGIDFSQLIDRLLQLA 354 >gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 375 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S E +VSL + A L+ A ++++ + R + + Sbjct: 7 LGLIYGGKSGEHDVSLRTAFAVMGELDYAKYEITPFYITRLGEWRVGSMLGGQPGAIDEL 66 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LE+ Sbjct: 67 RLAPVDGAPVPIVPDLPLAPLLDRLAGGALPGGGQPIDVVFPLLHGTFGEDGTIQGLLEI 126 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125 +IPY +G+LASA MDK+ K++ + G+P C NR + + Sbjct: 127 ADIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFRYFNRAQWEKDASFFIMECEVALG 186 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP GSS+GI K + + ++ ++++E++VD E+ V+G+ Sbjct: 187 YPCFVKPSNLGSSVGISKAKNRDELIAAI--DFAFRFDRRVIVEEFVDAREIEVSVLGND 244 Query: 186 SLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 ++ P ++FY Y+ KY ST +PA IP V+ +A A AI G+ Sbjct: 245 DPKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPANIPNKTADAVRDMALRAFLAIDGAGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF ++F E+N PG TP+S++P M +G +++LL +++ A Sbjct: 305 SRVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMWKESGLPYKDLLDKLIDLA 357 >gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] Length = 365 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 162/360 (45%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GG S E EVSL S +A +AL+ ++V + + + + Sbjct: 5 VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64 Query: 46 ----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAI 71 L D+ F VLHG GEDG VQ + Sbjct: 65 TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122 LEL + Y G+ ASA+ MDK K ++ G+P+ P +LV R + Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ P +KP GSS+G+ K + + + + ++++EQ + E+ V+ Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRDGLAE--ALAEAARYDRRIVVEQGIPAREIEVSVL 242 Query: 183 GDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ +V+ VP ++Y Y KY S +PA I D+ +EV+RLA A Q+I Sbjct: 243 GNDEPEVSIPGEVVPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSIDG 302 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DFL D S +++ E+N PG TP+S++ +M A +G + LL ++ A + Sbjct: 303 AGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLLDRLISLALERK 362 >gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 302 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 181/299 (60%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +SE VS S C A AG+ +++VDR + LA +KPD FN LHG Sbjct: 8 VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V ++ + T Sbjct: 68 QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +VIKPL GSS G++++K P S WN QLL E ++ G ELT Sbjct: 128 PEHAMQAHVIKPLNDGSSFGVVIVKDGDKAPA----RSLWNTDTQLLCEPFIPGRELTVA 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTEI ++ FY ++ KY+ S H+LPA IP D+ + A A++A GC Sbjct: 184 VLEGTALCVTEI-TSENSFYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFGC 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG+ R+D+ ++ ++ ++F LEIN QPGMT S+ PE A + G + EL+ ++E A C Sbjct: 243 RGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQCD 301 >gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] Length = 393 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 164/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I VN Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGL--KYDEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638] Length = 364 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFNTLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413] gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 367 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+SS +A ASAL + +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 65 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F +LHG GEDG +Q +L L Sbjct: 66 GAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 125 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122 ++ P+ SG+L SAL MDK+ K G+P V R + + + Sbjct: 126 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 185 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP GSS+GI ++ Q + L ++ N+ ++++E V E+ C V+ Sbjct: 186 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAA--NYDRRIIVEAGVVAREVECAVL 243 Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ + + SDFY YE KY++ + ++PA IP +I +++Q +A A A+ Sbjct: 244 GNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVDA 303 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + +V EIN PG T S++P++ AY+G F EL+ +V+ A Sbjct: 304 AGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359 >gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74] Length = 364 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C ++G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAILGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A ++Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 321 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+E EVSL S + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68] Length = 364 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+P+ I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 9 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q L + + Sbjct: 69 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L+SA DK +K+++ G+ + P I + R + + + P +K Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 246 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S+FY+Y+ KY N + V+PA+IP ++ +++ +A A+Q +GC G +R D Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVDV 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S +P++ +G + +L+ ++E A Sbjct: 307 FLTA-DNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIELA 353 >gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] Length = 372 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 58/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44 + VL GG S E EVSL S + A++ ++V I + + GL Sbjct: 8 VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67 Query: 45 VLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D+ F VLHG FGEDG +Q +LEL ++ Y SG+L S Sbjct: 68 TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138 A MDK K++ ++ G+P P + V R + + + P +KP GSS Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193 +GI + + + ++ ++ +L++EQ V G EL V+G+ +L+ + + Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDR--KLVVEQGVGGPGAKPRELEVAVLGNETLEASVVG 245 Query: 194 --VPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 VP +FY YE KY S ++PAK+ K+++ +A A +A C G++R DF Sbjct: 246 EIVPAKEFYDYEAKYQMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVDF 305 Query: 249 LFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 L +P ++ K + EIN PG T +S++P++ +G + EL+ ++ Sbjct: 306 LMEPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELIDRLI 354 >gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] Length = 409 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 161/352 (45%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E EVSL S K +A++ F V I +D+ Sbjct: 47 VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106 Query: 45 --VLAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 L H D+ F ++HG GEDG +Q +L++L Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVI 130 +P+ S I+ SA MDK K+++ G+PV P + + R T + + Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ ++ + + ++ ++H +++IE V G E+ C ++G+ + + Sbjct: 227 KPANQGSSVGVSKVRNAEEYARAIAEALRFDH--KVIIELGVVGREIECAILGNEAAQAS 284 Query: 191 EIA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + SDFYSY+ KY S + V+PA++ + + V+++A A QA+ CRG++R D Sbjct: 285 VCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARVD 344 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V EIN PG T +S++P++ G + L+ ++E A Sbjct: 345 VFLTE-EGEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFALAR 395 >gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] Length = 313 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRDDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P D +++RLA Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKRLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAIGISYSELVVKVL 307 >gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 302 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL G S EREVSL SG+A +ALE G +V+ +D + + L PD + LHG Sbjct: 3 ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GE+G +Q +L+ L +PY SG+ ASA++MDK+ SK++ + G+P + S Sbjct: 63 DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122 Query: 121 QH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P V+KP GGS++G+ + ++ +P + + + Q+LIEQY+ G Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAVRLAL--QYSPQVLIEQYIPGQ 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+T ++ L EI DFY YE KY+ S H++P + D+ K A+ A Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+G G+ R+D DP R + LE+N PGMT S+ PE A AG F +L+ +++ Sbjct: 241 RAVGSTGLVRADVRVDPEGR-PWVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIIDR 299 Query: 296 A 296 + Sbjct: 300 S 300 >gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] Length = 313 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SG+ L +AG D L AFN LHG Sbjct: 12 VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT G+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDHA 131 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + P +KP GSS+ +I +K ++P L ++ H +++E+ ++ Sbjct: 132 ARAAEIVAKLGLPLFVKPASEGSSVAVIKVKDAAALPAALDEAG--RHDRIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y KY + ++ +++P I E +RLA Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A + +GC G R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFEVLGCSGWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. SMY] Length = 361 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + V Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKML 64 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F +LHG GEDG +Q +LELL IPY Sbjct: 65 QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ + + + + P +KP Sbjct: 125 NGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + ++ + ++++E+ ++G E+ GV+G+ V Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999] Length = 321 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 160/301 (53%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L+GG S+EREVSL+SG+A A++ G + D + L + A +LHG Sbjct: 6 LAILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115 GEDG +Q LE L IPYT SG+L SA++MDK+ +K V +CG+P + Sbjct: 66 RGGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVD 125 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P ++KP GSS+G+ + + + +++ + +++LIEQY+ G Sbjct: 126 EAQTIMLNIGPDLMVKPSHEGSSIGMSKTGTAEELISAV--NTALTYDERVLIEQYIVGT 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++G+ +L + P + FY YE KY + + + P+ + + + +L+ A Sbjct: 184 EYTVSILGENALPSISMVTP-NIFYDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAF 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+ C G R D + D + + LE+N PGMT S+ P+ A AGY F EL+ ++ Sbjct: 243 KAVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELVKQILVS 302 Query: 296 A 296 A Sbjct: 303 A 303 >gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 293 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 149/295 (50%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG+A AL + + D L + D AF VLHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS +DK R+K + + + PSI+ + Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+++KP GSS+GI + D I L+ +W + LIEQ+++G E T Sbjct: 122 PIDFPLPWMVKPTLEGSSIGISKV--DSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVA 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L V +I FY YE KY S ++ P + + +Q +A A AI Sbjct: 180 ILGDKALPVVKIIT-DQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF+ + K + LEIN PGMT S+ P A G SF +L++ ++ + Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292 >gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] Length = 366 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L + D FNVLHG Sbjct: 72 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELR--QYDRVFNVLHG 129 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P ++ T Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAETDWQ 189 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +++ P +IKP+ GSS+G+ + +P + GD ++ E+++ G E T Sbjct: 190 QIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELPAAYATAI--QCGDVVMAERWITGREFT 247 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A +A Sbjct: 248 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFRA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G F L ++ Sbjct: 308 VEAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGIDFESLCWHIL 362 >gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 366 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDSASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG++ SA+SMDK +K+++ G+ + P I + R D+ + P IK Sbjct: 126 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTA-DNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350 >gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987] gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] Length = 361 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120] gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 164/356 (46%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+SS +A ASAL + +++ + + + Sbjct: 3 VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 62 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F +LHG GEDG +Q +L L Sbjct: 63 GAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122 ++ P+ SG+L SAL MDK+ K G+P V R + + + Sbjct: 123 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 182 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP GSS+GI ++ Q + L ++ N+ +++IE V E+ C V+ Sbjct: 183 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAA--NYDRRIIIEAGVAAREVECAVL 240 Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ + + SDFY YE KY++ + ++PA IP DI +++Q +A A A+ Sbjct: 241 GNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAVDA 300 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + +V EIN PG T S++P++ A++G F EL+ +V+ A Sbjct: 301 AGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLA 356 >gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 360 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 157/343 (45%), Gaps = 56/343 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44 V+ GG S E EVSL S + AL+ +++ + + + Sbjct: 8 VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + K DL F VLHG GEDG +Q + E+ +PY Sbjct: 68 HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKP 132 SG+L AL MDK R K V + G+P+ P I V + +D+ +S P +KP Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + ++ + L +++ + D+++IEQ V E+ V+G+ + T Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAAA--YDDKVVIEQGVKAREIELAVLGNETPQATVP 245 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P +FY YE KY +S ++PA++ ++Q A QA+ G+ R DF Sbjct: 246 GEIIPCKEFYDYEAKY-IDDSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDFFV 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++F EIN PG T +S++P++ G S+ ELL ++ Sbjct: 305 T-DTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELLNRLI 346 >gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] Length = 303 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + ++ GG SSEREVSL+ + A AL G V+ D+ L+ + D A LH Sbjct: 3 ILLIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P + Sbjct: 63 GAPGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPPPA 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D Q + P +K GGSSL + + + D++ + + GD+ LIE + G E+T Sbjct: 123 DWQPRLPYPLFVKSNTGGSSLRLGRARDRAEL--DMVLAEIFAAGDEALIEPELKGREVT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CG++G+ +L I DF+ YE KY++ + + PA I ++ V+ LA AH+A+ Sbjct: 181 CGILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAAHRAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G RG SR+DF+ D + + LE+N PGMT S+ P+ A G F LL ++E Sbjct: 241 GLRGYSRADFILDA-DQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLMELGMA 299 Query: 299 LR 300 R Sbjct: 300 RR 301 >gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 353 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 152/339 (44%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EV+ S A++ + V+ I + + ++ Sbjct: 7 LGVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQ 66 Query: 47 ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 A D+ F ++HG GEDG +Q + E++ PY G+LASA+ Sbjct: 67 EDTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVG 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGII 142 MDK+ SK + G+PV P + S + P IKP+ GSS+GI Sbjct: 127 MDKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGIT 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDF 199 + + Q+ N+ ++L+E ++D E+ C V+ + + V +F Sbjct: 187 KAHDRAELIAGVHQAL--NYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEF 244 Query: 200 YSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 Y YE KY+ +S +PA+I +++ A A AI G+SR DF D +++ Sbjct: 245 YDYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLY 304 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 E+N PG T +S++P M + G S+ EL+ ++ A+ Sbjct: 305 INEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343 >gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017] gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017] Length = 352 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS++S KA AL+ A ++V + ++ VL Sbjct: 6 VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 KP D+ F +LHG GEDG +Q +L+L+++PY SG+L SA Sbjct: 66 GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------------HLISPPYVIKPLKGGS 137 MDK+ K V ++ G+P V R + S I P +KP GS Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195 S+GI ++ + L ++S++ ++++E V E+ C V+G+ + + Sbjct: 186 SVGISKVRSRLELEAALDSAASFDR--RIVVEAGVVAREVECAVLGNGRPRASVVGEISF 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ ++ +PA +P DI +++Q +A A A+ G+SR DF + + Sbjct: 244 DSDFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVESTG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T S++P + + +G F +L+ +++ A Sbjct: 304 EVLINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQLA 344 >gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] Length = 362 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + ++ GG S E EVSL + A +A +++ + ++ Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67 Query: 48 ----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 ASA MDK K++ G+P N + + P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194 SS+GI + + + + ++ ++++E+YVD E+ V+G+ V V Sbjct: 188 SSVGISKANNREELEKAVDLALQFDL--KVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S++P + G S+ LL M+ A Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMIALA 347 >gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30] gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30] Length = 356 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIELA 341 >gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 361 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 157/348 (45%), Gaps = 52/348 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R T + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELINLAIAR 350 >gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] Length = 349 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S +A A AL ++V I + + Sbjct: 6 IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65 Query: 46 -----------LAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L P +A F +LHG GEDG +Q +L L+++P SG+L SA+ Sbjct: 66 GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137 +MDK+ KQV G+ ++R + S + + P +KP GS Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196 S+GI ++ + L ++S++ ++++E V E+ C V+G+ + + + Sbjct: 186 SVGIAKVRSRSELETALDSAASYDR--RIIVEAGVVAREVECAVLGNDNPKASVVGEISY 243 Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ +T +PA +P + +++Q +A A A+ G+SR DF + + Sbjct: 244 TSDFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEATG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T S++P++ A G F +L+ ++E A Sbjct: 304 EVLINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIELA 344 >gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055] Length = 377 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] Length = 364 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S +A A AL+ +++ + + + + Sbjct: 6 VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + ++ F +LHG GEDG +Q +L L+++P+ Sbjct: 66 GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPP 127 SG+L SA+ MDK+ K + S G+ +V R + + + + P Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI ++ + L ++S++ ++++E V+ EL C V+G+ + Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAASYDR--RIIVEAGVEARELECAVLGNDTP 243 Query: 188 DVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + SDFY YE KY++ + +PAK+ +I +V+ +A A A+ G++R Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + +V EIN PG T S++P++ A +G SF EL+ +V+ A Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQLA 354 >gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 361 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK2000] gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK966] gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] Length = 364 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGFKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 342 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AVL GG S ER+VS+SS AL AG V ID R Sbjct: 8 IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67 Query: 41 --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + + D+AF LHG GEDG +QA+L+L +PYT SG + Sbjct: 68 PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++M+K +K++ SS G+ +++ D + P ++KP + GS++G+ ++ Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + Q+++EQY+ G ELT GV+G +L V EI + + Y KY Sbjct: 188 PDELESAVRLARRF--DTQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + PA +P + QR+A AH + G SR+D D ++ LE+N P Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLDAQ-GILWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA +G +F +L + Sbjct: 305 GMTATSLLPQSAAASGIAFPQLCEQI 330 >gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MRSA252] gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS00] Length = 356 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 316 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 165/307 (53%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 + V+MGGISSEREVSL +G+ + L+ + ++ I + + + + D A L Sbjct: 3 IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFT 117 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + G+ + + + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQTPAGLYWKDVYD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P ++KP GGSS+G+ +++ ++ + + ++S + G +LIE Y+ G EL Sbjct: 123 PQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYLDQG--ILIEPYLKGTEL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I S+++ Y KY + ++P DI + V+ A ++Q Sbjct: 181 TCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEE-KVIELPPDIQQRVREAALASYQL 239 Query: 238 IGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C+ +R D + + LE+N PGMT S+FP+ AA AG +F ++L ++ Sbjct: 240 LQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVLDRII 299 Query: 294 EDASCLR 300 + R Sbjct: 300 ASSLHER 306 >gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 361 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVA--YDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDTDLD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + ++++ H ++ E+++ G E T Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAAAIAKATA--HDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILEQ 302 >gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 363 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P + ++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 +R + E+N PG T +S++P++ +G ++ EL+ ++ E A R Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355 >gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 304 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +L + D Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + PA + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAAGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301 >gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca] gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39] Length = 358 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLK 134 SA+ MDK+ K S G+P V R + D + P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ Q + L ++ + ++++E V+ EL C V+G+ + + Sbjct: 186 LGSSVGISKVRSRQELETALDAAA--TYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243 Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T +S++P++ + G SF EL+ ++E A Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIELA 347 >gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 364 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 9 LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 68 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 69 QMNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 129 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPA 188 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ + I Sbjct: 189 NLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVIG 246 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK +FY Y+ KY ++ ++PA++ + K +QR A A Q++ G++R+DF Sbjct: 247 EIVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADFFLT 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + + +L+ ++ A Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTDLPYPKLIEELIRLA 350 >gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514] gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514] Length = 304 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+EREVSL +G A A AL G +V ++D + A + + F LHG Sbjct: 12 ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGTE--VVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP V+KP++ GSS+G+ + + L ++ + Q+L+E+ + G E T G Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ L + E+ PK+ Y Y+ KY++ + ++ PA + +Q A A +AIG Sbjct: 188 ILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R SR D + P + + LE+N PGMT S+ P+ A AG + EL MV+ A Sbjct: 247 RDYSRVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301 >gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640] gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06] Length = 304 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +L + D Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + PA + ++ LA QA Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAAGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301 >gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 361 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] Length = 361 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601] gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601] Length = 271 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 121/276 (43%), Positives = 176/276 (63%), Gaps = 8/276 (2%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 G++V+++D R + L L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LA Sbjct: 2 RAEGYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK RSK+V + G+PV S+L ++ + ++H+++PPYV+KP GSS+G+ ++++ Sbjct: 62 SAVAMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQE 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + P + + + D L++E Y G ELT VMGD +L VT+I +Y Y+ KY Sbjct: 122 GANTPPRIAE----DMPDTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKY 175 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S H LPA +P +I+ A AH+A+GCRG+SR+DF +D + LE N Sbjct: 176 KEGGSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDESRGLDGLILLETNT 235 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE A + G SF L+ WMVEDASC R Sbjct: 236 QPGMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271 >gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 317 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSS-TIMEKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 315 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSS-TIMEKMIVEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 183 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299 >gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 361 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRQEAYSKVEDKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 333 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 174/300 (58%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+SSE+ +SL++G A ++LED G+ V +I VDR V + L D+AF LHG Sbjct: 6 IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++ +P ++NR Sbjct: 66 RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KPL GSS+G+ + + + ++ ++H +++E++V+G+E Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAACERAFVFDHS--VVVERFVEGME 183 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ V+ D +L E+A + + Y KY+S + +++P ++ + Y+ V A AH Sbjct: 184 VSVAVLEDRALGAVEVA-SEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G SR D + P + + LE+N P + P S+ P++A AG F +L+ ++ A Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLVEAILLGA 301 >gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] Length = 317 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ I PYV+KP+ GSS+G+ +I + L+L +SS +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ E+ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] Length = 293 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 146/295 (49%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+ER +SL SG+A L + D + D F +LHG Sbjct: 2 IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS SMDK R+K + + + PSI+ N + Sbjct: 62 RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIANIDQPIN 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GSS+GI + D + L+ +W + LIEQ++ G E T Sbjct: 122 PINFPLPWAVKPTLEGSSIGISKV--DNQMQLNDALMLAWQYAPYALIEQWIKGDEYTVA 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L V I +FY YE KY S + ++ P + L K +Q +A A AI Sbjct: 180 ILGDKALPVVRIIT-DQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAFFAINA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF+ + K + LEIN PGMT S+ P A G SF +L+ ++ + Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLVTSIINE 292 >gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 361 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSSAENAISPLSLSTEIIPSAASEENTIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] Length = 296 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK + L+ ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG +Q++LE ++IPY+ G L SA+ MDK SK+V+ S + I V Sbjct: 63 KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P V+KP GGSS+ ++KK + I ++ + ++ +++IE+Y+ G E+ Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNVKLAL--DYDTEVVIEKYIQGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ +L V I P ++F+ Y KY+ S ++ ++ + ++V+++ + Sbjct: 181 TCCMLKGKTLPVIAIK-PNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C+ +R D + + + LE+N PG+T S+FP+ A SF +LL +++ Sbjct: 239 LKCKSYARVDIIV--ENGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLLDKVIQ 293 >gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355] Length = 304 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL I YT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 301 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL+SGK+ + ++V I +D+ +V D A LHG Sbjct: 3 IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA+L+ L IPY+ G L+SA+ MDK +K ++ + + P I + ++ Sbjct: 63 QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D+ + P V+KP GGSS+ ++K+++ I + + W +++IE+++ G E+ Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKW--DSEVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I PK++F+ + KY + V+ ++ ++++EV+++A ++A Sbjct: 181 TCPVYGDRMLPVIAIK-PKAEFFDFASKYQDGGAEEVV-VELDKNLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LE+N PGMT S+ P+ AA F +L+ ++ED+ Sbjct: 239 LKCEVYSRVDMIVTT-DGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296 >gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1] Length = 364 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + R + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 361 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENSISPLSLSTEIIPSATSEEDAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELESAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 362 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 159/353 (45%), Gaps = 57/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + + L+ F+V + + + VLA P Sbjct: 8 VAVVFGGRSTEHGISCVSAGSVLAHLDRDRFEVVPVGITKEGAWVLAGDDPEALEIQDRR 67 Query: 52 -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 D+ F VLHG FGEDG +Q +LE+ Sbjct: 68 TPEITSGKAVALPGDPTRDLMYLEPGRGGEVLSSVDVVFPVLHGAFGEDGTIQGLLEMAG 127 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 +PY G+L+SA++MDK +K+++++ G+ V ++ R + + P +KP Sbjct: 128 VPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRERLGLPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DAS 186 + GSSLGI + + D + + +++IE V G E+ CGV+ +AS Sbjct: 188 ARAGSSLGITKVTDHADL--DDAIAEARRTDPKVIIESAVTGREVECGVLEFPDGRVEAS 245 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 L S +Y YE KY + +PAKI D + ++ A A +A+ C+G++R Sbjct: 246 LPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRALECQGLARV 305 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF ++ E+N PG T +S++P M A G + LL ++E A Sbjct: 306 DFFV-ADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETAIAR 357 >gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a] gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia K279a] Length = 404 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE EVSL S K AL+ F+ + +D+ L+ Sbjct: 46 VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ ++HG GEDG +Q +L ++ + Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R + P +K Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K L + ++H ++L+E V G E+ C V+G+ + Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALALRYDH--KVLVESAVVGREIECAVLGNEHPQASV 283 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY ++ + V+PA I ++++A A+Q + C G++R D Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVDV 343 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G + L+ ++E A Sbjct: 344 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 390 >gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1] gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 361 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEIL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187] gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 361 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 365 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG S+E EVSL S K A AL+ F I + + Sbjct: 7 VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66 Query: 45 --------------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 VL LK D+AF +LHG GEDG +Q + +++++P Sbjct: 67 DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLK 134 + G+ +SA MDK K++++ +P +L+ + + P+ IKP Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191 GSS+G+ IK + + ++ ++L E+++ G E+ C VMG + Sbjct: 187 AGSSVGVHKIKTAEDFV--VKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P+ +FYSYE KY N + +PA++ + K VQ++A +QA+GC G++R DF Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P + +++ EIN PG T +S++P+M +G S+++L+ +++ Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQ 347 >gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4] gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 362 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG VQ +LELL IPY Sbjct: 66 QMSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348 >gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945] gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18] gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140] gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19] gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11] gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1] gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1] gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332] gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945] gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 304 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301 >gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 308 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 112/301 (37%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R + Sbjct: 69 RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + ++ + +++E+YV G E Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLVNAAAELGPACRDAA--GYAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L EI VP + FY Y KY++ + + PA+IP + V A AH+ Sbjct: 187 VDVAVLEGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 356 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] Length = 353 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 159/344 (46%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VLMGG SSE +VSL S K ++ + V + + + L Sbjct: 6 IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA SMDK +K VV S GV + V R + + + P +KP K Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS G+ + + + L ++ H ++L+E+ + G E+ CGV+G + + Sbjct: 186 AGSSQGVSKAENREELIDALNLAA--KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +FYSY+ KY++ S V+ ++P +E+++ A +A+ C G+SR DF Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G S + L+ +++ A Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLIDLA 347 >gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 302 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGL--KYDEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88] gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 358 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 90/331 (27%), Positives = 160/331 (48%), Gaps = 40/331 (12%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------- 44 + GG S+E EVS +S + + +++ I + + Sbjct: 26 VFGGQSTEHEVSRNSVTSILKNINRDKYEICPIGITKEGKWFQYTGDINNIKNGQWEKDN 85 Query: 45 ---------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 VL + + +L F VLHG +GEDG +Q + +L+ +P G+L+SAL MDK+ Sbjct: 86 KNKLENGYNVLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIY 145 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKD 147 +K V+ + ++VN+F + + IKP GSS+GI Sbjct: 146 TKYVLENFKFKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNK 205 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELK 205 + + L ++ H +L+E+ ++ E+ V+G+ V +P +FY YE K Sbjct: 206 EELLKGL--EEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAK 263 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y + NS ++PA I +E++ LA ++ +GC G++R DFL D S +V++ E+N Sbjct: 264 YQNENSELLIPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTL 323 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P++ +G S+ L+ ++E A Sbjct: 324 PGFTKISMYPKLWEASGKSYSALIDELIELA 354 >gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] Length = 308 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A +AL D L L D AF VLHG Sbjct: 9 VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLSLGVDRAFIVLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 GEDG +Q L+ L +PYT S +L AL+MDK+R+KQ+ S +PV PSI++ Sbjct: 69 RGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQW 128 Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + ++KP GSS+G+ V + + + ++ + +L+E++++G Sbjct: 129 DAAQILKQLGDKVIVKPALEGSSIGMSVASEAGELDAAIREALRYQSD--VLVERWINGK 186 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++ D +L V + P FY + KY + ++ + PA + + + ++ LA LA Sbjct: 187 EYTVALLNDEALPVIRLQTPH-QFYDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLAF 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AI RG R D + D + F LE N PGMT S+ P A G SF +L+ ++ Sbjct: 246 SAIDGRGWGRIDAMRD-DEGQWFLLEANAVPGMTEKSLVPMAAKQYGLSFEQLVWNIL 302 >gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 298 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 142/297 (47%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSER VSL SG+ L ++V I +D +V D AF LHG Sbjct: 3 VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG +Q ILE LEIPY+ +L SA+ M+K +K ++ + + P I V Sbjct: 63 KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +K + + + + + +++IE+Y+ G E+ Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAVKEGL--KYDTEVMIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I S F+ Y KY + + + +V ++ Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDDNGAEE-NVVYLKEQLQSQVAEISKKIWDL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + CR SR D + + + LE+N PG+TP S+ P+ A G F ELL +++ Sbjct: 240 LYCRSYSRVDMII--SNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELLDKIIK 294 >gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 364 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ + F+ I +D++ L Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNSENPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKANQQVVETTGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I + R + + + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNRLGLPMFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + + +++L+E V G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVGSEAEYHAAVELALGF--DEKVLLESAVQGREIECAVLGNDNPIASG 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V + FYSY+ KY + V+PA I + + ++RLA A + +GC G++R D Sbjct: 244 CGEIVVSNGFYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLGCAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ AG S+ EL+ ++E A Sbjct: 304 FLT-DDGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350 >gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146] gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 390 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG S E EVSL S K A++ + F V+ I +D+ L + Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + R T + + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++++E+ V G E+ C ++G+ + Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADALRFDH--KVIVERGVIGHEIECAILGNEVAQASV 266 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY S ++ V+PA + ++ + V++ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVDV 326 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G S++ L+ ++E A Sbjct: 327 FVTA-ENEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIELA 373 >gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] Length = 315 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 110/295 (37%), Positives = 169/295 (57%), Gaps = 13/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S EREVSL+ + A+ + V + D + ++A + D+AF +LH Sbjct: 9 VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L+LLEIPY SG+L SAL+MDK +KQ+ G+ V + +D Sbjct: 69 GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128 Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP++ GSSLG+ ++ + + L +++ DQ+++E+++ G Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLVDQPAELVPALKL--AFDFDDQVMVEEFIAGR 186 Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT GV+G+A L V EI K F+ Y+ KY + + + PA++P ++ EVQR A Sbjct: 187 ELTGGVLGNADLTPLPVVEIIPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRCA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 LAHQA+ RG SR+D + ++ LE N PGMTP S+ P+ AA G SF Sbjct: 247 CLAHQALNLRGYSRTDMIL--AEGGLYVLETNTIPGMTPTSLLPQAAATHGLSFG 299 >gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L] gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 361 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANTEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18] gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035] gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2] gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] Length = 304 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K+ + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--IYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301 >gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 361 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 -QDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421] gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421] Length = 368 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 168/354 (47%), Gaps = 62/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG SSE EVSL S + + + I + + L + Sbjct: 3 IAIMYGGKSSEHEVSLVSATSIVRNINSL-HTIHLIGITKQGTWFLQNQDELMRIRSDEQ 61 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L+ D+ F VLHG+FGEDG +Q + E+ E+ Sbjct: 62 AVLQIHTAAENQVSIIPGGGTKGALKVGQRFLETDVIFPVLHGSFGEDGTIQGLFEMAEL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126 PY G+LAS+LSMDK ++K + + G+P+ P V + T D + + Sbjct: 122 PYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQSERDLLIQEIEKELDY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P +KP + GSS+G + K + ++ SW++ ++L+E + E+ C V G+ Sbjct: 182 PLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDY--KILVEACIPAREIECSVTGNET 239 Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + EI +P FY YE KY+ + + +PA+I D K ++ +A A++ + G Sbjct: 240 CIAYTPGEI-IPSHSFYDYEAKYTDPDGAILKIPAEITDDERKTIREIAMKAYKTLDLSG 298 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF D ++K++ EIN PG T +S+FP+M A +G + +L+ +++ A Sbjct: 299 FARVDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYPDLITLLLQLA 352 >gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25] gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25] Length = 364 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D++ L Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLLNQENPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKASQQLVETSGTGLLEHVDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I + R + + + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGLPMFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + + +++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVGTEAEYHAAVELALGF--DEKVLVESAVKGREIECAVLGNEHPIASG 243 Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V S FYSY+ KY + V+PA I D + ++ LA A + +GC G++R D Sbjct: 244 CGEIVVSSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLGCSGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ AG S+ EL+ ++E A Sbjct: 304 FLT-DDGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350 >gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila] Length = 316 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV + + LA+N++H Sbjct: 15 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPEGTE--LAYNIIH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + +++ Sbjct: 73 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP GSS+G+ ++++ + + + ++ HG +L+E+++ G ELT Sbjct: 133 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G++ +L V I P+S FY KY + ++ PA +P + VQ A A+ Sbjct: 191 GILDGKALPVIHI-CPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAY 249 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + E Sbjct: 250 KAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAE 308 >gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 362 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG VQ +LELL IPY Sbjct: 66 QMSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348 >gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3] gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 364 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE EVSL S K AL F+ + +D+ L+ Sbjct: 6 VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R + + + P +K Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K L + ++H ++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELALRYDH--KVLVESAVVGREIECAVLGNTLPQASL 243 Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FY+Y+ KY + + V+PA I D +Q++A A+QA+ C G++R D Sbjct: 244 CGEVVVHDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 350 >gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 366 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I + R D+ + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIELA 350 >gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 362 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG VQ +LELL IPY Sbjct: 66 QMSGEENTISPVSLSTEIIPTVTSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGVPYPELIEELIRLA 348 >gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] Length = 385 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRTKYDVLPIGITKDGRWALTADAPERMAIIDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 QPSVDVLAESDEGGVILPVDPSNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P ++V Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYLVVRPREWRQDEQAARKRIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + H ++L+E + G E+ Sbjct: 199 DFAGDHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIAEAQRHDPKILVEAALRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ ++PA + + EVQRLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVQRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V Sbjct: 316 AFEAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLV 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579] gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264] gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A++ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A + C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 364 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 9 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 68 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 69 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 188 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 189 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT] gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium novyi NT] Length = 343 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 164/335 (48%), Gaps = 41/335 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201 + + L ++ ++ ++L+E ++ E+ V+G+ VP ++FY Sbjct: 185 AHNREELEAGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPVAATPGEIVPANEFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KYS+ S +LPA + + ++V+ LA + + C G+SR DFL D + +V+ E Sbjct: 243 YEAKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P+M G ++ EL+ ++E A Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337 >gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 361 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] Length = 311 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV + + LA+N++H Sbjct: 10 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPEGTE--LAYNIIH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + +++ Sbjct: 68 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP GSS+G+ ++++ + + + ++ HG +L+E+++ G ELT Sbjct: 128 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 185 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G++ +L V I P+S FY KY + ++ PA +P + VQ A A+ Sbjct: 186 GILDGKALPVIHI-CPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAY 244 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + E Sbjct: 245 KAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAE 303 >gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 171/343 (49%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA+ MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R + E+N PG T +S++P++ +G S+ EL+ ++ Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344 >gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] Length = 299 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 169/297 (56%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ER++S+ SG A AL++ ++VS ID + L + D AF LHG Sbjct: 6 IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFICLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++LELL++P+T S AS L+M+K SK V ++ + +++N+ +D Sbjct: 64 KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + +S P+++KP GSS GI ++K + L +S + ++ E++++G E Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDAS--KYDPTVIAEEFIEGREF 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++G+ SL V EI K++FY Y KY S + P + ++ ++++ +A A + Sbjct: 182 TVSILGNKSLGVLEITT-KNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 IGC G R DF+ D + +E+N PGMT S+FP A AG +F + + +V+ Sbjct: 241 IGCSGWGRVDFMMDKKFN-FYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVD 296 >gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont] Length = 364 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ G S+E EVSL S K A++ + V + +D+ L Sbjct: 6 VGIVFGDKSAEHEVSLQSAKNILEAIDKNKYDVVLLGIDKQGEWHLNDASGFLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ ++HG GEDG +Q +L + + Sbjct: 66 LIAPNRSGENVALVPGSRGEQLITRQQAQPLSPLDVIIPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V R +D Q +I P IK Sbjct: 126 PFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWLSVTQAQRAALDVQAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + D ++ ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVTQPDEF--DAALGLAFRFDRKVLIEQGISGREIECAVLGNEAPEASP 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S + T V+PA I + + ++ +A A QA+ C G++R D Sbjct: 244 CGEIVVHDAFYSYDTKYISESGTQVVVPADISTEASEAIRAVAITAFQALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T +S++P++ AG S+ +L+ ++E A Sbjct: 304 FLTE-TGDIIVNEVNTLPGFTNISMYPKLWLAAGLSYSDLITRLIELA 350 >gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13] Length = 356 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 48/339 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+E +VSL + A A++ F+V + + + Sbjct: 7 LLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQLKL 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F +LHG GEDG VQ +LELL +PY +G+LAS+ Sbjct: 67 EEGGTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASSA 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140 MDK+ K + G+P R + + + P +KP GSS+G Sbjct: 127 GMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV--PKS 197 I K + + ++++ ++++EQ ++G E+ GV+G+ + + I PK+ Sbjct: 187 ISKAKNREELETAF--REAFDYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIAPKT 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY Y+ KY ++ ++PA+I DIY++V+ +A A +AI G+ R+DF K+ Sbjct: 245 EFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADFFLTK-EGKL 303 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S+FP + + S+ +L+ +V A Sbjct: 304 YINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLVGYA 342 >gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] Length = 343 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG S+EREVS++SG+ AL + K +D +L P Sbjct: 3 IIVLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAA 62 Query: 52 --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F LHG GEDG VQ++L+L+ I Y Sbjct: 63 DAMREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGG 136 T SG L+S ++MDK +K V + GVP I + + + + + + P ++KP GG Sbjct: 123 TGSGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGG 182 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ + LL+ ++++ +++++EQ++ G E + V+ + V EIA P Sbjct: 183 SSVGVCIANNQTEYQAALLE--AFSYENEVVVEQFITGREFSVAVVDGKAYPVIEIA-PL 239 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY + + PA + + KE+Q+ A + ++A+ + +R DFL D Sbjct: 240 QGFYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDDEGN- 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + +L ++E Sbjct: 299 MYCLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336 >gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] Length = 313 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 363 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 176/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + +A++ + ++ I VD+ Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64 Query: 41 ----------------SVGLVLAHLK-------PDLAFNVLHGNFGEDGLVQAILELLEI 77 S G L ++ D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++ R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNHAPQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TDA-RQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355 >gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15] Length = 323 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 161/299 (53%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL AG +DV + + + D F LHG Sbjct: 22 VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P ++ Sbjct: 82 RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPTPKFRTMSGADQAE 141 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P +KP + GSS+GI + + ++ + +L+E++++G E T Sbjct: 142 QIIDELRAPLSVKPSREGSSIGIRKVHTAAELAH--AYEAAAALDNLVLVEEWIEGPEFT 199 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D +L ++ + FY YE KY + ++ + +P + + +Q LA A + Sbjct: 200 VSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAFRV 259 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR R D + D K + LE+N PGMT S+ P A AG SF EL++ +++D+ Sbjct: 260 VGCRTWGRVDIMQD-SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILKDS 317 >gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 364 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 9 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 68 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 69 KMSGAENAISPLSLSTEIIPAAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 188 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 189 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 361 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] Length = 320 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P ++ Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ +LA Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 257 AFHSVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 163/347 (46%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S E EVSL S + +A++ + + + I + + Sbjct: 6 VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG VQ + EL+ IPY Sbjct: 66 DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 SG+ SA+ MDK+ +K+++ G+PV + + + + + P +KP Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVFYKKDLPHKLTEMVEEVEKSFGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + ++ ++ ++ +LL+E+++ E+ C V+G+ V Sbjct: 186 ANLGSSVGITKAHDREELKNAIMHAAEFDR--KLLVERFIPAREIECSVLGNDDPVASVP 243 Query: 191 EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P +FYSY KY S ++PA + + ++++ LA A++A+ C ++R DFL Sbjct: 244 GEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVDFL 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ + E+N PG T +S++P++ +G ++EL+ ++E A Sbjct: 304 ISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIELA 350 >gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 361 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESSVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 345 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA+ MDK +K+++ G+ V P +++R ++ + P IKP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQLGLPMFIKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R + E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345 >gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] Length = 344 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 113/343 (32%), Positives = 170/343 (49%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL+GG+S+ER+VSLSSG A AL + G +V +D V Sbjct: 7 ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66 Query: 50 -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D F LHG GEDG +QA+L+++ +PYT SG Sbjct: 67 PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGS 137 LASAL+MDK SK V+ S GV I+ D + P V+KP K GS Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 ++G+ +++ + + + ++ + D+++IE++V G ELT G++GDA L EI P Sbjct: 187 TVGLSIVRAPEELAAAV--REAFRYDDEVMIERFVPGRELTVGILGDAVLPTIEIQ-PVK 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + Y YE KY+ + + A++ + ++ A A QA+ RG +R DF DP + Sbjct: 244 ELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDPQ-GQP 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N PGMTP S+ P+ AA AG F +L +V+ A R Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al Hakam] gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 367 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 12 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 71 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 72 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 131 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 132 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 191 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 192 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 250 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 309 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 310 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353 >gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae B728a] gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 363 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R + E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355 >gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] Length = 364 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E EVSLS+ +A AL ++V I + Sbjct: 10 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++ D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 70 QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R ++ ++ P +KP Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194 GSS+GI + + + + ++++EQ + E+ V+G+ +V+ Sbjct: 190 GSSVGISRATNRDELIKAI--EVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEI 247 Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y+ KY ++ ++PA++P + ++ LA A +AI G+ R+DF Sbjct: 248 KPVTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADFFVTA- 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 307 DNSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 349 >gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43] Length = 312 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ + +K ++P + H +++E+ ++ Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P + E +R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRVARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCADWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580] gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580] Length = 361 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S+E VSL + A AL+ F + I + V Sbjct: 5 LGLVYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKML 64 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F +LHG GEDG +Q +LELL +PY Sbjct: 65 QFEQTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 +G+LAS+ MDK+ K + + G+ + + T + + P +KP Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + ++ + ++++E+ V G E+ GV+G+ V Sbjct: 185 ANLGSSVGISKCRSREELDQAF--ELAFQYDRKIVVEEGVIGREIELGVLGNDEPVCSVA 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PK DFY Y+ KY ++ ++PA + D Y+ ++ +A A QAI G+ R+DF Sbjct: 243 GEIAPKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R V E+N PG TP S+FP + +G + EL+ +V A Sbjct: 303 TNEGR-VLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 347 >gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] Length = 382 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 162/362 (44%), Gaps = 65/362 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS ++ + SAL+ + V I + + VLA P Sbjct: 20 VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L+L Sbjct: 80 IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 ++ Y SG+ ASA+ MDK K V ++ G+PV P ++ D+ + Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + ++ H ++++EQ + G E+ CGV+ Sbjct: 200 PVFVKPARAGSSMGISKVDSPDGLRAAV--EAAREHDPKVIVEQGIVGREIECGVLDGHG 257 Query: 187 LDVTE-------IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 D I V FY +E KY + + PA + DI +++ ++A +A A Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G++R DF + + EIN PG TP S++P M A AG ++ +L+ ++ A Sbjct: 318 GCEGLARCDFFLT-DTGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLIDELIALAME 376 Query: 299 LR 300 R Sbjct: 377 RR 378 >gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 168/295 (56%), Gaps = 13/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186 Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ +L V EI + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 AH+A+ +G SR+D + ++ LE N PGMTP S+FP+ AA G F Sbjct: 247 CRAHRALRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFG 299 >gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668] gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668] Length = 312 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ + +K ++P + H +++E+ ++ Sbjct: 132 ARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + D L + I VP +FY Y KY + ++ +++P + E +R+A Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] Length = 313 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P + E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFAVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] Length = 372 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 154/346 (44%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S+E EVSL S K + L+ F V + +++ Sbjct: 11 VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70 Query: 45 -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 71 RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I V + + + P IK Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 191 PANQGSSVGISKVSTESEFYAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEEPLASP 248 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY ++ V PA++ + +++ +A A++A+ C G+SR D Sbjct: 249 CGEIVLHDSFYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSRVDV 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V EIN PG T +S++P++ AG ++ +L+ ++E Sbjct: 309 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIE 353 >gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T] gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T] Length = 304 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 153/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG D VL + AF LHG Sbjct: 8 VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LEL+ IPYT SG++ASALSMDK R+K V S G+P ++ + Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPTPRYAILEHDSDWD 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP+ GSS+G + + + ++ + ++ E+++ G ELT Sbjct: 128 AVVAELGLPIFVKPVHEGSSMGATKVVEAGQLRAAWELAA--RYDRLVIAEEFICGAELT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D +L + I P Y Y+ KY + ++ + P+ +P E+Q + + + Sbjct: 186 APFLEDRALPLVRIVAP-GGNYDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMKCARVL 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + + + LE+N PGMT S+ P A AG F L L +++ A Sbjct: 245 GCRGWGRADLILTE-DGRPYLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEILQGA 301 >gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu] Length = 313 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAAKHDPIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V +I VP +FY Y KY + ++ +++P + D E++R+A Sbjct: 190 GGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDA-NGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] Length = 325 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 159/295 (53%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV +GG S+EREVSL SG+A SAL AG +DV + + + D F LHG Sbjct: 26 VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +QAIL IP+T S +LASAL+MDK+RSK V CG+P + Sbjct: 86 RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPTPKFRAMASAEEAG 145 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +KP + GSS+GI + +Q + Q+++ +L+E++++G E T Sbjct: 146 SLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAYTQAAAL--DPLVLVEEWIEGPEFT 203 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L + FY Y+ KY + ++ + +P + D ++Q LA A + + Sbjct: 204 VSLLQDQALPAIGLCTDHV-FYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRVL 262 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GCR R D + D + + LE+N PGMT S+ P A AG SF EL++ ++ Sbjct: 263 GCRTWGRVDIMQDRQ-GEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRIL 316 >gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] Length = 315 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 161/304 (52%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AVL GG +EREVSL SG +AL+ G+ ID+ DR+ L D+AF Sbjct: 8 IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LV 113 LHG GEDG +QA+L+L+ PYT S LA AL+MDK+ +K++ G+P I Sbjct: 68 IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPTPDYIADAS 127 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + +S P ++KP + GS++GI + + L + + ++L+E++++ Sbjct: 128 DVSVECVERQLSYPVIVKPSREGSTIGISKADNTEQLMQAL--RDAREYDSEILVEEFIE 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ D + + + Y YE KY + ++ + LP+ + D ++ L+ Sbjct: 186 GPEFTVSIINDEAYPAIGLKPSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKALSL 245 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ A+GC+G R D + + LE+N PGMT S+ P AA+ G S+++L+ + Sbjct: 246 DAYLAVGCKGWGRVDVM-RRNNGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLVEKI 304 Query: 293 VEDA 296 + A Sbjct: 305 LCSA 308 >gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 302 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGL--KYDEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296 >gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 367 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 12 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 71 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 72 KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 131 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 132 GVLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 191 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 192 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 250 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 309 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 310 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353 >gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 302 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ + ++++IE ++ G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYDEEVIIESFIKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGEFFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 314 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 189/310 (60%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 ++VLMGG+S+EREVSL SG AL G+ V Q+ +G +++ L +PD+ FN Sbjct: 6 ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + I YTHSG+ SA++MDK ++ V ++ G+PV +V Sbjct: 66 LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYVIKPL GSS+G+ +I+ + + + SW G L+E+++ G EL Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASI--ARSWRFGTSALVEEFIPGREL 183 Query: 178 TCGVMGDASLDVTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD +L VT+I FY Y+ KY S+HVLPA+I D ++ + LA A Sbjct: 184 TVGVMGDRALTVTDITPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALAA 243 Query: 235 HQAIGCRGISRSDFLFDPL-----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GCRG SR+DF +D + ++ LE N QPGMT S+ PE AA G ++ +L Sbjct: 244 HRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQLC 303 Query: 290 LWMVEDASCL 299 W+VE A+C Sbjct: 304 QWLVEQATCR 313 >gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13] Length = 357 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +VSL S + ++V I + + + Sbjct: 6 VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 K D+ F VLHG GEDG +Q +++L IPY Sbjct: 66 RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131 G+LASA MDK+ + V+ + ++ + ++ + P +K Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189 P GSS+GI +++ + +++H ++++IE+++ G EL V G + Sbjct: 186 PANCGSSIGINKATDAETLKDAVKI--AFSHDNKVVIEEFIQGKELEVAVFGYDNPFASF 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P +DFY YE KY S +PA+I D KE++ A A++A+GC+G+SR DF Sbjct: 244 VGEIEPCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLSRVDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG TP+S++P++ G S+ L+ ++E A Sbjct: 304 L-KQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349 >gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 298 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 161/296 (54%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG+A +L G+K ID+DR V ++ D+ F LHG Sbjct: 6 VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L+++ +PYT S A+ ++ DK+ SK+ GV I +N Sbjct: 66 TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELN---APK 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + VIKP + GSS+GI +++ ++ L ++ + ++++E+ + G+ELT Sbjct: 123 KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V I PK Y YE KY+ + +V + + V+ A A +GC Sbjct: 181 ILDGETLPVICIR-PKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R+D ++D R + LE+N PGMT S+ P+ A AG SF ++ M+ A Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGA 293 >gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] Length = 302 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 + ++ GG S EREV+LS + L G +V+ D R + GL A + AF LH Sbjct: 3 ILLIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTM 118 G+ GEDGLVQ +LE + +PY S AS L+++K SKQ+ + G+P V Sbjct: 63 GSPGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVA 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + L+ P V+KP GGSSLG+ ++ + + L Q LL E + G ELT Sbjct: 123 EWRPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEIAGQD--LLAEALIRGQELT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ L I +F+ YE KY + + + PA IP ++ + +Q +A AH A+ Sbjct: 181 CGVLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G SR+DF+ + LE+N PGMT S+ P+ A G SF +LL ++E Sbjct: 241 GLSDYSRADFMVTA-DGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIELGLR 299 Query: 299 LR 300 R Sbjct: 300 KR 301 >gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 305 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +G +D + L D A+ LHG Sbjct: 4 IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE L IPYT SGI++SA+S+DK R+K + S +PV P + + + Sbjct: 64 KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDISQ 123 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P VIKP GSS+GI ++ + + ++++N+ ++IE++ Sbjct: 124 YTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHYQDLLIDSI--NAAFNYSSDIIIEKF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ++G E T ++ L +I K+ FY Y KY ++ ++ P+++ KE++ +A Sbjct: 182 IEGREYTVSILNKKILPPVKIIT-KNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNIA 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GC+G R D + D K + LE+N PGMT S+ P A G SF EL+L Sbjct: 241 ETAWRTLGCKGCGRIDVILDNK-NKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELVLK 299 Query: 292 MVE 294 +++ Sbjct: 300 ILK 302 >gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] Length = 367 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 151/346 (43%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHL---- 49 + V+ GG S+E EVSL S K + L+ F V I +++ L H Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HGN GEDG +Q +L + + Sbjct: 66 RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ V P I + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVTNESEFKAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEQPLASP 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY ++ V PA + +++ +++ +A A++A+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG T +S++P++ G +++ L+ ++E Sbjct: 304 FLTE-DNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIE 348 >gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 334 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 165/320 (51%), Gaps = 27/320 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ERE+SL SG A A AL+DAG V IDV L H + D+AF LHG Sbjct: 6 IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 FGEDG VQ +LE+ IPYT SG+ AS ++MDK+ SK+ G+ L+ + Sbjct: 66 YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 P VIKP GGSS+G+ +IK+ + + + GD+ +E+YV G Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHV--GEALKCGDEAFVERYVSGR 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK----------------- 218 E T G++ SL + EI V DF+ Y KY+S + + + K Sbjct: 184 EFTIGILDSRSLPIIEICVAD-DFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVG 242 Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + +Y + Q LA AH AIGCRG SR D L D + LE+N PG T S+ P Sbjct: 243 FLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNK-NDFYILEVNTIPGFTEKSLLPMA 301 Query: 278 AAYAGYSFRELLLWMVEDAS 297 A A SF L +V+ AS Sbjct: 302 ARAADISFTSLCEKIVDLAS 321 >gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E] gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22] Length = 321 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ +D+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ + V + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFNF---TDYDFPYGEDIIIEQYIQGQELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI + K+ FY YE KY+ + HV PA +P ++YK++ + ++ I C Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str. 168] Length = 354 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 148/342 (43%), Gaps = 53/342 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46 GG S+E VSL + A AL F + I + V Sbjct: 2 YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ F +LHG GEDG +Q +LELL IPY +G+L Sbjct: 62 GGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVL 121 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+ + + + + P +KP G Sbjct: 122 ASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPANLG 181 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194 SS+GI + + + ++ + ++++E+ ++G E+ GV+G+ V Sbjct: 182 SSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIA 239 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTA-D 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 299 GEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 340 >gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 364 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 9 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDIEAL 68 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 69 KMSVAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 188 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + +++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 189 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTGEESDVIKRDAIIAFQSLDGAGLTRADFFLT 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] Length = 350 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRS--------------- 41 + ++ GG S E +VS+ S L + V I +DR Sbjct: 8 VGLVFGGRSGEHDVSIRSAATVVRGLRSGENTERYTVQPIYIDRDGRWWGTDLAEATLTS 67 Query: 42 -VGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 V L +P DL + VLHG GEDG +Q + +L P+ +G+L Sbjct: 68 EVAPELTTPRPPSGFQGFPEGCDAIDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135 SA+SMDK K SS G+ P + ++ ++ + ++ P +KP Sbjct: 128 SAVSMDKQAMKSAFSSAGLSQVPYVALHASELEDAKSRSALLDRIERELNYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ Q + L Q+++ +L++EQ V+ E+ C V+G +L+ + I Sbjct: 188 GSSVGISKVRSRQELEAGLEQAAAL--DPRLVVEQGVNAREVECAVLGRRTLEASVIGEV 245 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y YE KY++ ST ++PA +P + ++ A A A+G G+SR DF +D Sbjct: 246 RFDADWYDYETKYTAGRSTTLIPAPLPDPVRDRIREQALQACAAVGVHGMSRVDFFYDET 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S+FP + A +G + +L+ +++ A Sbjct: 306 NDQLWINEINTLPGFTAQSMFPMLWAASGVTLEQLVHKLIQTA 348 >gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977] gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977] Length = 323 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 164/323 (50%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S E EVSL S + AL F + + +L L Sbjct: 6 ILLVAGGRSGEHEVSLQSAQGVLEALP---FDADPAVIAKDGRWLLGRLALDAIEAGRAP 62 Query: 50 -------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D+ F +LHG +GEDG +Q E+L +PY + + ASA+ MDK S Sbjct: 63 RGDHPFPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLS 122 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 K++++ G+PV P ++ + + PP+ +KP + GSS+GI +++ + L + Sbjct: 123 KRILAQAGLPVVPWEVLRKGEPVFVG-LEPPFFVKPARAGSSVGIAKVRRYAELRPALDE 181 Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTH 213 ++ H D+++IEQ V G EL ++G+ + + + + ++FY Y KY++ + Sbjct: 182 --AFRHDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAEL 239 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA + + VQ +A A++ +G RG++R DF S +++ E+N PG TP S+ Sbjct: 240 DIPAALDPGTQETVQEMAVRAYRVLGVRGMARVDFFL-AESGEIYLNELNTIPGFTPFSM 298 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P++ +G + ELL +VE A Sbjct: 299 YPKLWQASGLPYPELLTRLVELA 321 >gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] Length = 356 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVS+ + + +A+ + V I + + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIGKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 302 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 164/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGL--KYDEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296 >gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 359 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 55/345 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51 + GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 2 VFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALIS 61 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F ++HG GEDG +Q +L + IP+ Sbjct: 62 LNHSNRNVALIPGQASQQLITTDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLK 134 SG++ SA+SMDK +K+++ G+ + P I + R + P IKP Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+G+ ++ + + + ++H ++L+E + G E+ C VMG+ + Sbjct: 182 QGSSVGVSKVRNEAEYQRAVALAFDFDH--KVLVESAIVGREIECAVMGNDHPQASLCGE 239 Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +FYSY+ KY + + ++PA I D+ ++ +A A QA+ C G++R D Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 P-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIELA 343 >gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] Length = 359 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+E EVSLS+ +A AL ++V I + Sbjct: 5 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64 Query: 50 -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 K D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 65 QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R ++ ++ P +KP Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194 GSS+GI + + + + + ++++EQ + E+ V+G+ +V+ Sbjct: 185 GSSVGISKATDREQLVKAI--EVALQYDRKIVVEQGIVAREVELAVLGNDYPEVSVPGEI 242 Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P +DFY Y+ KY ++ ++PA++P++ ++ LA A +AI G+ R+DF Sbjct: 243 KPVTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADFFVTAE 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 303 NN-VYINEVNTMPGFTPVSMYPLLWQHTNVSYPELIDRLITLA 344 >gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 366 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 153/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S E EVSL + A + A +++ +D+ + Sbjct: 10 VGLIYGGKSGEHEVSLQTAFAVSKAFNFDKYELLPFYIDKQGKWKVGEKLHAPFAALEEL 69 Query: 50 -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG GEDG +Q + E+ ++PY +G+ Sbjct: 70 KLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLPYVGAGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+ C + + + P +KP Sbjct: 130 LASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCFVKPANL 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193 GSS+GI + + + + ++ + ++++E++VD E+ GV+G+ V Sbjct: 190 GSSVGISKARNREELLSSVAL--AFRYDLKVIVEEFVDAREVEVGVLGNDEPLASVPGEI 247 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V ++Y Y+ KY S ++PA I ++ + ++ LA A +AI G+ R+DF Sbjct: 248 VSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCRADFFVRKS 307 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG TP S++P + G ++ LL ++E A Sbjct: 308 DHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIELA 350 >gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S+E +VS+ S + +A+ ++V I + + V Sbjct: 3 ITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKEDL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLTWDPSGKVTDGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETLNLPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGISKAENREELQNALAL--AYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA++P ++Y++ Q A +A+ +G G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL + A AL F++ I + + Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA+ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAERTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 361 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E +VSL + A AL F++ I + V Sbjct: 6 LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 66 KMSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI K + + ++ ++ ++++E+ + G E+ GV+G+ V Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + +L+ ++ A Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELINLA 347 >gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] Length = 510 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 44/342 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVS +S ++ + ++ I + ++ + Sbjct: 168 LGIVFGGQSGEHEVSRASACNVIEVIDKEKYDITLIGITKNGDWKVYTGDYKNIKDGSWE 227 Query: 47 ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D+ F VLHG GEDG +Q + EL+ PY G+LASA Sbjct: 228 QDTDKIHADFSIFHDPIIQDVDVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAG 287 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGII 142 MDK+ SK + S G+PV P + R D P IKP GSS+GI Sbjct: 288 MDKVASKMLFESAGIPVGPYVYFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGIS 347 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDF 199 + + ++ ++H ++++E +++ E+ C V+ G+ + V +F Sbjct: 348 KAHNREEFIDGVNEALRYDH--KIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEF 405 Query: 200 YSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 Y YE KYS +S V+PA+I + ++++ A A + I +SR DF + ++ Sbjct: 406 YDYEAKYSDNQDSKIVIPAQISDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIY 465 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG T +S++P+M G S+ EL+ +++ A+ R Sbjct: 466 INEINTMPGFTNISMYPKMWENMGVSYAELVEKLIQGAAVKR 507 >gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH] gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4] gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264] Length = 312 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 153/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ + +K ++P + H +++E+ ++ Sbjct: 132 ARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + D L + +I VP +FY Y KY + ++ +++P + E +R+A Sbjct: 190 GGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 363 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 55/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP-- 51 V+ GG S+E EVSL S K A++ F+V+ + +D+ +L P Sbjct: 2 GVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPAL 61 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F ++HG GEDG +Q +L + +P Sbjct: 62 IALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANMP 121 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKP 132 + SG++ SA SMDK +K+++ G+ + P I + R + + + P IKP Sbjct: 122 FVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANREQYGFEPVREKLGLPLFIKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ + + + + S++H ++L+E + G E+ C V+G+ + Sbjct: 182 ANQGSSVGVSKVCSAEEFTAAVELAFSFDH--KVLVESAIVGREIECAVLGNDQPKASLC 239 Query: 193 --AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 V +FYSY+ KY S + + V+PA + + ++ +A A + + C G++R D Sbjct: 240 GEVVISDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMARVDVF 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P K+ EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 LTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIELA 345 >gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243] gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344] gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b] gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1] gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247] gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98] gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14] gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91] gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9] gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210] gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894] gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112] gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215] gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243] gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344] gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b] gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1] gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229] gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247] gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] Length = 312 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ + +K ++P + H +++E+ ++ Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + D L + I VP +FY Y KY + ++ +++P + E +R+A Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] Length = 378 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 70/362 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE E+S S+ +A++ + V + Sbjct: 11 IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70 Query: 37 -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68 D D S V+ D+ F +LHG +GEDG + Sbjct: 71 CVTAGSTRVALTPGEGNLVELSYDGDPDASDSRVVGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121 Q + E+ + Y G+ +SA+SMDK +K V+++ G+ V LV D+ Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGRWELVTARQWDTDATACMDR 190 Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P+ + +++ NH ++++E G E+ CG Sbjct: 191 IEGLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASTSGREVECG 248 Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G + + EI +P+ +FY YE KY PA + + ++ A+ A Sbjct: 249 VLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDIVGLSCPADVAPEYADRIRATAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF FD + V E+N PG TP+S++P+M A +G S+ +LL ++ Sbjct: 309 FDALECEGLARVDFFFDEATDSVIINEVNTMPGFTPISMYPQMWAASGLSYSDLLNELLT 368 Query: 295 DA 296 +A Sbjct: 369 EA 370 >gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 380 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 19 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 79 RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 + SG+L SA++MDK +K+V+ G+ V P + NR T + P +K Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A+ + Sbjct: 199 PANQGSSVGVSQVRTAEQFAAALALALAYDH--KVLVEAAVTGREIECAVLGNATPQASV 256 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S + V+PA I + +Q++A A+QA+ C G++R D Sbjct: 257 CGEVVVHDAFYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVDV 316 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 317 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 363 >gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102] gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102] Length = 366 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 163/356 (45%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S +A A AL + +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIKSARAIAKALSVDENASKYEILPFYIQKDGRWLAGEAPQKVLET 65 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F VLHG GEDG +Q +L L Sbjct: 66 GSPLLEAEQSTSEGNLTSNPQVQTLSKWESPSQVAQVDIWFPVLHGPNGEDGTIQGLLTL 125 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122 +++P+ SG+L SA+ MDK+ K G+ + R + + + Sbjct: 126 MQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYKAITRAQVWSNPCVFPKLCDEIEA 185 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP GSS+GI ++ Q + L ++S++ +L++E V E+ C V+ Sbjct: 186 ALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAASYDR--RLVVEAGVVAREVECAVL 243 Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ + + SDFY YE KY+ + ++PA IP I +++Q +A A A+ Sbjct: 244 GNDQPQASVVGEISYDSDFYDYETKYTEDRADLLIPAPIPDAIARQIQDMALQAFAAVDA 303 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + +++V EIN PG T S++P++ A++G SF EL+ +++ A Sbjct: 304 AGLARVDFFYVEATQEVLINEINTLPGFTATSMYPQLWAHSGVSFPELVDRLIQLA 359 >gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 300 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGGISSERE+SL SG+A +A++ + ++ I +D ++ D AF LHG Sbjct: 3 VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ++L+ L IPY+ G + SA+ MDK +K+V+ S G+ V Sbjct: 63 QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTVRAIQDID 122 Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L+ P+ +KP GGSS+ + K + + ++++ + +++IE+YV G E+ Sbjct: 123 YALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAVVEAL--KYDTEVMIEEYVKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ + + I P +F+ + KY + ++ ++ ++ K V+ +A A Sbjct: 181 TCSIINRKTYPIVAIK-PTGEFFDFTSKYQDNGAEEIV-VQLEENLSKTVEAMAIACWDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + R D + + + LE+N PGMT S+ P+ A AG S+ +L+ ++E++ Sbjct: 239 LKFSAYVRVDMII--KNNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295 >gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] Length = 367 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S+E EVSL S K + L+ F V I +++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65 Query: 45 -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFYAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEQPLASP 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY ++ V PA + + ++++++A A+QA+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 304 FLT-DTNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348 >gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] Length = 298 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 10/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG+SSER+VS+ +G +AL GF +DVD S+ L KPD + LH Sbjct: 6 IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE + IPY G+ ASA+S DK+ +K+++ S +P + Sbjct: 66 GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTADYF----EYKN 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 Q P V+KP + GS++G+ ++ +D+ + + + +++++E+++ G ELT Sbjct: 122 EQSSPFYPCVVKPAREGSTIGVTIVYEDKEFIPAI--EDAKKYDNKIIVERFIKGKELTI 179 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D L + I PK FY Y KY+ + ++ + + V+++A A++ +G Sbjct: 180 SIIDDLVLPIIWIK-PKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEVVG 238 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 C G SR D ++D LEIN PGMT S+ P AA G ++ EL+ + Sbjct: 239 CEGASRVDIIYD--GDIPNVLEINTLPGMTETSLLPNAAAKYGIAYDELVEML 289 >gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] Length = 325 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 155/297 (52%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL+ AG D+ + + D F LHG Sbjct: 25 VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P + Sbjct: 85 RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAE 144 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+GI + + ++ D +L+EQ+++G E T Sbjct: 145 GIVAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARL--DDLVLVEQWIEGPEFT 202 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L ++ + FY Y+ KY + ++ + +P + D +Q LA A + + Sbjct: 203 VSLLQDKALPAIGLSTDHA-FYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRVL 261 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCR R D + D + + LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 262 GCRTWGRVDIMQDRA-GEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317 >gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 305 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 166/303 (54%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ + Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W+ ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDRF--VMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I P S+F+ Y KY + ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADE-QVIELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E + Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296 Query: 298 CLR 300 R Sbjct: 297 SER 299 >gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 363 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R + E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355 >gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827] gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 355 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 100/346 (28%), Positives = 159/346 (45%), Gaps = 50/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG SSE VS S + + L+ F+V + + R V+ Sbjct: 8 VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 A D+ F +LHG +GEDG VQ +LEL ++PY G+ Sbjct: 68 MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLG 140 LASA +MDK +K ++ + G+ V ++ R + + P +KP + GSS+G Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVTEIAV 194 I + + D + + +++IE V G E+ CGV+ +ASL V Sbjct: 188 ITKVTDWADL--DAAIAFARQTDPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245 Query: 195 PKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 D+Y ++ KY +PAK+ D + ++ LA A +A+ C+G++R DF Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDFFVTE- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG TP+S++P M G S+R+LL +VE A Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETAIAR 350 >gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 305 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 166/303 (54%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ + Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W+ ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDRF--VMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I P S+F+ Y KY + ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADE-QVIELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E + Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296 Query: 298 CLR 300 R Sbjct: 297 SER 299 >gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C] gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C] Length = 385 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 157/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +++ + ++V I + L P Sbjct: 19 VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADAPERMAIADRQ 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 LPSVEALAESPDGTVVLPVDPASREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL IPY G+L+SA+ DK K+V +S G+ V P + + ++ Sbjct: 139 LLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYVTIRPREWEADQAAATAKVL 198 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + D + LD + H ++++E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDASGLDAAIREARRHDPKVIVEALLRGREIE 256 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS V DFY +E KY ++T ++PA + + EVQ+LA Sbjct: 257 CGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKY-IDSATGLVPAPLTPEQTAEVQKLAID 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P M +G + EL+ ++ Sbjct: 316 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGIEYPELVDRLI 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] Length = 1029 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 163/299 (54%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSER +SL S +A A AL D G +V++ID+ ++ DL F VLHG Sbjct: 732 IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISK-DIDLVFPVLHG 790 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ++E PY I +S L +DK + + + G+PVC S+++ + Sbjct: 791 EFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEEI 850 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I+ P V+KP + GSS+ + +++K+ + + ++ + D +L+E + GIE T G Sbjct: 851 SQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDL--AFENDDTVLVESFFKGIECTVG 908 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS--LNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237 ++ +L V EI P+ F+ Y+ KY+ + + P +IP D+ + +++ + + Sbjct: 909 LIDGKALSVVEIIPPE-GFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKV 967 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + R + R D +++P S K LE N PG T S+ P+ A G SF EL + + A Sbjct: 968 LKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKA 1026 >gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_06A21] Length = 359 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 169/349 (48%), Gaps = 53/349 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG S+E EVS+ S ++ +A++ ++ + + R +LA Sbjct: 3 LLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVDDM 62 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F +LHG FGEDG +Q +LEL+ + Y +G Sbjct: 63 SLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL-------ISPPYVIKPLK 134 + AS++ MDK +K + ++ G+ ++ NR+ D++ + + P +KP Sbjct: 123 VAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIA 193 GSS+G+ K S+ L ++ + ++L+E+ V D E+ C V+G+ S + I Sbjct: 183 MGSSVGVSKAKDAASLTKALDIAA--QYDVKMLVEESVEDCHEVECAVLGNDSPRASIIG 240 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +DFY Y+ KY S ++PA + + VQ +A A Q+I C G++R DF Sbjct: 241 EIIPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFFVR 300 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +F EIN PG TP+S++P + +G ++ EL+ +++ A R Sbjct: 301 RADDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQLAVERR 349 >gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] Length = 358 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V I + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 367 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 165/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLI---SPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T D + LI P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ L + ++++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSADQFAAALALALAYDY--KVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY+ KY S + V+PA I + +Q++A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLIARLIELA 350 >gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 320 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P ++ Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ +LA Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 257 AFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9] gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum SS9] Length = 308 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 169/301 (56%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ A+E G + ID ++ K D F LHG Sbjct: 7 IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ Sbjct: 67 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126 Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + +S P V+KP+ G S+G+ + + + ++ +++ + D +LIE ++ G Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVI--TAFEYDDDILIESFIAGR 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ L + +I F+ Y+ K+ S ++T+ P+ + + +++Q LA A+ Sbjct: 185 EYTCAVLNGKPLPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALALNAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG R D + D VF +E+N PGMT S+FP A AG SF +++ +++ Sbjct: 243 NALGCRGWGRVDTILDES-GDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDS 301 Query: 296 A 296 A Sbjct: 302 A 302 >gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK] gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 367 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V+ + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+LASA MDK +K++++S G+PV +++ + + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + + H +++IE V G EL CGV+ D L Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHL 244 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY +E KY + +PAK+ D+ + ++ L+ A AI Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 362 >gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 363 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNNEAQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALESADEAR 355 >gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7] Length = 363 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G DA + V Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R + E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355 >gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] Length = 320 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 165/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +LASALSMDK+R+KQV + G+P ++ Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ +LA Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 257 AFHGVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803] gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 158/344 (45%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVL---------- 46 + +L GG S E EVS+ S +A A AL ++VS + ++ + Sbjct: 3 VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + ++ F +LHG GEDG VQ + L+++PY SG+L S Sbjct: 63 GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135 + MDK+ K V G+P + V R + S + + P +KP Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL--DVTEI 192 GSS+GI ++ + L ++S++ ++++E + E+ C V+G+ + V Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDR--RIIVEAGLTDIREVECAVLGNENPQASVVGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ S +PA +P + ++Q +A A +A+ G+ R DF + P Sbjct: 241 ITYDSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQP 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T S++PE+ +G F L+ +++ A Sbjct: 301 TTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLA 344 >gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 312 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 170/307 (55%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E E+S +G A AL+ G+ ++++ + + + FN LH Sbjct: 6 IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G FGEDG++Q L++L IPYT SG+LA+A++MDK SK+V + G+ S R+ M Sbjct: 66 GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125 Query: 119 -----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K GSS+G+ +++ ++ L + ++++ D++L+E+++ Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKE--AFSYNDEVLVEEFIR 183 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ + + EI S Y YE KY+ STH++PA++ + KE+Q Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITT-TSGRYDYESKYTKGASTHIIPARVSAEKTKEIQD 242 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A GC+G++R D + + +E+N PGMT +S+ P+ G F EL Sbjct: 243 LAIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELC 301 Query: 290 LWMVEDA 296 ++E A Sbjct: 302 ERILEMA 308 >gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] Length = 355 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A+L GG SSE EVS SG A ++ + + I + + Sbjct: 7 VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 S G + + D+ F VLHG +GEDG Q I EL +IPY Sbjct: 67 GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 +L+SA +MDK +K V++ CG+P R +D + +S P +KP Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS G+ + L +++ +++ E+ + G EL C ++G + + + Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAAA--QDCKVIAEETIVGRELECALLGGWDAEASGVGE 244 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY Y+ KY S S V+ +P +E++ +A +A+ CRG+SR+DF + Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + +V + EIN PG T +S++P++ AG EL+ ++E A+ Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349 >gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147] gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786] Length = 312 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 153/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFARAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P + H +++E+ ++ Sbjct: 132 ARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + D L + +I VP +FY Y KY + ++ +++P + ++R+A Sbjct: 190 GGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIADDTQYLIPCGLDAAKEAALKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] Length = 372 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 169/353 (47%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S E E+SL S ++ A++ + V ++ + + + Sbjct: 8 VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 A D+ F VLHG FGEDG +Q + EL +I Y SG+L Sbjct: 68 SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137 S+ MDK K++ + G+P+ P + + R + + + P +KP GS Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEI 192 S+GI +K + + + ++S++ +++IEQ V G EL V+G+ + + + + Sbjct: 188 SVGISKVKSRADLAVAMDLAASFDR--KIVIEQGVGGPGVKPRELEVAVLGNDTPEASVV 245 Query: 193 A--VPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +FY YE KY + ++PAK+ K+++ +A A +A C G++R D Sbjct: 246 GEIVPAKEFYDYEAKYELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLARVD 305 Query: 248 FLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 FL P S+ ++ EIN PG T +S++P++ +G ++ +L+ ++E A Sbjct: 306 FLMAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIELA 358 >gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] Length = 343 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 44/341 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S E EVS+ S ++ + +KV + + V Sbjct: 6 LGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINE 65 Query: 50 -------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 K D+ F VLHG +GEDG +Q L+ L+IPY + +L+SA Sbjct: 66 VKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAAG 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK K + S +P + + +++ + P +KP GSS+G+ Sbjct: 126 MDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + L + + +L+ E++V+G E+ C V+G+ ++ + +P +F Sbjct: 186 SKVHSPGEVKKAL--EKGFYYDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPGKEF 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY + V+PA + + + + LA A +AI G +R DF + + Sbjct: 244 YDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFL-KNNGVLLV 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG T S++P++ G ++ +L+ ++E A R Sbjct: 303 NEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343 >gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] Length = 332 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL++G+ S L+ ++V I++D L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 +GEDG VQ L+ L IPYT S +L+S++ MDK SK+++ G+ ++V Sbjct: 63 KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W+ ++IEQ++DG E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQWDRA--VMIEQFIDGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I P S+F+ Y KY + ++P ++ K V A ++A Sbjct: 181 TCPILNGEMLPIVSIK-PNSEFFDYTSKYVEGEADE-QVIELPPELRKAVNAAAIQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + LE+N PG+T S+ P A AG+SF LL ++E + Sbjct: 239 LKCSVYARIDIIL--KDNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIEFSL 296 Query: 298 CLR 300 R Sbjct: 297 TER 299 >gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] Length = 310 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 114/298 (38%), Positives = 160/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSERE+SL G+A +AL AG +D D + L AF +LH Sbjct: 10 VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116 G GEDG +QAIL+ L IPYT S +LA AL+MDK+ K+V S G+PV +LV RF Sbjct: 70 GRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRF 129 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + L +VIKP GSS+G+ +K + + + +++ E ++ G E Sbjct: 130 ETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQL--AAAIPFAGGARAKIMAEPWIVGRE 187 Query: 177 LTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT G++ D L EI DFY Y+ KY + N+ ++ PA I + + +AF A Sbjct: 188 LTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFAAF 247 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 QAIG RG R D + D +R + LEIN+ PGMT S+ P A G F L+ ++ Sbjct: 248 QAIGARGWGRVDMIVDAQNR-PYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSIL 304 >gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] Length = 358 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium] gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082] Length = 358 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1] gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1] Length = 304 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P ++ Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 125 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ +LA Sbjct: 183 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 241 AFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300 Query: 294 ED 295 E Sbjct: 301 EQ 302 >gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909] Length = 357 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthase A gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 160/353 (45%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG S E EVSL S + L+ F+V + +D++ L+ Sbjct: 7 VVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAAL 66 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F V+HG EDG VQ +LEL ++ Sbjct: 67 PILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADV 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128 Y SG+LASA+SMDK +K++ G+PV P ++ R + +S P Sbjct: 127 AYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPV 186 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI +K ++ L ++ + ++L++Q +D E+ V+ D +L Sbjct: 187 FVKPCNMGSSVGIHKVKTQDALEAALDD--AFRYDVKVLVQQGIDAREIEVAVLEDETLF 244 Query: 189 VTEIAV----PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +FYSYE KY + V PA++ + V+ LA A+ C G Sbjct: 245 ASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGF 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF D + + + EIN PG T +S++P+M +G + ELL +V+ A Sbjct: 305 ARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357 >gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] Length = 356 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + +L GG S+E EVSLS+ A A++ ++V I + + + Sbjct: 5 IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64 Query: 43 GLVLAHLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L KP D+ +LHG GEDG VQ +LE+L IPY +G+LAS Sbjct: 65 QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138 + MDK+ KQ+ G+ P + R D+ + + P +KP GSS Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFVKPANLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196 +GI + + + + ++ ++ +++IEQ V E+ GV+G+ V P Sbjct: 185 VGISKADNREELIVAVKEALKFDR--KIVIEQGVVAREIEVGVLGNDEPACSVAGEIKPL 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY N+ ++PA++ +Y ++ A A + + C G+ R+DF + + Sbjct: 243 KAFYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADFFVTA-NNE 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 302 ILINEVNTLPGFTPFSMFPLLWEHTGVPYPELIERLITLA 341 >gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 166/295 (56%), Gaps = 13/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRVPAWEMARPADIA 128 Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L+SPP V+KP++ GSSLG+ ++ ++ + L +++ H DQ+++EQ+V G Sbjct: 129 EPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186 Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T GV+G+ +L V EI + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 AH+ + +G SR+D + ++ LE N PGMTP S+FP+ AA G F Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFG 299 >gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato Max13] gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40] gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] Length = 363 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ +G S+ EL+ ++ E A R Sbjct: 303 TGA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355 >gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] Length = 322 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 162/318 (50%), Gaps = 27/318 (8%) Query: 3 VLMGGISSEREVSLSSGKACASA-----------------LEDAGFKVSQIDV----DRS 41 +L GG E EVSLSS + +A L + ++ + V Sbjct: 5 LLAGGPPGEHEVSLSSARGVLAAMPHPTELVVIAKDGRWLLGEDAYEALRAGVAEQGTHP 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D+ F +LHG GEDG++Q L+LL PY +G+ +SAL MDK K+V+ Sbjct: 65 FPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKRVLR 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 G+PV P + + + Q PPY +KP GSS+GI +K DQ L ++ +W Sbjct: 125 QAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAFAW- 183 Query: 162 HGDQLLIEQYVDG-IELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 D++L+EQ ++G EL ++G+ A V +S+FY YE KY+ + LPA Sbjct: 184 -DDKVLVEQGIEGVRELEVALLGNIHAEASVVGEITYQSEFYDYETKYTEGKAQLHLPAP 242 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IP ++ E++ A A++ +G RG++R DF P +++ E N PG TP S++P++ Sbjct: 243 IPPELSDEIRATALEAYRILGVRGMARVDFFLSPQ-GELYLNEFNTIPGFTPTSMYPKLW 301 Query: 279 AYAGYSFRELLLWMVEDA 296 G ++ +LL +V A Sbjct: 302 QATGLAYPDLLDRLVRLA 319 >gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC 13177] gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] Length = 312 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + P +KP GSS+ + +K ++P + H +++E+ ++ Sbjct: 132 ARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + D L + I VP +FY Y KY + ++ +++P + E +R+A Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046] Length = 357 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 48/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S+E EVSLS+ KA AL+ F V I + + Sbjct: 5 IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64 Query: 48 ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F +LHG GEDG VQ LE+L IPY +G+L Sbjct: 65 QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGS 137 SA MDK+ KQ+ +P P R + + + P +KP GS Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--P 195 S+GI + + + + +++IEQ V E+ V+G+ + +V+ P Sbjct: 185 SVGISKATNAAELEKAV--QFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIKP 242 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++FY Y+ KY ++ ++PA + D+Y + +A A +AI G+ R+DF + Sbjct: 243 MTEFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADFFVTE-NN 301 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG TPVS++P + + ++ +L+ +++ A Sbjct: 302 EIYINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342 >gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] Length = 367 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 165/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V+ + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+LASA MDK +K++++S G+PV +++ + + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + + H +++IE V G EL CGV+ D L Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHL 244 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY +E KY + +PAK+ D+ + ++ L+ A AI Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G ++ LL MVE A Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYQTLLATMVETALAR 362 >gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] Length = 356 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 47/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG SSE VS + + +AL+ + V I + V + Sbjct: 14 LAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLP 73 Query: 51 ----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D F +LHG +GEDG VQ +LE+ +I Y +G+LASA+SMDK Sbjct: 74 AVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKP 133 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKK 146 +K V S+ G+P P + + + + + + P +KP + GSS G+ +++ Sbjct: 134 FTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVES 193 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA--------SLDVTEIAVPKS 197 + ++ + ++ ++++E + G EL CGV+ ++T A Sbjct: 194 WDDLDAAVVAARAF--DPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDH 251 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY +E KY S +++PA IP+ + + ++ A A +A+GC G++R DF + Sbjct: 252 DFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLT--DDGL 309 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG TP S+FP + +G + +L+ +V A Sbjct: 310 VVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348 >gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] Length = 401 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 158/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SAL+ + V I + R L P Sbjct: 35 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 95 VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 LEL +PY +G+LASA+ DK K+V +S G+PV P +V +S Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + D LD + H + L+E + G E+ Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGITKV--DDPSGLDEAIEEARRHDPKFLVESLLRGREIE 272 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EV+RLA Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSAAGLVPAPLTEEQTAEVRRLAVD 331 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 332 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390 Query: 294 EDA 296 + A Sbjct: 391 QAA 393 >gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] Length = 304 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ +A+E G + ID ++ K D F LHG Sbjct: 3 IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ Sbjct: 63 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122 Query: 118 MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L+S P V+KP+ G S+G+ + + + ++ +++ + D +LIE ++ G Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVI--TAFEYDDDILIESFIAGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ +L + +I F+ Y+ K+ S ++T+ P+ + + +++Q LA A+ Sbjct: 181 EYTCAVLNGEALPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALNAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG R D + D VF +E+N PGMT S+FP A AG SF +++ +++ Sbjct: 239 NALGCRGWGRVDTILDES-GDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLLDS 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 355 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 149/343 (43%), Gaps = 53/343 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------ 45 + GG S+E VSL + A AL+ F + I + V Sbjct: 2 VYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQFE 61 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG +Q +LELL +PY +G+ Sbjct: 62 QTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGV 121 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LAS+ MDK+ K + + G+ + + T + + P +KP Sbjct: 122 LASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193 GSS+GI + + + ++ + ++++E+ V G E+ GV+G+ V Sbjct: 182 GSSVGISKCRSREELDQAF--ELAFQYDRKIVVEEGVIGREIELGVLGNDEPVCSVAGEI 239 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 PK DFY Y+ KY ++ ++PA + D Y+ ++ +A A QAI G+ R+DF Sbjct: 240 APKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLTNE 299 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R V E+N PG TP S+FP + +G + EL+ +V A Sbjct: 300 GR-VLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 341 >gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A] gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A] gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 357 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49] Length = 313 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L + AF LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ ++ +K L + + H +++E+ ++ Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDRIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSVGISYSELVVKVL 307 >gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 352 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S ++ A + V +D++ +L Sbjct: 6 VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +P ++ F +LHG GEDG +Q +L L+ + + SG+L S Sbjct: 66 GQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135 L MDK+ K ++ G+P + R + S I P IKP Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + Q + L ++S++ ++++E V E+ C V+G+ + + + Sbjct: 186 GSSVGISKARNQQELEAALDSAASYDR--RIIVEAGVTAREIECAVLGNDNPQASLVGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ S+ V+PA IP I +V+ +A A +A+ G+SR DF + Sbjct: 244 TFDSDFYDYETKYTDGRSSMVIPANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEK 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T S++P++ G F +L+ +V+ A Sbjct: 304 TGEVLINEINTLPGFTNFSMYPQLWKATGLEFDQLVDKLVQLA 346 >gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] Length = 367 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S+E EVSL S K + L+ + F V I +++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65 Query: 45 -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + D + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L ++ ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFNAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEHPLASP 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY ++ V PA + DI +++ +A A+QA+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 304 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348 >gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 363 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ +L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS+G+ + + L ++H +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEAQVSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V +FY+Y+ KY + + + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300 R++ E+N PG T +S++P++ G S+ EL+ ++ E A R Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLIVLALERADEAR 355 >gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] Length = 362 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] Length = 324 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 11/297 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFNVL 58 +L+GG SSER +SL SG+ AL+ AG V+ +DV R L D AF +L Sbjct: 12 LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +QA+LELL IPYT + + SA+ MDK+ K++ G+P P +V Sbjct: 72 HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131 Query: 119 DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + L + P ++KP+ GSS+G+ + + + +++ + Q+++E+Y+ G E Sbjct: 132 AHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARY---GQVMMERYIRGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++G +L V ++ P DFY ++ KY + ++ + +P+ + + +Q +A A + Sbjct: 189 YTVSLLGGRALPVIRLSTPH-DFYDFDAKYLANDTEYTIPSGLSAEEESAMQAIALKAFE 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 IG G R DF+ D + + +E+N PGMT S+ P A G EL L ++ Sbjct: 248 QIGGSGWGRVDFMRDEHGQN-WLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGIL 303 >gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2] gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2] Length = 309 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+L GGISSEREVSL+ G AL+ + + + D + ++ + D+A +LH Sbjct: 6 LALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L+LL+IPY +G+L SA++M+K+ SK++ G+P + +R Sbjct: 66 GPFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKV 125 Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H + P V+KP+ GSS+G+ ++K+++++ L + + +L+E YV G+ Sbjct: 126 DLHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAAL--EKGFEQDEAVLLEAYVKGL 183 Query: 176 ELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELTC V+G+ ++ V EI + +F+ Y+ KY + + + PA+I + K VQ A Sbjct: 184 ELTCAVVGNQEIEAMPVIEILPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAHA 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+ +G SR+D + R V LE N PGMT S+ P A AGYSF +LL Sbjct: 244 IEAHKALFLKGYSRTDMIL--SDRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLDR 301 Query: 292 MVEDA 296 ++E A Sbjct: 302 LIELA 306 >gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] Length = 324 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 95/320 (29%), Positives = 172/320 (53%), Gaps = 27/320 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASA---------LEDAGFKVS------QIDVDRS---- 41 + ++ GG S E EVSL+S + A + G ++ ++ R+ Sbjct: 6 ILLIAGGRSGEHEVSLASARGVLEAMPHPTDLAVIAKDGRWLTGTAARAALEAGRAQRGE 65 Query: 42 --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ + D+AF +LHG +GEDG +Q LE+L +PY +G+ A+AL MDK +K+ Sbjct: 66 HPFPPPLSWHRYDVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKRT 125 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 ++ G+PV P + + R + SPPY +KP GSS+GI ++ +++ L ++ Sbjct: 126 LAHAGIPVVPWVSLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAFR 185 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLP 216 W D++L+EQ ++G EL ++G+ + + + + + S+FY Y KY+ + ++P Sbjct: 186 W--DDRVLVEQGLEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLIP 243 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + D+ + +Q +A A++ +G RG++R DF P ++ E+N PG TP S++P+ Sbjct: 244 APVDADVARRLQEVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYPK 302 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + +G + LL +V A Sbjct: 303 LWQASGLEYEALLERLVRLA 322 >gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 381 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E EVSLS+ +A AL ++V I + Sbjct: 27 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++ D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 87 QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R ++ ++ P +KP Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194 GSS+GI + + + + ++++EQ + E+ V+G+ +V+ Sbjct: 207 GSSVGISKATSRDELKKAI--EVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEI 264 Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y+ KY+ ++ ++PA++P + ++ LA A +AI G+ R+DF Sbjct: 265 KPVTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRADFFVTA- 323 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 324 DHSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 366 >gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 302 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 164/299 (54%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P +KP GGSS+ + K + I +++ + ++++IE +V G E+ Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYYEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] Length = 289 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 154/291 (52%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125 L +PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ + Sbjct: 62 LGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFETLSPDELAARVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + L++ ++ H +LIE+++ G E T G++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVE--AFRHDTDVLIEKWLSGPEFTVGILGDD 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I VP FY YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQVP-GVFYDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILTLA 288 >gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] Length = 362 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 367 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 45 ---------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T + + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ L + ++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALAL--DYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSYE KY S + V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350 >gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 386 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 158/354 (44%), Gaps = 61/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG +SE VSL + A++ + ++V I + + VLA + Sbjct: 28 VAVVFGGRNSEHSVSLLGAGSVLEAIDQSKYEVIPIGIAQDGRWVLASERQRYAIESGRL 87 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F +LHG FGEDG +Q +LE+ + Sbjct: 88 PTVDETGDALAIPTHSASLVALRPGEIPRALGEVDVVFPLLHGPFGEDGTIQGLLEMAGV 147 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYV 129 Y SG+LASA+ MDK K V+ + G+PV P ++V + P Sbjct: 148 RYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVF 207 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183 +KP + GSS GI + + + ++ H ++L+E + G E+ C V+ Sbjct: 208 VKPARAGSSQGITKVHDAAGLEEAI--EAAREHDPKVLVEAAIPGREVECAVLESLGDSP 265 Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +AS+ + +FY +E KY PA +P + + V+ LA A +A+GC G Sbjct: 266 PEASVVGEVVVAEGHEFYDFEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEG 325 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF + P ++ EIN PG T S+ P++ A G + +L+ +++ A Sbjct: 326 LARVDFFYTPS-GELIVNEINTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQLA 378 >gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] Length = 385 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITKDGRWALTADEPERMAITERR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESSEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWEQNESAARKKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + +H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSGLDEAIAEAQSHDPKILVEAALRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ ++PA + + EVQ+LA Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVQKLAVD 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P+M +G ++ EL+ ++ Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPQMWEKSGIAYPELVDRLI 374 Query: 294 EDA 296 E A Sbjct: 375 EAA 377 >gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] Length = 307 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+ + AL + V +D V D AFN LHG Sbjct: 11 IAVLLGGTSAERDVSLLSGRTVSDALRGLDYSVRDVDP-ADADWVAQLQGVDYAFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L I YT SG+L SAL+MDK RSKQ+ G+ +++ T D Sbjct: 70 PGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADT-DW 128 Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +I +KP GSS+G+ +S+ +++++ G ++ E++++G E T Sbjct: 129 QAVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + V +++FY Y+ KY S ++++ P+ + +V +A A +++ Sbjct: 187 VAILGDEALPSIRM-VTENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRSL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G R D + D + F LE+N PGMT S+ P A AG L+ ++ AS Sbjct: 246 GCAGWGRVDTMRD-SDGRFFVLEVNTIPGMTSHSLVPMAARQAGMEVPALVERILTLAS 303 >gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 367 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 45 ---------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T + + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ L + ++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALAL--DYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSYE KY S + V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350 >gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] Length = 307 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 155/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ER+VSL SG A AL G ID+ +V + D AF VLHG Sbjct: 12 VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG +QA+L+++ IPYT S +SAL+M+K+ SKQ+ GV I+++ T + Sbjct: 72 GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + ++KP GSS+G+ + + + + + +L E+ + G E T Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAY--AHAKKYDAIVLAEKVLVGDEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + ++ + FY Y+ KY + ++ ++ P + L+ +EV LA A ++ Sbjct: 190 VAILNGQVLPIIKLETDRV-FYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G R D + D LE+N PGMT S+ P A AGYSF L+ +++ Sbjct: 249 QCEGWGRVDIMRDENGG-FHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLVGEILK 303 >gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843] gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 352 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S ++ A + V +D++ +L Sbjct: 6 VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +P ++ F +LHG GEDG +Q +L L+ + + SG+L S Sbjct: 66 GQPLAIESNIKVNIWQFPPEVREMEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135 L MDK+ K ++ G+P + R + S I P IKP Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + Q + L ++S++ ++++E V E+ C V+G+ + + + Sbjct: 186 GSSVGISKARNRQELEAALDSAASYDR--RIIVEAGVTAREIECAVLGNDNPQASLVGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ S+ V+PA IP I +V+ +A A +A+ G+SR DF + Sbjct: 244 TFDSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVEN 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T S++P++ G F +L+ +V+ A Sbjct: 304 TGEVLINEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLA 346 >gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a] gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a] Length = 367 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51 +A+L GG S+E +S S AL+ + V+ + +D S V L P Sbjct: 10 LALLFGGRSTEHAISCVSAGGVLRALDPDVYDVALVGIDPSGRWVFMPDAKALTPADGAL 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +LE Sbjct: 70 PQVTASRGTSVVLAPDPTAARWYPRDGGESIQGPLGDVDVVFPLLHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130 + +PY SG+ ASA +MDK K ++ + G+PV P +V Q + P + Sbjct: 130 MAGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYAVVRAGQTLSEADQDRLGLPVFV 189 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183 KP +GGSS+GI + + + + + + ++L+E + G E+ CGV+G Sbjct: 190 KPARGGSSIGISRVDAWADLDTAVKTARA--NDPKVLVEAAITGREIECGVLGRLDGPGA 247 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 AS+ + FY +E KY S + +PA++ V+++A A +A+ C G+ Sbjct: 248 QASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSPSALARVRQVAVAAFEALDCAGL 307 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R D P V E+N PG TP S+FP M A +G ++ +L+ +V A Sbjct: 308 ARVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAASGITYPDLVDRLVRLA 359 >gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 160/345 (46%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GG S+E VSL S A + L+ A + + + + R + Sbjct: 6 IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65 Query: 46 ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78 LA P D AF VLHG GEDG VQ +LEL IP Sbjct: 66 RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPL 133 G L SA+ MDK + ++ +S G+ V S L + D +S P +KP Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + +P + +++ H D+++IE+ V G E+ C V+G +L V + Sbjct: 186 RSGSSFGITRVTDRADLPQAV--AAALEHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + F+ Y KY L S +PA+I + +Q+ A A++A+GC G +R+DF F Sbjct: 244 EIELTQGFFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFFT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++ + EIN PG T S +P M A G F L+ +VE A Sbjct: 304 P-EGEIVFNEINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347 >gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] Length = 364 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 58/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S A A AL + V I + + VLA Sbjct: 8 VGLVFGGRSGEHEVSIRSAGAIAQALSIDENQTKYAVVPILIHKDGSWESGQTAQQVLAS 67 Query: 49 LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D+ F V+HG GEDG +Q + E+LE+P Sbjct: 68 GKPAMQDEGPIGELPSAAKPIKRLPDLSALGHIDIWFPVIHGPNGEDGTLQGLFEVLEVP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISP 126 Y G+L S+L MDK+ SK + G+P V+R + S + Sbjct: 128 YVGCGVLGSSLGMDKLASKSAFAQAGLPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGY 187 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI Q + L ++S++ ++++E V E+ C ++G+ + Sbjct: 188 PCFVKPANLGSSVGISKATNRQELETALDLAASYDR--RVIVETGVVAREIECSILGNDN 245 Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + + + +DFY Y KY+ + ++P+ + + +Q +A A QAI G++ Sbjct: 246 PKASVLGETRFSTDFYDYAAKYTEGGAELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLA 305 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R DF + + ++ EIN PG T S++P M +G F +L+ +++ Sbjct: 306 RVDFFYIEKTDQILINEINTMPGFTATSMYPMMWEASGIKFSDLVDKLIQ 355 >gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 337 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 182/318 (57%), Gaps = 23/318 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SG+A AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQSSSWNHGDQ------------- 165 ++ I PYV+KP+ GSS+G+ ++ + + L + + + Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184 Query: 166 ------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +++E+Y+ GIEL V+ D ++ EI PK+ FY YE KY+ + H+ PA+I Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEI 243 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P +IYK A HQ +GC+ ISRSDF ++P + + LEIN PG T +S+ PE+A Sbjct: 244 PDNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAK 303 Query: 280 -YAGYSFRELLLWMVEDA 296 G +F EL+ ++ED+ Sbjct: 304 LAKGINFNELVKIIIEDS 321 >gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 377 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 63/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S + +AL AG+ V I + R VL P Sbjct: 17 VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+AF VLHG FGEDG +Q + E+ Sbjct: 77 LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 IPY SG+ ASA +MDK K + G+P P ++V +S + Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP +GGSS+ + + K + D + ++L+E+ +DG E+ GV+ D Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADV--DEAIERAREVDPKVLVERAIDGREIEVGVLDDVH 254 Query: 187 LDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +++VP +FY +E KY + +PA +P + + V R A +A++A+GC Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DF + +VF E+N PG TP S+FP + G + L+ ++V+ A R Sbjct: 315 EGLARVDFFVTA-TGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQLALRRR 373 >gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379] gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 391 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 158/366 (43%), Gaps = 71/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 25 VAVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRK 84 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 85 VPDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 144 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL +PY +G+LASA+ DK K+V S G+PV P +V D+ Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIV 204 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P IKP +GGSS+GI + D LD + H + L+E + G E+ Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKV--DDLSGLDAAIEEARRHDPKFLVESLLRGREIE 262 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++T ++PA + + EVQRLA Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSATGLVPAPLTGEQTAEVQRLAVA 321 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 322 AFDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLI 380 Query: 294 EDASCL 299 + A Sbjct: 381 QAALTR 386 >gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 285 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 34/305 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 G++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 R---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 103 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 104 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 161 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 162 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 220 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 221 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279 Query: 292 MVEDA 296 ++E A Sbjct: 280 ILELA 284 >gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 356 Score = 308 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITNEIESTEDL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RIDNIPTGEISQLLSKGSSGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +S P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEDELKSGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341 >gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] Length = 358 Score = 308 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + V+ GG S E +VSL S + + F ++ I + Sbjct: 7 VGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEWI 66 Query: 39 --------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D S+ D+ F VLHG GEDG +Q + E+++ PY +LAS++ Sbjct: 67 NDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSSL 139 MDK +K++ S G+PV +LV +++ + + P +KP+ GSS+ Sbjct: 127 MDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197 GI K S+ LL++ + ++L+E+ ++ E+ V+G++ + + V Sbjct: 187 GISKAKDRDSLKEALLKAVKF--DTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSCK 244 Query: 198 DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY YE KY S + + + PAKI I ++++ A A +A+G G+SR DF D S+ Sbjct: 245 EFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKD 304 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ E N PG T +S++ +M Y G + +L+ +++ Sbjct: 305 IYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLID 342 >gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331] Length = 394 Score = 308 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 109/367 (29%), Positives = 159/367 (43%), Gaps = 72/367 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SAL+ + V I + R VL P Sbjct: 28 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 88 VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 LEL +PY +G+L+SA+ DK K+V S G+PV P +V D+ Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + D + LD + H + L+E + G E+ Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGITKV--DDAAGLDEAIEEARRHDPKFLVESLLSGREIE 265 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EVQRLA Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSAAGLVPAPLTDEQTAEVQRLAVE 324 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S+FP M +G + EL+ ++ Sbjct: 325 AFEAASCEGLVRADFFLT-DDGSFVINEINTMPGFTPISMFPRMWQASGVEYPELVDRLI 383 Query: 294 EDASCLR 300 A+ R Sbjct: 384 -TAALNR 389 >gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 367 Score = 308 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 45 --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 L ++P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + +R T + + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A + Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350 >gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 162/341 (47%), Gaps = 52/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+SSER+VS SG A AL + G + +DV Sbjct: 3 IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62 Query: 39 ---------------------DRSVGLVLAH-----LKPDLAFNVLHGNFGEDGLVQAIL 72 D+S + K D+ F LHG GE G VQA Sbjct: 63 VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 +L I YT + L+SA++MDK +K V+ GVPV + + P ++KP Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G+ ++ + + + L + W D++++EQ++ G E + GV+ +L + EI Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFSDGVIEGKALPIIEI 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A PK FY Y+ KY++ ++ PA+I ++++ A +A++A+G +R DF+ D Sbjct: 241 A-PKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMDK 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ LE N PGMTP S+ P+ A G F +L ++ Sbjct: 300 DEN-IYCLEANTLPGMTPTSLLPQEAKVTGMDFEDLCEKLI 339 >gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] Length = 356 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITSEIESTEDL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RIDNIPTGEISQLLSKGSLGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +S P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEDELKSGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341 >gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1] gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPQRFEVVPVGITPEGSWVLTDGRPETLAITDGA 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVSGSSGTELALAADPGRRGQLLSLGDAAGDVLAAVDVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+LASA MDK +K+++++ G+PV +++ ++ + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + ++P + + H ++++E + G EL CGV+ D L Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAI--ELARRHDPKVIVEAAIPGRELECGVLEFPDGHL 244 Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V EI V + FY +E KY + +PAK+ I + V+ LA A AI Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 305 CQGLARVDFFLTDAG--PVINEINTMPGFTTISMYPRMWAASGIDYPTLLATMVETAIAR 362 >gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] Length = 358 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 45/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG+S+E +VS + +A + +++ I + + + Sbjct: 8 LVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTPL 67 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 A P + +LHG GEDG +Q +LEL ++PY +G+L+ Sbjct: 68 PDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVLS 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSL 139 SAL MDK +K V + G+P C + D + + P +KP GSS+ Sbjct: 128 SALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKS 197 GI + + D + + + + +++E+ V G E+ V+GD + + V P S Sbjct: 188 GITKAHDEAEL--DTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEPGS 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY + + V+PA + + +V+ LA A+ C G++R DF ++ R Sbjct: 246 EFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGRGW 305 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S++P++ G S+ +L+ +V A Sbjct: 306 LLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344 >gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 355 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 53/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE +VSL S + A++ +++ I + R +L L+ Sbjct: 7 VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66 Query: 51 -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG +GEDG +Q + ++ +P Sbjct: 67 AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGS 137 GIL SA ++DK +K+++ G+PV SI V ++ + P +KP++ GS Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFVKPVRQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVP 195 S+G+ + L++ ++ H D++LIE++V E+ C V+ D +L V+ Sbjct: 187 SVGVSKAANAEEFRAALIE--AFKHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGEI 244 Query: 196 ----KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 FY+Y+ KY + +PA++P D+ + ++ L+ A +A+GC G++R DF Sbjct: 245 VTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFFV 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P + E+N PG T +S++P+ G S+ L+ ++E Sbjct: 305 RP-DMSMVVNEVNTMPGFTNISMYPKAMEATGISYPALVDRLIEHGLAR 352 >gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 330 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58 + VL GG SSEREVSL SG +AL++ G++ +D S+ +L + ++ +N L Sbjct: 26 VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ + + +P T + I ASA++MDK+ SK++ S GVP ++ Sbjct: 86 HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145 Query: 119 DSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + + P VIKP GSS+G+ ++++ I L ++ + +L+E+Y++G+ Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 EL+ G++ D L EI P S Y YE KY ++ ++P ++ + L A+ Sbjct: 204 ELSVGILADRVLGAVEIR-PTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G +R+D F LE+N PGMT S+ P++AA+AG + L ++E Sbjct: 263 HALGCTGYARADLRV-QADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97] gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis AF2122/97] Length = 370 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 165/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F V + + + VL PD Sbjct: 10 VAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRE 69 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 70 LPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYV 129 L +PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P Sbjct: 130 LAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L Sbjct: 190 VKPARGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTL 247 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY + KY + +PAK+ + + +++LA A AI Sbjct: 248 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAID 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG++R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 308 CRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 365 >gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] Length = 357 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 162/338 (47%), Gaps = 44/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + VL GG+S+E +VS S +A + + +++ + +D+ Sbjct: 8 LVVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAEL 67 Query: 41 -----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + VLA D + F +LHG GEDG VQ +LEL ++PY G+LAS Sbjct: 68 PNSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLAS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------SQHLISPPYVIKPLKGGSSLG 140 ++ MDK +K+V + +P C + D + + P +KP GSS+G Sbjct: 128 SVCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSD 198 + + + + D + + + D ++IE+ V G E+ V+G+A+ D + P S+ Sbjct: 188 VSRAETLEEL--DAAINVALRYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVKPGSE 245 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY YE KY + + ++PA + + +V+ LA A A+ C G++R DF ++ R Sbjct: 246 FYDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGWL 305 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S++P+M G + +L+ +V A Sbjct: 306 LNEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLVTLA 343 >gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] Length = 304 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 156/302 (51%), Gaps = 8/302 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG SSEREVSLS AL G KV D+ G V A D AF LHG Sbjct: 5 LVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLNLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-S 120 GEDGL QA+L+ +PY SG S L+++K SKQ+ G+ S + D Sbjct: 65 PGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPPGDGF 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP+ +KP GGSS+ + +++ +P L + ++ GD L+E+ + G ELTC Sbjct: 125 VPDFGPPWFVKPTSGGSSVSMTLVRDPADLPEAL--ARAFASGDTALVEEGLAGPELTCA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I +F+ Y KY + + PA +P + E+ R++ AH+A+G Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISLAAHKALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298 G SR+DF+ LE+N PGMT S+ P+ A AG SF +L+ ++E A C Sbjct: 243 SGYSRADFIHTESG--PMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARLMELGLARC 300 Query: 299 LR 300 + Sbjct: 301 GK 302 >gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC 12228] gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228] gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU045] Length = 357 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGI--TEAFQFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] Length = 366 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG S+E +VSL S K + L+ F + I ++ Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65 Query: 45 -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L +P D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 PY I++SA MDK +K+++ G+ V P I + ++ + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L S ++ + +++IE + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEAEFNAAL--SMAFEYDLKVIIESAIVGREIECAVLGNEEPEVSP 243 Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY + V+PA + I +++ A A+Q + C G+SR D Sbjct: 244 CGEIVLNDAFYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ G ++ L+ ++E A Sbjct: 304 FLTE-DNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIELA 350 >gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] Length = 300 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL+SGKA L+ + V +D + DLA LHG Sbjct: 4 IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG +QA+LE + I Y+ L S + MDK +K + GV + V+ Sbjct: 64 KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P IKP GGSS+ ++K + +++ ++ + D ++IE+Y+ GIE Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAVIE--AFKYDDIVMIEEYIKGIEH 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I +F+ YE KYS+ N ++ + K ++ + Sbjct: 182 TSFILNGEVFPTIRI-TSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG R+D++ +V+ LEIN PGMT S+ P+ A G + LL ++E A Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298 >gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] Length = 385 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + ++V I + L P Sbjct: 19 VAVVCGGRSSEHGISVVTAGAVLRAIDRSKYEVLPIGITTDGRWALTADDPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDELAESTEGGVVLPVDPHNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ D Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYVVIRPREWDRDPAAARKKVV 198 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + D LD + H ++L+E V G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DGLAGLDEAIEEARRHDPKVLVEAAVRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ V+PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-IDSTPGVVPAPLTEEQTAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P+M G S+ EL+ ++ Sbjct: 316 AFEAASCEGLVRADFFL-AEDGGFVINEINTMPGFTPISMYPKMWEATGVSYEELVDRLI 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2 155] gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis] gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 373 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V I + VL +P Sbjct: 13 VAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAITDGK 72 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 73 LPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L +PY SG+LASA MDK +K+++++ G+P+ +++ ++ + + P Sbjct: 133 LAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLDLEQRERLGLPVF 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + + H ++++E V G EL CGV+ D L Sbjct: 193 VKPARGGSSIGVSRVTAWDELPAAVAL--ARRHDPKVIVEAAVIGRELECGVLEFPDGRL 250 Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V EI V + FY + KY + +PAK+ D+ E+++LA A AIG Sbjct: 251 EASTVGEIRVAGVRGREDGFYDFATKYLEDAAELDVPAKVDDDVADEIRQLAVRAFTAIG 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A G + LL MV+ A Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTAIAR 368 >gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] Length = 309 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 163/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ--IDVDRSVGLVLAHLKPDLAFNVL 58 + V+MGGISSERE+SL +G+ + L+ + ++V I+ + + D+A L Sbjct: 3 IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + GV + ++ Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P ++KP GGSS+GI +++ ++ + + ++ S +LIE Y G Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEACSL--DQAILIEPYYKGT 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+TC ++ L + I+ S ++ Y+ KY + ++P I + V+ A ++ Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEE-KVVELPPVIEQRVREAALASY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + C+ +R D + + + LE+N PGMT S+ P+ AA AG +F +LL ++ Sbjct: 240 RLLQCKVYARVDMIL--CQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIAS 297 Query: 296 ASCLR 300 + R Sbjct: 298 SLHER 302 >gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 362 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGI--TEAFQFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S] gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S] Length = 368 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 MPTVDAGGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L IPY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + D + + +H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRV--ADWSQFDAAVAVARSHDPKVIVESAIVGREVECGVLEFPDGDV 245 Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P +D FY ++ KY +PAK+ D+ ++++ LA A +A+ Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M AG + L+ +V+ A Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363 >gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 359 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 55/345 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51 + GG S+E EVSL S K A++ F+V+ + +D+ +L P Sbjct: 2 IFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALIS 61 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F ++HG GEDG +Q +L + IP+ Sbjct: 62 LNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLK 134 SG++ SA+SMDK +K+++ G+ + P I + R DS + P IKP Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+G+ ++ + + ++H ++L+E + G E+ C VMG+ + + Sbjct: 182 QGSSVGVSKVRNAAEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASLCGE 239 Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +FYSY+ KY + + ++PA I ++ +A +A+ C G++R D Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 P-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 343 >gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] Length = 362 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 163/340 (47%), Gaps = 49/340 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG S+E +VS++S + AL+D+ + + R + Sbjct: 8 LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67 Query: 52 ------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 D+ F +LHG +GEDG VQ LEL+ +PY SG+L S Sbjct: 68 DSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 +LSMDK+ K++ S G+P+ + + R + + P +KP GSS Sbjct: 128 SLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196 +GI K S+ L +S + +L++EQ V+ EL C V+G+ V +P Sbjct: 188 IGITKAKDRSSLLQALELAS--KYDRRLIVEQGVEARELECAVLGNDYPRASVVGEILPG 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY++E KY S +S ++PA IP + E++ A A +A+ G++R DF K Sbjct: 246 DEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLT-SENK 304 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG TP+S++P++ +G S+ +L+ +++ A Sbjct: 305 VLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344 >gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] Length = 310 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG ++EREVSL SG AC +ALE + + + +D L L+ D A NV+HG Sbjct: 14 VVLLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 GEDG +QA L L IP + S +L SAL+MDK+R+K + + G+P + + Sbjct: 74 RGGEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEAL 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ + + + ++ + ++ EQ++ G E T Sbjct: 134 SVAEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQY---GEVFAEQWIVGKEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + + DFY Y KY ++ + P + + +Q LA A + Sbjct: 191 AAILGDETLPLVRLET-DQDFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTV 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R D + D + + +E+N PGMT S+ P A AG SF EL+L ++ A Sbjct: 250 GASGWGRVDLMVDEA-GQPWLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTA 306 >gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] Length = 363 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S + ++ + + I + + L Sbjct: 6 VGIIFGGQSGEHEVSLMSCVSVIQVMDKTKYDIIPIGITKKGNWKLFLGDISKIENGSWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG VQ++ EL+ IPY Sbjct: 66 DEAIPALLSPDPSCKCVITLKDGMESRYYLDVVFPVLHGPRGEDGTVQSLFELMNIPYVS 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132 G+ +SA+ MDK+ SK+++ G+P+ + + + + + P +KP Sbjct: 126 CGVTSSAICMDKVFSKKILEQSGLPIVDYKAFYKRELLARMPEIISEVEEFLGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + ++ + ++L+E+++D E+ C V+G+ + + Sbjct: 186 ANLGSSVGISKAGGPSELESAMRLAT--QYDTKILVERFIDAREIECAVLGNDEPNASLP 243 Query: 193 A--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P DFY Y KY + S +LPA + +Q LA A + + C G++R DFL Sbjct: 244 GEIIPSRDFYDYTAKYLDGDKSKLLLPAPVSRKDITRIQELAIKAFKTLDCSGMARVDFL 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S ++ E+N PG T +S++P+M +G S+++L+ ++ A Sbjct: 304 MSKVSGNIYINELNTIPGFTRISMYPKMWEISGLSYKDLIDKLINLA 350 >gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] Length = 368 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 MPTVDADGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L IPY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + D + + +H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRV--ADWSQFDAAVAVARSHDPKVIVESAIVGREVECGVLEFPDGDV 245 Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P +D FY ++ KY +PAK+ D+ ++++ LA A +A+ Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M AG + L+ +V+ A Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363 >gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] Length = 385 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITREGRWFLTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESREGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 MLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQLDEAAARKKII 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + H ++L+E + G E+ Sbjct: 199 DLAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIAEAQRHDPKILVEAALRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P++ +Y ++ KY ++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPPETHAYYDFDAKY-IDSTPGIVPAPLTPEETAEVRRLAVD 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P M +G + EL+ ++ Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPAMWQASGIEYPELVDRLI 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] Length = 304 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ ELL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 352 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 165/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG SSE EVS S S ++ ++ I + + Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +G + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + ++ + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V+G ++ +++ Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G L+ ++E A Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIELA 348 >gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] Length = 346 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 160/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S ER+VS++SG AL AG +V +D + + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 379 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 160/366 (43%), Gaps = 71/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SA++ + V I + L P Sbjct: 13 VAVVFGGRSSEHAISVVTAGAVLSAIDRDKYDVLPIGITTDGRWALTADAPERMAIADRA 72 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 73 LPNVADLAESETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 132 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120 +LEL +PY +G+LASA+ DK K+V S G+PV P ++ + Sbjct: 133 LLELSGVPYVGAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIV 192 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + D LD + H ++L+E + G E+ Sbjct: 193 EFAAEHGWPLFVKPARGGSSMGITKV--DDLSGLDEAIEEARRHDPKILVESLLRGREIE 250 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY +++ ++PA I + E+QRLA Sbjct: 251 CGVLEFEDGPRASVPAEIPPVTNHDFYDFEAKY-IDSASGIVPAPIGDEATAEIQRLAVA 309 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 310 AYEAVSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 368 Query: 294 EDASCL 299 + A Sbjct: 369 QAALTR 374 >gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896] Length = 353 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A+L GG S E EVS S K ++ ++ I +D+ Sbjct: 6 IAILFGGKSEEHEVSCRSAKYIFENVDRDKYRPFLIGIDKLGNYYYMKECNIEHLIDCTW 65 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ L + D+ F LHG GEDG +Q ++E + IPY Sbjct: 66 TDFIETNEVCFSKGDERFTLQLQGEKIVFDVVFPALHGPNGEDGKLQGLMEFVNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGS 137 ++SA+ MDK +K++V GV P +++ + + L+ P +KP GS Sbjct: 126 NSISSAICMDKEITKRLVGIEGVRQVPYVILYEGVVAEEKLLEMEEIGYPLFVKPANMGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194 S+G+ + Q + + +S + D++++E+ +D +EL +GD Sbjct: 186 SVGVSKAENQQELLQAIRVAS--KYDDKVIVEKGIDALELEIAALGDGKDAYFSTVGCIK 243 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY Y+ KY + ++ +PA I + E++ +A A+ A+ C G+SR DF D + Sbjct: 244 PRDIFYDYDSKYLTNDADFYIPAPISFEKETELREMARKAYTAMLCEGLSRIDFFMDKET 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++++ EIN PG T +S++P++ Y G +EL+ +++ A Sbjct: 304 QEIYFNEINTMPGFTAISLYPQLMDYDGVGAKELIGRLIDYA 345 >gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 306 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + V P I + + Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P VIKP GSS+GI ++ + + + ++N+ + ++IE++ Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ L +I K++FY Y KY ++ ++ P+ + +E++++ Sbjct: 183 LKGTEYTVSILNKKVLPPIKIIT-KNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A ++GC+G R D + D K + LEIN PGMT S+ P A G SF EL+L Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMAAKSIGISFDELILK 300 Query: 292 MVE 294 +++ Sbjct: 301 ILK 303 >gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 299 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 162/296 (54%), Gaps = 6/296 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 +L GG S EREVSL G+ A+AL++ G V+ D + ++ + D AF LHG Sbjct: 5 LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREHDAAFINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120 GEDGLVQAIL+ + PY +G S L++ K ++Q+ G+ + + + R + Sbjct: 65 PGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPGPNW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +K GGSSL + + ++ + L +S ++ G++ ++E V G E+TCG Sbjct: 125 KPDLQYPMFVKSNTGGSSLHLSRVTNEEELYTAL--NSLFSMGEEAIVETAVVGREVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ +L + V K +++ Y KY+ + + PA I + +VQ A AH A+G Sbjct: 183 VLGEEALAPI-LVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALRAHHALGL 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G SR+DF+ ++ LE+N PGMT S+ P AA G SF +L+ ++E A Sbjct: 242 KGYSRADFIL-QDDGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLLELA 296 >gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC 27064] gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 390 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE E+S+ + A A++ + + V I + L +PD Sbjct: 24 VAVVFGGRSSEHEISVVTAGAVLRAIDRSVYDVLPIGITVDGRWALTADEPDRMAITDRR 83 Query: 53 ------------------------------------------LAFNVLHGNFGEDGLVQA 70 + F VLHG +GEDG +Q Sbjct: 84 LPSVDQLAESTEGDVVLSVHPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL +PY +G+L+SA+ DK K+V +S G+PV P ++ + Sbjct: 144 LLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYTVIRPREWEQDASAARKKIV 203 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + D LD + H ++L+E + G E+ Sbjct: 204 DFTGDHGWPVFVKPARAGSSIGITKV--DDLSGLDEAIEEARRHDPKILVEALLRGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY +++ ++PA + + EV+RLA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKY-IDSASGIVPAPLTEEQTAEVRRLAVA 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P M G + EL+ ++ Sbjct: 321 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQETGVGYAELVDRLI 379 Query: 294 EDA 296 + A Sbjct: 380 QAA 382 >gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 157/356 (44%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL+S + + L+ ++V I + ++ +L Sbjct: 15 IGLIFGGRSGEHEVSLASANSVMANLDKDKYEVILIGITKTGAWLLGTDPTRLLASPDAQ 74 Query: 47 -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71 + D+ F V+HG +GEDG +Q + Sbjct: 75 PNSAQSDQQATTAVTLTGDPNVRRLIPLQNGTQLHDNGALDVIFPVMHGTYGEDGALQGL 134 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122 LE+ +PY G+L SAL MDK + K + + +PV P + +R + Sbjct: 135 LEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFLAYHRKQWKQAPETILLAVEQ 194 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++KP GSS+G+ Q++ + Q+ + +++IE+++D EL+C V+ Sbjct: 195 ELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAG--EYDTKIIIERWLDVRELSCAVL 252 Query: 183 GDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ + I V + Y+ KY +PA IP + KEV ++ A + Sbjct: 253 GNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIPGPLAKEVFHMSTQAFLVLDL 312 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF D +++ E+N P T S++P++ + + + +LL ++E A Sbjct: 313 SGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSASNLPYPKLLDRLIELA 368 >gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] Length = 358 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S +P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSTYPLLWENMGLKYGDLIEELIQ 341 >gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405] gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405] Length = 368 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE EVSL S + ++ K+ I + ++ L Sbjct: 3 IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L D F VLHG FGEDG +Q + E+ ++ Sbjct: 62 AVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126 PY ++++++SMDK ++K + G+P+ P I + R D ++ + Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDLEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P IKP + GSS+G ++K + +S W +++L+E ++ E+ C V G+ Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLW--DNKILVEACIEAREVECSVTGNTK 239 Query: 186 -SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +P FY YE KY+ N + +PA + K ++ A A++A+ G+ Sbjct: 240 TVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF D + K++ E+N PG T +S+FP+M +G + EL++ ++E A Sbjct: 300 SRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA 352 >gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 304 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 163/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P++I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ ELL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] Length = 358 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 +A+L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLK 134 SA+ MDK+ K S G+P V R + D + P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ Q + ++ + ++++E V+ EL C V+G+ + + Sbjct: 186 LGSSVGISKVRSRQELEA--ALDAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243 Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T +S++P++ + G SF EL+ ++E A Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIELA 347 >gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6] gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39] gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39] Length = 347 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] Length = 357 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 57/346 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 VL GG+S E E+S S + + L+ + + + + + VL P Sbjct: 9 VLFGGVSGEHEISCLSAASVLAQLDPSRYTAVPVGITKEGDWVLDRRSPEELGDKAGGLP 68 Query: 52 --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F VLHG +GEDG VQ + EL +PY Sbjct: 69 QVDRTAPRVALAVGRAGAGELRFVGGELAAQVDVVFPVLHGPYGEDGTVQGLFELANLPY 128 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKG 135 G+ ASA MDK K ++ G+PV P ++ + P +KP +G Sbjct: 129 AGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPVFVKPARG 188 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVT 190 GSSLG++ + + + +P L +++ + ++L+E + G E+ C V+ A+ + Sbjct: 189 GSSLGVVKVDRWEDLPHAL--ATARKYDPKVLVEAGIAGREIECAVLEFPDGRVAAGALG 246 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI VP++ Y +E KY + + +PAK+ + E++ LA A + + C G+SR DF Sbjct: 247 EIVVPET--YDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGLSRVDFFL 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T S++P+M AG + LL +++ A Sbjct: 305 T-QDGRPVVNELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349 >gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] Length = 779 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 166/311 (53%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SGKA AL G+ + ++ + ++ + L+P + FN LH Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG++Q L++L +PYT SG+ A+AL+MDK +K++ + G+ L++ Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592 Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P V+K + GSS+G+ ++ + + + L + +G + L+E+++ Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEELNAALDDV--FTYGREALVEEFIR 650 Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G +L V EI S Y YE KY+ STH++PA + + + VQ Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITTA-SGRYDYESKYTPGASTHIVPAALSKECTEAVQA 709 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A A GC G +R D + + + +E+N PGMT S+ P+ A G F EL Sbjct: 710 IAVRAFTACGCSGAARVDIMLSEEE-QPYVIEVNAVPGMTETSLVPDAARAVGMEFPELC 768 Query: 290 LWMVEDASCLR 300 ++ A R Sbjct: 769 EKILTMAGYYR 779 >gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] Length = 326 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 170/308 (55%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S ER++S+ SG C AL++AGF+ V DV D S LA + D+ F + Sbjct: 11 VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +LE L IPYT SG+LASALSM K +K V S +P I V + Sbjct: 71 HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130 Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 L ++ PYV+KP GSS G+ ++ ++ + +S+ +L+E+ Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAI--ASARGKNSGVLVEER 188 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T V+G +L V EI ++ Y + K HV+PA + Y Q Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKY-EAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+A+GC G+SRSDF+ D + + + LE N PGMT S+ P+ A + G SF EL Sbjct: 248 ELAVRAHRALGCTGVSRSDFIVDA-TGEPYILETNNIPGMTEHSLIPDAARHDGMSFSEL 306 Query: 289 LLWMVEDA 296 +++E A Sbjct: 307 CTYLIECA 314 >gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6] gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6] Length = 347 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335 >gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] Length = 312 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS +G A SALE G+ V +++D + + FN LH Sbjct: 6 IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELDPPHFAEAIRKSDCAIVFNALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q L++L IPYT SG+LA+A++MDK+ SK+V G+ S +RF D Sbjct: 66 GRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEFD 125 Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ S P VIK GSS+G+ +++K+ L+ ++ + +++L+E+++ Sbjct: 126 AELPSRIRKAFSLPVVIKASSQGSSIGVAIVEKE--EELEAALKDAFRYDEEVLVEEFIR 183 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V GD + V EI S Y Y KY+ STH++PA+IPLD+ + VQ+ Sbjct: 184 GKELTVAVWGDAREAQAFPVIEITTV-SGRYDYASKYTKGASTHIIPARIPLDVTERVQQ 242 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A +A GCRG++R+D + + +EIN PGMT S+ P+ G F EL Sbjct: 243 LAVDAFRACGCRGVARADMML-GEDMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPELC 301 Query: 290 LWMVEDA 296 ++E A Sbjct: 302 ERILEMA 308 >gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 302 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ + ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I V Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP GGSS+ + K + I +++ + ++++IE ++ G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYDEEVIIESFIKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + EI K+DFY Y+ KY++ + H+ P ++ +Y EV+ +A + Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 368 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEQQQLIAADNATALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG++ SA+SMDK +K+++ G+ + P I + R D+ + P IK Sbjct: 126 PFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + +++ ++L+E + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAV--TLAFDFDHKVLVESAIVGREIECAVLGNDNPRASL 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSY+ KY + + V+PA I ++ +A A + + CRG++R D Sbjct: 244 CGEVVVSDEFYSYDTKYINETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T ++++P++ G EL+ ++E A Sbjct: 304 FLTP-ENTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIELA 350 >gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132] gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132] Length = 303 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 167/296 (56%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++ GG S ER+VSLS + SAL++ G V+ D +L+ K D AF LH Sbjct: 3 VILIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G GEDGL+QA+L+ PY +G AS L+++K SK+V + G+ L+ Sbjct: 63 GTPGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGR 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ +S P +KP KGGSSLG+ ++K+ + P L + + L+E ++ G+ELT Sbjct: 123 ETPLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAALDKVFA--MCQSALVETFIPGVELT 180 Query: 179 CGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 CG++G+ +L + I SDF+ YE KY++ + + PA + + + +Q +AH A Sbjct: 181 CGILGNEALPLIMITPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G G SR DF+ P + + LE+N PGMTP S+ P AA+ GYSF EL+ ++ Sbjct: 241 LGLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELI 295 >gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A] gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 348 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 167/341 (48%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDR---------------- 40 + V+ GG SSE EVS+ S K +AL + I +D+ Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67 Query: 41 -SVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L+ + D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137 L MDK+ K V S +P P I +N+ + + +IS P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196 S+GI + + + + +++++E+ ++G EL CG++G + + + + K Sbjct: 188 SVGITKAYSKEEFIAGI--EFAAKYDERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245 Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346 >gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] Length = 385 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 156/363 (42%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRTRYDVLPIGITQDGRWALTADEPERMAISDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDQLAESTEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYLVIRPREWERDESAARRKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + H + L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSALDEAIAEARRHDPKFLVEAALRGREIE 256 Query: 179 CGVMGDASLD----VTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ EI P + +Y +E KY ++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTDEETAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P+M G S+ EL+ +V Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQATGVSYPELVDLLV 374 Query: 294 EDA 296 A Sbjct: 375 RAA 377 >gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 300 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIVKE--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis] gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis] Length = 349 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 158/342 (46%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E EVSL S A + F + I + RS Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +K DL F VLHG GEDG +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ + ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + Q + D ++ H ++++E+ ++G E+ C V+G L V + Sbjct: 186 RAGSSFGITKVIEKQEL--DAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 >gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 306 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 155/294 (52%), Gaps = 6/294 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 ++ GG S+EREVSLS AL G KV+++D +L D AF +HG Sbjct: 5 LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDS 120 GEDGLVQA+LE ++ PY SG AS L+++K +KQV + G+P + R Sbjct: 65 PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSSL + + + + + G+ +L+E+ V+G E+T Sbjct: 125 STKLRFPLFVKPNMGGSSLDLCRADNAEELTPAI--ERIFCRGETVLLEEGVNGQEVTSA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ +L + I F+ Y KY+ + + PA IP I + VQ L+ AH+A+ Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 RG SRSDF+ + + LE+N PGMTP S+ P+ A AG F L+ +++ Sbjct: 243 RGYSRSDFML--EGDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALIKRLMD 294 >gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS] gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS] Length = 371 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 66/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F V + + VL +P Sbjct: 10 VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 70 LPEVSAESGTALALPADPGRRGELVSLSPAPAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128 EL +PY +G+LASA MDK +K+++ + G+PV +++ T+D + + P Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---- 184 +KP +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDGR 247 Query: 185 -ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + EI V + FY + KY + +PAK+ D+ E++RLA A +AI Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G++R DF EIN PG T +S++P M A +G + LL MV+ A Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365 Query: 299 L 299 Sbjct: 366 R 366 >gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] Length = 304 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] Length = 304 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + LV D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)] gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 389 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 23 VAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERR 82 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 83 TPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 142 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ DK K V +S G+ V P ++ Sbjct: 143 LLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIV 202 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + H ++L+E + G E+ Sbjct: 203 DFAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIEEARRHDPKILVEAALRGREIE 260 Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ ++PA + + EVQRLA Sbjct: 261 CGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-IDSTPGIVPAPLTAEETAEVQRLAVA 319 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V Sbjct: 320 AFDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLV 378 Query: 294 EDA 296 + A Sbjct: 379 QAA 381 >gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] Length = 385 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 159/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + + V I + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRSQYDVLPIGITADGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDQLAESTEGGVVLPVDPASREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQRDESAARKKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSGLDGAIAEAQRHDPKILVEAALRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTEEETAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P+M G + EL+ +V Sbjct: 316 AFEAASCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQATGIGYPELVDRLV 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] Length = 373 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 106/357 (29%), Positives = 169/357 (47%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 13 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 73 LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL--ISPPYV 129 L +PY +G+LASA MDK +K++ S+ G+P+ P ++ R ++D + L + P Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + +++ H ++++E ++G EL CGV+ D L Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAI--AAARRHDPKVIVEAAINGRELECGVLEFPDGRL 250 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY +E KY + +PAK+ D+ V++LA A +AI Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 365 >gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 367 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 45 --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 L ++P D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A + Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350 >gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] Length = 304 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 348 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ + V Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D + + + F VLHG GEDG VQ LE+L++PY IL+S+++ Sbjct: 66 MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P P + V + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFTKPSNMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L ++ + ++L+EQ V E+ G++G+ + T V FY Y Sbjct: 186 ENQAELRKSL--ELAFKYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PA+IP ++ ++ A LA +AIG +G+SR DF + ++ E+ Sbjct: 244 EAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLAYPDLIERLVELA 336 >gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA] gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae JJA] gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17570] Length = 347 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402] Length = 368 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 162/353 (45%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE EVSL S + ++ K+ I + ++ L Sbjct: 3 IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L D F VLHG FGEDG +Q + E+ ++ Sbjct: 62 AVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126 PY ++++++SMDK ++K + G+P+ P I + + D ++ + Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKALLARAEKDLEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P IKP + GSS+G ++K + +S W +++L+E ++ E+ C V G+ Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLW--DNKILVEACIEAREVECSVTGNTK 239 Query: 186 -SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +P FY YE KY+ N + +PA + K ++ A A++A+ G+ Sbjct: 240 TVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF D + K++ E+N PG T +S+FP+M +G + EL++ ++E A Sbjct: 300 SRVDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMHLIELA 352 >gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 367 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + +AL+ F+V + + R VLA P Sbjct: 9 VAIVFGGRSPEHGISCVSAGSVLAALDPDEFEVVPVGITRQGQWVLASGDPSGLAIADRK 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITAGSGAELVLRADPAVGGLMVLDPAQGPVALADVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130 + +IPY + + ASA +MDK +K++ ++ G+PV P ++ + + + + P + Sbjct: 129 MADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRAGMSLSDEDKERLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP + GSS GI + + L+ ++ ++L+E V G E+ CGV+ + Sbjct: 189 KPSRAGSSFGITKVDDWADLDAALV--TAREIDSKVLVEGAVVGREIECGVLEGEAGGAP 246 Query: 191 EIAV-------PKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 E +V D+Y +E KY + + +PA +P + ++V+ A A A+ C Sbjct: 247 EASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADLPEPVARQVRDYATRAFTALDCS 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DF P V+ EIN PG TP S+FP M + +G + +L+ ++ A R Sbjct: 307 GLARVDFFVTPQMD-VYLNEINTMPGFTPTSMFPRMWSASGLEYPKLVNRLIRTALHRR 364 >gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] Length = 346 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S ER+VS++SG AL AG +V +D + + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHEVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P + E QRLA H+A+ G SR+DF D R ++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 776 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 172/311 (55%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K + GSS+G+ ++ ++ + L + ++++G ++L+E+++ Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDE--AFSYGGEVLVEEFIA 647 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ +L V EI S Y YE KY+ S H++PA I + EVQ Sbjct: 648 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 706 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 707 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 765 Query: 290 LWMVEDASCLR 300 ++E A R Sbjct: 766 EKILEMAGYQR 776 >gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 304 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] Length = 347 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] Length = 356 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ +++ I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ ++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLINLA 341 >gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] Length = 352 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 165/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG SSE EVS S S ++ ++ I + + Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +G + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + ++ + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V+G ++ +++ Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 K FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G L+ ++E A Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIELA 348 >gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 304 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS] gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS] gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS] gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS] Length = 371 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 66/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F V + + VL +P Sbjct: 10 VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 70 LPEVSAESGTALALPADPGRRGELVSLSPAAAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128 EL +PY +G+LASA MDK +K+++ + G+PV +++ T+D + + P Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---- 184 +KP +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDGR 247 Query: 185 -ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + EI V + FY + KY + +PAK+ D+ E++RLA A +AI Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G++R DF EIN PG T +S++P M A +G + LL MV+ A Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365 Query: 299 L 299 Sbjct: 366 R 366 >gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2] gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1] gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] Length = 346 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S ER+VS++SG AL AG +V +D + + Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] Length = 368 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + S L+ + V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAIRGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGTATLTEEQKAELGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + LD + + H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRVSNWD--GLDGAIAHARLHDPKVIVEGAIIGREVECGVLEFPNGDV 245 Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P SD FY ++ KY +PAK+ + +++ LA A +A+ Sbjct: 246 KASVVAEIRMPDSDADSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G+SR DF EIN PG T +S++P+M G +R L+ +V+ A Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAVAR 363 >gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 317 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 118/302 (39%), Positives = 184/302 (60%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + +++R + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + PYV+KP+ GSS+G+ +I + L+L +SS ++++IE+Y+ GIEL Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSS-TIMEKMIIEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ + ++ EI PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 185 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 303 Query: 299 LR 300 R Sbjct: 304 HR 305 >gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] Length = 319 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 16/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AV+ GG S E E+++ SGK CA+AL++AGF V +DV ++ + LA D+ + + Sbjct: 11 VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+P I V T+ Sbjct: 71 HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130 Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS G+ + + +P L + G+++LIE+ Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAG--EQGERILIEEC 188 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+T V+G+ +L + EI V +FYS + KY + HV+PA++ +Y Q Sbjct: 189 VVGTEITVPVIGNDNPTALPIVEI-VTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH A+GCRG+SRSDF+ + LE N PGMT S+ P+ A G F EL Sbjct: 248 ELAIKAHNALGCRGVSRSDFIVTE-DGEPVVLETNTIPGMTARSLLPDSARTGGIDFPEL 306 Query: 289 LLWMVEDASCLR 300 +E A R Sbjct: 307 CTRFIEFALEDR 318 >gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 315 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 118/302 (39%), Positives = 184/302 (60%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + +++R + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ + PYV+KP+ GSS+G+ +I + L+L +SS ++++IE+Y+ GIEL Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSS-TIMEKMIIEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ + ++ EI PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 183 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 301 Query: 299 LR 300 R Sbjct: 302 HR 303 >gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 368 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 62/358 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + AL+ F+V + + R+ VL P Sbjct: 9 VAIVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGQWVLTSGDPTELAINSRR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITAESGADIVLRADPTGSGLLVLDPTEGPRALANVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ ++ G+P+ P ++ + + + + P + Sbjct: 129 MAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP + GSS G+ + + + + ++L+E + G E+ CGV+ + Sbjct: 189 KPSRAGSSFGVSKVSDWADLEAAIAI--AREIDSKVLVEGAIIGREIECGVLEGEAGGTP 246 Query: 191 E-------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 E V DFY +E KY S + +PA +P + ++V+ A A A+ C Sbjct: 247 EASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPADLPERVARQVRDYAVRAFTALDCA 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R+DF P ++ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 307 GLARADFFVTP-ELDIYLNEINTMPGFTPTSMFPRMWAASGLEYPKLVDRLIRTALTR 363 >gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC 3502] gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 300 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680] gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 385 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 161/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITRDGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESNEGGVILPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWERDESAARRKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + + H ++++E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAVAEAQRHDPKIIVEALLRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI +S +Y +E KY ++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P+M +G ++ EL+ +V Sbjct: 316 AFEATSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQASGIAYPELVDRLV 374 Query: 294 EDA 296 E A Sbjct: 375 EAA 377 >gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] Length = 313 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+S+EREVSL SG L +AG D L AFN LHG Sbjct: 12 VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERPLAALKDEGYVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT +G+L SAL +DK R+K V G+P P +V Sbjct: 72 GYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 + + P +KP GSS+ +I +K L + H +L+E+ ++ Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVIKVKDA--AALPAALDEAARHDKIVLVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L V I VP +FY Y KY + ++ +++P I EV+RLA Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRLARR 248 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 300 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 158/297 (53%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V+ Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] Length = 294 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 158/298 (53%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58 +AV+ GG SSERE+S+ +G A + L F+ I D R + P + F L Sbjct: 3 VAVVCGGNSSEREISIITGNAVYNGLLK-NFEAECIVCDNARDCLDKIIKSSPSVVFIAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGE+G +QA LE L I +T S ++M+K +K ++ +P L+ + Sbjct: 62 HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLIKKVE- 120 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + +++ P IKP GSS+ + + + + ++L+IE+ + G ELT Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANNENQ--AKYISQNLLKKHNELIIEKRLSGKELT 178 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ +L + EI PKS FY Y+ KY+ + +++PA + +I K ++ +A A +AI Sbjct: 179 VGVLFGKALPIIEIR-PKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAFEAI 237 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+ +R DF+ D + LEIN PGMTP S+ P+ A AG SF EL +VE A Sbjct: 238 GCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEGA 293 >gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] Length = 304 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 356 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ + V + + + + L KP+ Sbjct: 3 IILLYGGKSEEHDVSILSAYSILNAIYYEYYTVQLVLITKQGEWIKGPLLTEKPENKEIL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE + +PY +G Sbjct: 63 NLTGAKDENTMAYSSGTSIMPCEIFEKDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS-------PPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V N + DS+ L P +KP Sbjct: 123 VLASATAMDKIMTKYLLQTVGIPQTPYVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + L ++ + ++++EQ ++ E+ ++G+ + T Sbjct: 183 LGSSVGISKVENREELQKAL--ELAYKYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V DFY Y+ KY + +PA++P ++ ++ Q A A++ + G+SR DF Sbjct: 241 VVKNVDFYDYQAKYVDNQISMKIPAELPAEVCRQAQEYAKKAYKTLDGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNTMPGFTEFSMYPSLWENMGLKYSDLIEELIQ 341 >gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 347 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + + P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENKEELHQAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335 >gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 304 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 304 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Hungary19A-6] gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Hungary19A-6] Length = 347 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGITYPDLIERLVELA 335 >gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] Length = 300 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIVKE--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293 >gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] Length = 390 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 24 VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADEPERMGIAGRE 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 LPSVERLAESGEGSVVLPVDPGNREVVYSEPGSVPKALGDVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ R + Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWQQEPSAARRRIV 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP + GSS+GI ++ + D + H ++++E + G E+ Sbjct: 204 EFAAEHGWPLFVKPARAGSSIGITKVEDPADL--DEAIEEARRHDPKVIVEALLRGREIE 261 Query: 179 CGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ SL V FY +E KY ++ ++PA + + + VQ LA Sbjct: 262 CGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKY-IDSAAGIVPAPLTEEQTRRVQELAVA 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 321 AFDAASCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLL 379 Query: 294 EDA 296 + A Sbjct: 380 QAA 382 >gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 372 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 30 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 90 MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 150 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 210 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+ Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 360 >gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] Length = 304 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 5/296 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + ++ GG SSEREVSL+ + AL G V+ D+ + +L + D A LH Sbjct: 3 ILLIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118 G+ GEDGLVQA+LE + PY SG S L+++K +KQ+ G+P + R Sbjct: 63 GSPGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAE 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +K GGSSL + Q + D + + G+ +LIE + G E+T Sbjct: 123 GWEPRLPWPLFVKTTTGGSSLRLGRATNRQEL--DAIMDEIFAAGEGVLIEPQLPGKEIT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CG++G+ ++ I D++ YE KY++ + + PA + + EVQRLA AH+A+ Sbjct: 181 CGILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G +G SR+DF+ P + LE+N PGMTP S+ P+ AA G F +LL ++E Sbjct: 241 GLKGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIE 295 >gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 304 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 785 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 177/311 (56%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFT 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+V+++ +P S + T Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598 Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D+ I S P V+K + GSS+G+ ++ +D+ + L +++++GD++LIE++++ Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPAL--DAAFSYGDEVLIEEFIE 656 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G + V EI S Y Y+ KY+ STH++PA + EV++ Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIR-SVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQ 715 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A+ A GC G++R D L +R + +E+N PGMT S+ P+ A G F EL Sbjct: 716 LARRAYAACGCSGLARVDLLLSAENR-PYVIELNAVPGMTETSLVPDAARALGIEFPELC 774 Query: 290 LWMVEDASCLR 300 ++ A R Sbjct: 775 ERILALAGYRR 785 >gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 311 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17545] Length = 347 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S + A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] Length = 347 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++R A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] Length = 357 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VS+ + A AL+ F + + + V Sbjct: 5 LGLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQL 64 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F +LHG GEDG VQ +LELL +PY +G+L Sbjct: 65 EFSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P + R + + P +KP G Sbjct: 125 ASSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAV 194 SS+GI + + ++ ++ ++++E+ V E+ GV+G+ + V V Sbjct: 185 SSVGISKCTNREELAAAFEEAFQFDR--KIIVEEGVTAREIELGVLGNDEPECSVAGEIV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK DFY Y+ KY ++ ++PA+I + Y + ++ A +A+ C G+ R+DF Sbjct: 243 PKKDFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFFLT-RD 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV E+N PG TP S+FP + + G + +L+ +V A Sbjct: 302 GKVMINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 343 >gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 295 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 162/298 (54%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E+ Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294 >gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] Length = 347 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] Length = 366 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 166/351 (47%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG SSE E+S+ S ++ A+AL+ +K+ I + ++ + A Sbjct: 6 VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 K D+AF VLHG +GEDG VQ +LE+ + Sbjct: 66 AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127 + Y SG+LASA++MDK +K G+ V + R + ++ + P Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + + +++ + LIE+ ++ E+ V+G+ Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDR--KFLIEKAINAREMEVAVLGNDEP 243 Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 VP ++FY Y+ KY +S ++PA+I +++ A A A C G++R Sbjct: 244 IASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DFL + + +++ EIN PG T +S++P++ A G S+ EL+ ++E A Sbjct: 304 VDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354 >gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 310 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 158/304 (51%), Gaps = 13/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL S A ALE ++V +ID L + F LH Sbjct: 8 IALLCGGASGEREVSLLSAAAVEEALEK-RYEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GE+G +Q E + +PYT G+L+SA++MDK +K +V S +P I V R Sbjct: 67 GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + + V+KP GS+LG+ ++ + ++ +L+EQ++ G Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIVDNGDDL--ACAIDTALELAPSVLVEQFISGR 184 Query: 176 ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G L EI +P ++FY YE KY + H+ PA + ++ + +A Sbjct: 185 ELTVAVLGGEKPRVLPPIEI-IPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMAL 243 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH A+GC G+SR+D + D +R + LE N PGMT S+ P+ A G +F EL + Sbjct: 244 GAHDALGCYGVSRTDCILDERNRLWY-LETNTIPGMTGTSLLPDAAKAVGITFDELCWNI 302 Query: 293 VEDA 296 +EDA Sbjct: 303 MEDA 306 >gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] Length = 304 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 154/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++ GG SSER VSLS AL G +V D+ + K D F LH Sbjct: 3 ILLVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDGL QA+L+ +PY SG S L+++K SKQ+ +P V R Sbjct: 63 GAPGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGT 122 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 S P+ +KP GGSS+ + ++++ + +P L + + HGD LIE+ + G ELT Sbjct: 123 SARPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAALEKVFA--HGDDALIEEGLSGPELT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+GD +L I +F+ Y KY + + PA + + +E+ RL+ AH+ + Sbjct: 181 CAVLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G G SR+DF+ P + LE+N PGMTP S+ P AA AG SF +L+ ++E Sbjct: 241 GLCGYSRADFILAPEG--LRLLEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIE 294 >gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 385 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLNAIDRTRYDVLPIGITREGRWALTADEPARMAIVDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 PPDVEELAEAAEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYVVIRPREWERDRSAARKRIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + D LD + H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DGLAGLDEAIEEARRHDPKILVEAELRGREIE 256 Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ G + EI P + +Y +E KY ++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKY-IDSTPGLVPAPLTAEETAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF + EIN PG TP+S+FP+M G S+ EL+ ++ Sbjct: 316 AFEAASCEGLVRADFFLTE-EGEFVINEINTMPGFTPISMFPQMWQATGVSYGELVDRLI 374 Query: 294 EDA 296 E A Sbjct: 375 ESA 377 >gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47368] Length = 347 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 364 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 84/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + + A PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + + L + ++ + + ++EQ ++ E+ V+G+ + T V F Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y KY +PA+IP + + Q A A+ +G G+SR DF ++F Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47901] Length = 347 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] Length = 358 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + L A PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + + L + ++ + + ++EQ ++ E+ V+G+ + T V F Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y KY +PA+IP + + Q A A+ +G G+SR DF ++F Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 369 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSAGNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 45 -----------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 LA + D+ F ++HG GEDG +Q +L + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALALAQIDVVFPIVHGTLGEDGSLQGLLRMA 125 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129 +P+ SG+L SA++MDK +K+V+ + V P + +R T + + P Sbjct: 126 NLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A Sbjct: 186 VKPANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHA 243 Query: 190 TEI--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R Sbjct: 244 SVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 DVFL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 352 >gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] Length = 347 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVTFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii] Length = 307 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 150/304 (49%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG SER+VSL + ++ A AL G V ++DV V + +A N++HG Sbjct: 9 IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEVPGDVF--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q+ILE I YT +G+ +S ++ DK+ SK+ + GVP S Sbjct: 67 TFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRSQTYP-LDGSQ 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V+KP + GSS+G+ + + L + + H LIE YV G ELT G Sbjct: 126 PLAIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGHDT--LIEDYVAGKELTVG 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+GD L + I P FY KY + + PA + ++ K VQ A A Q Sbjct: 184 VLGDQVLPIIHIE-PVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKAFQ 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G R D + + F LE+N PGMT S+ P+ A G F +L ++E + Sbjct: 243 SCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIELS 302 Query: 297 SCLR 300 R Sbjct: 303 LAAR 306 >gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYLMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis] Length = 349 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 158/342 (46%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E EVSL S A + F + I + RS Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +K DL F VLHG GE+G +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ + ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + Q + D ++ H ++++E+ ++G E+ C V+G L V + Sbjct: 186 RAGSSFGITKVIEKQEL--DAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 >gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 348 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 163/345 (47%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG SSER+VSLS+G A AL + G V +D Sbjct: 3 IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62 Query: 39 --------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 DR+ G ++ D+ FN LHG+ GE+G +QA+ +LL I Y Sbjct: 63 HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135 T SG L+M+K SKQ+ + G+P +++++ + + P V+KP Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ L + S H +++E+Y+ G E G++G L EI +P Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAIEI-IP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K FY Y+ KY + + PA I D + + + +G +R+DF+ D Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVDE--N 297 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ LE N PGMTPVS+ P+ AA F LL +++++ LR Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342 >gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] Length = 347 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 785 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 175/311 (56%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+V+++ G+P + Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598 Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K + GSS+G+ ++ D+ + L +++ +GD++L+E+Y++ Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPAL--DAAFTYGDEVLVEEYIE 656 Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G EL+ V G + + EI VP S Y YE KY+ TH++PA I + +EV++ Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVP-SGRYDYESKYTPGGVTHLVPAPISAECRREVEQ 715 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A+ A GC G++R D L + + +E+N PGMT S+ P+ A G F EL Sbjct: 716 LARRAYAACGCNGLARVDLLLSA-ENQPYVIELNAVPGMTETSLVPDAARAVGIDFPELC 774 Query: 290 LWMVEDASCLR 300 ++ A R Sbjct: 775 EKILALAGYHR 785 >gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] Length = 368 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + S L+ + V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAISGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGIATLTEEQKAELGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + LD + + H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRVSNWD--GLDGAIAHARLHDPKVIVEGAIIGREVECGVLEFPNGDV 245 Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P +D FY ++ KY +PAK+ + +++ LA A +A+ Sbjct: 246 KASVVAEIRMPDADTDSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G+SR DF EIN PG T +S++P+M G +R L+ +V+ A Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAIAR 363 >gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] Length = 365 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 49/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AVL GG S+E E+SL S A L+ F + I +D+ Sbjct: 11 VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +V D+ F VLHG GEDG +Q +L+L++I Y + +L SA+ Sbjct: 71 ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 MDK+ SK++ + +PV P + N + I P IKP+ GGSSLG Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV------TEIAV 194 I IKKD + + + + ++L+E+ ++ E+ V+ + + Sbjct: 191 ITKIKKDTDLENAIELV--FTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEII 248 Query: 195 PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P+ +FYSYE KY + ++PA + ++++RLA + C G++R DF + Sbjct: 249 PRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEKR 308 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S+K+++ E+N PG T +S++P + +G ++ LL ++E A Sbjct: 309 SQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTR 354 >gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 356 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF----------------------------- 31 + ++ GG S+E +VS + + +A++ + Sbjct: 6 ICIIYGGKSAEHDVSKLTAQNVLNAIDKEKYLVDIIYITNDGLWKKKGNITATIESPEEL 65 Query: 32 ---KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V D+ + A D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 TLTDVEPEDITLLLKQSSAGEAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + + + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI +Q + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNDEQELKAGIAEAFQFDR--KLVIEQGINAREVEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLQIPAELDQEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ ++E A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIELA 341 >gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] Length = 347 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + +S P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLSYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENKEELRQAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] Length = 302 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 157/301 (52%), Gaps = 7/301 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG S EREVSLS K AL + G V +D + ++L D AF LHG+ Sbjct: 5 LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120 GEDGL+QA+L + PY + +S L+++K +K V G+ LV Sbjct: 65 PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PP IKP GGSSLG+ + + + + + ++ GD L+E+Y GIE+TCG Sbjct: 125 LQDLEPPVFIKPNSGGSSLGMTFARTAEELEKGI--ETVFSLGDSALVEEYTKGIEVTCG 182 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + + I P + +F+ Y KY+ + + PA I + +++Q++ AH+ +G Sbjct: 183 ILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLLG 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 SR+DF+ + LE+N PGMTP S+ P+ A AGYSF EL+ ++E Sbjct: 243 LTDYSRADFIISE--GVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIELGQRK 300 Query: 300 R 300 R Sbjct: 301 R 301 >gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4] gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae TIGR4] gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY N T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] Length = 388 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 106/360 (29%), Positives = 173/360 (48%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + VL GG S+E EVS +S A AL G++V + V R L L Sbjct: 20 IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79 Query: 48 --------------------------------------HLKPDLAFNVLHGNFGEDGLVQ 69 H D+ F VLHG +GEDG+VQ Sbjct: 80 AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHL-- 123 +LE L +PY GILASA+ MDK+ K+ + + GVP+ P + + R T D + L Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSS+GI + +D + + + H + +++EQ V G EL CGV+ Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAV--EEALRHDNLVVVEQGVTGRELECGVL 257 Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + + + + ++ Y+ KY V+PA +P ++ + ++ L+ A AIG Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DFL+D + +++ E+N PG T S++P++ A AG +++++ +V A R Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLVALAVERR 377 >gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 351 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 101/340 (29%), Positives = 163/340 (47%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S E EVSL+S ++ L AG +V + + R + Sbjct: 4 VMVVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGG 63 Query: 46 ----------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 LA +P D+ F VLHG +GEDG +Q +LEL +IPY +G+LASA Sbjct: 64 NAGSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASA 123 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSL 139 + MDK+ K+V + G+P + + R + P +KP GSS+ Sbjct: 124 VGMDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSV 183 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 GI + + L +++ + ++++E VD E+ V+G+ + +V+ EI + K Sbjct: 184 GISRAAEPGELAAALDAAAALDR--RIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRK 241 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY YE KYS PA +P + E++R+A A +AI G++R DF + + + Sbjct: 242 GDFYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGR 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T S++ + +G + LL ++E A Sbjct: 302 VLLNEINTIPGFTATSVYSRLWEASGLPYERLLERLIELA 341 >gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88] gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 301 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 170/297 (57%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+S+E+E+S +GK L+ + +++ I ++ L+ + AF LHG Sbjct: 3 IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 NFGEDG VQA+LE + +PY+ SG+LAS+L MDK SK+++ G+ I++ + Sbjct: 63 NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +S I P V+KP GGSS+GI ++KK+Q + + ++ +++LIE+Y+ G E+ Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I K +F++Y+ KY + A + L++ +V++++ ++ Sbjct: 181 TCCMLDGKPLPILSIKT-KEEFFNYKAKYFEGVAEE-KVADLSLELKDQVEKISNKCWKS 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R D + +V+ +EIN PGMT S+FP+ A G +F ELL ++E Sbjct: 239 FKLKVYGRIDMII--KGNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIE 293 >gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_07A21] Length = 363 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 6 VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 G L + D+ F +LHG +GEDG VQ +LEL + Y + Sbjct: 66 PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+ ASA+ MDK+ ++ + ++ G+P ++ R + P +KP Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEHDYPLFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192 GSS+GI Q + L +S + +L+IE+ V+ EL C V+G+ + + Sbjct: 186 NLGSSVGISKAHDRQGLQAGLELAS--QYDTKLIIERSVENARELECAVLGNEYPKASGV 243 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P ++FY Y KY S V+PA + + ++ LA +AI C G++R DF Sbjct: 244 GEIIPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVDFFM 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG TP+S++P++ A AG ++ +L+ +++ Sbjct: 304 RP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346 >gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 313 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 165/303 (54%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AV++GG S+E +S +G A A+AL++ G+K +++ + + L K D+ FN LH Sbjct: 10 IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q E+ IPYT G++ASA+ M+K+ SK + G+P P Sbjct: 70 GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAPFAYYFAAQSP 129 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P VIK GSS+G +++++ ++P + + ++++ + ++ EQ++D Sbjct: 130 AAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKE--AFSYSNSIIAEQFID 187 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM D + V +I V + Y Y KY+ + H+ PA + +++Q LA Sbjct: 188 GDEFTVAVMDDMAFPVIQI-VSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLALQ 246 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G++R D + D R F LEIN PGMT S+ P+ A G SF +L ++ Sbjct: 247 VFHLCHASGVARVDMMTDAAGR-PFVLEINTVPGMTETSLVPDAARAMGMSFADLCEKIL 305 Query: 294 EDA 296 ++A Sbjct: 306 QEA 308 >gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 365 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + + L+ F V + + VL P Sbjct: 8 VAVVFGGRSSEHTISCVSAGSVLAHLDRDRFDVVPVGITPDGAWVLGTDDPARLRIDGRT 67 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F VLHG FGEDG +Q + E+ Sbjct: 68 LPVVDGTGAALALPGDPTRGGLVRLDRDRAGEVFSGVDVVFPVLHGPFGEDGTIQGLFEM 127 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVI 130 +PY SG+LASA MDK +K+++++ G+ V +++ T Q + P + Sbjct: 128 AGLPYVGSGVLASAAGMDKEFTKKLLAAEGLAVGSLVVLRPGTQSLTAAQQERLGLPVFV 187 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189 KP + GSS+GI + LD +++ H ++L+E + G E+ CGV+ V Sbjct: 188 KPARAGSSVGITRVTSWD--RLDEAVAAARVHDPKVLVEAAIVGREVECGVLEYPDGTVR 245 Query: 190 ------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + ++FY ++ KY +PAK+ D+ + V+ A A +A+ C+G+ Sbjct: 246 ASLPAEIRLVSGSAEFYDFDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF E+N PG TP+S++P M A G + LL +V+ A Sbjct: 306 ARVDFFV-GDDGAPVVNEVNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTALAR 360 >gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555] gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016] gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555] gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 297 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 160/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SGK+ + ++ +++ I +D+ + D AF LHG Sbjct: 3 VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG++Q++ + ++IPY+ L S + MDK SK+++ S + I + Sbjct: 63 KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+ +I+K + I ++N+ ++++IE+Y++G E+ Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAARL--AFNYDEEVMIEKYIEGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ +L + I K F+ Y KY+ S ++ + + +++ ++ + Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEISLKCWEL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+G R D + + + LE+N PG+T S+FP+ A SF ELL +++ Sbjct: 240 FKCKGYVRVDMIL--KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQ 294 >gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Taiwan19F-14] gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Taiwan19F-14] gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA04375] Length = 347 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRPAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 366 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG+SSE EVS S L+ +++ I + + Sbjct: 11 VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKEGRWLYTEADSAQMADGSWE 70 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL IP Sbjct: 71 ELPGNMPCVLSPDRADHGLILFTPAGQVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ ++S + P Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIESDPDGVCDGVIAKLGWPIF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + +++ E +VDG E+ C V+G Sbjct: 191 VKPANAGSSVGITKAHDRDELKAAIRLALA--NDRKVVFEAFVDGHEVECAVIGSDPAVS 248 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA++P + EV+ A +A+ A+GC G++R D Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLPEEKLDEVKTYAAMAYTALGCEGLARCD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++ A Sbjct: 309 FFVEKDTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357 >gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 386 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 25 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84 Query: 45 --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 L ++P D+ F ++HG GEDG +Q +L + + Sbjct: 85 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + + P +K Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A + Sbjct: 205 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 262 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 323 FL-CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 369 >gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From Xanthomonas Oryzae Pathovar Oryzae With Adp Length = 384 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVSL S + AL+ F+ I +D+ Sbjct: 23 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82 Query: 45 --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77 L ++P D+ F ++HG GEDG +Q +L + + Sbjct: 83 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + + P +K Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + +++H ++L+E V G E+ C V+G+A + Sbjct: 203 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 260 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FYSY KY S + V+PA I + +Q++A A+QA+GC G++R D Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 321 FL-CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 367 >gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54] gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974] gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974M2] gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54] gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54] gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104] gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41301] Length = 347 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S K A++ F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 47 -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 A + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R +S + P +K Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFYSY+ KY + V+PA + I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLELA 350 >gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] Length = 362 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + L A PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + + L + ++ + + ++EQ ++ E+ V+G+ + T V F Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y KY +PA+IP + + Q A A+ +G G+SR DF ++F Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] Length = 355 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S+E VS S A L+ F+V I + R Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 49 -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F +LHG +GEDG +Q + EL IPY Sbjct: 67 EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+++S+ G+PV P ++V T++ + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194 SS+G+ + P + + D++L+E + G E+ GV+ D L + A+ Sbjct: 187 SSIGVSKVSDWADFPEAVRIAL--EDDDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY +E KY T +PA P ++ +++ +A A +A+ C G+SR DF Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASAEAR 353 >gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 372 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 30 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 90 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 150 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 210 ENHEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 360 >gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255] Length = 299 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G E Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGL--EVDEFVMIEKYIPGGE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ I S F+ YE KYS + ++ K V ++ + Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] Length = 347 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 347 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] Length = 391 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 25 VAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAITDRK 84 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 85 VPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 144 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL +PY +G+LASA+ DK K+V S G+PV P +V D+ Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARERIV 204 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P IKP +GGSS+GI + + LD + H + L+E + G E+ Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDSVE--GLDAAIEEARRHDPKFLVESLLRGREIE 262 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EV+RLA Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKY-IDSAAGLVPAPLTEEQTAEVRRLAVA 321 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ C G+ R+DF EIN PG TP+S++P M +G + EL+ ++ Sbjct: 322 AFDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLI 380 Query: 294 EDA 296 + A Sbjct: 381 QAA 383 >gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630] gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26] gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932] gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42] gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55] gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34] gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79] gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196] gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291] gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58] gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Clostridium difficile] gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196] gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291] Length = 299 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G E Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGL--EVDEFVMIEKYIPGGE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ I S F+ YE KYS + ++ K V ++ + Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 298 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 86/299 (28%), Positives = 151/299 (50%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSE+EVSL SG+ + ++ I + + D AF LHG Sbjct: 3 VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QA+LE L+IPY+ +L SAL M+K +K++++S + IL+ + Sbjct: 63 RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ P ++KP GGSS+G ++ + + + ++ + ++LLIE+Y+ G E+ Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKTDLLSAIDE--AFKYDEELLIEEYIAGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ I F+ Y KY+ + + A +P + +V ++A Sbjct: 181 TSFVLDGEVFPTVCIKPRFGQFFDYNSKYTINGALEEI-ALLPSILQDKVTQIAEKIWAL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+ R DF+ + ++ LEIN PG+T S+ P+ A G F L+ ++ + Sbjct: 240 FNCKSYCRIDFII--KNETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLIDAIIRTS 296 >gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 368 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S S + +AL+ ++V + + R+ VL P Sbjct: 9 VAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGSDPAELAISARR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTAESGAAIMLNADPSHSGLMVLDATAGPRALADVDVVFPVLHGAYGEDGSIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ ++ G+P+ P +++ T + + P + Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYVVLRSGMTLTEQDKQRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP + GSS GI I + D +++ ++L+E V G E+ CGV+ + V Sbjct: 189 KPSRAGSSFGITKISDWAEL--DAAVATARQIDSKVLVEAAVVGREIECGVLEGEAGGVP 246 Query: 191 E-------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 E V + DFY +E KY S + +PA + + ++VQ A A A+ C Sbjct: 247 EASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGLSERVTRQVQEYAVRAFTALDCA 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R+DF P ++ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 307 GLARADFFVTP-ELDIYLNEINTMPGFTPSSMFPRMWAASGLEYPKLVNRLIRTA 360 >gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] Length = 330 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 173/308 (56%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GG S ER++SL SG AC AL +AGF +V +D+ L + D+AF L Sbjct: 11 VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRFDVAFVAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NR 115 HG +GEDG +Q +LE+L IPYT SG+LASA+ +K +K + G+PV + + R Sbjct: 71 HGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEGTR 130 Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T D + P +KP GSS G+ + + + + +++S GD++L+E Sbjct: 131 LTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAAS--EGDRVLVETC 188 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V+G E+T V+G+ +L + EIA S+FY ++KY HV+PA++ Y+ Sbjct: 189 VEGTEITVPVIGNDDPVALPIVEIAF-DSEFYDAKVKYEPAALHHVIPARLDQTTYERAS 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+A+GCRG+SRSDF+ V LE N PGMT S+ P+ A +AG F +L Sbjct: 248 ELAVRAHRALGCRGVSRSDFIVTAEGAPV-ILETNTIPGMTETSLLPDSARHAGIGFPDL 306 Query: 289 LLWMVEDA 296 VE A Sbjct: 307 CRRFVELA 314 >gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] Length = 351 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 172/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G + AL + G V +DV D+ L Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129 +L I YT +G L+SAL+MDK +KQ+ + G+P I + NR + + P V Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D L+IE+YV+G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVIDYKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++P +I +++Q A + +G SRSDFL Sbjct: 241 IEIA-PIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +++ LE N PGMTP S+ P+ A G +F +L ++E Sbjct: 300 LNK-NNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343 >gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct] Length = 347 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S ER+VS +SG AL AG +V +D + + Sbjct: 8 VAVLFGGSSEERDVSTASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D R ++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 367 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 157/365 (43%), Gaps = 71/365 (19%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 2 AVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRKV 61 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ F VLHG +GEDG +Q + Sbjct: 62 PDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQGL 121 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------- 124 LEL +PY +G+LASA+ DK K+V S G+PV P +V D+ Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIVD 181 Query: 125 -----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P IKP +GGSS+GI + D LD + H + L+E + G E+ C Sbjct: 182 FAGEHGWPLFIKPARGGSSMGITKV--DDLSGLDAAIEEARRHDPKFLVESLLRGREIEC 239 Query: 180 GVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 GV+ AS+ V DFY +E KY ++T ++PA + + EVQRLA A Sbjct: 240 GVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSATGLVPAPLTGEQTAEVQRLAVAA 298 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 299 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQ 357 Query: 295 DASCL 299 A Sbjct: 358 AALTR 362 >gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] Length = 348 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 168/341 (49%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDR---------------- 40 + V+ GG SSE EVS+ S K +AL + + +D+ Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67 Query: 41 --------SVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + L +L D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137 L MDK+ K V S +P P + +N+ + + +I+ P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196 S+GI + + + + +++++E+ ++G EL CGV+G + + + + K Sbjct: 188 SVGITKAYSKEEFITGI--EFAAKYDERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245 Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346 >gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613] Length = 300 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] Length = 324 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 161/318 (50%), Gaps = 27/318 (8%) Query: 3 VLMGGISSEREVSLSSGKACASAL---------------------EDAGFKVSQIDVDRS 41 ++ GG S E EVSLSS + +A+ + A S + + + Sbjct: 8 LIAGGRSGEHEVSLSSARGVLAAMPHPTDLAVIAKDGKWLLGQAAQRALHTGSAEEGEHA 67 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +AF +LHG GEDG +Q E+L +PY +G+ ASAL MDK K+V++ Sbjct: 68 FPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKRVLA 127 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 G+PV P + R PY +KP GSS+G+ +K DQ L ++ W+ Sbjct: 128 QAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAFRWD 187 Query: 162 HGDQLLIEQYVDG-IELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 +++IEQ ++G EL ++G+ A V +S+FY Y+ KY+ + +PA+ Sbjct: 188 R--KVVIEQGLEGVRELEIALLGNIYAEPSVIGEISYQSEFYDYQTKYTEGLAHMRIPAR 245 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 IP ++ K ++ LA A++ +G RG++R DF ++ E+N PG TP S++P++ Sbjct: 246 IPAELEKRIRELAVAAYRVLGVRGMARVDFFLS-QDGTLYLNELNTIPGFTPTSMYPKLW 304 Query: 279 AYAGYSFRELLLWMVEDA 296 +G + ELL +V A Sbjct: 305 QASGMRYPELLDRLVRLA 322 >gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51] gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 353 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 149/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E VS+ S A L+ ++ I + ++ L Sbjct: 6 IAIIFGGCSEEHPVSVKSAGEVAKNLDLDKYEPFYIGITKNGVWQLCRYPEANWENGICP 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + DL F VLHG FGEDG VQ +LEL IPY I Sbjct: 66 SVILSPDRSLQGLLVLEQGQYKTIPLDLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVAGNAGIATPKFRTVTAKEAIDAERLAYPVYVKPARSGSSFGVTKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + +S + ++LIE+ V G E+ C + G+ + +V +I + F Sbjct: 186 RQEELLSAVAIAS--QYDSKVLIEEAVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST ++PA I VQ A ++A+GC+G++R D +V Sbjct: 244 HQENEPEKGSENSTLIVPADISPQARSRVQETAKAIYRALGCKGLARVDMFL-KEDGEVI 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S FP M A AG F E++ +V A Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340 >gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653] gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653] Length = 390 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 155/363 (42%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L P Sbjct: 24 VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADAPERMAIADRQ 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 LPSVERLAESEEGSVVLPVDPSSREVVYSEPGAVPKALGDVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVLRPRDWERDPAAARARIT 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + D + H ++++E + G E+ Sbjct: 204 DFAAEHGWPVFVKPSRAGSSIGITKVDGPEQL--DEAIEEARRHDPKVIVEALLRGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY + V+PA + + + VQ LA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKY-IDAAPGVVPAPLTAEETERVQELAVR 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ C G+ R+DF + EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 321 AFDAVSCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 379 Query: 294 EDA 296 + A Sbjct: 380 QAA 382 >gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065] Length = 300 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335 >gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNVGISYPELIERLVDLA 335 >gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514] Length = 304 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ REVSL +G A A AL G +V ++D + A + + F LHG Sbjct: 12 ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGTE--VVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP V+KP++ GSS+G+ + + L ++ + Q+L+E+ + G E T G Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ L + E+ PK+ Y Y+ KY++ + ++ PA + +Q A A +AIG Sbjct: 188 ILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R S D + P + + LE+N PGMT S+ P+ A AG + EL MV+ A Sbjct: 247 RDYSXVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301 >gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 154/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG S+E ++S+ + + + + V + + + + Sbjct: 3 VVVIYGGKSAEHDISILTAGSIIKEIYFEYYDVEPVYITKEGTWLKGEALKAPVAFDQAL 62 Query: 50 -----------------------------KPD-LAFNVLHGNFGEDGLVQAILELLEIPY 79 PD + F +LHG GEDG +Q + E+L++PY Sbjct: 63 RLTEGLEARFATVEGEVSTGVRIQPSDIAGPDTVVFPILHGPNGEDGTIQGLFEILDLPY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVI 130 G+LASA MDK+ SK + G+P P + + + + P + Sbjct: 123 VGCGVLASANGMDKIASKHLFQQAGIPQVPFVPFVKADFKKSPEAIYNRIEGTLRYPVFV 182 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + + + ++++EQ +D E+ V+G+ + Sbjct: 183 KPANMGSSVGISKATNREELTAAI--EEALKYDRRIVVEQGIDAREVEVAVLGNDEVNTS 240 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V V ++ FY Y KY + +T +PA IP ++ +++ A A +AI G++R DF Sbjct: 241 VVGEVVKQAGFYDYNEKYINNTTTLQIPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDF 300 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++VF E+N PG T S++P++ G S+++L+ ++ A Sbjct: 301 FLTE-TQEVFINEVNTMPGFTQFSMYPKLWEAMGISYKDLVEELIRLA 347 >gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] Length = 301 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLVR--DNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 390 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKP-------- 51 + +L GG S+E +S S AL+ + + V + +D V L P Sbjct: 33 LVLLFGGRSTEHAISCVSAGGVLRALDRSRYDVIPVGIDPEGRWVVLPEDSPVLTAVSAD 92 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +L+ Sbjct: 93 LPTVNAADGIEVTLTPDPTKPRLLVSDPSSPLRDLGTVDVVFPLLHGPFGEDGTIQGLLD 152 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130 + +PY SG+ ASA +MDK K+++++ G+PV P +V S+ L+ P + Sbjct: 153 MSGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYTVVRPGQTLSETERELLGLPVFV 212 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183 KP +GGSS+GI + D LD ++ + ++L+E + G E+ CGV+ Sbjct: 213 KPARGGSSIGISRV--DAWADLDTAFKAARSSDPKVLVEAAIVGREIECGVLDRLDGSGP 270 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +AS+ + FY +E KY S + +PA++P ++ + V+ A A++A+ C G+ Sbjct: 271 EASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPHELTERVRATATAAYEALDCAGL 330 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R D P + E+N PG T S+FP++ A +G F L +V+ A Sbjct: 331 ARVDMFVTPA-GDIVLNEVNTMPGFTSTSMFPQVWAASGLDFAALTDRLVQLA 382 >gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585] gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae 70585] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] Length = 303 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 154/294 (52%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ERE+SL + KA AL G+++S IDV + + + F +HG Sbjct: 9 IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDAE--ICFLCIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q +L IP+T S +S + DK SK + G+P P +V Sbjct: 67 SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDG---K 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PPYVIKP + GSS+GI + + + + +S+ ++H +L E + G ELT G Sbjct: 124 KIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDH--VVLAEALITGKELTVG 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI PK FY Y KY+ ST+ PA + +D VQ+ A A +GC Sbjct: 182 ILDGKALPVVEIK-PKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLGC 240 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R D + + + LEIN PGMT S+FP A +G +F +L ++E Sbjct: 241 SVYGRVDIILS-DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293 >gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] Length = 361 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ +++ I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNEGEWKKKENITEEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VLNDVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEKELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA++ D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKVRLQIPAELDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLIDLA 346 >gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031] gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae P1031] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] Length = 300 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 19/305 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L+ AG D R L + F L+G Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 G +Q +LE L++PYT S ++ASAL+MDK+RSKQV + G+PV P + ++R D Sbjct: 65 R----GSLQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + L+++ H D++LIE++ Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPALVEAL--RHDDEILIEKW 178 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD I + + FY YE+KY S + + P+ + + + + L Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADA-FYDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + LE N PG S+ P A AG SF L++ Sbjct: 238 RRAYKALGCSGWGRVDVIQDTS-GEFCLLEANTAPG--SHSLTPMAACQAGMSFSPLVVR 294 Query: 292 MVEDA 296 ++E A Sbjct: 295 ILELA 299 >gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 331 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 157/331 (47%), Gaps = 39/331 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S ER+VS++S AL G +V +D ++ Sbjct: 3 IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F LHG GEDG +QA+L+L + YT S + Sbjct: 63 PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA++MDK SKQ+ + GVP ++ + + + P V+KP K GS++G+ V++ Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + N+ D+++IE+++ G E T G++ +L V EI VP ++ + Y K Sbjct: 183 EASELAKAI--ELAMNYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVP-NEIFDYHAK 239 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y ++ + PA I +Q +A AH A+ SR DF + V+ LE N Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRV-EDNGAVWCLEGNSL 298 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PGMT S+ P+ A AG F ELL + A Sbjct: 299 PGMTANSLLPQAARAAGIEFPELLERICRGA 329 >gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured actinobacterium HF0200_46I24] Length = 364 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 54/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 8 LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67 Query: 41 -----------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 G L + ++ F +LHG +GEDG +Q +LEL + Y +G Sbjct: 68 DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 + ASA+ MDK+ ++ + ++ G+P ++ R + P +KP Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA 193 GSS+GI + Q + L +S + +L+IE+ V+ EL C ++G+ + + Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRF--DTKLIIERSVENARELECAILGNDYPKASGVG 245 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P +FY Y KY S V+PA + + VQ LA A +AI C G++R D Sbjct: 246 EIIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFM- 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P++ A AG + +L+ +++ Sbjct: 305 CSDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQ 347 >gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] Length = 350 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAHLK------ 50 + ++ GG S E VS+ S L + V I +D L Sbjct: 8 IGLVFGGRSGEHNVSIRSAATVVRGLRSGQNRKRYTVQPIYIDLEGRWWGTDLSEATLSS 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 DL + VLHG GEDG +Q + +L P+ +G+L Sbjct: 68 ETAPELNPPLPPSGFQGFPKGCDAVDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135 SA+SMDK+ K +S G+ P + ++ +++ + ++ PY +KP Sbjct: 128 SAVSMDKLAMKSAFASAGLSQVPYVALHASELENAISRSALLDRIERELNYPYFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + + L Q+++ +L++EQ V+ E+ C V+G L+ + I Sbjct: 188 GSSVGISKVRSRKELEAGLDQAAAL--DPRLVVEQGVNAREVECAVLGGRMLEASLIGEV 245 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y YE KY++ ST ++PA +P ++ ++ A A A+G G+ R DF +D Sbjct: 246 RFDADWYDYETKYTAGRSTTLIPAPLPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDA 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S+FP + A +G + +L+ +++ A Sbjct: 306 NDQLWINEINTLPGFTAQSMFPMLWAASGVTVEQLVHKLIQTA 348 >gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1] gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1] Length = 360 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 155/351 (44%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE E+S+ S KA ++ ++ + + + + R Sbjct: 6 VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 ++AF VLHG +GEDG +Q +LE+ Sbjct: 66 LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPP 127 IPYT + +S+++MDK +K G+ V + V R + +PP Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 + +KP GSS+GI I + L ++ ++L+E+ ++G E+ V+G+ Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRL--DVKILVEKAIEGREVEVAVLGNEHP 243 Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V P DFY + KY ++ +PA++ D +Q A +A+GC G+SR Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + S ++ EIN PG T +S++P + +AG F EL+ +V A Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354 >gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] Length = 351 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 44/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL S + +A+ ++V + + R + Sbjct: 3 IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62 Query: 46 ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P IKP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + + L + ++ + + ++EQ ++ E+ V+G+ + T V F Sbjct: 183 TKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y KY +PA+IP + + Q A A+ +G G+SR DF ++F Sbjct: 241 YDYNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + G + +L+ +++ Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334 >gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 301 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 339 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 178/312 (57%), Gaps = 17/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S ER++SL SGKA AL+ + +IDV+ + L + PDLAF LHG Sbjct: 19 ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S G+ +++R + Sbjct: 79 PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI-------------PLDLLQSSS-WNHGDQ 165 ++ I PYV+KP+ GSS+G+ + + + + W D Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++IE+Y+ GIEL V+ D + EI PK+ FY Y+ KY++ + H+ PA+IP +IY+ Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIR-PKNKFYDYKAKYTNGFAEHIFPAEIPDNIYE 257 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS 284 A H+ +GC+ ISRSDF ++P + LEIN PG T +S+ PE+A G Sbjct: 258 MTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGID 317 Query: 285 FRELLLWMVEDA 296 F EL+ ++ED+ Sbjct: 318 FNELVKIIIEDS 329 >gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] Length = 343 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 105 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 165 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 166 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 223 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 224 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 283 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340 >gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVDLA 335 >gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 301 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] Length = 366 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 +A++ GG S+E +VSL S K + L+ F + I ++ +L P Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 PY I++SA MDK +K+++ G+ V P I + ++ H + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + ++ L ++ + ++++E + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEEEFNAAL--EMAFEYDLKVIVESAIVGREIECAVLGNEDPEVSP 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V FY+Y KY + V+PA + + ++++A A++ + C G++R D Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ AG ++ L+ ++E A Sbjct: 304 FLT-QDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIELA 350 >gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] Length = 779 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 171/311 (54%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K + GSS+G+ ++ ++ + L + ++++G ++L+E+++ Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDE--AFSYGGEVLVEEFIA 650 Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT V G+ +L V EI S Y YE KY+ S H++PA I + EVQ Sbjct: 651 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 709 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 710 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 768 Query: 290 LWMVEDASCLR 300 ++E A R Sbjct: 769 EKILEMAGYQR 779 >gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 347 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104] gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104] Length = 369 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 9 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+ ASA MDK +K++ ++ G+P+ ++ + + + P Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----- 184 +KP +GGSS+G+ + + D +++ +H ++++E + G EL CGV+ Sbjct: 189 VKPARGGSSIGVSRVSSWDEL--DAAVAAARDHDPKVIVEAAIAGRELECGVLEMPDGTV 246 Query: 185 ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V EI V + FY + KY + +PAK+ +I V+ LA A +A+ Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALTR 364 >gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] Length = 390 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 161/363 (44%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ +G A +++ + + V I + G VL +P Sbjct: 24 VAVVFGGRSSEHGISVVTGGAVLGSIDRSRYDVLPIGITTEGGWVLTADEPARMAITERT 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG Q Sbjct: 84 VPDVDALAEPGEGTVVLPVAPGNREVLYSEPGSVPKALGDVDVVFPVLHGPYGEDGTFQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL IPY SG+LASA+ DK K+V +S G+PV P +++ Sbjct: 144 LLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYLVIRPREWDADEAAARARVI 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + LD + + H ++L+E + G E+ Sbjct: 204 DFAGEHGWPLFVKPARGGSSVGITKVDGPE--GLDAALAEARRHDPKVLVESLLRGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EVQRLA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKY-IDSAPGLVPAPLTEEQTAEVQRLAVE 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P M +G + L+ +V Sbjct: 321 AFEAASCEGLVRADFFLTE-DGGFVINEINTMPGFTPISMYPRMWQESGVDYPALVDQLV 379 Query: 294 EDA 296 + A Sbjct: 380 QAA 382 >gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 335 >gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 301 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V + V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 385 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 71/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITADGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D F +LHG +GEDG +Q Sbjct: 79 TPNVEELAESDEGGVVLSVDPGSREVVYSEPGSVPKALGEVDAVFPMLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V S G+PV P ++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWANDPAAARKKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P IKP +GGSS+GI + D LD + + H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFIKPARGGSSMGITKV--DDLAGLDDAIAEAQRHDPKILVESLLRGREIE 256 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ ++PA + + EVQRLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKY-IDSAAGLVPAPLTDEQTAEVQRLAVA 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A C G+ R+DF + EIN PG TP+S++P M +G ++ EL+ ++ Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQESGVAYTELVDRLI 374 Query: 294 EDASCL 299 + A Sbjct: 375 QAALTR 380 >gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032] gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032] Length = 360 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 154/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + + Sbjct: 5 LGLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRML 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 A K D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 65 QFEQNAKTFLPTSLNESMFPQPTSADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGN 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K V + G+ + N+ + + ++ P +KP Sbjct: 125 GVLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI + + + ++ + ++++E+ V G E+ GV+G+ V Sbjct: 185 NMGSSVGISKCRSKEELQTAFDL--AFQYDRRVVVEEGVVGREIEIGVLGNDEPKCSVVG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA + D YK + +A A +++ G+ R+DF Sbjct: 243 EIAPKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLT 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + + G + EL+ +V A Sbjct: 303 EK-GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346 >gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41317] Length = 347 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 304 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+YV G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYVKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] Length = 364 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG+SSE EVS S ++ + ++V + + + + Sbjct: 9 VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL I Sbjct: 69 ELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 Y G+LAS++ MDK + + + GVP + NR+ ++ + + P Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + + +++ E +VDG E+ C V+G Sbjct: 189 VKPANAGSSVGISKVSNQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG T +S++P++ + G +L+ ++ A Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] Length = 362 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 161/349 (46%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E EVSL S A S L+ + + + + + Sbjct: 7 IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66 Query: 42 --------------------VGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 VG L P D+ F VLHG +GEDG +Q + EL PY Sbjct: 67 ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKP 132 G+ ASA+ MDK K ++ +P+ P +LV R + + + + P +KP Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ ++ + L +++ H ++++EQ + E+ V+G+ ++V+ Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAA--RHDRRIVVEQGISAREIEISVLGNEHVEVSIP 244 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P ++Y Y KY + S ++PA + +VQ LA A QAI G++R DFL Sbjct: 245 GEIIPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFLL 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 D ++ E+N PG TP+S++ +M +G + +LL ++E A Sbjct: 305 DREQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIELALAR 353 >gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium ATCC 25291] gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 369 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 9 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+ ASA MDK +K++ ++ G+P+ ++ + + + P Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----- 184 +KP +GGSS+G+ + + D +++ +H ++++E + G EL CGV+ Sbjct: 189 VKPARGGSSIGVSRVSSWDEL--DAAVAAARDHDPKVIVEAAIAGRELECGVLEMPDGTV 246 Query: 185 ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V EI V + FY + KY + +PAK+ +I V+ LA A +A+ Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALAR 364 >gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 301 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152] gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152] Length = 363 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 164/356 (46%), Gaps = 61/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++ I + G VLA+ Sbjct: 7 VAVVFGGRSNEHAVSCVSAGSVLRHLDPTRYEAVPIGITPQGGWVLANSDVAAIGLSHEA 66 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F +LHG FGEDG +Q +LEL Sbjct: 67 LPSVDAGGTALTLTADPTRGGELVALDDAGAVLGTVDVVFPILHGPFGEDGTLQGMLELA 126 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIK 131 +PY G+LASA MDK +K+++++ G+PV +++ T + + + P +K Sbjct: 127 GVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRERLGLPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189 P + GSS+GI + D LD +++ H ++++E + G E+ CGV+ D + Sbjct: 187 PARAGSSIGITKV--DDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVLEFPDGRISA 244 Query: 190 T---EIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + EI +P+ D FY ++ KY +PAK+ DI ++V+ LA A QA+ C+G+ Sbjct: 245 SVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRAFQALDCQGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M G + L+ ++E A Sbjct: 305 ARVDFFVTADG--PVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIETALAR 358 >gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] Length = 347 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335 >gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1] gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 343 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 160/341 (46%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHL- 49 + +L GG S E EVS+ S G ++V I +++ Sbjct: 6 VGLLFGGRSREHEVSVVSAAAIAQAFAAGDN------GDRYEVIPIYIEKDGRWRHTERV 59 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HG GEDG +Q +LEL++ PY SG+ ASA+ Sbjct: 60 GIPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAI 119 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137 MDK+ K V + G+P P + + R + S + + P +KP GS Sbjct: 120 GMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGS 179 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVP 195 S+GI K Q + L ++ ++++E V EL C V+G+ V Sbjct: 180 SVGISKAKNRQQLTTALEVAA--ELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITY 237 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S+FY YE KY+ + +PA+IP + ++++ L+ A QA+G G++R DF + P + Sbjct: 238 SSEFYDYETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTG 297 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ A +G SF EL+ +V+ A Sbjct: 298 EVLINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338 >gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 366 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG+SSE EVS S L+ +++ I + + Sbjct: 11 VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKDGRWLYTEATSAQMADGSWE 70 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + ++ D+ VLHG +GEDG VQ +LEL IP Sbjct: 71 ELPGNMPCVVSPDRADHGLILFTPAGQVEKVRADVVIPVLHGLWGEDGTVQGLLELAGIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ ++ + P Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIECDPEGVCDGVIAKLGWPIF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + +++ E +VDG E+ C V+G Sbjct: 191 VKPANAGSSVGITKAHDRTELKEAIRLALA--NDRKVVFEAFVDGHEVECAVIGSDPAVS 248 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PAK+P + EV+ A +A+ A+GC G++R D Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPAKLPEEKLDEVKTYAAMAYTALGCEGLARCD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++ A Sbjct: 309 FFVEKNTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357 >gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] Length = 311 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 13/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVL GG S ER VS+ SG A AL + + D + L+ + DL NVLH Sbjct: 7 IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q +LE+ +P+ S +L+SA++M+K SK+V + G+ V I++ R Sbjct: 67 GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126 Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S + ++ P VIKP+ GSS+GI +++ D I + ++ +++L+E+YV+G Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGI--EKAFEFAEEILVEEYVEGR 184 Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T V+G ++ L + EI +S F+ ++ KY + S + PA + DI ++ + Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+++ CR SR+D + +++ LE N PGMT S+ P A G+S LL Sbjct: 245 KKAHRSLRCRDWSRTDMMIKK--DQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302 Query: 292 MVED 295 M+E Sbjct: 303 MIET 306 >gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] Length = 321 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 97/320 (30%), Positives = 157/320 (49%), Gaps = 33/320 (10%) Query: 3 VLMGGISSEREVSLSSGKACAS----------------------ALEDAGFKVSQIDVDR 40 ++ GG S E EVSL+S + AL KV+ + Sbjct: 7 LIAGGKSPEHEVSLASAEGVLKHMPFPTELAVIAKDGAWLLGEEALRALEAKVAP-KGEH 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + + F +LHG GEDG +Q LE+L PY +G+ SAL MDK SK+V+ Sbjct: 66 PFPPPLDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKRVL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + G+PV P + + R PP+ +KP GSS+GI +++ + L ++ Sbjct: 126 AQAGIPVVPWVALYRGETPLVP-FEPPFFVKPANTGSSIGISRVERYADLEEAL--EEAF 182 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 H + ++E+ + G EL GV+G+ + V E+ ++ FY YE KY+ + ++P Sbjct: 183 RHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 241 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ +A A++ +G RG++R DF +++ E+N PG TP S+FP Sbjct: 242 APLDPGTEETVQEMALKAYKVLGLRGMARVDFFL--AEGELYLNEVNTIPGFTPTSMFPR 299 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G ++ ELL +VE A Sbjct: 300 LFLAKGLTYPELLRRLVELA 319 >gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 370 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 155/359 (43%), Gaps = 61/359 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + +L GG S E +S ++ A +A++ F+V + + V A P Sbjct: 10 VMLLFGGRSGEHMISCATASAVMAAIDRERFEVVPVGITLEGQWVPALDDPQHYALKDGE 69 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L+ Sbjct: 70 GAFVEAQGTQVAFLAGTNRLVEFSASNPEVFKDLGEVDVVFPLLHGPFGEDGTIQGLLDT 129 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 ++ Y G+ ASA MDK +K ++ G+PV L+ + + Sbjct: 130 ADVRYVGCGLTASAAGMDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGE 189 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182 +KP + GSS+GI + + + + H ++++E G EL CGV+ Sbjct: 190 VVFVKPNRAGSSVGITRVADFTQLEAAV--EEARRHDPRVIVEAATPGRELECGVLEFLD 247 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCR 241 G + V EI V +DFY +E KY ++ + +PA IP + +Q A A+GC Sbjct: 248 GPRASAVGEITVSGADFYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCE 307 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+SR DF ++ + ++ EIN PG TP S++P M G S+ EL+ +++ A R Sbjct: 308 GLSRVDFFYNEETDELSLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366 >gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] Length = 366 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 162/350 (46%), Gaps = 55/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S+E EVSL S A++ + ++ I VD+ L + Sbjct: 11 VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+AF+VLHG GEDG VQ +L +L I Sbjct: 71 AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 PY +L SA+ MDK +K+V+ GVPV PS+ + R + + + P IK Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLRTGDAAPDVDAIIGQLGLPLFIK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + ++ + ++L+EQ + G E+ V+G+ S +V+ Sbjct: 191 PASQGSSVGVSKVTDR--AGFAAALALAFRYDAKVLVEQGISGREIETAVLGNDSPEVSV 248 Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + +FY+Y+ KY + V+PA +P I ++++A A+ A+GC ++R DF Sbjct: 249 CGEILANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARVDF 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 ++ E+N PG T +S++P++ +G + L+ ++ A Sbjct: 309 FLTDQ-GQILLNEVNTLPGFTSISMYPKLWEASGLDYPALVDRLIVLARA 357 >gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+ EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341 >gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] Length = 314 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 166/312 (53%), Gaps = 20/312 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAF 55 + VL GG S EREVSL SG ASAL + G+ V +ID + + + +P L F Sbjct: 4 IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG GE+G +QA L L I +T SG AS SMDK SK + + G+PV IL+ Sbjct: 64 NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123 Query: 116 FTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 ++ + + P ++KP GSS+GI ++ + + + ++ ++H Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS-- 181 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+E+Y+ G ELT ++ + V EI P +Y Y KY+ + + PA+I + K Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIK-PLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +Q A +A G G +R DF +D L K ++LE+N PGMT +S+ P A AG SF Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298 Query: 286 RELLLWMVEDAS 297 +ELL ++ A+ Sbjct: 299 QELLQKIIYIAA 310 >gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] Length = 383 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 154/360 (42%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG SSE +SL + ++ A++ + V + + L Sbjct: 19 IAVVFGGRSSEHSISLITARSVLRAIDRDRWDVVSVGISTDGAWFLCSQEELEALLDDQP 78 Query: 47 -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71 D F +LHG FGEDG +Q + Sbjct: 79 MAQLPVGVHRVSLPLQTGDSRLLIHDTSEHGAPLSRGRHIDAVFPLLHGPFGEDGTLQGM 138 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHL 123 LEL ++PY G+ ASA+ MDK K + G+ V P +V+ T ++ Sbjct: 139 LELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVVHDRTWRTDPLGVREAVAE 198 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP + GSS GI + D+ LD +++ H +L++E +DG E+ C V+G Sbjct: 199 LGFPVFVKPARAGSSFGITRV--DEPSQLDAAIATAREHDLKLVVEAGIDGREIECAVLG 256 Query: 184 DASLD------VTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 D EI V Y +E KY S +T PA++P + ++R A A Sbjct: 257 GHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCPARLPEHVIDTLRRDAVRAFH 316 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR DF R V EIN PG TP+S++P M A +G + L+ ++ A Sbjct: 317 AVDGEGLSRCDFFVTADER-VLINEINTMPGFTPISMYPRMWAASGIDYSALIDELITLA 375 >gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] Length = 347 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 377 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123 +LE L +PY GILASA+ MDK+ K+ + + VP P + + T + Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSS+GI + ++ + ++ H +L+EQ V G EL CGV+ Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDNLIAAV--EEAFRHDHVVLVEQGVTGRELECGVL 244 Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + + + + ++ Y KY ++PA +P ++ + ++ L+ A AIG Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL+D + +F E+N PG T S++P++ A +G ++ +++ +V A Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVVDRLVALAFTR 363 >gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 349 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E EVSL S + + + + I + R+ Sbjct: 6 IAVIFGGNSTEYEVSLQSAFSVFENINHDKYDIIPIGITRNGDWYHYKGRYENIANNTWS 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + DL F +LHG GEDG +Q + EL IP Sbjct: 66 GDRDNLYPVTVSVSHSQKGIWEFDEDQYTAVHIDLVFPILHGKNGEDGTLQGMFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 LASAL MDK R+ ++VS GV V S+ R ++ + +S P +KP+ Sbjct: 126 VIGCNTLASALCMDKDRAHKLVSLAGVKVPKSVTFKRSEKNTALKKIETELSYPLFVKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I + S++ H ++++E+ + G E+ C ++G +L V I Sbjct: 186 RAGSSFGITKVTEQAEINTAI--ESAFEHDTEVIVEEAIGGFEVGCAILGIDNLTVRRID 243 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + + F+ Y KY+ S +PA++ K VQ A ++A+GC G +R D + Sbjct: 244 EIELSNGFFDYTEKYTLKTSKIHMPARLSPKEEKRVQETAVAIYKALGCSGFARVDMFYT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P ++ + E+N PG+T S +P M G SF ++L ++ Sbjct: 304 PS-NEIIFNEVNTIPGLTSHSRYPNMMKGIGLSFADMLDKLI 344 >gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] Length = 358 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 58/350 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 V+ GG+SSE E+S S + + L+ + ++ + + + VL P Sbjct: 9 VVFGGVSSEHEISCLSAASILAQLDSSRYEAVPVGITKEGDWVLDRRPPEVLGDKLGGLP 68 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q +LE +P Sbjct: 69 QVDASAPRVALAVGRTGSGELRQVSDGALVATADVVFPVLHGPFGEDGTLQGLLEFANLP 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLK 134 Y G+ ASA MDK + K ++ G+PV P + + + P +KP + Sbjct: 129 YVGCGVFASAACMDKTQMKVLLRGGGLPVGPYEALAPGEDVDEAALRDRLGLPLFVKPAR 188 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT-- 190 GGSSLG++ +++ + +P + + + + ++L+E + G E+ C V+ D ++ + Sbjct: 189 GGSSLGVVKVERWEDLPEAV--AVARKYDPKVLVETGIAGREVECAVLEFPDGRVEASVL 246 Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI VP D Y +E KY + + +PA + + E++ LA A + + C G++R DF Sbjct: 247 GEIVVP--DAYDFETKYLNNIARLQVPADVSEPLASEIRALAVRAFETMDCSGLARVDFF 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E+N PG T S++P+M G + +LL ++E A Sbjct: 305 IAEDGGPI-INELNTLPGFTTSSLYPKMWEQTGLDYSKLLDTLIETAFAR 353 >gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2] gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 341 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S E VS+ S A L+ ++ I + + L H Sbjct: 6 IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + DL F VLHG FGEDG +Q +LEL IPY I Sbjct: 66 PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYVKPARSGSSFGVTKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + + + ++LIE+ V G E+ C + G+ + +V +I + F Sbjct: 186 RQEELLSAVEI--ARQYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 HQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVDMFL-KEDGTVI 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S FP M A AG F E++ +V A Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340 >gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] Length = 347 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ SA+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] Length = 360 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E VSL + A AL F + I + + Sbjct: 5 LGLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRML 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 A K D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 65 QFEQSAKTFLPTSLNESMFPQPASADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGN 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA MDK+ K V + G+ + N+ + + ++ P +KP Sbjct: 125 GVLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191 GSS+GI + + + ++ + ++++E+ V G EL GV+G+ V Sbjct: 185 NMGSSVGISKCRSKEELQTAFDL--AFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA + D YK + +A A +++ G+ R+DF Sbjct: 243 EIAPKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLT 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + + G + EL+ +V A Sbjct: 303 EK-GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346 >gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC 13129] gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae] Length = 365 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS S A + L+ ++V + + + P Sbjct: 18 VAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVDRV 77 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q + EL +P Sbjct: 78 MPEVQFTREVSLSVNPTTAGELCFEDGSLYAKVDVVFPVLHGRFGEDGTIQGLFELSGVP 137 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ T + + + P +KP +G Sbjct: 138 YVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGLPVFVKPARG 197 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193 GSS+GI + D S + H ++++E + G+E+ CGV+ D SL + A Sbjct: 198 GSSIGISRVADWSEW--DAALSLAREHDSKVIVEAEIVGVEVECGVLERIDGSLMASVPA 255 Query: 194 ------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + +Q L+ A A+ CRG++R D Sbjct: 256 QLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD 315 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P++ G + +LL ++E A Sbjct: 316 FFVTDHG--PVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362 >gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] Length = 317 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 121/307 (39%), Positives = 172/307 (56%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S ERE+SL SG ACA AL + GF V ID D L D+AF LH Sbjct: 12 VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG VQ LE + +PYT SGILASAL+++K R+K+ G+ V PS+ V R Sbjct: 72 GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131 Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+KP GSSLG+ +++ + + + S + +IE ++ Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALS--VDVEAMIEGFI 189 Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G ELT GVMG+ +L V +I + +FY++ KY+ S H+ PA + ++ + VQ Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH +GCRGISR+D + D +R + LE N PGMT S+ P+ A AG F + Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAENR-CWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308 Query: 290 LWMVEDA 296 ++E A Sbjct: 309 ERLIELA 315 >gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] Length = 302 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 + ++ GG S+ER+VS+S GKA A+AL G +V D + + + D F LH Sbjct: 3 ILLIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTM 118 G GEDGL+QA+L+ L PY SG S L++DK +K + + G+ LV Sbjct: 63 GAPGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREE 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + Q + P IKP +GGSSLG+ + + + L Q + +L+E+ V G E+T Sbjct: 123 NWQPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQLSQQLQF--SSAVLLEEAVTGKEVT 180 Query: 179 CGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 C V+G+ +L + I ++ F+ Y KY+ + + PA + + +Q+ A AH+ Sbjct: 181 CAVVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRI 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +G G SR+DF+ + F LE N PGMTP S+ P+ AA G F LL +++ Sbjct: 241 LGLTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQ 295 >gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] Length = 356 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ + V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTVEEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 HLEDISPGEITLLLKENGEGSKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP+ GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ + E+ V+G+ + T + Sbjct: 186 GISKCNNEDELKKGIEEAFQFDR--KLVIEQGIIAREVEVAVLGNDYPETTWPGEVIKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY + +PA + ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 QFYDYKSKYKDGKISLQIPADLDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAFSMYPNLWENMGLSYSDLITKLIDLA 341 >gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 367 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 71/362 (19%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 2 AVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERRT 61 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ F VLHG +GEDG +Q + Sbjct: 62 PDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQGL 121 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------D 119 LEL +PY +G+LASA+ DK K V +S G+ V P ++ D Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIVD 181 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P +KP + GSS+GI + D LD + H ++L+E + G E+ C Sbjct: 182 FAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIEEARRHDPKILVEAALRGREIEC 239 Query: 180 GVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 GV+ G + EI P + +Y +E KY ++ ++PA + + EVQRLA A Sbjct: 240 GVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-IDSTPGIVPAPLTAEETAEVQRLAVAA 298 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V+ Sbjct: 299 FDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 357 Query: 295 DA 296 A Sbjct: 358 AA 359 >gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] Length = 347 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID ++ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENHEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63] gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] Length = 299 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ +D + D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P +L V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G E Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGL--EVDEFVMIEKYIPGGE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ I S F+ YE KYS + ++ K V ++ + Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 383 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T + ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L + Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 258 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361 >gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99] gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99] Length = 373 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 104/357 (29%), Positives = 168/357 (47%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 13 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 73 LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL--ISPPYV 129 L +PY +G+LASA MDK +K++ S+ G+P+ P ++ R ++D + L + P Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + +P + +++ H ++++E ++G EL CGV+ D L Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAI--AAARRHDPKVIVEAAINGRELECGVLEFPDGRL 250 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY +E KY + +PAK+ D+ V++LA A +AI Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF E+N PG T +S++P M +G + LL MVE A Sbjct: 311 CQGLARVDFFLT--DDGPVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVETA 365 >gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 356 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E +VS+ + + +A+ + V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTIEEL 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 HLEDISPGEITLLLKENGEGNKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ V E+ V+G+ + T + Sbjct: 186 GISKCNNEDELKKGIEEAFQFDR--KLVIEQGVIAREVEVAVLGNDYPETTWPGEVIKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY + +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 QFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341 >gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] Length = 308 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56 + +L GG SSE+EVS+ S + +L + + V +D+ + + DL F Sbjct: 3 ILILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDIATLSPYELCQKILCENFDLVFP 62 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 VLHG GEDG +Q L+ L I Y SG+ + A++MDK R K + S P I + Sbjct: 63 VLHGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQPDFIAIRTK 122 Query: 117 T----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ L P V+KP GSS+G+ ++ + + L + + +L+E+++ Sbjct: 123 DSTEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELKDAL--ELGFKYDPIVLVEEFI 180 Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+TCGV+G++ +L + EI +PK+ F+ YE KY+ ++PA++ ++ +Q Sbjct: 181 HGKEITCGVIGNSNVIALPLVEI-LPKTKFFDYESKYNPQLCDEIVPARLNDNLKDRLQE 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A++A C+ R D D ++ EIN PG+T S+F + AGYSF+E++ Sbjct: 240 LAIKAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAAGYSFQEIV 298 Query: 290 LWMVEDA 296 +V+ A Sbjct: 299 KLLVKLA 305 >gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 166/359 (46%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123 +LE L +PY GILASA+ MDK+ K+ + + VP P + + T + Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSS+GI + + + ++ H +L+EQ V G EL CGV+ Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDDLVAAV--EEAFRHDHVVLVEQGVTGRELECGVL 244 Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G + + + + ++ Y KY ++PA +P ++ + ++ L+ A AIG Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL+D + +F E+N PG T S++P++ A +G ++ E++ +V A Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAFTR 363 >gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 315 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 163/309 (52%), Gaps = 16/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV++GG SSE E+S +G A A+AL + G+ +++++ ++ L + + FN +H Sbjct: 9 VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPSNLINELRDMNAKVVFNAVH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q+ILE IPYT G+LASA+SMDK +K+ + S G+P P +++N+ Sbjct: 69 GMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDAG 128 Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P VIK GSS+G+++ K Q + L ++ + + +L E+ Sbjct: 129 DLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPAL--EEAFKYSENVLAEKC 186 Query: 172 VDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G ELT +M + L V IA P S Y + KY+ + + PA + Sbjct: 187 IKGKELTISIMEENGEPKPLPVIWIA-PHSGAYDFHSKYTKGATDYHCPAPFDEKTTAYI 245 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q++A ++ +G G++R D + + LE N PGMT S+ P+ AA G SF E Sbjct: 246 QKIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFPE 305 Query: 288 LLLWMVEDA 296 L ++ A Sbjct: 306 LCEKILLSA 314 >gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 364 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG+SSE EVS S ++ + ++V + + + + Sbjct: 9 VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL I Sbjct: 69 ELPGNMACVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 Y G+LAS++ MDK + + + GVP + NR+ ++ + + P Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + + +++ E +VDG E+ C V+G Sbjct: 189 VKPANAGSSVGISKVSSQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG T +S++P++ + G +L+ ++ A Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens] Length = 327 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 11/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ + ++V IDV + L+ D A LHG Sbjct: 17 VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+V+ + G+ + ++R Sbjct: 77 TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ P +KP GGSS+G+ + D+ L + ++ +++E V G Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIGVQRV--DRQEALRAALAEAFRWDASVVVESMVTG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TC ++ L V I ++++ YE KYS + P +P D+ V+ A Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAKYSDGGAEE-RPITLPSDVEARVREAALAC 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL ++E Sbjct: 254 YRVLQCRVYARVDMIL--QDGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311 Query: 295 DASCLR 300 + R Sbjct: 312 LSLVER 317 >gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A++ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP G S+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR +F + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC 13950] Length = 381 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 21 VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAALAITDRR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 81 LPEVTAESGTELALSADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129 L +PY +G+LASA MDK +K++ ++ G+PV ++ R + + P Sbjct: 141 LAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRARLRPEECQRLGLPVF 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187 +KP +GGSS+G+ + + D +++ H ++++E + G EL CGV+ D ++ Sbjct: 201 VKPARGGSSIGVSRVASWDQL--DAAVAAARRHDPKVIVEAAIVGRELECGVLEMPDGTV 258 Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + EI V + FY + KY + +PAK+ +I V++LA A +AI Sbjct: 259 EASALGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDEIADTVRQLAVRAFKAID 318 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 319 CQGLARVDFFLTEDG--PVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376 >gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 301 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V + V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] Length = 347 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + + P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 301 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ +L++ + +++IE+Y+ G E+ Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E + Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295 >gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] Length = 385 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +++ + ++V I + L +P Sbjct: 19 VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADEPSRMAIADRK 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 LPSVDDLADSEDGAVVLSVDPANREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL IPY SG+LASA+ DK K+V +S G+ V P + V Sbjct: 139 LLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYLTVRPREWTRDADAARGRIL 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P IKP + GSS+GI + D LD + H ++++E + G E+ Sbjct: 199 DFAEEHGWPLFIKPARAGSSIGITKV--DDVSGLDEAVREAQRHDPKIIVEARLRGREIE 256 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY +++ ++PA + + EV+RLA Sbjct: 257 CGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKY-IDSASGIVPAPLTPEQTAEVRRLAVE 315 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P M +G ++EL+ ++ Sbjct: 316 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVEYQELVDLLI 374 Query: 294 EDA 296 + A Sbjct: 375 QAA 377 >gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] Length = 322 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 159/303 (52%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 +A++ GG S EREVSL+ L+ + VS+ D + + A D AF +LH Sbjct: 11 IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G GEDG +Q L+LL IPY SG+L SAL+MDK +K+ + +PV + Sbjct: 71 GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P V+KP GSS+GI + ++ + + + + +++EQ++ G Sbjct: 131 YSEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCS-AGAIMVEQFIKGR 189 Query: 176 ELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELTC V+G+ +L V EI K F+ YE KY S + PA I + ++VQ A Sbjct: 190 ELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQDHA 249 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQA+ RG SR+DF++ K++ LE N PGMT SI P+ AA G F LL Sbjct: 250 IRAHQALRLRGYSRTDFIY-GEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDT 308 Query: 292 MVE 294 ++E Sbjct: 309 LIE 311 >gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] Length = 302 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A ++L + +D LA F LHG Sbjct: 9 VAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAE--CSRVFICLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q+ L+ ++IPYT SG AS L MDK+ SK + + + + Sbjct: 67 KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEGMTYD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + IK GSS+GI + K Q S++ + ++ E + G E T Sbjct: 127 EVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAF--ESAYKVDNTVIAEMMIFGEEFT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + L + EI PK+DFY YE KY ++ + PAK+ + ++ +L A A+ Sbjct: 185 LPILDSSPLSIVEIR-PKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNAL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G R DF+ + +VF +E+N PGMT S+ P A +G SF L+L +++ A Sbjct: 244 GCSGWGRVDFMINNQ-NEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTAYA 302 >gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 355 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 158/351 (45%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S+E VS S A L+ F+V I + R + Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + EL IPY Sbjct: 67 EVKHGTELALSADPTRKGEIRTISDGSLYAHVDVIFPILHGPYGEDGTMQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+++S+ G+PV P ++V T + + + P KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194 SS+G+ + P + + D++L+E + G E+ GV+ D L + A+ Sbjct: 187 SSIGVSKVSDWADFPEAVRIAL--EDDDKILVEPEIVGREVEVGVLQYPDGRLIASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY +E KY T +PA P ++ +++ +A A +A+ C G+SR DF Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASAEAR 353 >gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] Length = 288 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 162/296 (54%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL SG A +L+ G+ +DV +++ + DLA+ H Sbjct: 3 IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GE+G Q +L++L PYT SG + SA++MDK +K V +S G+ + Sbjct: 63 GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTY------NC 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P V+KP + GSS+GI + + L G + LIE+ + G ELT Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVREALRALE----GRKPLIEEMIQGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ L V I +PK+ FY YE KY++ S H PAKI Y + A H IG Sbjct: 173 GVLNGEGLGVLRI-IPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ +V++LE+N PGMT S+ P++ GY+F +L+ MV+ Sbjct: 232 LKGISRSDFML--KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285 >gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S+E EVS +G A A AL G+ VS ++++ R+V + +LK D+ FN +H Sbjct: 6 IIVLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114 G +GEDG +Q LE+ EIPYT SGI+A ++ M+K SK V +P SI N Sbjct: 66 GRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQS 125 Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D + S P V+KP GSS+G+ ++K++ + + + + + L++EQY+ Sbjct: 126 KEDIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAV--TEALTYDPILVVEQYL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +G E T V+ +L + EI P S Y Y KY++ + +++PA I D+ KE+Q + Sbjct: 184 NGREFTVSVLDGKALAIIEIR-PHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G R D + D ++ LE N PGMT S+ P+ A G F EL + Sbjct: 243 LVYREVQASGAIRVDVMTDDKDN-MYVLEYNTIPGMTATSLVPKAAKEVGIDFPELCEKI 301 Query: 293 VEDA 296 + A Sbjct: 302 LLTA 305 >gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] Length = 306 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 157/298 (52%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSEREVSLSSG A AL +G +D D L AF VLH Sbjct: 8 VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG VQAIL+ IPYT SG+LA AL+MDK+ +K+V + G+PV P ++++ T Sbjct: 68 GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127 Query: 120 SQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ L + IKP GSS+G+ + + ++ ++++ E +V G E Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAG--GIREKIMAEPWVTGRE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT V+G L E+ FY Y+ KY + ++ + P I + +++ L A Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AIG +G +R DF+ D + + LEIN+ PGMT S+ P A G F L+ ++ Sbjct: 246 DAIGAKGWARVDFILDG-DNRPWILEINMVPGMTSHSLVPLAAREDGMDFVALVRQIL 302 >gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] Length = 365 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 157/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + VL GG+SSE EVS S L+ A ++V + + R Sbjct: 10 VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + L D+ LHG +GEDG VQ +LEL IP Sbjct: 70 ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ ++S + P Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + +H +++ E +VDG E+ C V+G Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALALENDH--KVVFEAFVDGHEVECAVIGSDPAVA 247 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA++ + EV+ A +A+ A+ C G++R D Sbjct: 248 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCD 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++E A Sbjct: 308 FFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356 >gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 360 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 162/354 (45%), Gaps = 62/354 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 AV+ GG S E +S S + +AL+ ++V + + R+ VL Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 47 --------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILEL 74 A D+ F VLHG +GEDG +Q +LE+ Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIK 131 IPY + + ASA +MDK +K++ ++ G+PV P ++ T + + P +K Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQRLGLPVFVK 181 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS GI + + D +++ ++L+E V G E+ CGV+ + V E Sbjct: 182 PSRAGSSFGITRVTDWADL--DDAVANARKIDPKVLVESAVIGREIECGVLEAEAGGVPE 239 Query: 192 -------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V DFY +E KY ++ + +PA +P + ++VQ A A A+ C G Sbjct: 240 ASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCAG 299 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R+DF P V+ E+N PG TP S+FP M A +G +++L+ ++ A Sbjct: 300 LARADFFVTP-ELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352 >gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] Length = 307 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 109/296 (36%), Positives = 152/296 (51%), Gaps = 12/296 (4%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S+EREVSL SG A AL AG ID+ ++ +A D AF LHG Sbjct: 15 GVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGT 74 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG VQ +LE++ IPYT S ++ASAL M+K KQV+ G+ I + + Sbjct: 75 LGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRI-----EVT 129 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP+ GSS+G+ I Q +QS + + E V+G+E+ V Sbjct: 130 GPERYPVFVKPVAEGSSVGLHRISSQQEWQALNIQSPA-----AWMAEMPVNGVEIAVSV 184 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L E+A PKS Y Y KY+ + + PA++P++ + A A A GC Sbjct: 185 LAGVALMPVEVA-PKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G R D + + LEIN PGMT S+ P+ AA AG F+ L L ++E AS Sbjct: 244 GAPRVDMIV-GSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298 >gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] Length = 372 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 159/355 (44%), Gaps = 65/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + +L GG SSE +S ++ SA++ + V + + R L Sbjct: 15 VVLLFGGRSSEHSISCATAGGVLSAIDRDKYTVIPVGITRDGAFTLQPDDAEAFRLNPEA 74 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG VQ ++EL Sbjct: 75 MPEIVDNGTRVRWPETSNSRELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIEL 134 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 +PY +G+LAS++ M+K +K + + GV V P + ++ + Sbjct: 135 TGLPYVGNGVLASSMGMNKHFTKLALEAAGVAVAPWVTISAVQWSRHPDVWRQRASSLGL 194 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182 P +KP + GSS+G+ + + D ++++ L+EQ + G E+ CGV+ Sbjct: 195 PVFVKPARAGSSVGVTKVTHADEL--DAALATAFAEDSTALVEQAMTGREIECGVLSGRD 252 Query: 183 -GDASLDV-TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GD + V EI V DFY +E KY + + PA++ ++QR A A +AIG Sbjct: 253 GGDTRVSVAGEIVVTGRDFYDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIG 312 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G++R DF FD + EIN PG TP+S+FP+ A +G S+ EL+ ++E Sbjct: 313 GAGLARVDFFFD--GAEFVVNEINTLPGFTPISMFPKCWAASGMSYPELIDELIE 365 >gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1] Length = 390 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 156/363 (42%), Gaps = 71/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE +S+ + A A++ + V I + L +PD Sbjct: 24 VAVVFGGRSSEHTISVVTAGAVLRAIDREKYDVLPIGITGDGRWALTADEPDRMAIAGRV 83 Query: 53 ------------------------------------------LAFNVLHGNFGEDGLVQA 70 + F +LHG +GEDG +Q Sbjct: 84 LPSVEGLAESEDGSVLLPVEQGNREVVYAEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ + Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWEKDPAAARKKIV 203 Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + + H ++++E + G E+ Sbjct: 204 EFAGEHGWPVFVKPARAGSSIGISKVDDISGLEEAI--EEARRHDPKIVVEALLRGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V DFY +E KY ++ V+PA + + + V+ LA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKY-IDSADGVVPAPLTEEQTERVRELAVR 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF + EIN PG TP+S++P M +G S+ EL+ ++ Sbjct: 321 AFEAASCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 379 Query: 294 EDA 296 + A Sbjct: 380 QAA 382 >gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 363 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 46/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S+E EVS+ S + A+ ++V + + + V L KP+ Sbjct: 11 IILLYGGKSAEHEVSVLSAFSVLQAIYYEYYQVQLVFISKKGEWVKGPLLTEKPESKDIL 70 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +LHG GEDG +Q LE + +PY +G++ SA Sbjct: 71 QLTWKGEQASAKEIHPSEIKQEEAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSA 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 MDK+ +K ++ + G+P P + V + + + P +KP GSS+ Sbjct: 131 CGMDKIMTKYILQAAGIPQVPYVPVLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKS 197 GI + + + L ++ + + +IEQ ++ E+ ++G+ + T V Sbjct: 191 GISKAENREELQHAL--EEAYQYDTRAVIEQGIEAREIEVAILGNEDVRTTMAGEIVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y KY +PA +P ++ + Q A A+ +G G+SR DF ++ Sbjct: 249 AFYDYNSKYIDNKIEMQIPASVPDEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTSK-NEL 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F E+N PG T S++P + G + +L+ +++ Sbjct: 308 FLNELNTMPGFTQFSMYPSLWEQTGLKYGDLIEELIQ 344 >gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 404 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ F V + + +L P Sbjct: 37 VAVVFGGRSGEHTISCATAAGVLSAIDRDRFDVLPVGITLDGQWLLVDDDPAALALDESR 96 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 97 PPVEITAEGLGRGELAMRLGGGAFTAVTPTGPKVLGEVDVVLPLLHGPYGEDGTIQGMLE 156 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLIS 125 +L+IPY G+LASA MDK +K ++++ G+P ++V+ DS+ ++ Sbjct: 157 MLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHVVVHPHRWDSERELILDACEALT 216 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI +++ + +P + ++ ++L+E V+G E+ V+ Sbjct: 217 YPLFVKPARAGSSLGITKVERREDLPAAI--EAAREVDPKVLVESGVEGREVEVAVLDGH 274 Query: 186 SLDVTEIAVPK----------SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +A P +FY YE KY + V PA++ + ++ A A Sbjct: 275 HGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQMVCPARVSHQESELLKETAARA 334 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G G+ R DF P V E+N PG TP S++P M +G S+ +L+ ++E Sbjct: 335 FEALGGEGLMRVDFFLTPRGEAV-VNEVNTMPGFTPFSMYPYMWQVSGLSYTDLVSELIE 393 Query: 295 DA 296 A Sbjct: 394 LA 395 >gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] Length = 354 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 56/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG+SSE VSL S + + + F V I + R L Sbjct: 6 VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65 Query: 47 ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ D+ F VLHG GEDG VQ +L L IP Sbjct: 66 SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 + G+ ASA+ MDK +K + + +P V + + + P Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI +++ + ++ H +L+ E+ V+G E+ C V+G+ V Sbjct: 186 VKPANAGSSVGISKAADRETLYKAIETAA--THDRKLVFEEAVNGREIECAVLGNEEPVV 243 Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + P ++FY Y KY + + V+PA +P D+ + V++ A + +GCRG++R D Sbjct: 244 SCCGEIKPCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F V E N PG T +S++P++ G S+ ELL ++ A Sbjct: 304 FFALE-DGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELLETLLRLA 351 >gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977] gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus] Length = 381 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 160/364 (43%), Gaps = 69/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE +S S + L+ A ++V + V G VL P Sbjct: 17 VALVFGGRSSEHAISCVSAGSILRNLDQAVYEVVAVGVTPEGGWVLTDGDPAQLAISDRT 76 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 77 LPQVTDASGTELLLATDPRRAGQLVNVDSSAAGQVLASVDVVFPVLHGPYGEDGTIQGLL 136 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128 EL +PY +G+LASA MDK +K+++++ G+P+ ++ T+D + + P Sbjct: 137 ELAGVPYVGAGVLASAAGMDKEFTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPV 196 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----G 183 +KP + GSS G+ + + +P + + + + ++++E + G EL CGV+ Sbjct: 197 FVKPARAGSSFGVSRVTAWEELPAAI--AHARQYDPKVIVEAAIVGRELECGVLEFPDGD 254 Query: 184 DASLDVTEIAV--------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + EI V FY +E KY + +PAK+ D+ +++ LA A Sbjct: 255 TRASVLGEIRVEGVNRDQTAAGAFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAF 314 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI C+G++R DF EIN PG T +S++P M G + LL MV Sbjct: 315 RAIDCQGLARVDFFLAEDG--PLINEINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRT 372 Query: 296 ASCL 299 A Sbjct: 373 ALAR 376 >gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] Length = 284 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 167/295 (56%), Gaps = 14/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AV MGG+SSERE+SL +GKA +L G+ +D+ + + DLA+ LH Sbjct: 3 IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QA+L++++ PYT SG+ SA++MDK +K + G+ + S D Sbjct: 63 GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKIIAEKAGIRIPKSY------RD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 +IS P V+KP GSS+G+ + + + G LLIE++V G ELT Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNSIEEVEKAEKN----LMGKSLLIEEFVSGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ L V +I+ PKS Y ++ KY+ + + PAK+ +Y+E + HQ +G Sbjct: 173 GVLNGEPLGVLKIS-PKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQELG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+SRSDF+ K+++LE+N PGMT S+ P++A GY+F +L+ +++ Sbjct: 232 LSGVSRSDFIL--KDDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284 >gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] Length = 347 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPGLIERLVDLA 335 >gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100] Length = 379 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 152/353 (43%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GG SSE VS S A L+ ++V + + V Sbjct: 26 VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWVPGTVDTSELRADDRE 85 Query: 46 -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F VLHG GEDG +Q + EL Sbjct: 86 MPSVRDRGEHIQLVLGAQTGELRYVSGGHAGRTYAHVDVIFPVLHGQNGEDGTIQGLFEL 145 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIK 131 IPY +G+LASA MDK +K++ GVP +++ T D Q + P +K Sbjct: 146 AGIPYVGNGVLASAAGMDKEYTKRLAKQAGVPCGEELILAENRELTEDEQQRLGLPVFVK 205 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + +++H +++++E + G E+ CGV+ V Sbjct: 206 PARGGSSIGISKVDTWEDFAHAVEI--AFDHDNKVIVEAMIHGREVECGVLQYPEGSVIA 263 Query: 192 IAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A FY ++ KY T +PA I + EV+RLA +A+ C G+ Sbjct: 264 SAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGL 323 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF +V EIN PG TP+S++P+M G + +LL ++ A Sbjct: 324 ARVDFFVTDS-GEVILNEINTLPGFTPISMYPQMFIAGGMGYPQLLDILIARA 375 >gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] Length = 353 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AV++GG SSE EVSL SG++ ++ + V I + + +LA Sbjct: 5 LAVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKE 64 Query: 48 --------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L D F VLHG +GEDG +Q + EL IPY Sbjct: 65 SKVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPL 133 G++ASA+ MDK +KQVV + G+ + V R + + PY +KP Sbjct: 125 CGVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPS 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS G+ + + LL ++ H ++L+E+ + G EL C V+G + + + Sbjct: 185 NAGSSKGVSKAADREGLKKALLLAA--EHDRKILVEETIVGRELECAVLGGFDVKASGVG 242 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY++ S VL ++P +E++ A +A+ G+SR DF + Sbjct: 243 EILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLE 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ + EIN PG T +S++P + G + L+ ++ A Sbjct: 303 NDTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALIDELINLA 347 >gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 788 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 32/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+E EVSL+S + +L+ ++ + + + VL + Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K DL F +LHG FGEDG +Q LE+L PY +SA+ MDK +K+++ Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574 Query: 104 GVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G+ I + + + + P +KP+ GSS+G+ + + + + Sbjct: 575 GIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELDAAI 634 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNST 212 + ++ +L+E + G E+ V+G+ + V + Y KYS N+T Sbjct: 635 RNAFAF--DPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNAT 692 Query: 213 HVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 P A +P +E + +A A+QA C+G++R DF D S ++ EIN PG TP Sbjct: 693 PSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD-QSGSFWFNEINPIPGFTPF 751 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S++P+M G+S EL+ ++ Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773 >gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 348 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRAAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 311 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 159/307 (51%), Gaps = 12/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ ++V I++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+++ + G+ + R Sbjct: 63 AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLERAMFAD 122 Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ P +KP GGSS+G+ + + + + L ++ W G+ +L+E V G Sbjct: 123 GTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVSG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 E+TC ++ L V I +++ YE KYS + P +P D V+ A Sbjct: 181 QEITCPILDGELLPVLGIRAANGAEWFDYEAKYSDGGAEE-KPITLPPDEETRVRAAALA 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL ++ Sbjct: 240 CYRLLQCRVYARVDMIL--KDGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRII 297 Query: 294 EDASCLR 300 E + R Sbjct: 298 ELSLAER 304 >gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 300 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 156/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ +V D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAVELAL--KYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIVKA--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 361 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 + ++ GG SSE EVS+ SG +A++ + V I + + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 44 -------------LVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LA+L + D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV + + RF + + + +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI +K + L + ++ + D++L+E+ +DG E+ V+G+ + V+ +I Sbjct: 187 VGISHVKSEADYLPAL--AEAFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY ++T + PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG + +L+ ++E A Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346 >gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] Length = 304 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ST ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] Length = 361 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 + ++ GG SSE EVS+ SG +A++ + V I + + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 44 -------------LVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LA+L + D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV + + RF + + + +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI +K + L + ++ + D++L+E+ + G E+ V+G+ + V+ +I Sbjct: 187 VGITHVKSESDYLPAL--AEAFKYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY ++T + PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG + +L+ ++E A Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346 >gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 341 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 101/339 (29%), Positives = 162/339 (47%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER+VS+ SG AL G +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62 Query: 39 ---DRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 RS + +K D F LHG GEDG +QA +LL I Sbjct: 63 AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKG 135 YT SG L SAL+MDK +KQ+ GVP ++V + ++ + P V+K G Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRKTDSPKSAAELGMELPCVVKTACG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ ++ + +++ D+L++EQY+ G E T GV+ + + EI+ P Sbjct: 183 GSSVGVYIVHTEEEFSEAVKN--GFSYEDKLIVEQYIRGQEYTVGVIDGKAYPIVEIS-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + FY Y+ KY + ++ PA + ++ +++Q +A A+ + +R DF+ D Sbjct: 240 IAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE-DG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G +F +L ++E Sbjct: 299 GIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337 >gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis] Length = 349 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG S+E EVSL S A + F + I + R+ Sbjct: 6 IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +K DL F VLHG GEDG +Q + EL IP Sbjct: 66 EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 L+SAL MDK ++ ++VS G+ V S+ + + +S P +KP+ Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISVPKSVTFKFSGKKAALKKIEKELSYPLFVKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + K Q + + ++ H ++++E+ ++G E+ C V+G L V + Sbjct: 186 RAGSSFGITKVTKQQELENAIQL--AFEHDAEVIVEETINGFEVGCAVLGIDELIVGRVD 243 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMFYT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQMLDKLI 344 >gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] Length = 319 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 161/319 (50%), Gaps = 31/319 (9%) Query: 3 VLMGGISSEREVSLSSGKACASA---------LEDAGFKVSQI------------DVDRS 41 ++ GG+S E EVSL S + + G + + + Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHMPFPTDLAVIARDGRWLLGEKALAALEAKAAPEGEHP 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V++ Sbjct: 65 FPPPLPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLA 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 GVPV P + V + S PP+ +KP GSS+GI +++ Q + L ++ Sbjct: 125 QAGVPVVPWVAVRKGE-PSMVPFDPPFFVKPANTGSSVGISRVERFQDLEAALAL--AFR 181 Query: 162 HGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++ ++E+ + EL GV+G+ + V E+ ++ FY YE KY+ + ++PA Sbjct: 182 YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIPA 240 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + VQ LA A++ +G RG++R DF +V+ E+N PG TP S++P + Sbjct: 241 PLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGEVYLNELNTIPGFTPTSMYPRL 298 Query: 278 AAYAGYSFRELLLWMVEDA 296 G ++ ELL +VE A Sbjct: 299 FEAGGVAYPELLRRLVELA 317 >gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] Length = 367 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E ++SL S ++ ++V + + + + Sbjct: 8 IVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSNQL 67 Query: 46 --------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 P+ + F VLHG GEDG +Q LE+L +PY Sbjct: 68 ALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGMPY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVI 130 +G+ ASA MDK+ SKQ+ G+P P + + + + P + Sbjct: 128 VGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLFV 187 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ ++++EQ + E V+G+ + Sbjct: 188 KPANMGSSVGISKATTTEELRAAVEKALQFDR--RIVVEQGISAQECEVAVLGNDDAHAS 245 Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + V +DFY Y+ KY + +PA++P I ++Q A A++A+ +G+SR DF Sbjct: 246 VVGRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDF 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG TP S++P + G + R+L+ +++ A Sbjct: 306 FVTAS-HDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352 >gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] Length = 369 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T + ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L + Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 258 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361 >gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551] gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11] gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A] gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210] gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207] gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506] gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN V2475] gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11] gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CDC1551A] gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148] gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 4207] Length = 373 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 368 >gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] Length = 347 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + +L GG S+EREVS+ S ++ A+ F V + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 39 --------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017] gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 365 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + + L+ F+V I + + G VL P Sbjct: 8 VAVVFGGRSTEHTISCVSAGSIMANLDPDRFEVVPIGITQEGGWVLGTNDPEQLRIKGRE 67 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F LHG FGEDG +Q +LEL Sbjct: 68 LPVVEHGKTLVLAGDPTTGGVLSLTAGEPAEVLSGVDVVFPALHGAFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131 +IPY SG+ ASA +MDK +K+++++ G+ V +V R + + + P +K Sbjct: 128 DIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQDTLPAEERERLGLPVFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DAS 186 P + GSS+GI + + D + + ++L+E G E+ CGV+ + Sbjct: 188 PARAGSSIGISRVTDWSQL--DAAIAHARQTDPKVLVEAETVGREVECGVLEFADGRVEA 245 Query: 187 LDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +EI V D +Y +E KY ++ +PAK+ I + ++ +A A A+ C+G+ Sbjct: 246 SFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKLDDTITERLRDMAVRAFTALECQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF P + E+N PG TP S +P+M G + LL +VE A Sbjct: 306 ARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWEVTGIDYPTLLTTLVETALAR 360 >gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 375 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K +++ F+V +D+ + + Sbjct: 6 VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 ++ D+ F ++HG GEDG +Q +L + + Sbjct: 66 YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ + V PSI + R ++ + +K Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + S L + + D++L+E ++G EL C V+G+ + Sbjct: 186 PANQGSSVGVSKVINRISFDQALALAFCF--DDKVLVESAINGRELECAVLGNHDPQASL 243 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V +FYSYE KY + + V+PA I ++ +Q++A A QA+ C G++R D Sbjct: 244 CGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV E+N PG T +S++P++ +G S+ L+ ++E A Sbjct: 304 FLTT-NNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350 >gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 353 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 159/347 (45%), Gaps = 50/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG SSE EVS S + ++ + + + + + +L Sbjct: 6 IVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITSGVWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + K D+ F VLHG FGEDG VQ +LEL +PY Sbjct: 66 GKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LAS++SMDK+ +K +V S G+ V ++ ++ IS P IKP Sbjct: 126 GVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS GI + + L +++ H ++L+E+ + G E+ C V+G + + Sbjct: 186 AGSSKGITKAHNRDDLIVGLKEAA--EHDRKILVEETIVGREIECAVLGGMEAKASGVGE 243 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY Y+ KY++ +S ++ ++P +E+ A +A+ +SR DF + Sbjct: 244 ILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + ++ + EIN PG T +S++P + G + +L+ +++ A Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350 >gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 363 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 55/353 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG+SSE EVS S + ++ ++V + + + + Sbjct: 8 VVLLFGGMSSEHEVSRVSVGNFVNNIDREKYEVLTVGITKEGRWLYTEATAAQMADGSWE 67 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL IP Sbjct: 68 DLAGNMACVISPDRADHGMILFTPEGHVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 Y G+LASA+ MDK + + + GVP + +R+ ++S + + P Sbjct: 128 YVGCGVLASAVCMDKAVANALFEANGVPHTRWLAADRWEIESDLEGVCDGVEKKLGWPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + +++ E +VDG E+ C V+G Sbjct: 188 VKPANAGSSVGISKVSSRDELKKAIDLAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 245 Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 246 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAIAYTALNCEGLARCD 305 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 F + + +V EIN PG T +S++P++ + G +L+ ++ A + Sbjct: 306 FFVEKGTGRVLINEINTFPGFTSISMYPKLMEHEGLPVPQLIDRLIALALERK 358 >gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 350 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG SSE EVS S +L++ + V + + + +L Sbjct: 5 IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG +Q + E+ +IPY Sbjct: 65 SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + + R + ++ +S P +KP + Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+G+ + +++ L +++ H +L+E+ + G E+ C V+G + + + Sbjct: 185 AGSSVGVSKAEDREALSKALSKAA--EHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY Y+ KY++ S ++ +P + +E+++ A +A+ G+SR DF Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDFFI-A 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + A G L ++ A Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQGIKTPALADELIRLA 345 >gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] Length = 306 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 6/301 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSEREVSLS AL+ G +V D+ +A + D AF LHG Sbjct: 5 LVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLNLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120 GEDGL QA+L+ +PY +G S L+++K SKQ+ S G+P L Sbjct: 65 PGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPPPAGY 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179 PP+ +KP GGSS+ + +++ +P L + GD LIE+ + G +ELTC Sbjct: 125 APAFPPPWFVKPNSGGSSVYMSLVRDPAELPAAL--EKIFATGDAALIEEGLCGGMELTC 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L I +F+ Y KY + + PA IP + E+ RL+ AH A+G Sbjct: 183 AVLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAHAALG 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G SR+DF+ + LE+N PGMTP S+ P A AG F +L+ ++E Sbjct: 243 LTGYSRADFIHTDKHG-LMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLMELGLAR 301 Query: 300 R 300 R Sbjct: 302 R 302 >gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 94_M4241A] gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92] gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054] gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85] gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503] gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17] gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46] gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] Length = 358 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 353 >gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] Length = 304 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ST ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1] gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 304 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 373 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 161/359 (44%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S + + +A++ A + V I + VL P Sbjct: 10 VAVVFGGKSSEHAISCVTAGSVLAAIDRAAYDVVPIGIATDGRWVLESGDPERLRIEGPD 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG +GEDG +Q +LE Sbjct: 70 RLPHVDGERAAIALAPDTASTSLVVTEPAQPPRALGEVDVVFPLLHGPWGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125 + + Y +G+LASA+SMDK K V+++ G+PV PS+ V I Sbjct: 130 MAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSVTVTTREWARDAAGCRARADEIG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVM-- 182 P +KP +GGSSLGI + + D ++ H ++L+E +D E+ CGV+ Sbjct: 190 YPLFVKPARGGSSLGISKVHDATEL--DGAIELAFEHDPKVLVETAAIDAREVECGVLQA 247 Query: 183 ----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237 + S+ +FY + KY T + PA +P + ++V+ L+ A +A Sbjct: 248 VDGTPETSVPAEIRISGAHEFYDFAAKYLPEEHTELDVPADLPEALVRQVRELSVRAFEA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G++R DF P ++ EIN PG TP S+FP M A +G + L+ +++ A Sbjct: 308 VGCEGLARVDFFVLP-GERLVVNEINTMPGFTPTSMFPRMWAASGLDYPALVDRLIQLA 365 >gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 379 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 67/360 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 315 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 374 >gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 378 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 156/365 (42%), Gaps = 70/365 (19%) Query: 3 VLMGGISSEREVSLSSGKACAS-------------------------------------- 24 ++ GG SSE EVS ++ Sbjct: 11 IVFGGRSSEHEVSCATAAGILRAIDRDKWDVVPLGITKDGQWVPASDDPALLEFKDGKGQ 70 Query: 25 ---------ALEDAG-------FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 AL G + D V + D+ +LHG +GEDG + Sbjct: 71 SVEAGATRVALTPGGGSLVELSYDGDPADPGARVVGARDLGRVDIVLPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------- 120 Q +LE+ E+ Y G+ +SA+SMDK +K V++ G+ V L+ ++ Sbjct: 131 QGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWELITPLQWEADQGACLER 190 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI ++ + + + + NH ++++E V G E+ CG Sbjct: 191 AAALGFPVFVKPCRAGSSVGISKVESREGL--AVAVKEAQNHDPRVIVEAGVVGREVECG 248 Query: 181 VMGDAS------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G S + EI VP +FY YE KY V PA++ + V+ A A Sbjct: 249 VLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPAEVAPAYEERVRETALRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D S V E+N PG TP+S+FP+M A AG + L+ ++E Sbjct: 309 FDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQMWAAAGVDYPSLIDALLE 368 Query: 295 DASCL 299 +A+ Sbjct: 369 EAAAR 373 >gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 304 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 372 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + + H +++IE + G E+ C V+ Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235 ++ E+ FY +E KY S +S V PA +P D+ + ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 361 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 159/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + VL GG+S E ++S+ S +AL +A + V +++ + A Sbjct: 3 IIVLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLL 62 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + F VLHG GEDG +Q LE+L +PY Sbjct: 63 QLKQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130 +G+ ASA MDK+ SKQ+ G+P P + + R+ + + P+ + Sbjct: 123 VGAGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFV 182 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ ++ Q + + + ++ ++++EQ + E V+G+ + + Sbjct: 183 KPANMGSSVGVSRVENSQELIKAVDVALEFDR--RIVVEQGISANECEVAVLGNDDIHAS 240 Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + V SDFY Y+ KY + +PA +P + +++ A A++A+ G++R+DF Sbjct: 241 VVGRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADF 300 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T S++P + G ++R+L+ +++ A Sbjct: 301 FVTA-NYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLIDELIQLA 347 >gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 376 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 162/358 (45%), Gaps = 65/358 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS ++ + +A++ ++V I + R V++ P Sbjct: 14 VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LE+ Sbjct: 74 IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 ++ Y G+ +SA+ MDK K + + G+ V P ++ + + Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184 P +KP + GSS+GI + + + ++ H ++++EQ +DG EL C V+ Sbjct: 194 PVFVKPARAGSSMGITRVDDLADLEQAV--EAAREHDLKVVVEQGIDGRELECAVLDGHG 251 Query: 185 ----ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAI 238 + V EI V FY +E KY +ST + PA+ P + +E++RLA A A Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF P R + EIN PG TP S++P + A +G S+ EL+ ++ A Sbjct: 312 DCEGLARVDFFVTPDER-ILINEINTMPGFTPYSMYPALWAASGISYPELIDELLTLA 368 >gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 364 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 67/360 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 300 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 359 >gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 155/303 (51%), Gaps = 6/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + ++ GG S EREVSLS K +ALE+ G +V+ D + ++ + D AF LH Sbjct: 3 VILIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G GEDGL+QA+L+ PY +G AS L++DK SK+V + G+ P + Sbjct: 63 GTPGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGA 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ + P +KP KGGSSLG+ +++ P L + + L+E ++ G+ELT Sbjct: 123 DTPLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSALSKVFA--MCQSALVEIFIPGVELT 180 Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 C V+GD L + I F+ YE KY++ + V PA + + + VQ AH A Sbjct: 181 CAVLGDRPLPLIMITPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G G SR DF+ + LEIN PGMTP S+ P A G SF L+ ++ Sbjct: 241 LGLTGYSRGDFIL-AADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALISELIRLGL 299 Query: 298 CLR 300 R Sbjct: 300 EER 302 >gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99] Length = 356 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 159/342 (46%), Gaps = 46/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF------------------------KVSQI 36 + ++ GG S+E +VS+ + + +A++ A + V + Sbjct: 6 LCIIYGGKSAEHDVSILTAQNVLNAIDKARYHIDIIYITNDGQWKKMDNITEDITDVEAL 65 Query: 37 DVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +D ++ + + D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RIDDVPTSDISAMLTQSSQGGRYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ + G+P P + R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + ++ + ++ ++ +L+IEQ VD E+ V+G+ + T V Sbjct: 186 GISKCEDEAALIKGIEEAFQFDR--KLVIEQGVDAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVKLAIPADLDQDVQMTLRNMAVEAFKATDCSGLLRADFFVTA-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E N PG T S++P++ G S+ EL+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPKLWENMGVSYSELITKLIDLAKAR 344 >gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 372 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 152/361 (42%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ ++V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYEVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGTGDSRLTLVDAEGIVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNREWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + + H +++IE + G E+ C V+ Sbjct: 187 GFPLFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235 ++ E+ FY +E KY S +S V PA +P D+ + ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] Length = 304 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 348 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRTAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2] gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 303 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL +G+ + L+ ++V I+++ L+ D A LHG Sbjct: 4 IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LE L IPY+ G+L+S++SMDK +K+++ G+ I V + Sbjct: 64 KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123 Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+ ++K + + ++ W D ++IEQ+V G E+ Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKW--DDSVMIEQFVGGEEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ L + I S+F+ ++ KY +T + ++P D+ V+ A ++A Sbjct: 182 TCAVLSGKLLPIVSIK-ANSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C SR D + + LE N PG+T S+ P+ A AG F ELL ++++ + Sbjct: 240 LKCSVYSRIDMII--KDGVPYVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIIDYSL 297 Query: 298 CLR 300 R Sbjct: 298 EER 300 >gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 311 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I +D + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY +++ + ++P ++ + V + + ++A Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYRA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KIR 306 >gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] Length = 305 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+ L + V I ++ + + D F LHG Sbjct: 6 IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +QAILE ++IPYT G+LAS+L MDK +K ++ S GV I V Sbjct: 66 KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + KP GGSS+G+ IK +Q L + +++IE+ + G+E Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKD--IFTIDKEVMIEEVLRGVE 183 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ ++ I F+ Y KY + + + ++ E+ L A+ Sbjct: 184 ISVPIIDGKVYPTLCIEPKAGTFFDYASKYEVGGADEYV-VEFEKELQDEINELTKTAYH 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G +R DF+ K + +EIN PGMT S+ P+ + G S+ ELL ++E Sbjct: 243 AVKCEGYARIDFML--KDNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298 >gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 353 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47 +AV+ GG S+E VS S A + L+ F+V I + R V+ Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 48 HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 + P D+ F +LHG FGEDG +Q + EL +PY Sbjct: 67 EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P +++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194 SS+G+ + + P + + +++L+E + G E+ GV+ D +L + A+ Sbjct: 187 SSIGVSKVNSWEEFPAAVDLAL--EDDEKILVEPEIVGQEVEIGVLHYADGTLLASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR DF Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 305 FVTEES--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353 >gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 347 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+ER+VS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSGDFIKTQEFDQTPSQDERL 64 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLVSKIAEVEEKLNYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L ++ + ++L+EQ V+ E+ G++G+ + + V FY Y Sbjct: 185 ENQAELRQALDL--AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAK+ D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 EAKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G + EL+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGIPYPELIERLVELA 335 >gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] Length = 394 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 157/362 (43%), Gaps = 65/362 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS ++ A++ + + I V R VL P Sbjct: 32 VAIIFGGRSSEHAVSCATAAGVMRAIDRDKYDIVPIGVSRDGQWVLVADDPARFELTAGR 91 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ +LHG FGEDG +Q LEL Sbjct: 92 TPEVLPDRAHVVLPLSTRDTALTVLEAGQPPRELGDVDVVLPLLHGPFGEDGTLQGFLEL 151 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISP 126 +I Y SG+ ASA MDK K V + G+PV P ++ +DS + Sbjct: 152 SDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVITDRAWRADRAAALDSCAALDF 211 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182 P +KP + GSS+GI + + + + H ++++E + G E+ C V+ Sbjct: 212 PVFVKPARAGSSMGISKVDDPGLLEAAI--ERAREHDPKVIVEAGITGREIECAVLEGHG 269 Query: 183 --GDASLDVTEIAVPKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G + V E+AV + FY +E KY + + PA +P + EV+RL+ A +A+ Sbjct: 270 TQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSCPADVPAHVSDEVRRLSAAAFEAL 329 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G++R D + +V EIN PG TP S++P M A +G + L+ ++ A Sbjct: 330 GCEGLARVDCFY-AEDGRVLINEINTMPGFTPHSMYPRMWAASGLPYTALIDELISLALV 388 Query: 299 LR 300 R Sbjct: 389 RR 390 >gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 304 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] Length = 310 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125 Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ +I P V+K GSS+G+ +++ + + + + + + L++EQ++ Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V EI P S Y Y KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D ++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDAS 297 + AS Sbjct: 302 LLTAS 306 >gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] Length = 359 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 157/349 (44%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E ++S+ + + + ++V + ++R + Sbjct: 5 IIVVYGGKSAEHDISILTAFSIIKEIYFDYYEVQPVYINRKGEWLKGEPLTGPVAFSEAL 64 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L + + F VLHG GEDG +Q + E++++P Sbjct: 65 RLEVSQEAHFATSEGEVSTGVLVTPYDLKEEEC-VVFPVLHGPNGEDGTIQGLFEMMDVP 123 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 Y G+LASA MDK+ SKQ+ G+P P + N+ + + P Sbjct: 124 YVGCGVLASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187 +KP GSS+GI + + + ++++ + ++++EQ ++ E+ C V+G+ Sbjct: 184 VKPANMGSSVGISKAENREELTTAIVEAL--KYDRRIVVEQGIEAREIECAVLGNDEANT 241 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V V S FY Y KY + T +PA+I ++ +V+ + A +AI G++R D Sbjct: 242 SVVGEIVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCD 301 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + ++ E+N PG T S++P + G S+++L+ +++ A Sbjct: 302 FFLTE-TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQLA 349 >gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 356 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 56/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GGISSE ++S S + L +++ + + R Sbjct: 3 LAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAW 62 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + ++ D F VLHG GEDG +Q +LEL IP Sbjct: 63 ERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIP 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPY 128 Y G+ ASA +MDK +K+V+ GV L R+ + ++ L + P Sbjct: 123 YVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPV 182 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+G+ + L + + ++L+E+++DG E+ C V+G+ Sbjct: 183 FVKPCSQGSSVGVAKANN--LLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQ 240 Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + + P +FY+++ KY +S +PA I + V++ A + A+GCRG+SR Sbjct: 241 ASTVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRV 300 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF S +V + E+N PG T +S++P++ Y G + ELL ++ A Sbjct: 301 DFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350 >gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 304 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 356 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 152/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ ++V I + Sbjct: 6 ICIIYGGKSAEHDVSILTAQNVLNAINKDDYQVDIIYITNDGAWKKKDDITENVEDVDSL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 RLEEVEEGEISNLLTNSSSGQPYAAVFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 +MDK+ KQ+ + G+P P + R + + + P +KP GSS+ Sbjct: 126 STMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYQSNILKLVKDKLEFPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T+ V Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTQPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYLDGKVQLSIPAELDSEVQTTLRNMAAEAFKATDCSGLLRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ ++E A Sbjct: 303 FINETNAMPGFTQYSMYPSLWENMGLSYADLITKLIELA 341 >gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX] gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 371 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 163/362 (45%), Gaps = 65/362 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE E+S + + SA++ + + I + R L P Sbjct: 9 VAVIFGGRSSEHEISCVTAGSVMSAIDTDRYDILPIGITRDGDWRLVTADPSELAIVDGK 68 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ +LHG FGEDG +Q +LEL Sbjct: 69 LPAVPDSGARLALALDTPGAFLEVAPDSLPRLVGQVDVVLPLLHGPFGEDGTIQGLLELA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPP 127 + Y +G+ ASA SMDK+ K ++++ G+ P + V + +D+ + Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLD-LLQSSSWNHGDQLLIEQYVDGIELTCGVMG--- 183 +KP + GSS+GI + ++ H ++++E + G E+ CGV+ Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAARAHDPKVIVEAGIQGREIECGVLESLD 248 Query: 184 ----DASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 D SL EI V + DFY +E KY S + + PA +P ++ + V++LA A A+ Sbjct: 249 GGEPDVSLPA-EIHVAEGYDFYDFEAKYLSNSGLSI-PADLPDEVTQRVRKLAAEAFDAL 306 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G++R DF + +++ EIN PG TP S FP+M A +G + L+ ++ A Sbjct: 307 GCEGLARVDFFY-GDDGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTALV 365 Query: 299 LR 300 R Sbjct: 366 RR 367 >gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] Length = 372 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 150/361 (41%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + + H +++IE + G E+ C V+ Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235 ++ E+ FY +E KY S +S V PA +P D+ ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQDRLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 387 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E VSL S A S ++ + I + +S L Sbjct: 44 IAVIFGGCSPEYSVSLQSAYAVISHMDTEVYTPVLIGISQSGDWFLYEGDIEKIVSDTWC 103 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D AF VLHG GEDG +Q + E+ IP Sbjct: 104 GGKDCTPVVVSPNRTSHNLLLLENGKVKKLHIDAAFPVLHGRNGEDGTIQGLFEMAGIPV 163 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLK 134 G+L+SAL MDK R+ ++V + G+ V S ++ + + I P +KP+K Sbjct: 164 VGCGVLSSALCMDKDRAHKLVHTAGIAVPSSFVLGKSASVATALQQAEKIGYPLFVKPVK 223 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS GI + +P L ++ + ++++E+ + G E+ C ++GD L V E+ Sbjct: 224 AGSSFGITKVSSSNELPAAL--ELAFEYDKRVIVEECISGFEVGCAILGDEDLTVGEVDE 281 Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + F+++ KY+ S +PA+IP + +++++ A ++ + C+G +R D P Sbjct: 282 IELSGGFFNFTEKYTLKTSAIHVPARIPQNTAEQIKQAAKTIYRTLDCQGFARVDLFLTP 341 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ + E+N PG T S +P M AG++F +++ ++E A Sbjct: 342 S-GEIVFNEVNTIPGFTTHSRYPNMMKAAGFTFEQIVSALIEQA 384 >gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 304 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 8/284 (2%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A AL +G + D L + D AF VLHG GEDG +Q +LE Sbjct: 2 SLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHGRGGEDGQIQGVLEW 59 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP 132 L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T + P +IKP Sbjct: 60 LNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLDSVIAELGLPVIIKP 119 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 + GSS+G+ ++K + + +++ H ++ E+++ G E T + L V + Sbjct: 120 VHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVIRL 177 Query: 193 AVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 P FY YE KY + + +P + K++Q L A QA+G G R D + D Sbjct: 178 QPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAMQD 237 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 238 EQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 280 >gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355] Length = 353 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+GC G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEKAFAKR 348 >gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] Length = 368 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 156/366 (42%), Gaps = 71/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S A L+ + ++V + + + L Sbjct: 6 VAVLYGGRSSEHSVSCVSAGAVMGHLDRSRYEVIPVGITEAGAWTLGSDDTADLRIADRI 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ F V+HG EDG +Q +LE Sbjct: 66 MPVVDAGRPRVALGLSTDDRGVLRFADGDRAGQEIARVDVVFPVMHGTHAEDGTIQGLLE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L IPY G+ ASA MDK +K V+ + G+P+ +++ T + + P Sbjct: 126 LSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQVVLRPGTATLSPADRDRLGLPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183 +KP +GGSS+GI + + + + ++ + +++++E + G E+ CGV+ Sbjct: 186 VKPARGGSSIGITKVSRAADLDAAIAEARRF--DEKVIVEAAIVGREIECGVLEYPDGRV 243 Query: 184 DASLDV----------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 +ASL E FY ++ KY +T LPA +P + ++++ LA Sbjct: 244 EASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVTTFDLPADLPAEQTEQLRTLAVE 303 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ RG+SR DF E+N PG TP+S++P+M A G + LL ++ Sbjct: 304 AFHALDARGLSRVDFFVTAEG--PVINEVNTMPGFTPISMYPQMWAATGVDYESLLDTLI 361 Query: 294 EDASCL 299 A Sbjct: 362 RTAIAR 367 >gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] Length = 304 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 362 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 166/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] Length = 349 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 61/349 (17%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGL------ 44 + +L GG S E EVS++S G+ + + + + + ++ Sbjct: 6 VGLLFGGRSGEHEVSINSAAAIAQALQIGEN------GSKYDILPVYIQKNGVWLAGDTA 59 Query: 45 ------------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L P ++ VLHG GEDG +Q +L L+++P+ Sbjct: 60 SKVLETKTPLSTEDTNPSQLWQFPPQVQEVEVWVPVLHGPNGEDGTIQGLLRLMQVPFVG 119 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYV 129 SG+L SA+ MDK+ K + G+P V R + + + + P Sbjct: 120 SGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCF 179 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI ++ + L ++S++ +++IE V+ EL C V+G+ + Sbjct: 180 VKPANLGSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKA 237 Query: 190 TEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + + DFY YE KY+ S +PA +P I ++Q +A A + + G++R D Sbjct: 238 SVVGEVTFEGDFYDYETKYTEGRSQIHIPANLPDKIVTQIQEMAIQAFKTVDAAGLARVD 297 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +++ EIN PG T S++P++ G +F +L+ +V+ A Sbjct: 298 FFYVEETEEIYLNEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 346 >gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1] Length = 351 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 113/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T + ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++K L + W ++L+IE++V G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus] Length = 345 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E VS+ S + A +L+ ++ I + + L Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 +Q + L + + ++LIE+ V G E+ C +MG+ + +V +A+ F Sbjct: 186 TEQELKAALETAREF--DSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST + PA IP + VQ A ++A+GCRGI+R D V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340 >gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 353 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S+E VS S A + L+ F+V I + R Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 49 -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F +LHG FGEDG VQ + EL +PY Sbjct: 67 EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P +++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194 SS+G+ + + P + + +++L+E + G E+ GV+ D +L + A+ Sbjct: 187 SSIGVSKVTTWEEFPAAVDLAL--EDDEKILVEPEIVGKEVEIGVLHYADGTLLASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR DF Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 305 FVTKDS--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353 >gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 309 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 161/306 (52%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S ER +SL SG ++L +G ID L H K AF LHG Sbjct: 8 IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++L+ L IP+T S L SA+S++K ++K + S +PV P + +N+ + Sbjct: 68 RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L+ P ++KP + GSS+GI ++ +++ + + + +LIE++ Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIF--DNSILIEKF 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G L + I P++ FY+Y KY S +T+ P+ + E++++ Sbjct: 186 IYGEEYTISILGKKILPIIRI-CPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A I G R D + D K + LE N PGMT S+FP A AG S++ L+ Sbjct: 245 LTAWNIIDGTGWGRVDVIMDYK-NKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303 Query: 292 MVEDAS 297 ++E A+ Sbjct: 304 ILELAN 309 >gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 RVR 306 >gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ST ++P ++ + V + + ++A Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A G + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 RVR 306 >gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda] gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda] Length = 324 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 171/301 (56%), Gaps = 5/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 + +L GG+S+EREVSL S +AL G++V++IDV + + + L+ + +P FN L Sbjct: 27 VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N Sbjct: 87 GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I PYVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203 Query: 180 GVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + + EI + K FY Y+ KYS + H++P +P++ +V +A ++ Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG R + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323 Query: 299 L 299 Sbjct: 324 D 324 >gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058] Length = 353 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] Length = 310 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125 Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ +I P V+K GSS+G+ +++ + + + + + + L++EQ++ Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V EI P S Y Y KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D ++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDAS 297 + AS Sbjct: 302 LLTAS 306 >gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211] gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211] Length = 348 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + +L GG S+ER+VS+ S ++ A++ F V + + Sbjct: 6 IILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKL 65 Query: 41 ---SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + +KP + F VLHG GEDG +Q LE+L++PY IL+S+++ Sbjct: 66 MTNDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V++S G+P P + V + + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSY 202 + + L ++ + ++LIEQ V+ E+ G++G+ + V FY Y Sbjct: 186 ENQDELRSALKL--AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAK+ D+ +++ A A AIG G+SR DF + ++ E+ Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTDK-GEILLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336 >gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491] gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis WUE 2594] Length = 304 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHFQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTA 301 >gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629] Length = 351 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T + ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] Length = 304 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 362 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 362 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 362 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 304 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIERYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 304 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 87/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ST ++P +I + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPGEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S E +V++ S + SA+ ++V I +D++ V Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 48 ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P +KP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L + ++ + + L+EQ +D E+ V+G+ + T Sbjct: 188 MGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V + FY Y KY + +PA +P D+ ++ + A A+ +G G+SR DF Sbjct: 246 VVKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYTMLGGSGLSRCDFFLTN 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQ 346 >gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 304 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ST ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 304 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IEQY+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEQYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 54/346 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG SSE EVSL S + ++ + ++V + + + +L Sbjct: 7 LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG +Q + +L +IP+ Sbjct: 67 GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPL 133 G+LASA+SMDK +K V++ VP +LV + + S PY IKP Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI + + L ++ H ++LIE+ + G E+ VMG+ + V+ + Sbjct: 187 NAGSSVGISKANNKEELISGLYEAV--KHDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244 Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY++ S V+ A +P +I ++++ A A+ +G+SR DF Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + ++ + EIN PG T +S++P + A G S +E++ ++E AS Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349 >gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 348 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 68 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 188 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343 >gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS] gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS] Length = 364 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 57/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------------VGL 44 +A+ GG S+E E+S+ S ++ A+ ++ +++S + +DR + Sbjct: 6 VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65 Query: 45 VLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 +L P D+AF LHG++GEDG +Q L+ Sbjct: 66 LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPP 127 IPYT G+ ASAL+MDK+ +K + G+ V + + ++ P Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI ++ + + L + + L+E + G E+ V+G++ Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENAC--GLDSKALVEAAISGREIEVAVLGNSDP 243 Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +E +P SDFYSYE KY + V+PA +P + +EV++ A +A+GC G++R Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 DF + + +V EIN PG T +S++P M A +G F Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343 >gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 353 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273] gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273] Length = 361 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 112/349 (32%), Positives = 176/349 (50%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S E E+S+ S +A A+ ++ ++V + + R G Sbjct: 6 VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65 Query: 45 ------------VLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L + D+AF VLHG++GEDG VQ +LE L++P Sbjct: 66 LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI-----SPPYV 129 T G+LASAL+MDK +K + G+ V S+ V R ++ H + S P Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP+ GSS+GI + + + + + S ++LIEQ V G E+ V+G+ +L+ Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHACSL--DSKVLIEQAVKGREVEVAVIGNDTLEA 243 Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + P S+FY YE KY + +PA+IP D+ ++V+ A A++A+GCRG+SR D Sbjct: 244 SPCGEIEPGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F D + + + EIN PG TPVS++P + A AG F EL ++ A Sbjct: 304 FFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMELTDRLIRLA 352 >gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 351 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 159/336 (47%), Gaps = 49/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S EREVSLSSG +AL G +V +D Sbjct: 3 IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62 Query: 38 --VDRSVGLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 + R V + K D+ F LHG GE+G +QA+L+ I Sbjct: 63 WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 YT +G +MDK +K ++ + G+P L +R +S P V+KP GS Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLYSRG--ESLEPFPYPCVVKPCGCGS 180 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI +++ + + L S++++ D++L E + G E + G++G+ +L EI +PK Sbjct: 181 SVGITMVEGEDQWEMAL--DSAFSYEDRVLAEVKITGREFSVGILGERALPAIEI-IPKK 237 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY YE KY + + + PA + + + + +A H+ +G SR DFL + Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLM-EEDGSL 296 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F LE N PGMTP S+ P+ A AG S++EL +V Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQELCEEIV 332 >gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678] Length = 353 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ + + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 302 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 166/299 (55%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L+ ++V I +D + ++ D+A LHG Sbjct: 3 VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ GV + + + Sbjct: 63 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGVATPDWVHLIKGEELP 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + L+ P V+KP GGSS+G+ ++ ++ + + W ++ +IEQY+ G E+ Sbjct: 123 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKW--DNESIIEQYLIGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ + L V I + F+ Y+ KY ++ P ++PL I+ V + A ++++A Sbjct: 181 TCPILNEQLLPVLSIK-HTAVFFDYQAKYDDASTVEE-PVELPLAIHDRVAKAAMISYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL ++E + Sbjct: 239 LRCTVYARVDMLI--KDGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIESS 295 >gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36] gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36] Length = 353 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] Length = 325 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 124/307 (40%), Positives = 179/307 (58%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GGIS ERE+SL+SGK A+AL +AG+ V +D R L + D+AF L Sbjct: 17 VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIAL 76 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG+ Q ILE L IPYT S LAS ++MDK SK + G+PV PS+ R M Sbjct: 77 HGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADM 136 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ P +KP+ GSS GI ++K + + ++ HGD++++E V G Sbjct: 137 PSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAI--ELAFEHGDKVMVEHRVFG 194 Query: 175 IELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +E + +GD +L V EI +P +S+FY E+KY+ N H +PA++P D+Y +VQ Sbjct: 195 VECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQD 254 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH+A+G GISR+D + LE N PGMT S+ P+ A +AG +F +L Sbjct: 255 IACRAHEALGLFGISRTDVIVTEDG--PIILETNNIPGMTSESLVPDEARHAGIAFSDLC 312 Query: 290 LWMVEDA 296 +VE A Sbjct: 313 AELVELA 319 >gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 328 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 16/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 +AVL GG EREVSL SG A SALE+AGFKV D+ + + D F L Sbjct: 17 VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHIDSVFIAL 76 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 HG++GEDG VQ+ L+ L +PY+ SG LA LSMDK +K +++ GVP +LV + Sbjct: 77 HGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVLVLKGSS 136 Query: 116 FTMDSQHLISPP---YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 F+++ + V+KP GGS+LG+ V+ Q + + +W + + +IE+Y+ Sbjct: 137 FSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRCVIEKYI 194 Query: 173 DGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG++L V +L I P+ FY Y+ KY+ + +++PA I ++ Sbjct: 195 DGVDLAVTVWKQKGYLEALPEVMI-CPEKGFYDYDSKYTPGKTRYIVPAPFDPSIRSDIH 253 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A +A+ C G +R DF + + LE+N PGMT S+ P+ AA AGY F Sbjct: 254 QMACRAFEALSCEGYARVDFRVEEK-GTPWVLEVNTAPGMTGTSLTPKAAAAAGYDFPAF 312 Query: 289 LLWMV 293 L +V Sbjct: 313 LSHVV 317 >gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121] gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121] Length = 320 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 + V+ GG +EREVSL SG +AL+++G++ + +D+ + L DLAF Sbjct: 8 ILVIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAF 67 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 LHG GEDG +QA+LEL+ PYT S LA +MDK+ SK+ GVP + Sbjct: 68 IALHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPTPTYLAFRA 127 Query: 116 FTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ P ++KP + GS++GI + L + + + +L+EQ+ Sbjct: 128 PDASDIDAIEDELAYPVIVKPSREGSTIGINKANDRTQLESALAK--AREYDSDVLVEQF 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E T ++ D + V + + + Y Y+ KY + ++ ++LP+ + D VQ++ Sbjct: 186 IAGPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+Q++GC G R D + D + LE+N PGMT S+ P AAY S+ L+ Sbjct: 246 ALDAYQSLGCSGWGRVDVMQDQA-GVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALVE 304 Query: 291 WMVEDA 296 + + A Sbjct: 305 KIAQAA 310 >gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] Length = 367 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S E EVSL S A+ V I + ++ L Sbjct: 3 IAIIYGGRSGEHEVSLVSASFVVRAIGSE-HTVYLIGITKNGEWYLQPSSLLGHIRKDTS 61 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F VLHG+FGEDG +Q + E+ ++ Sbjct: 62 AVLTIKCDKAARVAVIPGGGTAAGLSVNGTPIAADVVFPVLHGSFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126 PY G+LAS+ +MDK +SK + +P+ P + V +F D ++ + Sbjct: 122 PYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCVRKFQWDNPKEREGFILHAEKELEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+G + + ++ W ++LIE + E+ C V G+ Sbjct: 182 PLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLW--DSKVLIEACIAAREIECSVTGNDE 239 Query: 187 LDV--TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 V +P +FY Y+ KY + +PA I + +E++ +A A++A+ G+ Sbjct: 240 YVVYTPGEIIPSHEFYDYDAKYIDPDGAQLKIPADIDDEQRREIRSIAGKAYRALDLTGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF D ++ ++ E+N PG T +S+FP+M +G +REL++ + + A Sbjct: 300 ARVDFFIDKKTKTIYLNEVNTIPGFTAISMFPKMCEASGMPYRELIMHLFDLA 352 >gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 356 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + ++ GG S+E +VS+ + + +A++ +++ I + D Sbjct: 6 VCIVYGGKSAEHDVSILTAQNVLNAIDKEQYQIDIIYITNDGAWKKKENIVDTINDIDSL 65 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RLIDVEAGEISKLLSQGSTGNAYSAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ + G+P P + R + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ ++ +L+IEQ ++ E+ V+G+ + T + + Sbjct: 186 GISKCNNEEELKNGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVIKEV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKAKYKDGKIKLDIPADLDEEVQMTLRNMAVEAFKATDCAGLLRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ ++E A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGVSYSDLIKKLIELA 341 >gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] Length = 349 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 161/340 (47%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S+E EVS+ S ++ + L+ + + + I + ++ Sbjct: 8 IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67 Query: 49 -------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 DLAF VLHG +GEDG +Q E+L+IPY + +SA+ Sbjct: 68 IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSL 139 SMDK K++ + +P ++ + F + + P+ +KP GSS+ Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPK 196 GI + + ++ +S++ H ++++IE +V E+ ++ + + + + + Sbjct: 188 GITKVNEKKNF--AEAINSAFEHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEIIAQ 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY + V+PA+I I KE++ LA A A+G ++R DF + Sbjct: 246 HDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NND 304 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P + +G+ +++LL M+E A Sbjct: 305 LLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344 >gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] Length = 376 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 155/362 (42%), Gaps = 68/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE +S + +AL+ + V I + + VL Sbjct: 9 VAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGAL 68 Query: 50 -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72 + D+ +LHG FGEDG +Q +L Sbjct: 69 PEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQGLL 128 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLI 124 EL + Y SG+LASA MDK K +++ G+PV P D+ + Sbjct: 129 ELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEVEAL 188 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS+GI + + + + ++ S H ++++E + G E+ CGV+ D Sbjct: 189 GYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVS--HDPKVVVEAALVGREIECGVLED 246 Query: 185 -------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 SL V DFY +E KY S N PA +P D+ V+R A + Sbjct: 247 LDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVFE 306 Query: 237 AIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G G++R D DP + + EIN PG TP S++P M A G + EL+ +++ Sbjct: 307 AMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQ 366 Query: 295 DA 296 A Sbjct: 367 LA 368 >gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 358 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 50/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S EREVSLSSG A+AL + G +V +D Sbjct: 20 IIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFS 79 Query: 39 -------------------DRSV---GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 +++ G++ A + D+ F LHG GEDG +QA+LE Sbjct: 80 SEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYG 139 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IP+T S L+MDK SK + GV L + + P V+KPL G Sbjct: 140 IPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCG 197 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ ++++++ L ++++HG ++L+E+ + G E + GV+GD +L EI +P+ Sbjct: 198 SSVGVTIVEREEEWSAAL--EAAFSHGGRVLVEKKITGREFSVGVLGDRALPAIEI-IPE 254 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 S FY Y+ KY + + PA I +++ A H+ + SR DF+ D Sbjct: 255 SGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++ LE N PGMTP+S+ P+ A AG ++ EL +V + Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNN 352 >gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 382 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 165/340 (48%), Gaps = 52/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S+ER+VSL +G +L G + + +D+ +G + Sbjct: 42 IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101 Query: 46 LAHLK-------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 +LK D+ F LHG+ GEDG VQA +L Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L I YT + L+SA+SM K +K+V+ G+P+ + +++ + P V+KP Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGH--KIEYVPFPCVVKPCC 219 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ + ++ L + ++++ D +L+E++VDG E + V+ +L V EI Sbjct: 220 GGSSVGVSIAHNEKEFEDALDE--AFSYEDTVLVEEFVDGREFSVAVLDGKALPVIEIE- 276 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P FY Y+ KY + ++ PA IP DI ++Q A QA G +R D L D + Sbjct: 277 PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLDK-N 335 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F LEIN PGMT S+ P+ AA G S+ EL ++E Sbjct: 336 NNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIE 375 >gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] Length = 310 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 164/305 (53%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLES 125 Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ +I P V+K GSS+G+ +++ + + + + + + L++EQ++ Sbjct: 126 AEAIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVVRVDVMTDHAD-KMYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDAS 297 + AS Sbjct: 302 LLTAS 306 >gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275] gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis 8013] gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579] gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385] gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945] gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013] gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136] gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149] gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196] gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33] Length = 304 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 304 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] Length = 311 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 246 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv] gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium tuberculosis H37Rv] gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra] gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] Length = 373 Score = 298 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 368 >gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 304 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20] Length = 388 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRNRYEVLPVGITPEGQWLLVEDDPAALELSDNR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEVLGQVDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------ 125 ++ IPY G+LASA MDK +K ++ + G+ P ++V + + D + ++ Sbjct: 141 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLAGAIKAARA--VDPKVLVESGIVGREVEVAVLQGR 258 Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234 D +A P +FY YE KY + ++ V PA+I + + A A Sbjct: 259 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALLMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF V EIN PG TP S++P M +G + EL+ ++E Sbjct: 319 FEALGCEGLARVDFFLTEAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 377 Query: 295 DASCL 299 A Sbjct: 378 LAVAR 382 >gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 310 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 168/302 (55%), Gaps = 13/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER++S+SSG A +L +G K D + L K D A+ LHG Sbjct: 5 VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K + S G+PV P + + + + Sbjct: 65 KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124 Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+GI ++ + + ++N+ + +L+EQ+ Sbjct: 125 NLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAI--EVAFNYSNTILVEQF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L +I K++FY + KY ++ ++ P+ + L K+++++A Sbjct: 183 IKGTEYTVSILDEKILPSIQIIT-KNNFYDFASKYQLSSTQYLCPSGLNLKQEKKLKKIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D + K + LEIN PGMT S+ P A G SF EL+L Sbjct: 242 KKAWDTLGCNGCGRIDVILD-SNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300 Query: 292 MV 293 ++ Sbjct: 301 IL 302 >gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 365 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 61/353 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + AL+ F+V + + R+ VL P Sbjct: 9 VALVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGKWVLTSADPAQLAISARR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITADAGADLVLRADPTGSGLMVLDPAEGPRAIADVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ + G+PV P ++ + + + + P + Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAVLRNGVTLSEEDKRRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP + GSS GI + D + L+ +++ ++L+E + G E+ CGV+ + Sbjct: 189 KPSRAGSSFGITKV--DDWVDLEAAVAAAREIDPKVLVEAAIVGREIECGVLEGEAGGGA 246 Query: 191 EIAV-------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 E +V D+Y +E KY S + LPA +P + ++VQ A A A+ C G+ Sbjct: 247 EASVLVEVRAGGDHDWYDFEAKYLSEP-EYDLPATLPEHVTRQVQEYAVRAFAALDCAGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF P V+ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 306 ARVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAASGLEYPKLVNRLIRTA 357 >gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium] Length = 343 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VSL S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337 >gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] Length = 320 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+E E+SL SG+ A AL G +V +D D+ F LHG Sbjct: 14 IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG +Q+ L+ L IPY+ S L+ K SK+ V +L++ Sbjct: 74 TYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDAG 133 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GSSLG+ ++K + +P L + +++ ++E + G Sbjct: 134 RIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQAL--ARCFHYDSFGILESAIKGT 191 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T V+ D L + +I P +F+ YE KY+ ++ ++ +P ++ + + + A Sbjct: 192 EWTVTVVDDQVLPLIQIQTPH-EFFDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTGVNAC 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+G GI R D L D ++ + LE+N PG T S+ P+ AA AG F EL + Sbjct: 251 TALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQAL 307 >gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 304 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 162/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4] Length = 351 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41 + VL GG+S+ER+VS +G A AL + G +V +DV DRS Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 42 --------VGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 + LA +K D+ F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + ++ I P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W L++E+YV G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEEN--LIVEEYVKGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] Length = 358 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 353 >gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055] gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum] gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94] gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] Length = 304 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 306 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLH 59 + ++ GG S ER+VSL+ +A ALE G +V+ D+ + +LA + D A LH Sbjct: 3 ILLIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118 G GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P V F Sbjct: 63 GAPGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGK 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D Q + P +K GGSSL + + + D + + G+++++E + G E+T Sbjct: 123 DWQPRLPYPLFVKSNTGGSSLRLGRARNRAEL--DDIMGQIFAAGEEVIMEPVLPGREVT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CG++G+ L I DF++YE KY + + PA I ++ VQ L AH+A+ Sbjct: 181 CGILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRAL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DA 296 G RG SR+DF+ P + LE+N PGMT S+ P A G F +LL ++E A Sbjct: 241 GLRGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLMELGLA 299 Query: 297 SCLR 300 C + Sbjct: 300 DCKK 303 >gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49] Length = 353 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEHAFAKR 348 >gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 304 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 326 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 109/301 (36%), Positives = 172/301 (57%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG EREVSL +G+A +ALE G V+++ + +L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K++ +P + R + Sbjct: 65 RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124 Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V+KP GGSSLG+ ++++ +++ + ++ +G + L+E++V G E Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAVAEAC--RYGGEALVERFVRGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L EIA P+ F YE KY + + LP ++ V+ LA A + Sbjct: 183 VTVGILGGEVLGSCEIAAPREGF-DYEAKYK-GGTNYFLPPRLSATRLANVESLALSAWR 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG R D + F LE+N PG+TP S+ P++AA G F +L+ ++ A Sbjct: 241 ALGCRGYGRVDLICSEEQND-FVLEVNTLPGLTPTSLLPKIAAQRGIGFAQLVERILGLA 299 Query: 297 S 297 + Sbjct: 300 T 300 >gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum] Length = 343 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 150/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S L Sbjct: 6 VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKSGVWKLCEKPCLDWEQYAKY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + V + G+ V ++ S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKVD 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 K + + + + + + ++LIEQ V G E+ C V+G +V +I++ F Sbjct: 186 KAEDLCAAI--NEARQYDRKVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+T +PA +P + + +Q+ A +Q +GCRG++R D + Sbjct: 244 HQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARIDLFLRE-DGHIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ EL+ ++E A Sbjct: 303 LNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIELA 340 >gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium] Length = 359 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 22 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 81 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 82 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 141 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 142 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 201 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 202 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 259 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 260 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 318 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 319 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 353 >gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] Length = 351 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41 + VL GG+S+ER+VS +G A AL + G +V +DV DRS Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 42 --------VGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 + LA +K D+ F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + ++ + P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W L++E+YV G E + GV+ +L + Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEEN--LIVEEYVKGREFSVGVIEGKALPI 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 349 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 99/335 (29%), Positives = 163/335 (48%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE EVSL S A + + I + R+ Sbjct: 6 IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + + + D VLHG GEDG VQ ++EL +IP Sbjct: 66 QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G+LASAL MDK R+ Q+V + G+ V S+LV+ + ++ P +KPLK GSS G Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + K + + L ++N+ +++++E+ V+G E+ C ++G+ L V E+ + Sbjct: 186 ISKVVKMEELTKAL--EYAFNYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ Y+ KY+ ST +PA+I +++Q A + +Q + C+ +R D P + ++ Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTP-NNEIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T S FP+M G+ F EL+ +V Sbjct: 303 FNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIV 337 >gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330] Length = 353 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 REELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] Length = 288 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 116/296 (39%), Positives = 163/296 (55%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL+SGKA +L G+ IDV + ++ + D A+ H Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIDNEYDFAYLAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L++L PYT SG AS ++MDK+ +K++ S GV V + Sbjct: 63 GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKVITKKLAESAGVRVAKNY------DK 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P VIKP GSS+GI + + G +++IE+ + G ELT Sbjct: 117 VSDIDSYPVVIKPALEGSSVGIFFCHNREEAEKAAGELV----GKKIVIEEMITGDELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ + V I +PK++FY YE KY+ S H PAKI Y E A H +G Sbjct: 173 GVINGEGIGVLRI-IPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVLG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285 >gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 304 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702] Length = 365 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 163/355 (45%), Gaps = 59/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AVL GG +SE +S S A S L+ ++V + + + V Sbjct: 15 VAVLYGGQNSEHSISCLSAAAVMSHLDPDRYEVVPVGITETGMWVKGTTDTEALSAHGRD 74 Query: 48 -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + + D+ F VLHG GEDG VQ +LEL Sbjct: 75 LPTVKMSRGVHLVPGSFASGRGQLRYGDGSLYAEVDVIFPVLHGRNGEDGTVQGVLELSN 134 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPL 133 +PY +G+LASA MDK +K + + GVPV +++ T + + +I P +KP Sbjct: 135 VPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEVVLTERRDLTDEEKEMIGLPVFVKPA 194 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE 191 +GGSS+GI + + D ++ ++ H ++L+E + G+E+ CGV+ D ++ ++ Sbjct: 195 RGGSSVGISKVSDWADL--DAAEAHAFEHDTKILVEAMLHGVEVECGVLQYPDGTVHASQ 252 Query: 192 IAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 ++ + FY ++ KY ++ +PA +P V+R A +A+ C G++R Sbjct: 253 PSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLPEGQADAVRRWAVETFRALDCEGLAR 312 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 DF E N PG TP+S++P+M G ++ ELL ++ A + Sbjct: 313 VDFFVTEDG--PVLNEPNTMPGFTPISMYPKMFEATGVAYTELLDILIARALVRK 365 >gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 308 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 164/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ + + R Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + LI P V+KP GGSS+G+ ++ ++ + + W ++++IEQY+ G E+ Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKW--DNEIIIEQYMIGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ D L V I + F+ Y+ KY ST P ++PL I+ V + A ++++ Sbjct: 188 TCPILNDKLLPVLSIK-HTAVFFDYQAKYD-DASTIEEPVELPLAIHDRVAKAAMTSYKS 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL +++ + Sbjct: 246 LKCSVYARVDMLIKE--GVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIDSS 302 >gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanB ligase gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis] gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|741410|prf||2007289A D-Ala lactate ligase Length = 342 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ + F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++ + ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ ++PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P MAA AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLA 339 >gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 304 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IEQY+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEQYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKPLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 46/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+EREVS++SG AL +DV Sbjct: 7 IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66 Query: 39 DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 +++ + K D+ F LHG GEDG QA +L I YT Sbjct: 67 KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSL 139 SG LASA+ MDK +KQ+ S GVP S+ + + + P V+K GGSS+ Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G++++ ++ + + + +Q+L+E ++ G E + GV+ +L V EI +P+ + Sbjct: 187 GVVLVHQESEYEDAVK--TCFELDNQILVEDFIKGREFSIGVINKKALPVVEI-IPRDGW 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY+ + V PA + ++ K++Q++A A AIGC +R+D + D +F Sbjct: 244 YDYKNKYN-GATEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 LE+N PGMT S+ P+ A G F L ++VE Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVE 336 >gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] Length = 376 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E E+SL S + + A VS I + + L Sbjct: 3 VVLIYGGKSGEHEISLLSCASVIRNI-SAKHNVSLISISKGGKWYLEDDSVFKEIRNNPE 61 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F VLHG +GEDG VQ + E+ + Sbjct: 62 AALCVHENESREVKVSFGRGKDNVFFACGNYIPCDVVFPVLHGTYGEDGTVQGVFEMAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISP 126 P+ G+LAS+ +MDK +K ++ + G+PV P + ++R + ++ + Sbjct: 122 PFVGCGVLASSAAMDKETTKILLKNAGIPVVPYMCISRSQINSSSLYDKLIEEAIEKLEF 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS G + + + + L+++ SW +++LIE+ +D E+ C V G++ Sbjct: 182 PLFVKPCAAGSSDGASLARNKRELSFALMEAFSW--DNKVLIEKAIDAREVECSVTGNSV 239 Query: 187 LDVTE------------IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFL 233 +E VPK DFY Y+ KY+ + + +PA + D + ++ A Sbjct: 240 TATSESDCTLLKAYGPGEIVPKHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKK 299 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ I G+SR DF D + +++ EIN PG T +S+FP+M G + EL+ +++ Sbjct: 300 AYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFTKISMFPKMCDADGLEYSELIDYLL 359 Query: 294 ED 295 ++ Sbjct: 360 KE 361 >gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72] Length = 353 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+ERE+S+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 RAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G++R DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTE-DSQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c] gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P ++ Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ RLA Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIARLALA 256 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 257 AFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_34B07] Length = 371 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 8 LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67 Query: 41 -----------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 G L + ++ F +LHG +GEDG +Q +LEL + Y +G Sbjct: 68 DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 + ASA+ MDK+ ++ + ++ G+P ++ R + P +KP Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI + Q + L +S ++ ++ L G + + Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGE 247 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P +FY Y KY S V+PA + + VQ LA A +AI C G++R D Sbjct: 248 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFM-C 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P++ A AG + +L+ +++ Sbjct: 307 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQ 348 >gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 348 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 162/332 (48%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S+EREVS+ S ++ A++ F V + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67 Query: 41 -SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++MD Sbjct: 68 NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P + ++R +++ ++S P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G S+ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336 >gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus] gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus] Length = 343 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S + A+ +++ ++ I + + + Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + D S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 186 GADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+ +PA + +++ +Q A ++A+GCRG+SR D + + Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFL-QDNGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLI 337 >gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 353 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 304 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 GEDG+VQ +++ +PYT S +L SALSMDK+R+KQV + G+P ++ Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 125 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L I VP+ +Y Y KY + ++ +V P + E+ RLA Sbjct: 183 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIARLALA 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 241 AFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300 Query: 294 ED 295 E Sbjct: 301 EQ 302 >gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus JCSC1435] gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435] Length = 356 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS + + +A++ + V I + Sbjct: 6 ICIVYGGKSAEHDVSKLTAQNVLNAIDKERYLVDIIYITNDGLWKKKENITEEIKEIESL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 NMTDIEAGEITILLKESSNGKPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ ++ +L+IEQ ++ E+ V+G+ + T + Sbjct: 186 GISKCNNEDELKSGIEEAFQFDR--KLVIEQGINAREVEVAVLGNDYPETTWPGEVIKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY + +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341 >gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_40H22] Length = 362 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 162/347 (46%), Gaps = 53/347 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50 +L GG S+E EVS+ S ++ A++ ++V + R+ L K Sbjct: 8 LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67 Query: 51 --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ +LHG GEDG VQ +LEL + Y +G+ Sbjct: 68 NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 ASA+ MDK ++ V + G+ +++ R D + + P +KP+ Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA- 193 GSS+GI +S+ + ++S + ++++E V+ EL C V+G+ + I Sbjct: 188 GSSIGISKAHDTKSLESAIDLAAS--YDVKMMVETSVENARELECAVLGNDDPKASVIGE 245 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P ++FY Y KY S ++PA++P I E+QR++ A +AI C G+ R DFL P Sbjct: 246 IIPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +F EIN PG TP+S++P + +G + EL+ ++E A Sbjct: 306 S-GDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIELALAR 351 >gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 364 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 158/356 (44%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE +S S + L+ F+ + + R VL Sbjct: 7 VAVVFGGRSSEHTISCLSAGSVLGHLDPERFEAVPVGITREGRWVLGSGDSAQLAVRGRE 66 Query: 50 ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75 + D+ F VLHG FGEDG +Q +LEL Sbjct: 67 LPSVDDGQGLVLAGDPSSQGLVAVEAGRESELLSRVDVVFPVLHGAFGEDGTIQGLLELA 126 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIK 131 IPY G+LASA +MDK +K+++++ G+PV + R + + P +K Sbjct: 127 GIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFSALKRGQSTLEQTDREKLGLPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DA 185 P + GSS+GI + + + + + ++L+E V G E+ CGV+ +A Sbjct: 187 PSRAGSSVGISRVADWAGLDAAIALARA--TDPKVLVEAAVVGREVECGVLEFPDGHVEA 244 Query: 186 SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 SL + + + +Y +E KY ++ +PAK+ + ++++ +A A +A+ C+G+ Sbjct: 245 SLPAEIRVLSEDENAWYDFETKYLGDDAELDIPAKLDDALTEKLRAMAVEAFRALDCQGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF ++ E+N PG T S +P+M G + LL +VE A Sbjct: 305 ARVDFFVTE-DHQLIINEVNTMPGFTTKSAYPKMWEVTGMDYPTLLTTLVETAIAR 359 >gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] Length = 301 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 153/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + V+MGGISSEREVSL+SGK+ SA+ + V ++ +D + +V D A +LH Sbjct: 5 VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G +GEDG +QA+LE + I Y+ L S + MDK SK+V+ + +P P + ++ Sbjct: 65 GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D+ + P IKP GGSS+ + + + + + Q D ++IE Y+ G E Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGL--EVDDIVMIEGYLPGDE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAH 235 T ++ +I+ P ++F+ YE KY++ + + ++ E+ + Sbjct: 183 YTSFILNGEVFPTIKISSP-NEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECW 241 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A CR R DF+ + K + LE+N PGMT S+ P A G S+ EL+ ++E Sbjct: 242 DAFNCRAFVRVDFIL--SNGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298 >gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] Length = 348 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 41/328 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D ++V + + + F VLHG GEDG +Q LE+L +PY + +L+S+++MD Sbjct: 68 NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V+ S GVP + ++ + ++ P +KP GSS+GI + Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFVKPANMGSSVGISKAET 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 D + L + + ++LIEQ V E+ G++G++ + T+ V FY YE Sbjct: 188 DGELREALELAL--KYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYEA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + +PA++P ++ +++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTES-GEIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG T S++P + G +++L+ + Sbjct: 305 MPGFTQWSMYPLLWENMGLPYKDLITEL 332 >gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136] Length = 307 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SER VSL S ++ AL+ G +V +IDV + V + +A N++HG Sbjct: 8 IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTVPGDVV--VAVNMIHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QA+LE + YT +G+ S ++ DK SK+ + GVP S ++ + Sbjct: 66 TFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVPTPQSQVL-KLDGVD 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q ++ P V+KP + GSS+G+ ++ ++ + L + + L+E++VDG ELT G Sbjct: 125 QLRLTLPVVVKPPREGSSVGVHIVHTEEELATALADAKQYGQDT--LVEEFVDGKELTVG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G +L V I P S FY KY + + PA + ++ + VQ A A + Sbjct: 183 VIGGEALPVIHIE-PVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAMK 241 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+G R D + + F LEIN PGMT S+ P+ A AG F +L+ ++E + Sbjct: 242 AVGVEVYGRVDVMLRK-DGQPFVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIELS 300 Query: 297 SCLR 300 +R Sbjct: 301 LEVR 304 >gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] Length = 349 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S+ER+VS+ S ++ A+ F V + ++ G + + D Sbjct: 6 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 64 Query: 53 -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F VLHG GEDG +Q LE+L++PY + IL+S++ Sbjct: 65 LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 124 Query: 90 SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142 +MDK+ +KQV+ S +P + + + + + P +KP GSS+GI Sbjct: 125 AMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 184 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + + + + ++LIEQ VD E+ G++G+ + T V FY Sbjct: 185 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 242 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 243 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P + G S+ +L+ +V A Sbjct: 302 ELNTMPGFTQWSMYPLLWENMGLSYSDLIEELVSLA 337 >gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 348 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F VLHG GEDG VQ LE+L++PY + IL+S+++ Sbjct: 66 MTNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ P + ++ + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + ++ + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 EDEAALRSAI--DFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I DI +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum] Length = 343 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii] Length = 306 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 155/304 (50%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG +EREVS + ++ +AL+ G +V ++DV +V +A N++HG Sbjct: 9 IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVHGPDFVVPE--GVFIAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QAILE IPYT +G+ +S ++ DK SK+ + GVP S + Sbjct: 67 TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRSQN-YKLDGSE 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I+ P V KP + GSS+G+ + + + + + +G L+E+++DG ELT G Sbjct: 126 PLSITIPLVSKPPREGSSVGVNICRTGEEWAKGI--EEALKYGTTTLVEEFIDGKELTVG 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+GD L + I P FY KY + + PA++ K VQ A A Q Sbjct: 184 VLGDQVLPIIHIE-PVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAAFQ 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G R D + + F LEIN PGMT S+ P+ AA G F +L + ++E + Sbjct: 243 SCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIELS 301 Query: 297 SCLR 300 R Sbjct: 302 LAAR 305 >gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 362 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ G S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLIRLA 347 >gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 369 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 93/359 (25%), Positives = 154/359 (42%), Gaps = 65/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG SSE +S ++ A++ F+V + + L Sbjct: 7 VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPDGAFTLQEDDASALALDADA 66 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F +LHG GEDG VQ +LEL Sbjct: 67 LPRVADNGTRVRWPDGTAGRELTVRDADGAERSLGRVDVVFPILHGTQGEDGTVQGMLEL 126 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 +PY SG+LASAL MDK +K V+ + G+ V P I V+R + + Sbjct: 127 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGL 186 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P +KP + GSS+G+ + D + L ++ D++L+E + G E+ C ++ + Sbjct: 187 PAFVKPARAGSSVGVSRVSADAGLDSAL--EVAFREDDRVLVESGLVGREVECAILDEGP 244 Query: 186 -----SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + EI V DFY ++ KY + V PA + E++ L+ A +A+ Sbjct: 245 GREPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVD 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG++R DF EIN PG TP+S+FP +G ++ +L+ +++ A Sbjct: 305 ARGLARVDFFLTAEG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVALA 361 >gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 311 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 154/302 (50%), Gaps = 9/302 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 11 GVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGK 70 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---M 118 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 71 YGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLNF 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+T Sbjct: 131 DELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEIT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C + L + I ++F+ Y KY + + ++P ++ + V + + ++A+ Sbjct: 189 CSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKAL 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 247 KCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSLR 304 Query: 299 LR 300 +R Sbjct: 305 VR 306 >gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1] Length = 353 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + K + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 372 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 153/363 (42%), Gaps = 67/363 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S E VS ++ A++ + V + + RS VLA Sbjct: 8 VAIVFGGRSGEHAVSAATAAGVLGAIDRGKYDVVPVGITRSGEWVLAADDAGALEIRDGH 67 Query: 49 -----------------------------------LKPDLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q +LE Sbjct: 68 VPEVDATGDGRLLVPFGSGPAQLVVLSPGAPPNELAGVDVVLPLLHGPFGEDGTIQGMLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125 L +PY SG+LASA MDK K V++ G+PV P ++ D + Sbjct: 128 LAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSAWRRDRAACLDQVASLG 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS+GI ++ + + + H ++++E + G E+ V+ Sbjct: 188 LPVFVKPARAGSSIGITRVESLDRLVEAI--EEAQRHDPKVIVEAAITGREIEVAVLEGR 245 Query: 186 SLDVTEIAVP--------KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +P + FY YE KY S PA +P + E +RLA A Sbjct: 246 GDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGVDLRCPADLPPGVADEARRLAAEAFD 305 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC G++R DF + P + EIN PG TP S+FP + +G ++ EL+ +++ A Sbjct: 306 ALGCEGLARVDFFYTPS-GTLVVNEINTMPGFTPFSMFPLLWERSGVAYPELIDELLQLA 364 Query: 297 SCL 299 Sbjct: 365 LAR 367 >gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1] gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1] Length = 378 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 66/363 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE VS + A++ ++V I + +S VLA Sbjct: 15 VAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSAA 74 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG +GEDG +Q +LEL Sbjct: 75 LPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLEL 134 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 + Y +G+LASA+ MDK K V S G+ V P + V + + Sbjct: 135 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEAVRKRVDKLGF 194 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + LD + H +L+IE + G E+ C V+ Sbjct: 195 PVFVKPARAGSSMGISKVDSME--GLDAAIDEARRHDLKLVIEAGIVGREIECAVLQGRG 252 Query: 187 LDV--------TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 D +AV + FY + KY + PA +P + V+ LA +A A Sbjct: 253 TDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALSCPADMPDEAIARVRELAAVAFDA 312 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G G+SR DF + P ++ EIN PG TP S++P+M A +G ++ +L+ ++ A Sbjct: 313 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLAYGDLIDELIHLAL 371 Query: 298 CLR 300 + Sbjct: 372 TRK 374 >gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] Length = 351 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 169/350 (48%), Gaps = 55/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSL+SG L + G + +DV Sbjct: 3 IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62 Query: 39 -----DRSVGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 ++ LA +K D+ F LHG+ GE+G +QA Sbjct: 63 EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 ++L I YT L SAL+MDK +KQ+ + GVP + + D S ++ P V Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGVPTPLGTNLTKDRKDTALSDLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + + +S+ + D+++IE Y+ G E G++ +L V Sbjct: 183 VKPCSGGSSIGVYIVDTMDAYKEAV--ENSFRYEDEIVIEPYIKGREFAVGIIDGKALPV 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY + + PA I ++ + +QR A LA +A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 D + ++ LE+N PGMT S+ P+ A AG ++ +L +++ + Sbjct: 300 LDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQKSLAR 348 >gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] Length = 270 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 9/276 (3%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 AGF V +ID + L KPD FN LHG + EDG+VQ +LE L IPYTHSG+LA Sbjct: 2 RTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA +MDK ++K + + G+P S+L ++ +++ H++ PPYV+KP GSS+GI ++ + Sbjct: 62 SATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVME 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 S P + + + D +++E Y G ELT V+G +L VT+I V +Y Y KY Sbjct: 122 GDSPP-----TLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASKY 174 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S HV+PA +P DI++ A AH A+GCRG+SR+D+ +D + LE N Sbjct: 175 EVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDESRGLDGLILLETNT 234 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE AA G SF +L+ WM+EDASC R Sbjct: 235 QPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270 >gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] Length = 348 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A++ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D + V + + + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S +P P + V + + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRTAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334 >gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S E +V++ S + SA+ ++V I +D++ V Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 48 ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P +KP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L + ++ + + L+EQ +D E+ V+G+ + T Sbjct: 188 MGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V + FY Y KY + +PA +P D+ ++ + A A+ +G G+SR DF Sbjct: 246 VVKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYPMLGGSGLSRCDFFLTN 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQ 346 >gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S E +V++ S + SA+ ++V I +D++ V Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 48 ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P IKP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI + + + L + ++ + + L+EQ +D E+ V+G+ + T Sbjct: 188 MGSSVGITRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V + FY Y KY +PA IP ++ ++ + A A+ +G G+SR DF Sbjct: 246 IVKEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTN 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 346 >gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153] Length = 304 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1] gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1] Length = 368 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPETLSIRGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+P+ +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + + LD + + H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRV--AEWAALDDAIAHARLHDPKVIVESGIIGREVECGVLEFPDGDV 245 Query: 186 SLDVT-EIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P+ FY ++ KY +PAK+ + E++ LA A A+ Sbjct: 246 RASVIAEIRMPEGAGDDEAFYDFDSKYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M G + L+ +V+ A Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWGAVGVDYGTLVSTLVDTALAR 363 >gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 353 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 377 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +S ++ A++ + V + + R V+A +P Sbjct: 13 VALLFGGRSGEHAISAATAAGVLRAIDRDVYDVVPVGITRDGRWVVAADEPERWEITDGR 72 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +LE Sbjct: 73 LPEVTSDDGAEVVLSLTAGERTLRVLEPGQVPGVLGEVDVVFPLLHGPFGEDGTLQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLIS 125 L ++ Y +G+LASA+ MDK K V+ G+PV P ++ + + + Sbjct: 133 LADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTVILPRDWETRREEATAAVARLG 192 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + +P + ++ H ++++EQ ++G E+ C V+G Sbjct: 193 LPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHDPKVIVEQGIEGREVECAVLGGR 250 Query: 186 S-LD-----VTEIAVPKS--DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 S L EI V FY +E KY ++ + PA +P + +V+ +A Sbjct: 251 SGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLRCPADLPDKVVAQVRSIAVRTFD 310 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+G G+SR D P R V EIN PG TP S++P M G ++ +L+ +++ A Sbjct: 311 AVGAEGLSRVDVFVTPDER-VIVNEINTMPGFTPFSMYPRMWEATGLTYPQLIDELIQLA 369 >gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] Length = 372 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S+++ A +L+ + V I + R V Sbjct: 8 VAVIYGGASGEHSISIATAGAVMRSLDPERYDVLPIGITRDGAWVPGATDASQLTLEAGL 67 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +LE Sbjct: 68 LEVEAAPEAVTLPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLIS 125 + +PY G+ ASA MDK K V+ + G+PV P ++ + +S Sbjct: 128 MAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADVAKMS 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + +P + + H ++LIEQ V+G E+ C V+G Sbjct: 188 FPVYVKPARAGSSLGITRVARIEDVPAAVAAAQI--HDPKVLIEQGVNGREIECAVLGGR 245 Query: 186 SLDVTEIAV--------PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236 +V P+ FY +E KY + T +PA +P +I ++++ A Sbjct: 246 GDTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTMSIPANVPEEISEKIRAQAIATFD 305 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A GC G+SR DF P + F +E+N PG TP S++P + G + +LL ++ A Sbjct: 306 AFGCEGMSRVDFFLTP-EGETFVIELNTIPGFTPFSMYPVLWENTGLPYSQLLDELIALA 364 >gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R] gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316] gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909] gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R] gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316] gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909] gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] Length = 348 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +KQV+++ GVP + S +S P +KP GSS+GI Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 246 KYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] Length = 310 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S EREVSL SG+A AL+ G++V IDVDR + VL ++A LHG Sbjct: 8 IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT + ASA+ MDK SK++ S G+P I + ++ Sbjct: 68 PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127 Query: 121 QHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 L+ +KPL GSS+GI + + ++ S +H + ++E+ ++ Sbjct: 128 DELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSH--RCMVERAIE 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232 G ELT ++ + + EI VP FY Y+ KY++ + +++PA + + V ++ Sbjct: 186 GRELTLSILDGEAFPLIEI-VPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGL 244 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ GCRG+ R+DF+ D + LE+N PGMT +S+ P+ A G +L + Sbjct: 245 AAYHITGCRGLVRADFILDG-EGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303 Query: 293 VEDA 296 ++ A Sbjct: 304 LQGA 307 >gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 400 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 155/359 (43%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S E +S ++ A++ + V + + R+ VL PD Sbjct: 37 VVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDGR 96 Query: 53 --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74 + F +LHG FGEDG +Q +LEL Sbjct: 97 LPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLEL 156 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 ++ Y +G+LASA+ MDK K V++ G+PV P +V D + Sbjct: 157 ADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAGLGL 216 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSSLGI + +P + + + H ++++E + G E+ C V+G Sbjct: 217 PVFVKPARAGSSLGISKVDDLADLPAAV--AEARRHDPKVIVEAGIVGREIECAVLGGRR 274 Query: 187 LD------VTEIAVPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 + EI V + FY +E KY S S + PA + ++ EVQ +A +A Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G+SR D +V EIN PG TP S++P M +G + EL+ +VE A Sbjct: 335 VSGEGLSRVDVFVTEA-GEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392 >gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] Length = 321 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 153/308 (49%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + VL GG S EREVSL SG+A AL+ AG++ ID+ + A DL F VLH Sbjct: 7 IVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117 G++GEDG +QA L+L PY SG LAS L MDK SK + G+ +LV + T Sbjct: 67 GSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGT 126 Query: 118 MDSQHLIS-----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D L+ ++KP GGS++ V+ + + L + G L+E+++ Sbjct: 127 GDLPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGG-ALVEEFI 185 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ELT + G +L EI +P S FY Y+ KY+ S + PA++ + + + Sbjct: 186 PGRELTVAMWDSGSGPEALPAVEI-LPASGFYDYQAKYTDGASRYESPARLSGEEARALS 244 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A A +A+G R R+DF P + LEIN PGMT S+ P A AG + Sbjct: 245 EAAVAAWRAVGLRDYGRADFRL-PPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDF 303 Query: 289 LLWMVEDA 296 L + A Sbjct: 304 LSRLARRA 311 >gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] Length = 361 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 64/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + VL GG SSE +S ++ A++ F+V + + R VL PD Sbjct: 6 VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65 Query: 53 -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75 + +LHG FGEDG VQ +LELL Sbjct: 66 LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127 IPY G+L SA+ M+K +KQV+ + VPV P + V+R + + P Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP + GSS+G+ + + + + D +++ +L+E+ + G EL CGV+ Sbjct: 186 VFVKPNEAGSSVGVTKVSRWEDL--DAALDTAFAEDGLVLVEKAIVGRELECGVLPGRDG 243 Query: 188 DVT------EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 EI V +FY +E KY + V PA++ E+QR+A A +AIG Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G++R DF + F E+N PG TP+S+FP +G S+ +L+ +++ A Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLISDLLDAA 357 >gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B] gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 341 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 161/338 (47%), Gaps = 44/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG SSE ++SL+S + ++ + V I + + Sbjct: 5 IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIEDGSWI 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 VL + + D+ F +LHG GEDG +Q + +LL +P + +L+SAL MD Sbjct: 65 NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIV 143 K SK ++ + V P ++ + +KP GGSS+G+ Sbjct: 125 KAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVSK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-----PKSD 198 +K + S + ++ + ++L+E+ + E+ ++ D T+I + Sbjct: 185 LKAEDSFE--VAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNKE 242 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY YE+KY+ + ++PAK+ ++ +++ LA A++ + CRG++R DF D + +++ Sbjct: 243 FYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEIY 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S FP++ AG + EL+ ++++A Sbjct: 303 LNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340 >gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 297 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P + + ++ Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + IS P +KP GGSS+ +K + + Q+S +++IEQ+V G E+T Sbjct: 126 ADE-ISFPVAVKPSSGGSSIATFKVKSFEELENAYQQASKH---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + I P ++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNNDVYSSVWIE-PLNEFYDYESKYS-GKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 348 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +KQV+++ GVP + S +S P +KP GSS+GI Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 246 KYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 348 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + +L GG S+ER+VS+ S ++ A+ F V + + Sbjct: 6 IILLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKL 65 Query: 41 ---SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + +KP + F VLHG GEDG +Q LE+L++PY IL+S+++ Sbjct: 66 MTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V++S G+P P + V + + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L ++ + ++LIEQ V+ E+ G++ + + + V FY Y Sbjct: 186 ENQDELRSAL--ELAFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAK+ D+ +++ A A AIG G++R DF + ++F E+ Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTDK-GEIFLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336 >gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 355 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+EREVS+SSG A AL G +V +D Sbjct: 3 IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62 Query: 38 ----VDRSVGLVLAHLK------------------------PDLAFNVLHGNFGEDGLVQ 69 + V + ++K D+ F LHG GE+G +Q Sbjct: 63 DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A L+L I YT SG L SAL+M+K +K V + PS + + D+ P + Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINT-PSGELYKNEKDALAWNMFPCI 181 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + ++ + D++++EQ+V G E + G++G +L Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEALKYE--DEIVVEQFVTGREFSVGLIGGKALPP 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA PKS Y Y KY + + PA I + K+++ A A++A+ +R DFL Sbjct: 240 IEIA-PKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D + LE N PGMTP S+ P+ AA G S+ +L ++E Sbjct: 299 LDK-GGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIE 342 >gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium] gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium] gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium] gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium] gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis] gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis] gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein VanA; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanA ligase gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium] gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium] gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium] gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis] gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium] gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium] gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium] gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium] gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium] gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium] gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis] gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis] gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis] gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis] Length = 343 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337 >gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] Length = 348 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 162/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE------------DAGF-------KVSQI------- 36 +L GG S+EREVS+ S ++ A+ G+ + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67 Query: 37 ----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + +S P KP GSS+GI K Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGIS--KS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 D L + ++ + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 186 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A A +AIG G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVRLAEEAFAKR 343 >gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium] gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA / D-alanine--D-alanine ligase [Enterococcus faecium] gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium] Length = 343 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRI 243 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337 >gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] Length = 345 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 44/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDR--------------SV 42 + ++ GG S E +VS+ S A L ++V + +DR S Sbjct: 9 VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68 Query: 43 GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 G LA L+ ++ + VLHG GEDG +Q + L++ P+ SG+L SA Sbjct: 69 GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLG 140 + MDK+ K S+ G+P P V + + + + P IKP GSS+G Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--KSD 198 I + L ++S H +LL+E+ + EL C V+G L + + +D Sbjct: 189 ISKATNRSELQAGLDLAAS--HDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSFDAD 246 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 +Y YE KYSS S+ +PA +P I Q LA A QA+G G+SR DF ++ S + Sbjct: 247 WYDYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASGNLL 306 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S++P + +G EL+ ++E A Sbjct: 307 INEINTLPGFTSQSMYPMLWKASGVPLEELVHQLLELA 344 >gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 353 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + +S P KP GSS+GI K Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGIS--KS 190 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 D L + ++ + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 191 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115] Length = 353 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] Length = 350 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIAKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT L A++MDK +KQV G+ + +++ + D + +S P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP GGSS+G+ ++ ++ L S+ + D++++E+Y+ G E CGV+ + +L Sbjct: 183 IKPCSGGSSIGVYIVSTEEEYAEAL--EKSFFYEDEVVVEEYIKGREFACGVIDNEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY + + V PA IP + + L A +A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDEKGN-LYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIKKSLEAR 349 >gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 370 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 96/357 (26%), Positives = 149/357 (41%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG SSE VS + A++ F++ + + R G L P Sbjct: 10 LLFGGRSSEHSVSCVTAAGVMHAIDRERFEIVPVGITRDGGWTLLDEDPEGWALNTGKLP 69 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F +LHG FGEDG +Q +LE+ + Sbjct: 70 EISSVDHPVHLSTDAQKTSLLSYSDSAVADLGEIDVVFPLLHGPFGEDGSIQGMLEMAGV 129 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLIS------PPYV 129 Y SGI ASA+ MDK K V G V P ++ DS+ + P Sbjct: 130 SYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVITNKQWLRDSEAAMKRCDNLQYPLF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS+GI + + + + + +++IEQ + G E+ CGV+ Sbjct: 190 VKPARAGSSVGITKVDDPSELRAAIEIARA--EDPKVIIEQGIVGREIECGVLEGRGSGP 247 Query: 190 TEIAVPK--------SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGC 240 + ++P FY +E KY + + PA + + E++ LA A AI Sbjct: 248 SRASLPGEIAVADNLHTFYDFEAKYVDGAAAELSCPANLSDEATLEIRELAVKAFDAIDA 307 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G+SR DF + P EIN PG TP S++P+M A G +REL+ ++ A+ Sbjct: 308 EGLSRVDFFYTP-EGDWIINEINTMPGFTPSSMYPQMWAKTGIEYRELIDELIALAT 363 >gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 308 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 163/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ + + + Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLVKGEELP 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + L+ P V+KP GGSS+G+ ++ ++ + + W ++++IEQY+ G E+ Sbjct: 130 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKW--DNEIIIEQYMIGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ D L V I + F+ Y+ KY ST P ++PL I+ V + A ++ + Sbjct: 188 TCPILNDRLLPVLSIK-HTAVFFDYQAKYD-DASTIEEPVELPLAIHDRVAKAAMTSYTS 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL +++ + Sbjct: 246 LKCSVYARVDMLIKE--GVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALLDSIIDSS 302 >gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4] gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4] Length = 368 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPESLSIRGRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+P+ +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185 +KP +GGSS+GI + + LD + + H ++++E + G E+ CGV+ GD Sbjct: 188 VKPARGGSSIGITRV--AEWAALDDAIAHARRHDPKVIVESGIAGREVECGVLEFPDGDV 245 Query: 186 SLDVT-EIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V EI +P+ FY ++ KY +PAK+ + E++ LA A A+ Sbjct: 246 RASVIAEIRMPEGADDDEAFYDFDSKYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M G + L+ +V+ A Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWDAVGVDYGTLVSTLVDTALAR 363 >gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B] gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] Length = 304 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG Q LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM 44385] gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 412 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 61/353 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S A S L+ ++V I + R V+ P Sbjct: 57 VAVVYGGRSSEHSISCVSAGAVISHLDPDRYQVVPIGITRDGRWVVGSSDPKELSIRERQ 116 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F VLHG FGEDG VQ + ++ Sbjct: 117 LPEVKAGTSLSLSLDPQHAGRFVYADGPDVGQVFADVDVIFPVLHGGFGEDGTVQGLFDM 176 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIK 131 +PY +G+LASA SMDK +K++ ++ G+P+ +++ T + ++L+ P +K Sbjct: 177 ASVPYVGAGVLASAASMDKEFTKKLAAAEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVK 236 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV 189 P +GGSS+GI + DQ LD + H ++++E + G E+ CGV+ D +++ Sbjct: 237 PARGGSSIGISKV--DQWDELDDALDLARQHDSKVIVESMIVGTEVECGVLQRPDGTVEA 294 Query: 190 TEIAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + A FY ++ KY T +P D + ++ LA A+ C G+ Sbjct: 295 SLPAQLEDTESGDEGFYGFDTKYLDNVITAQIPPHFDDDTIRHIRELAVETFHALDCEGL 354 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF R EIN PG TP+S++P+M G + +LL +++ A Sbjct: 355 ARIDFFVT--DRGPVLNEINTMPGFTPISMYPQMFGAMGIDYPDLLDLLIQRA 405 >gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37] Length = 345 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A +L+ ++ I + +S L Sbjct: 6 VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ DL VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + V S G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 ++ +P + + + ++LIE+ V G E+ C ++G+ + +V +A+ F + Sbjct: 186 EEELPSAVETARQF--DSKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S NST + PA I + VQ A ++A+GCRG+SR D + Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVDMFL-KEDGTIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAGLPLGAVIDQIVSLA 339 >gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160] gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408] Length = 353 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ + + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 362 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG SSE EVS++S ++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 40 ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ + + + D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137 +MDK +K + GVPV + + R+ + +S +KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194 S+GI + D + L + ++ + D++L+E+ + G E+ V+G+ V+ I Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T + PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] Length = 344 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S + A++ ++V I + ++ LA+++ Sbjct: 5 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 65 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 301 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 339 >gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName: Full=VanC ligase gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S + A++ ++V I + ++ LA+++ Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 297 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P + + ++ Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + IS P +KP GGSS+ +K + + Q+S +++IEQ+V G E+T Sbjct: 126 ADE-ISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKH---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + I P ++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNNDVYSSVWIE-PLNEFYDYESKYS-GKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5] gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5] Length = 351 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 158/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG GE+G +QA Sbjct: 63 EIAKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT L A++MDK +KQ+ G+ + +++ + + P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + L SSS+ + D+++IE+Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVTTESEYEEAL--SSSFRYEDEVVIEEYIKGREFACGIIDGEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY + + V PA I D + L A++A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A +G + +L +++ + R Sbjct: 300 LDSRGN-LYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQKSLEAR 349 >gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S + A++ ++V I + ++ LA+++ Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEKLIALA 338 >gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] Length = 350 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 161/347 (46%), Gaps = 55/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+ER+VSLSSG L++ G V +D Sbjct: 3 IIVLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGL 62 Query: 38 -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG+ GE+G +QA Sbjct: 63 EIAEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 ++L I YT L SAL+MDK +KQ+ GVP + + D ++ +S P V Sbjct: 123 DILGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + + + S+ + D+++IE Y+ G E G++ +L V Sbjct: 183 VKPCSGGSSIGVYIPQTEAEYKTAV--EESFKYEDEIIIEPYIKGREFAVGIIDGKALPV 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PKS+F+ Y KY + + + PA I I K +Q A A+ SR+DFL Sbjct: 241 IEI-IPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ LE+N PGMT S+ P+ A AG S+ +L +++ + Sbjct: 300 LTE-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQKS 345 >gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 348 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---VLAHLKPD----- 52 + +L GG S+EREVS+ S ++ A+ F V + ++ KP Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDRFLVKTYFISQAGDFYKTQEWSQKPAETEKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE+L++PY + IL S+++ Sbjct: 66 MTNQTIVAASQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S GVP + + ++ +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGVPQVAYKVFVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + + ++LIEQ V+ E+ G++G+ + T V + FY Y Sbjct: 186 ESESELREAIQLAL--QYDSRILIEQGVNAREIEVGLLGNTDVTSTLPGEVVKEVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY N T +PA++ ++ +++ A A +A+GC G+SR DF ++ E+ Sbjct: 244 QAKYIDNNITMAIPAELETELANKMRAYAENAFKALGCCGLSRCDFFLT-RDGSIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIEKLVALA 336 >gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] Length = 378 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 11 VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSDNR 70 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 71 PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQGMLE 130 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------ 125 ++ IPY G+LASA MDK +K ++ + G+ P ++V + + D + ++ Sbjct: 131 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 190 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 191 YPLFVKPARAGSSLGISKVDRPEDLAGAIEAARA--VDPKVLVESGIVGREVEVAVLQGR 248 Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234 D +A P +FY YE KY + ++ V PA+I + + A A Sbjct: 249 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIGPEARDLLMDTAARA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF V EIN PG TP S++P M +G + EL+ ++E Sbjct: 309 FEALGCEGLARVDFFLTDAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 367 Query: 295 DASCL 299 A Sbjct: 368 LAVAR 372 >gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405] gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057] Length = 353 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis C231] gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis 1002] gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis I19] Length = 363 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG SSE VS S A S L+ ++V + + R + Sbjct: 16 VAVVYGGQSSEHSVSCVSAGAIMSHLDPQKYEVFPVGITRDGVWTVGESDATKLRTVDRV 75 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + D+ F LHG FGEDG +Q + EL IP Sbjct: 76 MPEVEFVREVKLSVNPRSAGEFRYEDGTLYAQADVIFPALHGRFGEDGTIQGMFELSGIP 135 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ T + ++ P +KP +G Sbjct: 136 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGDETLTESDKQMLGLPVFVKPARG 195 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----- 190 GSS+GI + + D + + H ++++E + G+E+ CGV+ A + Sbjct: 196 GSSIGISRVIEWDDF--DAALTLAREHDTKVIVEAEIKGVEVECGVLERADGSLIASVPA 253 Query: 191 ---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 ++ + FY ++ KY T +PA +Q L+ A QA+ CRG+SR D Sbjct: 254 QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQTIALIQSLSLEAFQALNCRGLSRVD 313 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 F E+N PG TP+S++P++ G + ELL +++ A Sbjct: 314 FFVTDQG--PVLNEVNTMPGFTPISMYPQVFEATGIGYAELLSHLIDQALA 362 >gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum] gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S + A++ ++V I + ++ LA+++ Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] Length = 320 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+L GG S+EREVS+ SG +AL+ F V D + ++ D+A +LH Sbjct: 6 LALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPRLVHDAPNIDVAVVMLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NR 115 G +GEDG +Q +L++L+IPY SG+L SA+SM K+ SKQ+ G+ P +V Sbjct: 66 GEYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVVSPDNRH 125 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P +KP GGSS+G+ ++K + L + + LL+E V G+ Sbjct: 126 EAANLADQVGYPLFVKPCMGGSSIGMSLVKGPADLDKAL--DAGFAEDPVLLLEACVTGV 183 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T V+G+ +L + EI + F+ Y KY + S + PA+I + ++ L+ Sbjct: 184 EITGAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEGAQKAMDLS 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+ C+G SR+D + D + LE N PGMT S+ P+ A AG F L+ Sbjct: 244 KQAHKALFCKGYSRTDMILDK-DGALHVLETNTIPGMTANSLLPKAAKVAGMDFTALMSR 302 Query: 292 MVEDA 296 +V+ A Sbjct: 303 LVDLA 307 >gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150] Length = 353 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18] gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18] gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190] gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399] gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902] Length = 304 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAESCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 304 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY +++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 R Sbjct: 297 KAR 299 >gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] Length = 288 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 114/296 (38%), Positives = 163/296 (55%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL+SGKA +L G+ IDV + ++ + D A+ H Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIENEYDFAYLAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L++L PYT SG AS ++MDK+ +K++ S GV + + Sbjct: 63 GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITKKLAESVGVRIAKNY------DK 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P VIKP GSS+ I + + + G +++IE+ + G ELT Sbjct: 117 VADIDSYPVVIKPALEGSSVEIFFCYNREEAEKAVAELK----GKKIVIEEMITGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ + V I +PK++FY YE KY+ S H PAKI Y E A H +G Sbjct: 173 GVINGEGIGVLRI-IPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVLG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285 >gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297] gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297] Length = 359 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 156/350 (44%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + ++ GG S+E +VSL S K+ A++ ++ I + +L Sbjct: 7 VGIVFGGRSAEHQVSLQSAKSIIDAIDRTRYEPVLIGITEQGQWLLNDATDFLLNATDPK 66 Query: 48 ------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + + D+ F VLHG +GEDG +Q + L + Sbjct: 67 TIELNRQGQPVTLAAGDQRGSVIPTTQSPINAQVDVLFPVLHGPYGEDGSIQGLARLANL 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P SGIL SA+ MDK +K+++ G+ V +V + + + P +K Sbjct: 127 PCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYEVVRNGQLTEALIERIETRLQYPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + +++ + ++ + ++L+E V G E+ C V+G+ + + + Sbjct: 187 PANMGSSIGVSKAENREALITAVADAARF--DPKILVEALVVGREIECAVLGNDTPEASV 244 Query: 192 IAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 ++ FY Y+ KY + + +PA I + + ++ ++ + CRG++R Sbjct: 245 CGEIAANQTHAFYDYDAKYIDADGAVLSIPAAISDEASERIREISKQVFTTLECRGLTRV 304 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +V E+N PG T +S++P++ ++G + +L+ +++ A Sbjct: 305 DVFLTDA-GEVVINEVNTIPGFTKISMYPKLWEHSGLPYPKLIDRLIQLA 353 >gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis substr. CH1] gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 348 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + +S P KP GSS+GI Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L ++ + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 188 QEELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A +A +AIG G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343 >gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ + ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG++ E+L ++ Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337 >gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q ++ +GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG S EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 >gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523] Length = 296 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 160/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+L I +T S + +S ++MDKM SK++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPMAKFLT-AKLF 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568] Length = 304 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 C V+ L I +P ++FY YE KY+ ++ + P + ++ LA QA Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAESCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 348 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 86/329 (26%), Positives = 157/329 (47%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P ++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] Length = 315 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV+ S +V A D+AFNV+HG Sbjct: 17 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPA--GTDVAFNVIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ +KQ VP ++ + Sbjct: 75 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDG---A 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYV+K K GSS+G+ +++ + + +W++G +LL+E +++G ELT G Sbjct: 132 NPTLPLPYVVKAPKEGSSVGVFIVR--EEAKVADTMREAWSYGKELLVEDFINGRELTVG 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+GD +L + EI P DFY+++ KY + H PA I ++ + VQ +A A Sbjct: 190 VLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +AI R D L + + LEIN PGMT VS+ PE AA AG S+ EL ++E Sbjct: 249 ARAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIE 307 Query: 295 DASCLR 300 + R Sbjct: 308 LSLARR 313 >gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002] gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 353 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E +VS+ S A A A +++ +DR+ VL Sbjct: 6 VGLLFGGKSGEHDVSIVSAAAIAKAFAQEDNPDKYELLPFYIDRNGIWHDPEISQQVLTA 65 Query: 49 LK---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 K D F ++HG GEDG +Q +L L+E P+ S +L S Sbjct: 66 GKALPVETVDPASRWQFPPAAPSIDAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135 A MDK+ K V + G+ + V R + S + + P +KP Sbjct: 126 AAGMDKLAMKMVFAQAGLAQVDYVGVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ + +L++E V E+ C V+G+ + + Sbjct: 186 GSSVGISKVRTRDELEKALDLAA--EYDRRLIVEAGVTAREVECAVLGNDQPKASVVGEI 243 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 SDFY YE KY+ S+ +PA+IP I +++Q LA A QA+ CRGI+R DF + Sbjct: 244 RFDSDFYDYETKYTDGKSSMHIPAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEA 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ V EIN PG T +S++P++ +G F +L+ +V+ A Sbjct: 304 TQTVLINEINTLPGFTALSMYPQLWQQSGVPFPQLVDRLVQFA 346 >gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S ++ A+ ++V I + ++ LA+++ Sbjct: 4 IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 348 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---VLAHLKPD----- 52 + +L GG S+EREVS+ S ++ A+ F V + +S + KP Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S GVP + + ++ +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ VD E+ G++G+ + T V + FY Y Sbjct: 186 DSETELREAIQLAL--QYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEVVKEVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA++ D+ +++ A A +A+GC G+SR DF ++ E+ Sbjct: 244 QAKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDFFLTK-DGFIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYPELIERLVILA 336 >gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 388 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRDHYEVLPVGITPEGQWLLVEDDPAALELSDSR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVTITADGLGRGTLTAPLGGGELTVLGPTGPQVLGRVDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125 ++ +PY G+LASA MDK +K ++ + G+ P ++V T ++ ++ Sbjct: 141 MMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHTWKRDPEAILEACRSLT 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLRQAIEAARA--VDPKVLVESGIVGREVEVAVLQGR 258 Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234 D +A P +FY Y+ KY + ++ V PA+I + + A A Sbjct: 259 DDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDAVAMVCPARIGPEARALIMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF V EIN PG TP S++P M +G + L+ ++E Sbjct: 319 FEAVGCEGLARVDFFLTDSGEAV-VNEINTMPGFTPFSMYPYMWQVSGLDYTALVSELIE 377 Query: 295 DASCL 299 A+ Sbjct: 378 LAAAR 382 >gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 384 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 156/359 (43%), Gaps = 67/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S+E +S S A + L+ + V + + R VLA Sbjct: 10 IAVVFGGRSAEHSISCVSAGAVLAGLDPDRYDVVPVGIARDGRWVLAEPAQRLAIADGEL 69 Query: 49 ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+ F VLHG +GEDG +Q +LE+ Sbjct: 70 PEVTGGTAVSLVGDPGGRGLAVLEPAAGVASALTEVDVVFPVLHGAYGEDGTIQGLLEMS 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124 IPY SG+ ASA SMDK +K+++++ G+P +++ + + Sbjct: 130 GIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDDADRERL 189 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG- 183 P +KP + GSS+GI + P + ++S ++++E V G E+ CGV+ Sbjct: 190 GLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAAS--VDPKVIVEAAVPGREVECGVLAR 247 Query: 184 -----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ASL P +++Y + KY +PA + + + VQ A A A+ Sbjct: 248 PDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETARKAFLAL 307 Query: 239 GCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 CRG++R DF + ++ E+N PG TP+S++P M A G F L+ +VE Sbjct: 308 DCRGLARVDFFLGTGPDGADRLVVNEVNTMPGFTPISMYPRMWAATGVDFAALVDRLVE 366 >gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 154/338 (45%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S E +VS+ S K A+ ++ ++ I + RS + Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D F+VLHG GEDG +Q + EL IPY + Sbjct: 66 SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G +++N + + ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + D ++ + ++LIEQ V G+E+ C V+G+ +V +I++ F Sbjct: 186 NEDEL--DAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ ++PA + + ++Q A ++A+GC+G+SR D + ++ Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQE-NGRII 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ + A Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLA 340 >gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 348 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++MD Sbjct: 68 NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S +P + ++R +++ ++S P +KP GSS+GI + Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G S+ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336 >gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 348 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S+EREVS+ S ++ A++ F V + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67 Query: 41 -SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P + ++R +++ +S P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G ++ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLNYAELIEELVRLA 336 >gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus] Length = 345 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E VS+ S + A +L+ ++ I + + L Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 +Q + L + + ++LIE+ V G E+ C +MG+ + +V +A+ F Sbjct: 186 TEQELKAALETAREF--DSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST + PA IP + VQ A ++A+GCRGI+R D V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340 >gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 331 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 18/312 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V+++ S+P ++ + + L+E+YV Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAMV--GCFAYDQTALVERYV 200 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ V Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTARVT 259 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F + Sbjct: 260 EVALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRV 318 Query: 289 LLWMVEDASCLR 300 L +V A+ R Sbjct: 319 LGTLVTRAAARR 330 >gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] Length = 350 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG SSE EVS S + A A++ + ++ + + + + Sbjct: 6 LVVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRD 65 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + D+ F VLHG +GEDG +Q + E+ +IPY G Sbjct: 66 GKVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCG 125 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA SMDK +K +V + GV + V + + P +KP K Sbjct: 126 VLASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKA 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEI 192 GSS G+ QS+ L ++ + +++L+E+ + G EL CGV+G + Sbjct: 186 GSSKGVNKAVDRQSLKSALEEAVKF--DNKILVEETIVGRELECGVLGYKDNTQASGVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY ++ KY++ S V+ A IP +I E++ A +A+ G+SR DF + Sbjct: 244 ILAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLEK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV + EIN PG T +S++P + GY +L+ ++E A Sbjct: 304 GTNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIEMA 347 >gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] Length = 313 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 7/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG ++ER VSL SG+A +AL +D + + F LHG Sbjct: 19 VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GE G VQ L+ +++ YT SG++ASA+++DK+R K + +P + +N Sbjct: 79 GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPTPSFCELSINSHWD 138 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D ++KP GSS+G+ + + +S + ++ EQ+V G E T Sbjct: 139 DIIRQWGK-VIVKPASEGSSIGMAIATTGAELKGAYEIASQYQ--GAVMAEQWVQGAEFT 195 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G +L V + FY YE KY S ++ ++ P + +E++++A A ++ Sbjct: 196 VAILGKETLPVIRLETDH-GFYDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSV 254 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GC G R DF+ D F LE+N PGMT S+ P A A +F EL+ ++ Sbjct: 255 GCEGWGRVDFMQDESDN-FFLLEVNTVPGMTDHSLVPMAAKEASVNFEELVAEIL 308 >gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 304 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ G+ I + Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QVR 299 >gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] Length = 350 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP ++ + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135 SA+SMDK+ K + G+ P + +N ++ + + P +KP Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++ +L++EQ V EL C V+G L + + Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQL--DPRLVVEQGVHARELECAVLGGHQLRSSVVGEV 245 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDT 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 306 KHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] Length = 348 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+D+ V + + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +KQV+++ GVP + S +S P +KP GSS+GI Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 246 KYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 371 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 84/347 (24%), Positives = 162/347 (46%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE ++SL S K+ A++ +++ I +D++ L Sbjct: 14 VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F +LHG++GEDG +Q +L L+ P Sbjct: 74 LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKP 132 + +L SA+SMDK SK+++S G+ + + + + P +KP Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYEKVKENLGTPVFVKP 193 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + + + + ++ + ++++IE+ + G E+ C V+G+ + Sbjct: 194 ANQGSSVGISKVYEKKKFYMAVDE--AFRYDNKIVIEEEIKGREIECAVLGNEDPIASLP 251 Query: 193 AVP--KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 FYSY+ KY +S +PA++ D ++V++ A A +A+ C G++R DF Sbjct: 252 GEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNGVARVDFF 311 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F EIN PG T +S++P++ +G +++L+ M+ A Sbjct: 312 LTKEGN-LFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMIALA 357 >gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] Length = 348 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 86/329 (26%), Positives = 158/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 EAELHAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P ++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 358 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL + I + R +L+ Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMRALAPEKYDAVPIFISREGQWLLSSFVDGALATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG +GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGRGRMMAIPTGGTPHDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ V S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTVRADAAPSLATLESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ DA+ D EI Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDHTLLAEEFVAGREIEFSVLEDAAGDLFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 ++ FY+Y+ KY + +PA++P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG T +S++ + A +G S+ E++ +V+ Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMAR 353 >gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus] Length = 343 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S + A+ +++ ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKSGVWKMCEKPCAEWENSNCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ +H GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ + ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + D S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 186 VADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+ +PA + + +Q A ++A+GCRG+SR D + ++ Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGITLPELIDRLI 337 >gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] Length = 373 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 66/363 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S ++ +A++ + V I + ++ VL P Sbjct: 10 VAVVFGGRSSEHAISCATAAGVLAAIDRERYDVVPIGISKAGQWVLMPDDPSVLAIQGKK 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q +LE Sbjct: 70 LPEVTNDAGREVVIAPSPDQHDILVLDAGQTPQALTSVDVVLPLLHGPFGEDGTLQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQ----HLIS 125 L ++ Y SG+ ASA+ MDK K V + G+PV P +++ R D+ + Sbjct: 130 LADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYVVITDKQWRRDKDAAMASLTPLR 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS+GI + + + + +++IE + G E+ CGV+ Sbjct: 190 YPVFVKPARAGSSVGISKVDSRDQLEAAI--ELARESDPKVVIEAGIVGREVECGVLEGH 247 Query: 186 SLDVTE-------IAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237 D+ + + FY +E KY + + PA + + ++ L+ A A Sbjct: 248 GSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRLACPADVSAEDTARIKELSIKAFDA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G++R D+ + +F EIN PG TPVS+FP + +G + +L+ ++E A Sbjct: 308 AGCEGLARVDWFYTA-EGTLFLNEINTLPGFTPVSMFPAVWRESGLDYTDLITDLIELAR 366 Query: 298 CLR 300 + Sbjct: 367 ERK 369 >gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 390 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 66/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + VL GG S E +S ++ AL+ + V + + + VLA PD Sbjct: 27 VMVLFGGRSGEHAISCATAGGVLRALDRDRYDVVAVGITPTGRWVLAEDDPDRWAIRDGR 86 Query: 53 --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74 + F +LHG FGEDG +Q +LEL Sbjct: 87 LPQVEDTAAHVLLPQATDDRDVQVLEPGTLPRTLGAVDVVFPLLHGPFGEDGTLQGMLEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 ++ Y +G+LASA+ MDK K V++ G+PV P ++ ++ + Sbjct: 147 ADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFTVILPGELERDPDEVARRVEKLGL 206 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSSLGI + +P L + + H ++++E V G E+ CGV+G Sbjct: 207 PLFVKPARAGSSLGITRVDDLADLPAALDAARA--HDPKVVVEAAVVGREIECGVLGGRD 264 Query: 187 LD------VTEIAV--PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 EI V P+ FY +E KY T PA +P D+ +V+ +A +A Sbjct: 265 GQRARASLPGEIVVTDPRHTFYDFEAKYLDEAGVTLACPADLPADVVAQVRDVAVRTFEA 324 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 IGC GI+R D P +V EIN PG TP S++P M G + +L+ +V+ A Sbjct: 325 IGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWEATGLPYPQLVDELVQLAL 383 Query: 298 CL 299 Sbjct: 384 AR 385 >gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] Length = 361 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D+ + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I K V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 318 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 162/311 (52%), Gaps = 20/311 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ER+VSL++G+ ALE G +V +DV+ + L L+P F LHG Sbjct: 4 LAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+LE L IPYT SG L+S MDK +K+ +++ G+P R M+ Sbjct: 64 PGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNE 123 Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP + GSS G+ +++ + + + + ++ + ++L+E+ Sbjct: 124 MGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAVYE--AFGYDAKILLER 181 Query: 171 YVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +V+G E++ ++ +L + EI P+ Y+++ KY+ + +PA++P Sbjct: 182 WVEGREVSVPILEPAGEAPRALGLVEIR-PREGAYNFQAKYTPGMTDFAIPAELPPGTAS 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ A ++ +GC G +R D + L++ PG T S FP A AG SF Sbjct: 241 RLEETALAVYRTLGCSGFARVDTIV--EGETPQVLDVKTIPGFTETSTFPLAAEAAGLSF 298 Query: 286 RELLLWMVEDA 296 L+ +++ A Sbjct: 299 ERLVEIILDSA 309 >gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 158/337 (46%), Gaps = 46/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S ER+VSL SG A++L +G V+ DV D + Sbjct: 7 ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66 Query: 46 LAHLKPD--------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + PD + F LHG GEDG +QA L + IPY Sbjct: 67 VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T S A ++MDK SK + + G+P L+ + DS I P V+KP GSS+ Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKG--DSTDGIPLPCVVKPCSCGSSV 184 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G+ ++ +++ L +++ + +++L E + G E + GV+ +L EI PK F Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAIEIR-PKDGF 241 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY S + + PA +P + LA H+A+G SR DF+ + + K Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N PGMTP+S+ P+ AA AG + L L + + A Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 300 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 7/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61 ++ GG S ER+VSL+ AL+ G +V +D+ ++ + D A LHG Sbjct: 5 LIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG +Q +LE + +PY SG+ S L+++K SKQ ++ G+ L F Sbjct: 65 PGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLY--FPQGRL 122 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H + PP + KP +GGSSL + + + + L Q + ++L+E+ ++G E++C V Sbjct: 123 HHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQV---DSEHEILVEELINGHEVSCAV 179 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + L I K DF+ Y KY + + PA I + + +Q ++ AH+ +G R Sbjct: 180 LDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRILGLR 239 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SRSDF+ D ++ LE N PGMT S+ P+ A AG F EL+ ++ A Sbjct: 240 HYSRSDFMLDQQDN-IYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLA 293 >gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 367 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 52/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER++S+ + +L G+ + +DV Sbjct: 27 IVVLAGGTSTERDISILTSTKVCESLRRNGYNANIVDVFFGIDSENVDNFFNNDNDLEKL 86 Query: 39 -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74 V L K D+ F LHG+ GEDG +QA EL Sbjct: 87 CKYLKNQTPDVEKELEARKALGKGFFGDNVLELCQKADIVFMGLHGSNGEDGKIQAAFEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + I YT + ++SA+SM K +K+V+ G+P+ I +++ + P V+KP Sbjct: 147 MGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPKGIALHKGH--KVEYVPFPCVVKPCC 204 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ ++ L + ++++ D +L+E+++ G E + GV+ +L V EI Sbjct: 205 GGSSVGVSIVNSEEEFKRAL--TDAFSYEDNILVEEFIKGREFSVGVLNGKALPVIEIE- 261 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P FY Y+ KY + + PA +P +I +++QR A A + G +R D L + Sbjct: 262 PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQRWAEKACETAGVTTYARVDELLNE-D 320 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LEIN PGMT S+ P+ AA G S+ EL ++E Sbjct: 321 GDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELTKKIIE 360 >gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] Length = 298 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 158/294 (53%), Gaps = 16/294 (5%) Query: 15 SLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 SL+S A ALE AG +V ID++ + + LA + FNV HG FGEDG++QA LE Sbjct: 2 SLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACLE 61 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQH 122 +PYT SG+LASAL+MDK RSK++ + G+P + R + D H Sbjct: 62 ASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADELH 121 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSSLGI ++ + + + ++ ++L+E+ VDG+E T G++ Sbjct: 122 IARWPVFVKPNRAGSSLGISRVENAAGLAEAMAK--AFAVDSEILVEEAVDGLEATVGIV 179 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +L I P FY YE KY + ++ ++LP+ +P + +Q LA A + +G R Sbjct: 180 AGRTLPPIVIR-PHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGRD 238 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D + LE+N PGMT S+ P A G++ +L L +V A Sbjct: 239 WGRVDFLVDAEGG-IHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291 >gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] Length = 361 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 304 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGKQLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 348 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 ++ GG S+EREVS+ S ++ A+ F V Sbjct: 8 LIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKLMT 67 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +DV + V + + + F VLHG GEDG +Q LE+L +PY IL+S+++MD Sbjct: 68 NATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ S G+P P + V + + ++ P KP GSS+GI + Sbjct: 128 KITTKRILESAGIPQVPYVAVIEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L ++ + ++LIEQ V+ E+ G++G+ + T V FY YE Sbjct: 188 QEELRAALDL--AFKYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +P KI + ++ A A +A+G +G++R DF + +F E+N Sbjct: 246 KYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTE-EGDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G + +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLPYSDLIEKLVNLAEEAFAQR 343 >gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] Length = 313 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV +++ T Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + VIKP K GSSLG+ +K + + S G +L E+YV G ELT Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G + + EI P D Y +E KY S + +V PA++P ++ ++++ + A Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G SR D + LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 249 ALAVGADAWSRIDVILR-DDGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAA 307 Query: 295 DAS 297 AS Sbjct: 308 RAS 310 >gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 331 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 18/312 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V+++ S+P ++ + + L+E+YV Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAMV--GCFAYDQTALVERYV 200 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ V Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTARVT 259 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F + Sbjct: 260 EVALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRV 318 Query: 289 LLWMVEDASCLR 300 L +V A+ R Sbjct: 319 LGTLVTRAAARR 330 >gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 280 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 159/281 (56%), Gaps = 9/281 (3%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A AL G+ V +IDV + V L K D+A+ LHG +GEDG +Q +LE L IPYT Sbjct: 1 MAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTG 60 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGS 137 SG+LASA+ MDK+ +K + ++ G+P P T + S P V+KP + GS Sbjct: 61 SGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGS 120 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+G+ V K ++ + ++ + LL+EQ++ G E+ V+ D +L V E+ V + Sbjct: 121 SVGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAR- 177 Query: 198 DFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY + KY+S + + ++ PA +P D Y+ V + AH+A+GC+G SRSD + Sbjct: 178 EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGD 236 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 VF LE N PGMT S+ P++AA G F L +++ AS Sbjct: 237 VFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277 >gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] Length = 304 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+ Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDGKHLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] Length = 313 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV +++ T Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + VIKP K GSSLG+ +K + + S G +L E+YV G ELT Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189 Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+ G + + EI P D Y +E KY S + +V PA++P ++ ++++ + A Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G SR D + LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 249 ALAVGADAWSRIDVILRG-DGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAA 307 Query: 295 DAS 297 AS Sbjct: 308 RAS 310 >gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 346 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 145/339 (42%), Gaps = 45/339 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 V+ GG S E +S+ S + A L+ A ++ I + S L Sbjct: 7 GVIFGGCSEEHPISVKSAQEVARHLDPARYEPFYIGITTSGAWKLCDGPDADWENGRCRP 66 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+ VLHG GEDG +Q +LEL IPY + + Sbjct: 67 ATLSPDRSARGLLVLEYGRYETISLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQS 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V + G+ V + P +KP + GSS G+ + Sbjct: 127 SALCMDKSLTYTVARAAGIATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSG 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 +P L + + ++L+E+ V G E+ C ++G+ + +V +IA+ F + Sbjct: 187 RDELPGALDV--ARRYDSKVLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIH 244 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S NS+ +PA I + VQ A A++A+GCRG+SR D V Sbjct: 245 QEDEPERGSDNSSVTVPAAISQEARALVQETAKAAYRALGCRGLSRVDMFLTA-DGDVVL 303 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PGMT S +P M A AG F E++ +V A Sbjct: 304 NEVNTLPGMTSYSRYPRMMAAAGLPFAEVIDRIVALALT 342 >gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium] Length = 343 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 151/336 (44%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ + ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 186 RAEELQAAVTEAG--KYDCKILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] Length = 351 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 47/340 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S E EVSL+S ++ +A A F V+ + + R L+ Sbjct: 17 LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75 Query: 46 --------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 L D+ F +LHG FGEDG VQ +L+LL +P+ S +L SA+ M Sbjct: 76 PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIV 143 DK K V ++ G+P P L+ R P +KP GSS+GI Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD--FY 200 + + L ++ + ++L+E+ + EL GV+G+ + + + + + FY Sbjct: 196 ADDPEGLREALETAA--RYDRRVLVERGLARARELEVGVLGNDAPRASVVGEIRYESLFY 253 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY+ + ++PA IP ++ Q LA A +A+ G++R DF +++ Sbjct: 254 DYSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELYLN 311 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG T S+FP++ +G + L+ ++ A R Sbjct: 312 EINTMPGFTRTSMFPKLWEASGVPYDALITQLIALALEAR 351 >gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] Length = 352 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + V+ GG SSE EVS S + A A++ + ++ I + + + A Sbjct: 6 LVVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYD 65 Query: 48 ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG +GEDG +Q + E+ +IPY G Sbjct: 66 SQVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCG 125 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 + ASA +MDK +K + V + V D + ++ P +KP Sbjct: 126 VFASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSA 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191 GSS G+ + L ++ NH ++L+E+ + G EL CGV+G + V E Sbjct: 186 GSSKGVTKAHDRAELEAGLHEAL--NHDSKILVEETIIGRELECGVLGYGNHTKASGVGE 243 Query: 192 I-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I A +DFY ++ KY++ +S ++ A IP + E++ A AI G++R DF Sbjct: 244 ILAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFL 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + +V + E+N PG T +S++P + GY + L+ ++E A Sbjct: 304 EKDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIEMA 349 >gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 351 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHL------- 49 + ++ GG+S E EVS+ S + AL+ F V I +D+ + + Sbjct: 8 VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K + F VLHG GEDG +Q +L PY SG Sbjct: 68 DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132 +L SAL MDK+ K S+ G+P ++ + + + P IKP Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L ++ ++++E+ + EL C V+G + + + Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCV 245 Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + SD+Y Y+ KYS ++ ++PA IP I KEVQ L+ LA +AI GI+R DF + Sbjct: 246 GEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ EIN PG T S++P + +G +L+ ++E A Sbjct: 306 DEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351 >gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 145/335 (43%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202 + D S+ + ++LIEQ V G E+ C V+G+ A+L V E+ + + + Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 E + S N+ +PA + + +Q ++ +GCRG++R D R + Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDRGR-IV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG S EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 >gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] Length = 348 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52 + +L GG S+EREVS+ S ++ A+ F V + + KPD Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQELSQKPDDNEKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V++S G+P + ++ ++ + P +KP GSS+GI Sbjct: 126 MDKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L + + ++LIEQ V E+ G++G+ S+ T V FY Y Sbjct: 186 ET--EMELKEAIGLALKYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA+I +I KE++ A A +A+G G+SR DF ++ E+ Sbjct: 244 QAKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G + +L+ +V+ A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLVYSDLIEELVKLA 336 >gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1] Length = 356 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 53/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + + L+ F+V + + R V P Sbjct: 8 VAVVFGGRSSEHAISCVSAGSVLTHLDPERFEVVPVGISRDGAWVTGPSDPRELGISGRE 67 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F +LHG FGEDG +Q +LE+ +P Sbjct: 68 LPEVDGTSDALVLPGEPGRGLIRLDAGEALSQVDVVFPILHGAFGEDGTIQGLLEMAGLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKG 135 Y +G+LASA+ MDK +K+++ + G+ V I++ T + + P +KP + Sbjct: 128 YVGAGVLASAVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193 GSS+G+ + LD + + H ++L+E V G E+ C V+ D S+ + A Sbjct: 188 GSSMGVTRVTDPA--GLDAAIAEAREHDPKVLVESAVPGREVECAVLEFPDGSVRASLPA 245 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + +FY +E KY S +PAK+ +I V+ A A +A+ +G++R DF Sbjct: 246 ELRYNGEFYDFESKYL-DVSELEIPAKLDDEITDSVRWKAVTAFRALDVQGLARVDFFVT 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E+N PG TP S FP+M A G + ELL MVE A Sbjct: 305 -DDGHITVNEVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETALAR 351 >gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] Length = 303 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGG S EREVS+ SG ALE+ G+ V +D + D+ +N LHG Sbjct: 5 VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDPQEP-RWQEKLIGVDMVYNTLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG VQ L++ IPYT +G+L SA+SMDK+ +K++ +CG+P ++V Sbjct: 64 PVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIPTPAYLVVTADMAHG 123 Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 M ++ S P V+K + GSS+G+ ++ L + Q+++E+Y+ G Sbjct: 124 AVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQL--DSQVMVEEYIQG 181 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT G + D +L + I V + FY Y KY+ + + +P K+ V + Sbjct: 182 YELTSGFLDDLALPLVGI-VAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRVVDYSRRL 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G RG R D++ ++LE+N PGMT S+ P+ A AG SF +++ ++E Sbjct: 241 CRALGLRGAFRVDYML--KDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFADVVAKVLE 298 >gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius] gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius] Length = 343 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 150/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S E +VS+ S K A+ + ++ I + RS + Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + D S+ + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 186 GADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+ +PA + + ++ A ++A+GCRG++R D + ++ Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLI 337 >gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 348 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + ++ + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 EGEAALRTAI--DFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I DI +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYTDLVEKLVELA 336 >gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 359 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E E+S S A L + +V I +D+S Sbjct: 11 VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70 Query: 52 ---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D+ ++VLHG +GEDG +Q + E+ ++PY + ASA++MDK+ + Sbjct: 71 NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130 Query: 97 KQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K V G+ L+ ++ + P +KP GSS+GI ++ Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKY 206 + + + +++ +L+IE+ + G E+ V G+ + + P+++FY + KY Sbjct: 191 KLKKAIEDAFQYDY--RLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYDVDAKY 248 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S ++ ++PA I + K +Q A +A +AI C+GI R D S ++F E+N Sbjct: 249 HSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNTM 308 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T +S++P++ +G S +ELL ++ Sbjct: 309 PGFTEISMYPKLWEVSGISNKELLERII 336 >gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 368 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 166/340 (48%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E E+SL S A ++ F+ + +D+ L Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 LK D+ F V+HG GEDG +Q +L ++ +P+ S +L Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ---HLISPPYVIKPLKGGSSL 139 +S++ MDK SK ++ G+ V P V ++ +D + P +KP GSS+ Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196 G+ + K + L L+++ S+ +++LIE + G EL C V+G+ + ++ E+ + Sbjct: 186 GVSKVTKCKDFNLALIKAFSF--SNKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++FY+Y KY + ++PA I I +++ +A A Q + C G++R D + L K Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLN-LDNK 302 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E+N PG T S++P++ +G + +EL+ +VE A Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208] Length = 370 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)] gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName: Full=Vancomycin resistance-like protein gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWENGDCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG Q +LEL IPY + Sbjct: 66 PVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + S+ + ++LIE V G E+ C ++G+ +V IA+ F Sbjct: 186 RPEDLATAV--ESARRYDTKVLIEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRI 243 Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NST V+PA IP + VQ A ++A+GCRG+SR D +V Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PGMT S +P M A AG E++ + A + Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344 >gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161] gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] Length = 370 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] Length = 361 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] Length = 361 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] Length = 356 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS S A S L+ +++ I + + + P Sbjct: 10 IAIIYGGRSSEHSVSCISAGAIMSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGA 69 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG +GEDG +Q + EL +P Sbjct: 70 MPTVTLTKEVSLAADPARRGQFRFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVP 129 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ +Q L+ P +KP +G Sbjct: 130 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARG 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193 GSS+GI + + + + D + + ++++E + G E+ CGV+ V Sbjct: 190 GSSIGISRVTRWEDM--DAALREARQYDTKVIVESEIIGDEVECGVLEYPDGTVVASVPA 247 Query: 194 ------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V FY ++ KY + + ++PA + + +Q LA A QA+ C G++R D Sbjct: 248 QLVNTSVGHEGFYGFDAKYVDGDVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVD 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 F E+N PG TP+S++P++ A +G + ELL ++ A Sbjct: 308 FFVTQAG--PVLNEVNTMPGFTPISMYPQVFAASGVPYAELLDTLIARALA 356 >gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99] Length = 370 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDSIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] Length = 374 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 158/360 (43%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + SA++ + + V I + + L +L+ Sbjct: 10 VALLCGGRSSEHPISLITAVGVLSAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F ++HG FGEDG +Q +LE Sbjct: 70 AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 L E+PY G+ ASA+ MDK K S G+ V P +V + + Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTDRQWTHEREESLKRITALG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS GI + K + + + + H ++++E + G E+ CGV+ Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAI--EEARRHDAKIIVEAGIVGREIECGVLDGH 247 Query: 186 SLD------VTEIAVPKSD--FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236 D EI V D FY ++ KY S +S PA +P D+ + ++ LA A Sbjct: 248 HGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR+DF + P ++ E+N PG TP+S++ M G S+ EL+ ++ A Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366 >gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 348 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65 Query: 46 --------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F +LHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + ++ +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + + ++LIEQ V E+ G++G+ + T V DFY Y Sbjct: 186 QTKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA+I D +++ A A +A+G G+SR DF +++ E+ Sbjct: 244 KAKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336 >gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 348 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E +S+ S + A L+ ++ I + +S L Sbjct: 6 VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + VV + G+ +V + P V+KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVVRNAGIATPNFWIVTADEDIDADRLPYPVVVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ + ++LIE+ V G E+ C ++G+ +V +I + F Sbjct: 186 RKEELLSAV--ETARQYDSKVLIEEAVVGSEVGCAILGNDLDVIVGEVDQIRLSHGFFRI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NST ++PA I + VQ+ A ++ +GCRG+SR D KV Sbjct: 244 HQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVDMFL-KEDGKVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S +P M A AG F E++ MV A Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMVSFA 340 >gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8] gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8] gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] Length = 303 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + + + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKT 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S + P V+KP + GSS+G+ V + D+ L + +++++Y+ G E+T Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFVCESDEEFQHALKEDLP--RYGSVIVQKYIPGREMTV 177 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ G L V E+ PK FY Y KY+ + +LPA + + V+ +A A Sbjct: 178 SILETEKGFEILPVLELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKEMALKAF 236 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D +F + ++LEIN PG+T S P A G F EL+ +++ Sbjct: 237 VEAGCRGFGRVDGIF--SDGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294 Query: 296 A 296 A Sbjct: 295 A 295 >gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] Length = 348 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+L+MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPS-ILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + + +++ ++ P +KP GSS+GI + Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ TE V FY Y+ Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P ++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFL-AEDGTIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYTDLIKELV 333 >gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG 18311] gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 348 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A++ F+V + +S + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP + + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 370 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKELEDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354 >gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] Length = 315 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 8/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL SG AL G + ID D L D AF LHG Sbjct: 17 VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLGALGE--FDRAFIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE++ +PYT +G+L SAL MDK+R+K V + G+P + ++ Sbjct: 75 RGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPTPAFLRLDSEAALD 134 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSSLG+ + ++ ++ + ++ E+++DG E T Sbjct: 135 RVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEAWRKAC--RYDREVFAERWIDGQEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ +L V I FY ++ KY + + P + + LA A +A+ Sbjct: 193 VSLLGEQALPVIRIE-SAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAAAAFEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R D L + LE+N PGMT S+ P A AG EL+ ++ Sbjct: 252 GGSGWGRVD-LLRDAEGVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDELVWRIL 305 >gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] Length = 304 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 179/307 (58%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG Sbjct: 5 ILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N Sbjct: 65 QFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKL 124 Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ P V+KP+ GSS+ + + K + + +++LIE+++ G Sbjct: 125 NIIKLIEKILKFPVVVKPINEGSSVHVYICDKTNI----IKNLKALKSYNEILIEEFIPG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFL 233 E+ +M + SL E+ PK FY YE KY+ S + H++P + + ++ +A Sbjct: 181 REIQVAIMNNKSLGAIELE-PKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARA 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+ IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W++ Sbjct: 240 AHKIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWIL 297 Query: 294 EDASCLR 300 +DAS R Sbjct: 298 KDASINR 304 >gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314] gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 361 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S+E VS S A + L+ ++V + + V+ P Sbjct: 11 VAVLYGGRSAEHSVSCVSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q + L +IP Sbjct: 71 MPEVQRREEIRPSLDPAHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135 G+L+SA MDK +K+++++ G+P+ +++ T + L+ P +KP +G Sbjct: 131 VVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDASLDV 189 GSS+GI + + + +P + + H +++++E + G E+ CGV+ ASL Sbjct: 191 GSSIGISKVSRWEDLPAAVDL--ARQHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPA 248 Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + FY ++ KY T +PA + +I + VQ LA QA+ C G++R D Sbjct: 249 MLRGTEDGEGGFYDFDTKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M A +G + ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 355 >gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902] gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902] Length = 350 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP + + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135 SA+SMDK+ K + G+ P + +N + + + P +KP Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ +L++EQ VD EL C V+G L + + Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQL--DPRLVVEQGVDARELECAVLGRHQLRSSVVGEV 245 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNT 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 306 SHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG] gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF] Length = 389 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 158/363 (43%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A A++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAITDRA 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ R Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + LD + + H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFD--GLDEAIAEARRHDPKFLIESLVQGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V +Y +E KY +++ ++PA + + EVQRLA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P+M +G + EL+ ++ Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378 Query: 294 EDA 296 + A Sbjct: 379 QAA 381 >gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1] gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1] Length = 303 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + I + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S + P V+KP + GSS+G+ + + D+ L + +++++Y+ G E+T Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP--RYGSVIVQKYIPGREMTV 177 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ G L + E+ PK FY Y KY+ + +LPA + + V+ A A Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAF 236 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D +F + + ++LEIN PG+T S P A G F EL+ +++ Sbjct: 237 VEAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294 Query: 296 A 296 A Sbjct: 295 A 295 >gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 358 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL + I + R +L+ + Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALAPEKYDAVPIFISREGQWLLSSIVDGALATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG +GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGRGRMMAIPAGGTPYDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIRADAAPSLATLESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ +A+ + EI Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDHTLLAEEFVAGREIEFSVLENAAGELFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FY+Y+ KY + +PA++P D+ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYNYDAKYIDENGAALKVPAELPPDVEATMRDMAAKAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG T +S++ + A +G S+ E++ +V+ Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMAR 353 >gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRS------------ 41 + VL GG S+ER VS++SG AL G + +D+ DR Sbjct: 3 IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62 Query: 42 ------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 + +K D+ F LHG GEDG VQA +L+ I Sbjct: 63 SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKG 135 YT +G L+SAL+MDK +KQ+ VP + + + M + + P V+K G Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ L ++++ +++++E+Y+ G E + V+ + + EIA P Sbjct: 183 GSSVGVYIVNDQAEYEQALKD--AYSYENEVVVEEYIKGREFSVAVVDGKAYPIIEIA-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY Y+ KY + ++ PA+I ++ +++Q A +A+ G R DF+ + Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMM-KENG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + L ++E Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337 >gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] Length = 298 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GGISSERE+SL SGKA L+ ++V +D + D+A LHG Sbjct: 3 VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG+VQ+ILE I Y L S + MDK +K + + V Sbjct: 63 KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P IKP GGSS+ IK + + + + + + +LIE+YV G+E Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAVREGL--KYDEIVLIEKYVKGVEY 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I ++F+ +E KYS+ N ++ ++ K+++ + + Sbjct: 181 TSFILNGQVFPTIRI-TSDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D++ + V+ LE+N PGMT S+ P+ A G S++ LL ++E + Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIESS 297 >gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4] gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4] Length = 365 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 157/356 (44%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + S L+ F+V + V S G VL P Sbjct: 8 VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F VLHG FGEDG +Q +LEL Sbjct: 68 LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131 ++PY G+ ASA +MDK +K+++++ G+PV + R + + P +K Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DA 185 P + GSS+GI + LD + ++L+E V G E+ CGV+ +A Sbjct: 188 PSRAGSSVGISRV--ADWADLDAAIELARRTDPKVLVEAAVRGREVECGVLEFPDGRVEA 245 Query: 186 SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 SL + + + +Y +E KY ++ +PAK+ + ++ +A A +A+ C+G+ Sbjct: 246 SLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF + E+N PG T S +P+M G + LL +++ A Sbjct: 306 ARVDFFVTE-EGDLVINEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTALAR 360 >gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50 +AVL GG S E VSL+S + A++ ++V I + ++ LA+++ Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140 +AL M+K Q+ + G+ P++L++R+ D + P IKP + GSS G Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + ++ L ++++ +G +LI++ + GIE+ CG++G+ L + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVICMDKALAYTVVKNAGITVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 K + + + + + ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 186 KAEELQAAI--EEARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338 >gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] Length = 351 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGL 62 Query: 41 SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + ++ +PDLA F LHG GE+G +QA Sbjct: 63 EIAKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT L A++MDK +KQ+ GV + + + D +S P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ ++ L S+ + +++++E Y+ G E CGV+ +L Sbjct: 183 VKPCSGGSSIGVYIVNTEEEYRQALKN--SFRYENEVVVETYIKGREFACGVIDGKALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ ++ Y KY + + V PA I +I + ++ L A QA+ SR+DF+ Sbjct: 241 IEI-IPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFI 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDA-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQKSMEAR 349 >gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium] Length = 343 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 150/336 (44%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + P +KP + GSS G+ + Sbjct: 126 SSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDLVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 K + + + + + ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 186 KAEELQAAI--REARKYDSKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ + +++ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338 >gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] Length = 346 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGPDWENGDCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG Q +LEL IPY + Sbjct: 66 PVVLSPDRSVHGLLVLEQGRYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + S+ + ++LIE V G E+ C ++G+ +V IA+ F Sbjct: 186 RPEDLATAV--ESARRYDTKVLIEAAVVGSEVGCAILGNDLDLIVGEVDRIALSHGFFRI 243 Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NST V+PA IP + VQ A ++A+GCRG+SR D +V Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PGMT S +P M A AG E++ + A + Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344 >gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b str. F2365] gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459] gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175] gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816] gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220] gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A] Length = 370 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125 Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ +I + P V+K GSS+G+ +++++ + + + + + L++EQ++ Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAV--TEALKYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTATSLVPKAANEMGIDFPTLCEKI 301 Query: 293 VEDAS 297 + AS Sbjct: 302 LLTAS 306 >gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 348 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65 Query: 46 --------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L +PY + IL+S+++ Sbjct: 66 MTNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + ++ +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + + ++LIEQ V E+ G++G+ + T V +FY Y Sbjct: 186 QTKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVEFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA+I D +++ A A +A+G G+SR DF +++ E+ Sbjct: 244 KAKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336 >gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp. novicida U112] gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112] gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1] Length = 296 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 377 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 66/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE +S + A++ + V + + S VL PD Sbjct: 14 VAVVFGGRSSEHAISCITAANVLQAIDRDKYDVVPVGITTSGHWVLESADPDRLSITDGK 73 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F +LHG +GEDG +Q +LE+ +I Sbjct: 74 LPEVDVTAAPVLFGADRELVVSEPDQVPSTLGEVDVVFPLLHGPWGEDGTLQGLLEMSDI 133 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYV 129 Y SG+LASA+ MDK K V ++ G+ V P +++ + P Sbjct: 134 RYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYVVIRDRDWTRDPQACRTAVDQLGYPVF 193 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188 +KP +GGSSLGI + + + ++ + H ++++E V E+ GV+G + Sbjct: 194 VKPARGGSSLGISKVTSLDELDAAIAEARA--HDPKVIVEASVKNPREIEVGVLGGLNGG 251 Query: 189 VTEIAV--------PKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237 + +++V DFY +E KY + +PA +P I E++ A A A Sbjct: 252 LPQVSVCGEVAVSGGGHDFYDFETKYLPEGEQYTALSVPADLPEQIAAEIRAKALTAFDA 311 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 I G++R DF D +V EIN PG TP S+FP + A +G + L+ ++ A Sbjct: 312 IEGEGLARVDFFVDE-DGRVLINEINTMPGFTPTSMFPRLWAASGMDYPSLVDHLLTLAQ 370 Query: 298 CL 299 Sbjct: 371 TR 372 >gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis] Length = 342 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ + F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 388 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + VL P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGRWVLVEDDPAALELSDSR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVQITTDGLGQGALSAPLGGGELTVLGPTGPRVLGQIDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125 ++ + Y G+LASA MDK +K ++ + G+ P ++V D+ +S Sbjct: 141 MMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEVILDACRSLS 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI +++ + +P + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVERPEDLPGAIEAARA--IDPKVLVESGIVGREVEVAVLEGR 258 Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234 D +A P +FY +E KY + ++ V PA+I + + A A Sbjct: 259 GDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVAMVCPARIGPEERALIMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF V EIN PG TP S++P M +G + +L+ ++E Sbjct: 319 FEAVGCEGLARVDFFLTEAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTDLVSELIE 377 Query: 295 DA 296 A Sbjct: 378 LA 379 >gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2] gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1] gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3] gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08] Length = 365 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/355 (25%), Positives = 148/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG+SSE +S S +A++ F VS + + V + Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDTERFDVSGVGISPEGVWVRYEVDEIFALPSTGQ 65 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVSDHPLVSVKQMPGGTCIVDTEGNADVVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K +++ GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILAEAGVLVGPYVVVRDHEWREDRDAILKAAAHLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + ++ H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTNPDGLEAAI--EAAREHDSKVLIEQGIQGREIECSVLDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + P FY +E KY S ++ A + + VQ++A A + +GC Sbjct: 244 RASAPGEIVLHDPDGFYDFEAKYLSGGQKASVHARANLDDETRIRVQKVATKAFRVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353] Length = 353 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35 +L GG S+EREVS+ S ++ A+ F V Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 36 ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +D+ R + + + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 RAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915] Length = 346 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E +S+ S K A AL+ ++ I + R L Sbjct: 6 IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V+SS G+ +V M + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFVKPARSGSSFGVTKVT 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + + + ++LIE V G E+ C ++G+ + +V +A+ F Sbjct: 186 GPEQLRSAV--AEARQYDSKVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFRI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NS ++PA IP + VQ A ++A+GCRG++R D V Sbjct: 244 HQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVDMFL-KEDGVVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S E++ MV A + Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMVSLALTGK 344 >gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis NE061598] Length = 296 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] Length = 357 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 147/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL G ISSE EVSL S + + + V + + + Sbjct: 6 VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65 Query: 49 -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D F VLHG EDG +Q +LE+ + Y Sbjct: 66 QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131 G+LASA MDK + ++ + G+ + P ++ R + P IK Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLD 188 P GSS+G+ K + L S ++ +++ E V G EL C V+G+ A Sbjct: 186 PANTGSSVGVGKAKDAGGLCAAL--SEAFRFDRKVIAETAVVGDELECAVLGNFDRAEAS 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 VP+ +FY Y KY ++ +PA+I + + +++ A A A+GC G+SR DF Sbjct: 244 CVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRVDF 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R V EIN PG T +S++P++ G + EL+ ++E A Sbjct: 304 FLTREGR-VVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350 >gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 375 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 66/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E +S ++ ++ F+ I + ++ VL Sbjct: 10 VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 70 GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ +PYT G+ AS+ MDK +K ++ G+PV +++ F + Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ + Q ++ ++ H ++++E V G E+ C V+ Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFEAAVV--AARRHDPKVIVEAAVQGAREIECAVLEG 247 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQ 236 + P Y ++ KY + + + PA+IP + ++Q A A Q Sbjct: 248 RAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQ 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P + ++ E+N PGMTP S++P M G S+ +L+ ++E A Sbjct: 308 ILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIELA 367 Query: 297 SC 298 Sbjct: 368 LA 369 >gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480] Length = 342 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AIFSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++ + ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQVIEKGGKPEARTLTYPVFVKPARSGSSFGVTKVNS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ ++PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 352 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 160/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGL 62 Query: 41 SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + ++ +PDLA F LHG GE+G +QA Sbjct: 63 EIAKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT L A++MDK +KQV G+ + +++ D + +S P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + L S+ + D+++IE ++ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTEDEYKDAL--EKSFRYEDEIVIETFIKGREFACGIIDGEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY + V PA IP DI + + L A A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDDQ-GSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQKSIEAR 349 >gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] Length = 361 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 161/350 (46%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLVL------------ 46 +AV+ GG S+E +VS+ S ++ + ++V I + + V Sbjct: 6 VAVIFGGRSNEHDVSVVSAAHVIRSISENPDRYEVICIGITKKGHWVRFMGSAEDIANGS 65 Query: 47 ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 ++K D F VLHG GEDG +Q I ++ E Sbjct: 66 WAENPDNVACIFSPDPVHRGFIQLEDDGSYTNIKVDAVFPVLHGKNGEDGTIQGIFQMAE 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPY 128 IP+ +++SA MDK + ++ + GV I ++ + + P Sbjct: 126 IPFVGCDLISSACCMDKDVTHTILEAHGVRTAKWISMIYRDISKLDEKCRLMEKELGYPM 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI + + + ++ H ++++EQ ++GIEL C VMG+ Sbjct: 186 YVKPANCGSSVGITKAHDFEELKAGIKL--AFTHDHKVVVEQGINGIELECAVMGNDEPF 243 Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + + ++FY Y+ KY++ +S +PA++P ++ +E++ A A +A+GC G++R Sbjct: 244 ASTVGEIAAANEFYDYDAKYNNSDSKTYIPARVPDEVIEEIRETAVRAFKAMGCEGLARC 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V EIN PG T +S++P++ + G S+ E +++ A Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTQISMYPKLMEHEGISYAEQEDRLIKLA 352 >gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans] Length = 343 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 147/335 (43%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWENDNCC 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+VLHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ + N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + D + + ++LIEQ V G E+ C V+G++S +V +I + F Sbjct: 186 GADEL--DAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+ +PA + + +Q A + A+GCRG++R D + ++ Sbjct: 244 HQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A G +F EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLI 337 >gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] Length = 361 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 13 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 72 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 73 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD S V Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250 Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI A ++ FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + R V + EIN PG T +S++P + G ELL +++ A Sbjct: 311 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359 >gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] Length = 389 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 158/363 (43%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A A++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAIADRA 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ R Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + LD + + H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFD--GLDEAIAEARRHDPKFLIEALVQGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ AS+ V +Y +E KY +++ ++PA + + EVQRLA Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF EIN PG TP+S++P+M +G + EL+ ++ Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378 Query: 294 EDA 296 + A Sbjct: 379 QAA 381 >gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] Length = 324 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 167/308 (54%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58 + VL GG S E E+SL SG+ AL+ AGF+ V +D+ L D+AF + Sbjct: 11 VIVLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NR 115 HG++GEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+PV I V + Sbjct: 71 HGHYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTK 130 Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 FT + + P +KP GSS G+ + + + + + GD++LIE+ Sbjct: 131 FTDEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQLLQAIEDAGA--QGDRVLIEEC 188 Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+T V+G+ +L + EI + +FYS E+K + H+ PA++ D+Y Q Sbjct: 189 VVGTEITVPVIGNDHPTALPIVEIVF-EDEFYSIEVKAEPASLHHITPARLAPDVYARAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH+A+GCRG+SRSDF+ LE N+ PGMT S+ P+ A G F EL Sbjct: 248 ELAICAHKALGCRGVSRSDFIV-KADGTPVILETNMIPGMTERSLIPDSARTDGIPFSEL 306 Query: 289 LLWMVEDA 296 +E A Sbjct: 307 CTRFIEYA 314 >gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 13 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGRWLLVDGVKDIEDGSWRE 72 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 73 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD S V Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250 Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI A ++ FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + R V + EIN PG T +S++P + G ELL +++ A Sbjct: 311 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359 >gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] Length = 338 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 163/335 (48%), Gaps = 47/335 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV+ GG S+E EVSL S A + L+ +++ I + R Sbjct: 4 IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63 Query: 41 ----SVGLVLAH----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + +L +K D F VLHG GEDG +Q ++EL +P Sbjct: 64 EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G L+S+L MDK ++ ++V G+ V ++++ + + + P +KP++ GSS G Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAVPKAVVLRKG--EKADTLVYPVFVKPVRAGSSFG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 I + +++ + + ++ H D+++IE+ ++G E+ C V+G+ L V + + Sbjct: 182 ITKVDREEDLEKAV--ELAFVHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ ++ KY+ NS +PA+I +I ++++ A ++ + C+G +R D P +++ Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTP-DKRIV 298 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T S +P M F ++L ++ Sbjct: 299 FNEVNTIPGFTSHSRYPNMMKGIDMLFEDVLDNLI 333 >gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 369 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 61/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG +SE VS+ + A++ + ++V I + + VLA Sbjct: 11 VAIVFGGRNSEHAVSILGAGSVLGAIDRSKYEVIPIGIAQDGRWVLASGDQRYAIEGDEL 70 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG F EDG +Q +LE+ + Sbjct: 71 PSVDVQGTGLALPSGGGSLVAYDAGSIPVELGQVDVVFPVMHGPFAEDGTIQGLLEMAGV 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYV 129 Y SG+LASA+ MDK K V+++ G+PV P +++ + + P Sbjct: 131 RYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYVVIRDRDWRTDRDRVLKEVQELGWPVF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS GI + + + + H ++L+E + G E+ C V+ + Sbjct: 191 VKPARAGSSQGISKAHDLEELEAAV--GFAREHDPKVLVEAAIAGREIECAVLESLGDEA 248 Query: 190 TEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP +F+ +E KY + + +PA IP D+ + ++ +A A +A+GC G Sbjct: 249 ARASVPGEVLVRGDHEFFDFEAKYIGDDMSLSVPADIPADVAENLRAMAVRAFEALGCEG 308 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR DF + ++ EIN PG T +S+ P++ A G S+ EL+ +++ A Sbjct: 309 LSRVDFFYTA-DGRLILNEINTMPGFTAMSVAPQLWAATGLSYAELVERLIQLA 361 >gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 323 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 150/321 (46%), Gaps = 25/321 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-------PDL 53 +AV+ GG S E +VSL+SG+ A A + G V + ++ + D+ Sbjct: 3 VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFCDV 62 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 LHG GEDG++Q L+ L +PY SG+ ASA+ +DK +K V+ + G+PV P I + Sbjct: 63 VVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGITL 122 Query: 114 NRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + + I P +KP GGSS G+ + + + ++ Sbjct: 123 RGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAA--GLDS 180 Query: 165 QLLIEQYVDGIELTCGVMGD-----ASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAK 218 Q+L+EQ + G E+ VM + EI P F+ KY+ + V+PA Sbjct: 181 QVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPAP 240 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++R A Q +GC G++R DF P + E+N PG TP S FP M Sbjct: 241 LDPALAASLRRTAVEVFQTLGCAGLARVDFFV-PADGQPVVNEVNTFPGFTPASQFPRMW 299 Query: 279 AYAGYSFRELLLWMVEDASCL 299 A AG S+ EL+ ++E A Sbjct: 300 AAAGMSYPELVHNLLETARAR 320 >gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] Length = 353 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 165/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + V+ GG+S E VS+ S +AL+ F+V + +D VL++ Sbjct: 8 VCVIFGGVSGEHNVSIQSAITVVNALKQGENANRFEVISLYIDSQGRWMNNNVAKEVLSN 67 Query: 49 LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG +Q +L+L P+ SG Sbjct: 68 GRKPSTNETPENLSSQGFRYFPEDIEEIDVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKP 132 +L SAL MDK+ K +S +P +N+ + + H + P IKP Sbjct: 128 VLGSALGMDKIAMKIAFASANLPQVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI Q + L ++ NH +++IE+ V G EL CGV+G + + + Sbjct: 188 ANLGSSVGITKAYNKQQLIEGLNIAA--NHDPRIVIEESVTGRELECGVLGKEKMIASTV 245 Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 K SD+Y Y+ KYS ++S ++PA I +I K++Q L+ LA +AI GI+R DF + Sbjct: 246 GEVKHQSDWYDYQAKYSGVSSEVLIPAPISEEISKKIQELSLLACKAISVEGIARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T S++P + +G + +L+ +VE A Sbjct: 306 KEDTNHVLINEINTLPGFTMQSMYPMLWNQSGLNIEKLVAILVETA 351 >gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 353 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 5 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 64 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 65 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 125 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD S V Sbjct: 185 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 242 Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI A ++ FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 243 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + R V + EIN PG T +S++P + G ELL +++ A Sbjct: 303 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 351 >gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] Length = 356 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 162/339 (47%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S+E +VSL + ++ +A++ + + I + + Sbjct: 6 ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65 Query: 46 -LAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L+H++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ ++ G+P P + + ++ + ++ P +KP GSS+ Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI +++ + ++ ++ +L+IEQ V+ E+ V+G+ + + T V Sbjct: 186 GISKCTDSETLIHGIEEALQFDR--KLVIEQGVNAREVEVAVLGNDTPETTLPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY +PA I +I ++ +A A +A C G+ R+DF K+ Sbjct: 244 DFYDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-DDKI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ EL+ ++ A Sbjct: 303 YINETNAMPGFTKFSMYPLLWENMGKSYSELITDLINLA 341 >gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] Length = 389 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 157/363 (43%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A ++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGVIDREKYDVLPIGITGEGRWALAADEPARMAITDRS 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ R Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPEAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + LD + H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFE--GLDEAIEEARRHDPKFLIEALVQGREIE 261 Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 CGV+ ASL V +Y +E KY +++ ++PA + + EVQRLA Sbjct: 262 CGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A C G+ R+DF E+N PG TP+S++P+M +G + EL+ ++ Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEVNTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378 Query: 294 EDA 296 + A Sbjct: 379 QAA 381 >gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] Length = 348 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+A + T V FY Y+ Sbjct: 188 LAGLHKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 246 KYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336 >gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] Length = 348 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 86/329 (26%), Positives = 157/329 (47%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA +P+++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSNLIKELV 333 >gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)] Length = 384 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 159/347 (45%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+++GG S E VS++SG + + ++ F V I +D Sbjct: 14 VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 L + D+ F+++HG+ GEDG +Q + E+ +PY Sbjct: 74 ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKP 132 + + SA+ M+K+ K ++++ +P +V+ + + + P +KP Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191 GSS+GI + + + + + Q+L+E+ + EL V+G+ + +V+ Sbjct: 194 ANTGSSVGISKVDSYDDLQSAIEVALKF--DPQVLVEEGITPARELEVAVLGNHNPEVSC 251 Query: 192 IAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I P FY Y KY + + PA + ++ +++ +A ++ +G +G+SR DFL Sbjct: 252 IGEINPPDGFYDYASKYLNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLSRVDFL 311 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + + + +E+N PG T +S++P++ +G + L+ ++E A Sbjct: 312 LDQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIELA 358 >gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct] Length = 296 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] Length = 338 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ER +SL SG+A AL++ G + ID + D F LHG Sbjct: 18 IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 FGEDG VQ +LE IPYT S AS L+ DK +KQ VP ++ Sbjct: 78 RFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFD 137 Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P VIKP GSSLG+ ++++ + + + ++ + L++E + G Sbjct: 138 SLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAY--ERARHYDEALIMEAAIVGS 195 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T G+ D L I +F+ + KY ++ ++ +P ++++ A Sbjct: 196 EWTVGLHDDEILPPICIET-DREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRGAV 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G GISR D + D + LEIN PG+T S+ P+ A AG+S EL + Sbjct: 255 HALGVTGISRVDLMLDSEGN-PWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHR 313 Query: 296 A 296 A Sbjct: 314 A 314 >gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] Length = 360 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 156/345 (45%), Gaps = 49/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG +A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ ILA+A+ Sbjct: 67 VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V R D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ + V+ +I Sbjct: 187 VGVSHVTNADEYKKALDE--AFKYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +YSYE KY +++ + PA++P I ++V+ A +QA C G++R D + P Sbjct: 245 AGSWYSYENKYDDNSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP-D 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIEAGQAR 348 >gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5] Length = 371 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 50/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ERE+S+ +G AL G +D+ Sbjct: 28 IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87 Query: 39 --------DRSVGLVLAHLK-------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D + + + D+ F LHG+ GEDG VQA +LL I Sbjct: 88 AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLK 134 YT +G L+SAL+MDK +K++ VP + + + + P V+K Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ + + ++++ D++++E+Y+ G E + V+ + + EIA Sbjct: 208 GGSSVGVYIVNNQKEYEDAI--DGAYSYEDEVVVEEYIRGREFSVAVVDGKAYPIIEIA- 264 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK FY Y+ KY + ++ PA+I ++ +++Q A +A+ G +R DF+ + Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMM-KEN 323 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ LE N PGMTP S+ P+ A G + +L ++ Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELI 362 >gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7] gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7] Length = 346 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--- 51 VL GG SSE VS S + + L+ ++++ + +D G LA Sbjct: 7 VLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWLDN 66 Query: 52 --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D+AF VLHG +GEDG +Q + EL ++PY ++ S+++MDK+ +K Sbjct: 67 SSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIYTK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQ------------------HLISPPYVIKPLKGGSSL 139 +++ + GVP S+ V + + + P IK + GSS+ Sbjct: 127 KILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197 G + L +++ ++ +++E+ +D IEL V+G+ + V+ + +P Sbjct: 187 GCYRCDNQTELIGKLSEAAKYDRH--VVVEECIDCIELETAVLGNDDVIVSRVGQIMPHG 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY++E KY S +PA + I +++++ A +A+ G+SR DF D + K+ Sbjct: 245 EFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTNKI 304 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + EIN PG T +S++P++ G ++ ELL ++ Sbjct: 305 YLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLI 340 >gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S+ER+VS+ S ++ A+ F V + ++ G + + D Sbjct: 40 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 98 Query: 53 -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F VLHG GEDG +Q LE+L++PY + IL+S++ Sbjct: 99 LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 158 Query: 90 SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142 +MDK+ + QV+ S +P + + + + + P +KP GSS+GI Sbjct: 159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 218 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + + + + ++LIEQ VD E+ G++G+ + T V FY Sbjct: 219 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 276 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 277 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 335 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P + G S+ L+ +V A Sbjct: 336 ELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371 >gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 370 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVAPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct] Length = 331 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 32 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 92 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 150 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 151 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 207 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 208 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 265 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 266 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321 >gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY +++ + PA +P +I V++ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343 >gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 348 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 ++ + + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I I +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9] gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9] gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus thermophilus ND03] Length = 348 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A++ F+V + +S + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP + +++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +L+ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425] gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425] Length = 349 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 62/350 (17%) Query: 1 MAVLMGGISSEREVS----------LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 + +L GG S E EVS L++ + V + ++ + Sbjct: 5 VGLLFGGCSGEHEVSIASARAIARALTTAPN------SDRYTVLPFYIQKNGFWQGEEIA 58 Query: 51 ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +L+L++ P+ Sbjct: 59 QQVLESGVPLADPVEGQPTQLWSFPHAAETVDVWFPILHGPNGEDGTVQGLLKLMQRPWV 118 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------------ISPPY 128 SG+LASA MDK+ K + ++ G+P + VNR + S + P Sbjct: 119 GSGVLASAAGMDKIMMKTIFAAAGLPQVKYLAVNRSQLWSDPCVYTKLCDRIDTTLGYPC 178 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL- 187 +KP GSS+GI ++ + L ++S++ +L++E V E+ C V+G+ Sbjct: 179 FVKPANLGSSVGITKVRNRPQLETALENAASYDR--RLVVETGVIAREVECSVLGNDHPR 236 Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V SDFY YE KY+ ++ ++PA +P I ++Q +A A AI G++R Sbjct: 237 ASVVGEITYSSDFYDYETKYTDGRASLIIPADLPPAIVTQIQEMALTAFTAIDAAGLARV 296 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + ++ EIN PG T S++P++ A +G +F +L+ +++ A Sbjct: 297 DFFYLESTGEILINEINTLPGFTAFSMYPQLWAASGVTFPDLVDQLIQFA 346 >gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 296 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPMAKFLT-DKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S E +V++ S + SA+ ++V I +D++ V Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 48 ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P IKP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193 GSS+GI + + + L + ++ + + L+EQ +D E+ V+G+ + T Sbjct: 188 MGSSVGITRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245 Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V + FY Y KY +PA IP ++ ++ + A A+ +G G+SR DF Sbjct: 246 IVKEEAFYDYNAKYIDNTIQMAIPADIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTN 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++F E+N P T S++P + G + +L+ +++ Sbjct: 306 K-NELFLNELNTMPDFTEFSMYPLLWENMGLKYGDLIEELIQ 346 >gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988] Length = 365 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 375 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 66/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E +S ++ ++ F+ I + ++ VL Sbjct: 10 VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 70 GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ +PYT G+ AS+ MDK +K ++ G+PV +++ F + Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ + Q ++ ++ H ++++E V G E+ C V+ Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFESAVV--AARRHDPKVIVEAAVQGAREIECAVLEG 247 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQ 236 + P Y ++ KY + + + PA+IP + ++Q A A Q Sbjct: 248 RAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQ 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P + ++ E+N PGMTP S++P M G S+ +L+ ++E A Sbjct: 308 ILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIELA 367 Query: 297 SC 298 Sbjct: 368 LA 369 >gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 371 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 151/359 (42%), Gaps = 65/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG SSE +S ++ A++ F+V + + L Sbjct: 9 VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPRGAFTLQEDDASALALDAAA 68 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG GEDG VQ +LEL Sbjct: 69 LPEVVDDGSRVRWPEDAGSRELTVRDADGTERSLGPVDVVFPILHGTQGEDGTVQGMLEL 128 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 +PY SG+LASAL MDK +K V+ + G+ V P V+R + + Sbjct: 129 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGL 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P +KP + GSS+G+ + LD ++ D++L+E + G E+ C ++ + Sbjct: 189 PAFVKPARAGSSVGVSRVVATD--GLDAALEVAFREDDRVLVESGLVGREVECAILDEGP 246 Query: 186 -----SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + EI V DFY ++ KY + V PA + E++ L+ A +A+ Sbjct: 247 GRAPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG++R DF EIN PG TP+S+FP +G ++ +L+ +++ A Sbjct: 307 ARGLARVDFFLTADG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVALA 363 >gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 348 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 ++ + + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I I +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] Length = 303 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + I + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S + P V+KP + GSS+G+ + + D+ + + +++++Y+ G E+T Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLP--QYGSVIVQEYIPGREMTV 177 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ G L + E+ PK FY Y KY+ + +LPA + + V+ A A Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAF 236 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D +F + + ++LEIN PG+T S P A G F EL+ +++ Sbjct: 237 VEAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294 Query: 296 A 296 A Sbjct: 295 A 295 >gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++V++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] Length = 364 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 55/353 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + +L GG S E E+SL S + + L+D + + I +D+ + Sbjct: 7 LVLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKDGLLHQHQYQDLLASKEKLP 66 Query: 44 LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +V KP D+ F ++HG EDG +Q +LEL + Y +L+SA+ Sbjct: 67 VVTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLG 140 MDK ++++ G+ +++ RF + P +KP GSS+G Sbjct: 127 GMDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEIA 193 I K + + + + +++L+E +V G E+ V+ EI Sbjct: 187 IHKAKNMDELINAV--EDALRYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFAGEIR 244 Query: 194 VPK-SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V FYSY KY S + ++PA + +Y+++++ A + C+G++R DF + Sbjct: 245 VNHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVDFFVN 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA----SCLR 300 + +++ E+N PG T +S++P++ +G ++ +LL ++ A +C R Sbjct: 305 EKTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLLDELIRIAMVHQNCRR 357 >gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 354 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 150/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 VL GG SSE VS S + + + + I + + Sbjct: 7 VVLFGGQSSEHVVSCMSVVNVINHMNREKYDLLLIGITEDGHWIKTESAEDIESGRWREG 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D+ F VLHG FGEDG VQ +LEL IPY G Sbjct: 67 KTSAVISPDATKQCVILTEGDRAEFVKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +LASA+SMDK+ +K VV GV + V R + + + P +KP Sbjct: 127 VLASAVSMDKLYTKIVVDDLGVRQAAYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNA 186 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS G+ + + L +++ H ++L+E+ + G E+ C V G + V V Sbjct: 187 GSSKGVARADSREELEAALYEAA--KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVG 244 Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY + +S V+ ++P D V+ A +A+ G++R DF Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVNPELPGDAANTVREAAKAIFRAVDGYGLARVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + AG S +L+ +V+ A Sbjct: 304 KDDGTVVFNEINTLPGFTAISMYPMLWEAAGVSKDQLVDRLVDHA 348 >gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311] gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311] Length = 353 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRSVGLVLAHL------- 49 + V+ GG S E VS+ S +AL++ F+V + +D+ H+ Sbjct: 8 IGVVFGGASGEHAVSIRSAITVINALQEGQNRDHFEVVPLYIDQEGRWWPEHIANSVLEQ 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ + L+ PY SG Sbjct: 68 KQPLAEDSLPHPLPPAGFRSLPIDNDRVDVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+P P + +N ++ + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L +++ H +L++E V EL C V+G L + + Sbjct: 188 ANMGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVV 245 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++D+Y YE KY+ S ++PA +P + ++Q +A A A+ G++R D + Sbjct: 246 GEISFEADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S ++ EIN PG T S++P + +G + +L+ +V A Sbjct: 306 DEKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351 >gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023] Length = 370 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAKPIYITNDGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTVRLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKTELIEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] Length = 304 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 181/307 (58%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG Sbjct: 5 ILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 FGEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N Sbjct: 65 QFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKL 124 Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P V+KP+ GSS+ + + +I +L S+ +++LIE+++ G Sbjct: 125 NIIKLIEKNLKFPVVVKPINEGSSVHVYIC-DKTNILKNLKVLKSY---NEILIEEFIPG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFL 233 E+ +M + SL E+ P+ FY YE KY+ S + H++P + + ++ +A Sbjct: 181 REIQVAIMNNKSLGAIELE-PRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARA 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+ IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W++ Sbjct: 240 AHKIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWIL 297 Query: 294 EDASCLR 300 +DAS R Sbjct: 298 KDASINR 304 >gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus] gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus] Length = 343 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ + ++L+E+ V G E+ C ++G+ + +V +I + F Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG++ E+L ++ Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337 >gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10] Length = 360 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 154/340 (45%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG+ A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY +++ + PA +P +I ++R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 320 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 18/314 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG+ AL G + D D ++ LA PD LHG Sbjct: 11 VVVLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++ +L+L +PY AS L+ DK +K V+ G+ + + Sbjct: 71 ATGEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSE 130 Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS LG V++ ++P ++ + + L+E+ Sbjct: 131 LGAVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAAALPAAMV--GCFAYDPTALVER 188 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 YV G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ + ++ Sbjct: 189 YVSGMDVAVSVIDLGDGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHTPARLEPAVAEK 247 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F Sbjct: 248 VGEVALAAHTALGLRDLSRVDLIVDSA-GLPHVLEVNVSPGMTETSLLPLAVQAAGLDFG 306 Query: 287 ELLLWMVEDASCLR 300 ++ +V A R Sbjct: 307 RVIGSLVARAVTRR 320 >gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 252 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 13/255 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 F LHG GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P Sbjct: 1 FQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPW 60 Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 + + R + + P ++KP + GSS+G+ + ++ ++ L S ++ Sbjct: 61 VALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQ 118 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 H D++LIE+++ G E T ++G+ L I P FY YE KY S + + PA + Sbjct: 119 HDDEILIEKWLCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEA 177 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +Q L A +A+GC G R D + D + + LE N PGMT S+ P A A Sbjct: 178 SQEAALQSLVLQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQA 236 Query: 282 GYSFRELLLWMVEDA 296 G SF +L++ ++E A Sbjct: 237 GMSFSQLVVRILELA 251 >gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] Length = 350 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 154/340 (45%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E VSL S AL+ + V +I +D L Sbjct: 7 VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG +Q + EL IP+ G Sbjct: 67 TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSL 139 + AS L MDK S Q+ G+ V P ++ +D + + P +KP +GGSS+ Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196 GI I + + D + + H ++LIE+ V G E+ C ++ L + Sbjct: 187 GITKINTWEEL--DAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDF+ YE KY ++ PA++P + ++++RLA + C+G+ R D P ++ Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + EIN PGMT S +P M AG SF +L ++E+A Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101] Length = 343 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis] gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1] gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392] gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661] gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis] Length = 342 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 348 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P IKP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 ++ + + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I +I +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 349 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203 + L S ++ + ++++IEQ VD E+ C V+G D S + V +FY Y Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+P D+ +++Q A A++A+ G+SR DF V+ EIN Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVTK-DGNVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] Length = 304 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I + Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QIR 299 >gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066] gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 348 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A++ F+V + +S + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP + + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + + + ++LIEQ V E+ G++G+ ++ T+ V FY Y+ Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P+++ +++ A A +A+G G++R DF ++ E+N Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S++P + G S+ +++ +V Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDIIKELV 333 >gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO] gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 296 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +AVL+GGIS ER +SL SG+ AL+ G V IDVD + + LK ++ FN LH Sbjct: 3 IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G+FGEDG VQAIL+ + + YT S +LASA+ DK+ + +V+ V +V + + Sbjct: 63 GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDGY-VNFPEYTIVKKPVKE 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S P VIKP K GSS+G+ + + DL + ++++I++Y++G ELT Sbjct: 122 SP--YGFPCVIKPRKEGSSIGVHICDNSNQLYNDLSEEL--KKYNEMMIQRYIEGRELTV 177 Query: 180 GVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ L V E+ PK FY Y KY S + +LPA + ++ Y++V + A + Sbjct: 178 SILEIGKPQILPVLELK-PKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSLRAFE 236 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R D + + LE+N PG+T +S P A AG SF EL+ +++ A Sbjct: 237 LCGCEGFARVDGIL--KDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDAIIQTA 294 >gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 326 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 168/301 (55%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG ERE+SL +G+A +ALE G +V++I + L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K+ + V R Sbjct: 65 RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KP GGSS+G+ ++++ +++ + Q+S + G + L+E+YV G E Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEALAFAVAQASRF--GGEALVERYVAGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L E+A P+ F ++ KY + + P ++ V+ LA A++ Sbjct: 183 VTVGILGGQVLGSCEVATPREGF-DFDAKYK-GGAAYFCPPRLSPTRVANVEALALAAYR 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG +R D + V LE+N PG TP S+ P++AA AG F L ++ A Sbjct: 241 ALGCRGQARVDLMCSDTENDV-VLEVNTLPGFTPTSLLPKIAARAGLDFAALTERILALA 299 Query: 297 S 297 + Sbjct: 300 T 300 >gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica LVS] gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. holarctica LVS] Length = 296 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + + + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D I P+++FY YE KYS S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium] gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] Length = 360 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG+ A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY +++ + PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P +E ++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 356 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE VS S A L+ ++V I + R + Sbjct: 9 VAVVYGGRSSEHSVSCISAGAIMEHLDPEKYEVVPIGITREGTWTQGNRAGLNIVDGRLP 68 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ VLHG +GEDG VQ + EL IPY Sbjct: 69 EVELHDELALSLNPATRGRIHNVTRHEHYTEVDVIVPVLHGPYGEDGTVQGLFELSGIPY 128 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDS--QHLISPPYVIKPLKGG 136 +G+LASA+ MDK +K+++ + G+PV P ++ T+D + + P +KP +GG Sbjct: 129 VGAGVLASAVGMDKEFTKKLLVAEGLPVAPQEVLTGEATLDDLQKERLGLPVFVKPARGG 188 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA- 193 SS+G+ + + + L + ++ D++LIE + G E+ GV+ D SL + A Sbjct: 189 SSIGVSKVSAWEDLEAAL--TLAYESDDKVLIEPEISGAEVEVGVLERPDGSLQASVPAK 246 Query: 194 -----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + FY ++ KY + +PA + ++ E+++ A A +A+G G+SR DF Sbjct: 247 ILGTTESEEGFYDFDAKYIDEGVSAAIPAPLSEELTAELRQRAIEAFRALGASGLSRVDF 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S E+N PG TP+S++P++ A G + ELL +++ A Sbjct: 307 FVSDYS--YCINEVNTFPGFTPISMYPQVFAAVGVGYAELLDTLIQTALAR 355 >gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 310 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125 Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ +I + P V+K GSS+G+ +++++ + + + + + L++EQ++ Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAV--TEALKYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V EI P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTVTSLVPKAANEMGIDFPTLCEKI 301 Query: 293 VEDAS 297 + AS Sbjct: 302 LLTAS 306 >gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis Il1403] gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 349 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203 + L S ++ + ++++IEQ VD E+ C V+G D S + V +FY Y Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+P D+ +++Q A A++A+ G+SR DF V+ EIN Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVTK-DGNVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171] Length = 370 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 IATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P P++ V + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI Q + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] Length = 370 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928] gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 394 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 82/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHLK------ 50 +AV+ GG SSE +S + + AL + +++ I + VLA L Sbjct: 13 VAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDLN 72 Query: 51 --------PDLAFNV----------------------------------------LHGNF 62 P++ LHG + Sbjct: 73 LAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGPY 132 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG +Q +LEL +PY SG+LASA+SMDK K++++ G V P +V ++ Sbjct: 133 GEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTEE 192 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP + GSS+GI + + + + ++ H ++L+E + Sbjct: 193 GRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAI--DAARRHDPKVLVEAAI 250 Query: 173 DGIELTCGVMGD--------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 +G E+ CGV+ ASL FY ++ KY ++ +PA++ + Sbjct: 251 EGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEI 310 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++++ A + +GC G++R DF + D + EIN PG TP S+FP+M Sbjct: 311 EDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQA 370 Query: 281 AGYSFRELLLWMVEDA 296 AG S+ EL+ +++ A Sbjct: 371 AGLSYPELIARLIDTA 386 >gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] Length = 363 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 160/345 (46%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVSL S + ++ F V+ I VD+ L Sbjct: 6 VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L +L F VLHG FGEDG VQ +LEL ++PY +G+L Sbjct: 66 VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLK 134 S+L MDK K++ G+PV P + + + S P +KP + Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEI 192 GSS+G+ + ++ + + + S+ D+LLIE V E+ C V+G+ L Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSF--DDKLLIEPAVQAKEIECSVIGNQELTTFAPGE 243 Query: 193 AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP DFY Y+ KY + ++P+ + + K V++++ A++ G +R D ++ Sbjct: 244 IVPSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFYE 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV EIN PG T +S+FP++ G ++ ELL +++ A Sbjct: 304 EATGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLDLA 348 >gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428] Length = 308 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV+ S +V A D+AFNV+HG Sbjct: 10 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPA--GTDVAFNVIHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ KQ VP ++ + Sbjct: 68 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILRDG---A 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYV+K K GSS+G+ +++ + + +W++G +LL+E +++G ELT G Sbjct: 125 NPTLPLPYVVKAPKEGSSVGVFIVR--EEAKVADTMREAWSYGKELLVEDFINGRELTVG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+GD +L + EI P DFY+++ KY + H PA I ++ + VQ +A A Sbjct: 183 VLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAA 241 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +AI R D L + + LEIN PGMT VS+ PE AA AG S+ EL ++E Sbjct: 242 ARAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIE 300 Query: 295 DASCLR 300 + R Sbjct: 301 LSLARR 306 >gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14] Length = 348 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+A + T V FY Y+ Sbjct: 188 LAGLRKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 246 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336 >gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245] gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245] Length = 363 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A+L GG S+E E+S+ S ++ + A++ ++V + + Sbjct: 6 IALLFGGKSTEHEISIISARSISGAIDRERYRVVPVYITHEGAWFSGDSAAEILSLDLSS 65 Query: 40 -----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+ F LHG++GEDG VQ +L+ + Sbjct: 66 IMRKSSVGNTETLLREMIRNSAEKPFDFNFRAAGIDVVFIALHGSYGEDGRVQGLLDTMG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127 IPYT G+ ASA++MDK +K + GV PSI ++ + + P Sbjct: 126 IPYTGCGVSASAIAMDKALTKLCAADAGVATAPSITLDADSYLADPEPVHELVDSTFGYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-- 185 +KP GSS+GI + ++P L + S++ ++L+E V G E+ V+G+ Sbjct: 186 LFVKPASLGSSVGISKVHLPAALPEALKVACSYDR--KILVEAAVSGKEIEVAVLGNDRP 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V P SDFY ++ KY + +PA++P + V+ A ++A+GCRG+SR Sbjct: 244 VASVPGEVEPGSDFYDFQDKYIHNTAKTFIPARLPDKLLDSVRCSAITVYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + + EIN PG T +S++P++ +G F L+ ++ A Sbjct: 304 VDFFVNEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354 >gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3] gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 365 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAILKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] Length = 365 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P +++ + A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] Length = 315 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 151/283 (53%), Gaps = 8/283 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG S EREVSLSS K +AL D G++ +D D+AFN+ HG Sbjct: 13 AVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWTGLK-GVDIAFNIQHGV 71 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG+ Q +L L + T S +L SAL+MDK+RSKQ+ + G+P LVN T D+Q Sbjct: 72 GGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHT-DAQ 130 Query: 122 HLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L++ +KP GSSLG+ + +S ++ + GDQ+L E+++DG E T Sbjct: 131 ALLADWGAAFVKPCSEGSSLGMTRVDSPESFLQACESAAVF--GDQILAERFIDGPEYTV 188 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++GD +L I + +FY YE KY + + + +P + D + LA A A+G Sbjct: 189 AILGDRALPPIHIESAR-EFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAALG 247 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 C R D + D S K LE+N PGMT S+ P A AG Sbjct: 248 CSVWGRVDLMRD-SSGKFQLLEVNTVPGMTDHSLVPMAATAAG 289 >gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 357 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL+ + + + R +L++ Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV S+ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ DA+ + EI Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + +PA +P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG T +S++ + A +G + E++ +VE Sbjct: 307 QDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVEHGLAR 353 >gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245] gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 370 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 AATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P P++ V + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI Q + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKDYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159] gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159] Length = 349 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S+ER+VS+ S ++ A+ F V + ++ G + + D Sbjct: 6 LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 64 Query: 53 -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F VLHG GEDG +Q LE+L++PY + IL+S++ Sbjct: 65 LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 124 Query: 90 SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142 +MDK+ + QV+ S +P + + + + + P +KP GSS+GI Sbjct: 125 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 184 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + + + + ++LIEQ VD E+ G++G+ + T V FY Sbjct: 185 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 242 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ Sbjct: 243 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 301 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P + G S+ L+ +V A Sbjct: 302 ELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 337 >gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842] gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1] gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3] Length = 342 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327] gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327] Length = 364 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 159/346 (45%), Gaps = 57/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44 +A+ GG S E +S+ S +A AS ++ + + ++ + +DR V + Sbjct: 6 VALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALDVAV 65 Query: 45 VLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELLE 76 +L + D+AF LHG++GEDG +Q L+ + Sbjct: 66 LLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLDTFD 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPP 127 IPY G+ +SALSMDK +K + GV V + V + + P Sbjct: 126 IPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERFAFP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + L ++ + ++L+E+ + G E+ V+G+ Sbjct: 186 VFVKPANLGSSVGISKVHNAAELRPALDKACAL--DAKVLVEETITGREVEVAVLGNDDP 243 Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P SDFY +E KY ++ V+PA +P ++ V+ A +A+GC G++R Sbjct: 244 IASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 DF + + ++ EIN PG T +S++P + + +G F EL+ Sbjct: 304 VDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349 >gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055] Length = 342 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSXDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 368 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 166/357 (46%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS+SS +A A A+ + ++V + + VL Sbjct: 6 IGLLFGGRSGEHEVSISSARAIARAIASDQNASKYEVLPFYIQKDGRWLAGTVPQQVLET 65 Query: 49 LKP-----------------------------------DLAFNVLHGNFGEDGLVQAILE 73 KP D+ F VLHG GEDG VQ +L+ Sbjct: 66 GKPLQLEGEEAIANLGENLILTPQSPIAYGQFPRPDIVDVWFPVLHGPNGEDGTVQGLLK 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------Q 121 L+++P+ SG+L SA+ MDK+ K V + G+P V R + S + Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYTAVTRSQVWSNPCIFPKLCDQIE 185 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP GSS+GI ++ + L ++S++ ++++E V EL C V Sbjct: 186 ENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAASYDR--RIIVEAGVVARELECAV 243 Query: 182 MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + KSDFY YE KY+ + +PAK+ I ++Q +A A A+ Sbjct: 244 LGNDRPQASIVGEITYKSDFYDYETKYAHGQADLFIPAKVSDAIASQIQSMAIEAFLALD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + + +V EIN PG T S++P++ A +G SF EL+ +++ A Sbjct: 304 CAGLARVDFFYVESTGQVLINEINTLPGFTATSMYPQLWAASGISFAELVDRLIQLA 360 >gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e] gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561] gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] Length = 370 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKELVDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 353 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG SSE VS S + A+ + + + V + + V Sbjct: 6 IVVLFGGQSSEHVVSCMSVQNVAANINEEKYNVILVGITEDGHWVKVDSLSQVKDDTWRE 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG VQ ILEL +IPY Sbjct: 66 SKAGAVLSPDAKEKCLIVTENGSFEKIPVDVVFPVLHGLYGEDGTVQGILELAKIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K++VS G+ + V + + + I P +KP Sbjct: 126 GVLASAVSMDKLSTKRMVSGLGICQAAYVSVMKAELKDMDAVISKIEKEIPYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190 GSS G+ + + L +++ ++ ++L+E+ + G E+ CGV GD + V Sbjct: 186 AGSSRGVTRADNREELITGLKEAA--DNDRRILVEEMIVGREIECGVFGDGDSTKASGVG 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI + ++FY ++ KY + S V+ ++P + V+ A A+ G+SR DF Sbjct: 244 EI-LAAAEFYDFDAKYYNAESKTVVDPELPDGATERVREAAVKIFNAVDGYGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + G R+L+ +++ A Sbjct: 303 -KADGTVVFNEINTLPGFTAISMYPMLWEARGVDKRQLIDDLIDHA 347 >gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067] Length = 370 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 IATDKIELALIETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P P++ V + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI Q + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 344 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 149/334 (44%), Gaps = 44/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + VL GG S E VS+ S + A L+ ++ I + R L Sbjct: 6 IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65 Query: 49 ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ D+ VLHG FGEDG VQ + EL + Y + + Sbjct: 66 AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + S+ G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 +P + ++ + ++LIE+ V G E+ C V+GD +V IA+ F + Sbjct: 186 PDDLPAAI--EAAREYDSKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243 Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + S NST ++PA IP + VQ+ A ++A+GC G++R D P +V Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M + AG S E+L +V Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336 >gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] Length = 366 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 153/348 (43%), Gaps = 57/348 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA----- 54 ++ GG S+E ++S+ + + + ++V I + RS + + D+ Sbjct: 5 LVYGGKSAEHDISILTAFSIIKEVYYDYYEVQPIYITRSGQWIKGAIVKQASDIVASDAL 64 Query: 55 -----------------------------------FNVLHGNFGEDGLVQAILELLEIPY 79 F VLHG GEDG VQ + E++ +PY Sbjct: 65 KLAVSDNVQFAVDDNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPY 124 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LASA MDK+ SKQ+ G+P P + V + + + P I Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMYI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + + + ++++EQ ++ E+ V+G+ + ++ Sbjct: 185 KPANLGSSVGISKAENRDELIAAIELAL--RYDRRVVVEQGIEAREIEVAVLGNDDIHIS 242 Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V DFY YE KY + + +PA I D+ ++ A A QA+ G+SR DF Sbjct: 243 VPGELVKSVDFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDF 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +VF E+N PG T S++P + G ++ +L+ +++ A Sbjct: 303 FLT-SNDEVFINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQLA 349 >gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1] gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1] Length = 316 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 23/318 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + VL+GGIS ERE+S+ SGK A AL + G V +IDVD + L+ LK D FN+LH Sbjct: 3 LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------CGVPVCPSI 111 G FGEDG +QAIL+ + IPYT SG+ S ++ DK V + V + + Sbjct: 63 GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 L++ + + I P V+KP K GSS+G + + + L + + D+ Sbjct: 123 LISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNE--FKNYDE 180 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +++++Y+ G E+T V+ + PK FY YE KY+ + ++PA++ + Sbjct: 181 MIVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDGE 240 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +++ ++++GC+ SR D + ++LE+N PGMT +S P A G Sbjct: 241 TTEKINHAVLKIYKSLGCKHFSRIDGIV--KDGVFYFLEVNTLPGMTELSDLPMSANAFG 298 Query: 283 YSFRELLLWMVEDASCLR 300 SF EL+ ++++A C + Sbjct: 299 ISFDELVDLIIKEA-CRK 315 >gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris SK11] gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 367 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 86 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + ++ + P +KP GSS+GI + Sbjct: 146 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 205 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203 + L S ++ + ++++IEQ VD E+ C V+G D S + V FY Y Sbjct: 206 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 263 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 264 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 322 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 323 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 355 >gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] Length = 366 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 193 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+ A + A C G++R D + Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 309 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351 >gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] Length = 365 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRKAVLKAVSRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] Length = 365 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGTDEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii] Length = 348 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 99/342 (28%), Positives = 161/342 (47%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV+ GG S+E VSL S + + ++V I + R Sbjct: 6 LAVIFGGNSTEYGVSLQSAFSVLENVNQEKYEVIPIGITRQGSWYRYGGAYGKIPDDTWM 65 Query: 41 ----SVGLVLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ V+ H P DLAF VLHG GEDG VQ +LEL IP Sbjct: 66 RDEKNLTPVVVHQNPAVHGILELSVWENRVTQLDLAFPVLHGKNGEDGTVQGLLELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLK 134 G+LASAL MDK R+ ++ + G+ V ++++ + + + P +KP++ Sbjct: 126 IVGCGVLASALCMDKDRAHRLAGAAGISVPKAVVLQKHQKCRAVVLPEDFTYPLFVKPVR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS GI I + + D S+++ H D++++E+ VDG E+ C ++G L V + Sbjct: 186 AGSSCGIAKIYGEGEL--DAAVSAAFCHDDEVIVEENVDGFEVGCAILGMDVLTVGRVDE 243 Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + F+ + KY+ +S +PA+I +++Q A +Q +GC G +R D P Sbjct: 244 IELTGGFFDFTEKYALKHSRIHMPARIDAKTEQKIQETAKNIYQVLGCSGFARVDMFLTP 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V + E+N PG T S +P M G SF +LL +++ Sbjct: 304 S-GDVVFNEVNTIPGFTAHSRYPNMMKGIGLSFEQLLERLLD 344 >gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] Length = 370 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKELAEAM--TEAFLYDRRVVVEQGVVAREVEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTA-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4] gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4] Length = 345 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 153/339 (45%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------AHLKP 51 + V+ GGIS E VS+ S + A LE ++ + + + L H +P Sbjct: 6 IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65 Query: 52 -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V S G+ + + P +KP + GSS G+ + + Sbjct: 126 SALCMDKSLAYLVTDSAGIATPNFWAGSANETVDAGKFTYPVFVKPARSGSSFGVTKVSR 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202 ++ +P L ++ + ++LIE+ V+G E+ C V+G+ + + +I + F + Sbjct: 186 EEDLPSALADAAQF--DSKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFKIH 243 Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + S NST ++PA IP + VQ A ++A+GCRG++R D V Sbjct: 244 QEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE-DGTVML 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PG+T S +P M A AG SF E+L MV A Sbjct: 303 NEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMVSLALA 341 >gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] Length = 304 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S ERE+SL SG+ A+ L G +V +D + L LKPD F LH Sbjct: 3 IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G GEDG +Q +L +L IPY S + AS ++MDK +K V G+P I V Sbjct: 63 GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122 Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + P+++KP GS++G+ +++ + L ++ D+LL+E+++DG Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180 Query: 175 IELTCGV--MGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T G+ +G L + I V K D + Y+ KY + HV I ++ + + + Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G++R D++ + LEIN PGMT S+ P+ +AG F E L Sbjct: 241 KRICKIVGIGGVARLDYIV--KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298 Query: 292 MVEDA 296 +++DA Sbjct: 299 LIKDA 303 >gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] Length = 370 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+ P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIQQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2] gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1] Length = 365 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAVSRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262] gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262] Length = 370 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKTELIEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] Length = 360 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY +++ + PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] Length = 367 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 161/357 (45%), Gaps = 61/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG S E VS S A L++ F+V I + + + + Sbjct: 14 VAVIYGGASPEHSVSCVSAGAIMDHLDEDRFRVVPIGITKDGVWTVGTRETDTLRTQGRT 73 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F VLHG GEDG +Q + EL Sbjct: 74 MPEVIPGEEVALSTSPSRRGEFRFVTGDRAGEVFDTVDVIFPVLHGPHGEDGTIQGLFEL 133 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131 I Y G+LASA MDK R+K ++ + G+P+ ++++ + + + P +K Sbjct: 134 SGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQVVLHVGESLSDEDKETLGLPVFVK 193 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV 189 P +GGSS+GI + D LD + H ++++E VDG E+ GV+ D SL V Sbjct: 194 PARGGSSIGISRV--DDWANLDAAVELAREHDWKVIVEAGVDGAEVEIGVLQRADGSLQV 251 Query: 190 TEIAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + ++ FY +E KY + +PA++P D+ K + A A +A+G G+ Sbjct: 252 SVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPAELPKDVLKALDTDARRAFRALGSDGL 311 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R DF E+N PG TP+S++P+M A +G ++ ELL ++E A R Sbjct: 312 TRVDFFVT--DNGPIINEVNTMPGFTPISMYPQMFAASGVAYEELLSALIERALVAR 366 >gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3] gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4] Length = 365 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 152/355 (42%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AV+ GG+SSE +S S +A++ F VS + + Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65 Query: 39 -------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 DR + +V D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ +A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] Length = 301 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 157/301 (52%), Gaps = 9/301 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L G +SE++VS+ +G + L+ +++ I ++ + L+ D A LHG + Sbjct: 2 LLWAGYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKY 61 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119 GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + + +D Sbjct: 62 GEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLD 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ G E+TC Sbjct: 122 ELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEITC 179 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ L + I ++F+ Y KY ++ + ++P I + V + + ++A+ Sbjct: 180 SILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKALK 237 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + + Sbjct: 238 CSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSLKV 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] Length = 326 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 158/324 (48%), Gaps = 33/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +VS+ S + S ++ + + +++ + L Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q + Sbjct: 65 SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+LVN+ D I P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D ++IE ++DGIEL G +TE+ V K++F+ Y KY+ T Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYN-GEVT 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 241 EITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 P+ AG +E++ ++ED+ Sbjct: 300 FIPQQVRAAGIDIKEVMTDIIEDS 323 >gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] Length = 356 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 156/350 (44%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG SSE ++S S +++ + V + + + + Sbjct: 6 VAVLFGGQSSEHDISCISAATVIESIDREKYDVITVGITKDGRWIKTDNVEDIKSGKWRE 65 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG +Q ILEL IPY Sbjct: 66 GKVTMILSPDRIHKGFVEIEDGKAEVTEVDVVFPVLHGLYGEDGTIQGILELAGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSC-GVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133 G++ASA+SMDK+ +K++V V + V R+ + + + P +KP Sbjct: 126 GVVASAVSMDKLFTKKIVDGLKDVRQAKYVPVRRYELKEMDKVLDGIEERLPYPVFVKPS 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS G+ + L ++ H +++L+E+ + G E+ C V+G + + + + Sbjct: 186 NAGSSKGVSKAGDRAGLEKALRLAA--EHDEKILVEETIVGREIECAVLGTSDVKASGVG 243 Query: 194 V----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + FY ++ KY++ S V+ ++P EV+ A +A+ G+SR DF Sbjct: 244 EILAADSAAFYDFDAKYNNAESKTVINPELPDGKTDEVRNDAVRIFKAVDGFGLSRVDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + + V + EIN PG T +S++P + A G +EL+ ++ +A Sbjct: 304 IENGTNDVVFNEINTMPGFTSISMYPMLWADRGIEKKELVDELINEAFTR 353 >gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] Length = 277 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 118/283 (41%), Positives = 170/283 (60%), Gaps = 16/283 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 AGF V +ID + L +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+LA Sbjct: 2 RTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK ++K++ + G+P S+L + +++ H+++PPYV+KP GSS+GI ++ + Sbjct: 62 SAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVME 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSDF 199 P + + D +++E Y G ELT V+G +L VT+I V + Sbjct: 122 GDRPP-----ELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVV--DGW 174 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KV 257 Y Y KY STH +PA +P DI + A AH +GCRG+SR+D+ +D + Sbjct: 175 YDYAAKYEIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDESRGLDGL 234 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 235 ILLETNTQPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277 >gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 348 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG S E VS+ S + A ++ ++ I + RS L Sbjct: 6 IGIIFGGRSEEHPVSVRSAQEIAKNIDAEKYEPFYIGIARSGAWKLCERPDENWENGSCR 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 DLA VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVLSPDRSVHGLLVLEQGRYETISLDLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V G+ V L++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYTVARGAGIATPNFWTVTANEKVDADLLTYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++ + ++LIE+ V G E+ C ++G+ + +V I++ F Sbjct: 186 RKEELSGAV--DTARQYDSKVLIEEAVVGSEVGCALLGNDLDLTAGEVDRISLSHGFFRI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NST ++PA I + VQ A ++A+GCRG+SR D KV Sbjct: 244 HQESAPESGSENSTAIVPADISAEARSLVQETAKAVYRALGCRGLSRVDMFLQE-DGKVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PGMT S +P M A AG E++ +V Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLAEVIDRLV 337 >gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis] Length = 349 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE EVSL S + L F++ +I +D L Sbjct: 7 IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + +PD+ F +LHG GEDG +Q + EL+ IPY G Sbjct: 67 TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI----SPPYVIKPLKGGSS 138 + SA+ MDK + S GV P++++ R D P +KP + GSS Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIRTRNCKDEIDKFIEKNDFPIFVKPNEAGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--K 196 GI + + + L + ++ + ++I++ + G E+ C V+G+ L V E Sbjct: 187 KGINKVNEPDKLEDAL--TEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVSLN 244 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDF+ Y KY +++ +PA I ++ E+++ A L ++ +GC G++R DF + + Sbjct: 245 SDFFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLS-DNNE 303 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S +P+M G +++E++ ++ A Sbjct: 304 ILLNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLINLA 343 >gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] Length = 326 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ S + S ++ +KV I++ D Sbjct: 5 IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +KPD A+ +HG GE+G++Q ELL IPY+ +L SAL+ +K + Q + Sbjct: 65 SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV + S+LV++ + I P IKP GSS G+ +K + I L Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D +IE Y+DGIEL G L +TE+ V K++F+ + KY+ T Sbjct: 183 QAAFAESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEV-VSKNEFFDFNAKYN-GQVT 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ VQ+L + +GCRGI R D++ K+ LEIN PGMT S Sbjct: 241 EITPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG +E++ ++ED Sbjct: 300 FIPQQARAAGIDMKEIMTDIIED 322 >gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1] gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2] gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1] gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2] gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1] Length = 365 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 152/355 (42%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AV+ GG+SSE +S S +A++ F VS + + Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65 Query: 39 -------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 DR + +V D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ +A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAVKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++V + A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas albilineans] Length = 319 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL+SG AL G +D ++ + D FN+LHG Sbjct: 20 VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVDGIAALLERIRAGAVDRVFNILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GE+G++Q +L L++P+T + +L SAL++DK+R+KQV + G+P I + Sbjct: 80 GDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADADLA 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ + + +++ + ++ +LL+EQ V G E T Sbjct: 140 AAAAELGYPLFVKPSCEGSSVGVFRVLSAVDLAP--VRAFAADYAGELLMEQMVQGEEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD +L I VP D+Y Y KY + ++ ++ P + + ++++LA A A Sbjct: 198 VGILGDIALPSIRI-VPVGDWYDYHAKYIAEDTQYLCP-GLSGEDEVQIRQLALQAFAAA 255 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GC G R D + D + R + +EIN PGMT S+ P+ AA+ G L ++E Sbjct: 256 GCSGWGRVDVMRDRV-RGLQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILEQ 311 >gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN] gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923] gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae] gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923] Length = 384 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 103/364 (28%), Positives = 162/364 (44%), Gaps = 69/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E VS S + L+ F V + + +L PD Sbjct: 20 VAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIANRQ 79 Query: 53 -------------------------------------------LAFNVLHGNFGEDGLVQ 69 + F VLHG +GEDG +Q Sbjct: 80 LPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDGTIQ 139 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLIS 125 +LEL +PY +G+LASA MDK +K++ ++ G+P+ ++ R T+ Q +S Sbjct: 140 GLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLHRQECERLS 199 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 P +KP +GGSS+GI + +P + + H ++++E V+G EL CGV+ Sbjct: 200 LPVFVKPARGGSSIGISRVSSWGQLPSAIAY--ARRHDPKVIVEAAVNGRELECGVLEMP 257 Query: 185 ----ASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A+ V EI V + FY + KY + +PAK+ D+ EV++LA A Sbjct: 258 DGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPAKVDDDVADEVRQLAIQAF 317 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI C+G++R DF EIN PG T S++P++ A + + LL MV+ Sbjct: 318 RAIDCQGLARVDFFLT--DDGPVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATMVDT 375 Query: 296 ASCL 299 A Sbjct: 376 ALAR 379 >gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 340 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 51/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAHLKP 51 + VL GG+S EREVSLSSG A+AL + G++V +D+ S+ + P Sbjct: 3 VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D F LHG+ GE+G +QA+ ++ Sbjct: 63 YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPL 133 I YT SG + S L+MDK SK ++ G+ I+ + + + + P VIKPL Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQELEKTLMLPCVIKPL 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ +++ + + L + + +++LIE+ + G E + G++ +L + EI Sbjct: 183 SCGSSVGVSIVRSQEELGKALDYAKKYE--NKVLIEELIVGREFSVGILNHHALPLIEI- 239 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +PK+ FY Y KY + +T V PA++ +I ++Q A H+ + SR DFL Sbjct: 240 IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLL-KE 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + LE N PGMTP S+ P+ AA G S+ +L ++ Sbjct: 299 DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 146/356 (41%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131 G+LASA+ MDK K + G+ V P + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQAAGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185 P + GSS GI + + + + ++ + ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGAAAPR 256 Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + EI V + FY +E KY + + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S] gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] Length = 370 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI + + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKKELVDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] Length = 374 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ ++ H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 A+P Y +E KY + ++ + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 365 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599] gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599] Length = 350 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 153/344 (44%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE EVSL S + +L ++V + + R + Sbjct: 6 VAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWH 65 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + K D+ F +LHG GEDG VQ +LEL IP+ Sbjct: 66 QSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLK 134 L+SA+ MDK + + G+ S+ V T + + P +KP K Sbjct: 126 VGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAATEPLGFPLYVKPAK 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + ++ H D+++IE+ + G E+ C V+G+ + V E+ Sbjct: 186 AGSSIGITKAYSLSELFFGI--ENALQHDDKVVIEENITGFEVGCAVLGNREVIVGEVDE 243 Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + F+ Y KYS + +PA+I ++ ++++ A +Q GCRG +R D P Sbjct: 244 IELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFARVDMFVTP 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T S +P M AG S++ELL ++ A Sbjct: 304 -DGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346 >gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 358 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL+ + + + R +L++ Sbjct: 10 IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ E+ +P G Sbjct: 70 TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q L + ++ H LL E++V G E+ V+ D + + EI Sbjct: 190 GVAKVHASQEFAPAL--TEAFRHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + +PA++P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG T +S++ + A +G ++ E++ +V+ Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGLAR 353 >gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] Length = 304 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I + Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QVR 299 >gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 349 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + ++ + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203 + L S ++ + ++++IEQ VD E+ C V+G D S + V FY Y Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 380 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 102/361 (28%), Positives = 159/361 (44%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S+E E+SL S + AL+ F+ I +D+S +L Sbjct: 9 VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68 Query: 47 ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 A D+ F VLHG GEDG VQ +LEL Sbjct: 69 LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------------- 122 +PY SG+L SA+ MDK K+++ +P+ P + + R D Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188 Query: 123 -LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180 P +KP GSS+G+ +K I + ++ +++ EQ ++G E+ C Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAV--EHAFEFDLKIVCEQGIEGVREIECS 246 Query: 181 VMGDASLDVT---EIAVPKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+GD + EI V +D FYSY KY + +T +PA + VQ +A A Sbjct: 247 VLGDDDPIASVPGEIVVGHADGFYSYAAKYIDADGATIRIPADLSPAEANAVQLVALRAF 306 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+ G++R D P R ++ EIN PG T +S++P++ +G REL+ ++ Sbjct: 307 RALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIERLIAL 365 Query: 296 A 296 A Sbjct: 366 A 366 >gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099] gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099] Length = 357 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 152/350 (43%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S+E +VS S A++ ++V I + R L Sbjct: 7 VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGAQ 66 Query: 49 ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F VLHG FGEDG VQ E+ ++ Y Sbjct: 67 VPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGG 136 GILASA +MDK +K+++ G+ V S+ V + + + P+ KP + G Sbjct: 127 GCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGLPFFAKPARQG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE--- 191 SS G+ + + ++ + + LIE++VDG E+ C V+ D SL V+ Sbjct: 187 SSFGVSKVHDRDGFEQAV--ETALRYDSKALIEEFVDGREIECSVLERADGSLTVSPPGE 244 Query: 192 -IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I K FY+YE KY V PA +P D+ +A A +A+GC ++R DF Sbjct: 245 IIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFF 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E+N PG T +S++ + A AG + +++ ++E A Sbjct: 305 LRA-DGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALAR 353 >gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae 3841] gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv. viciae 3841] Length = 358 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 165/350 (47%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E +VS+ S AL+ + + + R +L+ Sbjct: 10 IAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG +GEDG VQ E+ +P G Sbjct: 70 TEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAVPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q + L + ++ H LL E++V G E+ V+ DA+ + EI Sbjct: 190 GVAKVHASQEVAPAL--AEAFRHDRTLLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + +PA++P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPAELPQEVETAMRDVAAKAFRAVGCDGMARIDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G ++ E++ +V+ A R Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGMARARR 356 >gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] Length = 319 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 169/307 (55%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GG S ERE+SL+SGK AL +AG+ V ID + + D AF L Sbjct: 11 IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVELIDPAAPTFLERMTGDGWDAAFIAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +LE L IPYT S LAS ++MDK SK + G+PV PS+ R M Sbjct: 71 HGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRADM 130 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ +KP+ GSS GI + K + ++ HG+++++E+ V G Sbjct: 131 LPLEEIVAVVGEQSFVKPVVNGSSYGISLAKDPSEL--ANAIEVAFEHGEKVMVEKRVFG 188 Query: 175 IELTCGVMGDA----SLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E + +GD +L V EI VP+ S+FY E+KY+ H +PA +P D+Y +VQ Sbjct: 189 TECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQE 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH+A+G GISR+D + LE N PGMTP S+ P+ A +AG F EL Sbjct: 249 IACRAHEALGLYGISRTDVIVTEDG--PVILETNNIPGMTPESLVPDEARHAGIPFSELC 306 Query: 290 LWMVEDA 296 +V+ A Sbjct: 307 AELVDLA 313 >gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] Length = 356 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 157/352 (44%), Gaps = 53/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSL SG L + G K +DV Sbjct: 3 IIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129 ++L I YT ALSMDK+ +KQ+ GVP +NR T D+ + P V Sbjct: 123 DILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP GGSS+G+ ++ ++ + S NH D+++IE Y+ G E C ++ +L + Sbjct: 183 IKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI +PK ++YE KY + + P + ++QR A + + +R+DF Sbjct: 243 IEI-IPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDVYARADF 301 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + D K + LE+N PGMTP S+ P+ A G + +L ++E++ R Sbjct: 302 IVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353 >gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] Length = 360 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 371 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+S+E VS S +AL++ + V + + ++ + Sbjct: 4 VAVIFGGVSTEHLVSCRSAFYVINALKELKYDVLPLGITKAGDWLPLLVEPEVLLTEGWE 63 Query: 46 --------LAHLK---------------------PDLAFNVLHGNFGEDGLVQAILELLE 76 H + P++ F +HG EDG +Q L + + Sbjct: 64 QAAYKAWHKKHARGLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTD 123 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLI 124 IPY SG+LASAL M+K+ +KQ+ ++ +PV P +V R + + ++ Sbjct: 124 IPYVGSGVLASALGMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVL 183 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + P +KP GGSS+G + L + S ++ ++L+EQY+ EL V+G+ Sbjct: 184 TYPIFLKPASGGSSVGTFKAGNRSELVAALGEVSKFDR--EILLEQYIPARELEVAVLGN 241 Query: 185 ASLDVTEIAV----PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + FY YE KY ++ S+ LPA +P D+ + + LA A++ +G Sbjct: 242 LQPQAPMVGEILMQADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLG 301 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF D S ++ EIN PG T S++P+ A AG + L+ + A Sbjct: 302 CKGMARVDFFLDRCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALVDQLCRLA 358 >gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 369 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 63/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E VS + + ++ F++ I + + H Sbjct: 7 VAVLFGGRSPEHSVSCVTAAGVMNEIDPNAFRLLPIGITPEGKWRVVHDWKSFSFDRDNM 66 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 PD+ F +LHG +GEDG +Q +L L++ Sbjct: 67 PRIEDNQTEVFVSPSKNGSLIERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMD 126 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPY 128 +P+ G+ +S+ MDK +K V+ + G+P V + T+DS + P Sbjct: 127 VPFVGPGVFSSSAGMDKHFTKMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPA 186 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DA 185 +KP + GSS+GI + L ++ H ++++E +VDG E+ C V+G D Sbjct: 187 FVKPSRAGSSVGISKVSDTSGFKAALDD--AFAHDTKVIVEPFVDGREIECAVLGSVNDR 244 Query: 186 SLDVT----EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 L + I +FY ++ KY +T PA + D+ + V+ +A +A C Sbjct: 245 ELKASSPGEIIVSGDHEFYDFDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDC 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P + +V EIN PG TP S +P M +G +++L+ +++ A Sbjct: 305 TGLTRVDTFVRP-NGEVLVNEINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIA 359 >gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 393 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 157/374 (41%), Gaps = 80/374 (21%) Query: 1 MAVLMGGISSEREV-------------------------------------SLSSGKACA 23 + VL GG S E +V SL +GK Sbjct: 7 VGVLFGGRSGEHDVSLLSAASVINAVDKKKFEVVPIGITKEGKWLTASHAESLLNGKKAE 66 Query: 24 SALED------------AGFKVSQIDV-------------DRSVGLVLAHLKPDLAFNVL 58 L A + + + G + + D+ F VL Sbjct: 67 QQLRAGDPEATPGAAVLAKGEAVLVPPVPQSDRSAIVPFETDAAGHSASSIDVDVIFPVL 126 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q + EL IPY +G+L SA MDK K + + G+P+ + V R Sbjct: 127 HGTFGEDGTIQGLFELANIPYVGAGVLGSAAGMDKDIMKALFKNAGLPIVKHMTVLRSQW 186 Query: 119 DSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +KP GSS+GI + + L +++ ++ +L+IE Sbjct: 187 QREPKKVKKLVESKLKYPVFVKPANLGSSVGISKAHDSKELGPALDEAAKFDR--KLVIE 244 Query: 170 QYVDG-----IELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 Q V G E+ C V+G+ + VP +FY Y KY S +PAK+P Sbjct: 245 QGVGGKKKKAREIECSVLGNDEPKASVPGEIVPIKEFYDYAAKYLDEGSALEIPAKLPKS 304 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 K+VQ LA A QA+ G+ R DFL DP S K++ EIN PG T +S++P++ +G Sbjct: 305 TQKQVQELAIRAFQAVDGSGLGRVDFLIDPKSNKLYVNEINTMPGFTSISMYPKLWEASG 364 Query: 283 YSFRELLLWMVEDA 296 + +L+ ++E A Sbjct: 365 LKYTDLITRLIELA 378 >gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b] Length = 364 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + +L GG S E EVSL S + L+ + + I +D+S + Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66 Query: 44 LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +V P ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 67 VVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140 MDK ++++ G+ L++ S+ P +KP GSS+G Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193 I + + + + +++L+E+++ G E+ V+ + V EI Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244 Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +YSY KY + + ++PA++ + +++++ A + C+G++R DF + Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349 >gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829] gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 317 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S E ++SL SG C AL+ AGF V DV D S LA + D+AF + Sbjct: 11 IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG +Q +LE+L IPYT SG+LASA+ K +K + G+P + Sbjct: 71 HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130 Query: 119 DSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS G+ +++ + + + + G +LIEQ Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDLADAIKEEQ--KTGTHVLIEQA 188 Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G E+T V+G+ +L + EI + FY + K HV+PA++ D+Y Q Sbjct: 189 IVGTEITVPVIGNHHPHALPIVEIVF-NAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQ 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH A+GCRG+SR+DF+ D + + LE N+ PGMT S+ P+ AA+ G F EL Sbjct: 248 ELAEQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPEL 306 Query: 289 LLWMVEDA 296 +VE A Sbjct: 307 CKRLVEYA 314 >gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228] Length = 350 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+ GG S+E E+SL S ++ +A + + + + +D+ Sbjct: 8 IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67 Query: 42 ------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L LK DL F VLHG FGEDG +Q LE L+I Y + +SA+ Sbjct: 68 VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSL 139 MDK KQ+ + +P + N+ ++ + P+ +KP GSS+ Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPK 196 GI +K +S L + + + +L+IE+ + EL V+ + + + + Sbjct: 188 GINQVKDFKSFVKAL--AEGFKYDLKLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +DFY Y+ KY + ++PA + +++ ++ A QAIG G+SR DF D Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG T S++P + G SF E+L +V+ Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343 >gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302] gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341] gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B] Length = 356 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 347 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+ER+VS+ S ++ A+ F V + +S + Sbjct: 6 LVLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K V+ S GVP+ + + + + ++ P +KP GSS+GI Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 ++ + + + + ++LIE V+ E+ G++G+A + T V FY Y Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA I I +E++ A A +AIG G+SR DF V+ E+ Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] Length = 384 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ ++ + ++ ++ P Sbjct: 12 IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVDGEDPRKWNMSEGL 71 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 72 PVVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q + P +KP + GSS G+ ++ + + L + +H ++L+EQ +D E Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + + P FY ++ KY + +++HV PA +P + Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D +V EIN PG TP+S++P+ G S Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 371 YTDLITTLIE 380 >gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] Length = 374 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDLG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ ++ H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 A P Y +E KY + ++ + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401] gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401] Length = 346 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 55/334 (16%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--------------- 51 SL S K A++ + F V + +D+ +L P Sbjct: 2 SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV 61 Query: 52 --------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D+ F ++HG GEDG +Q +L + +P+ S +LASA M Sbjct: 62 PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 121 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK +K+++ G+ + P I + R + + + P +KP GSS+G+ + Sbjct: 122 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 181 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYE 203 ++ + + + ++H ++++EQ + G E+ C V+G+ + + V SDFY+Y+ Sbjct: 182 SEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 239 Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 KY + V+PA I +I +++ +A A+Q +GC G++R D P +V EI Sbjct: 240 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 298 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T +S++P++ +G + +L+ ++E A Sbjct: 299 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 332 >gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 384 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ ++ + ++ ++ P Sbjct: 12 IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVGGEDPRKWNMSEGL 71 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 72 PMVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q + P +KP + GSS G+ ++ + + L + +H ++L+EQ +D E Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + + P FY ++ KY + +++HV PA +P + Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D +V EIN PG TP+S++P+ G S Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 371 YTDLITTLIE 380 >gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii] Length = 343 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 K + + + + + ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 186 KAEELQAAI--EEARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1] Length = 365 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 47 -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V ++V + + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGRYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP FY +E KY S ++ A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571] gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ S + A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FYSY+ KY +++ + PA +P +I V+R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus gasseri ATCC 33323] gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323] Length = 375 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 21 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 80 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I ++V++ A QA C G++R D + Sbjct: 259 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360 >gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 349 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE EVSL S ++ F + + + + +L Sbjct: 5 ILLIFGGQSSEHEVSLKSVTTIYENIDHELFDIYPVGITKEGKWLLYRGAXFNFTENNWQ 64 Query: 49 -------LKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYT 80 L PD+ F ++HG +GEDG +Q + L ++P+ Sbjct: 65 EKGVPCILSPDVTHHGLLLLRDAQDIVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKP 132 G+L+SA+SMDK +K V G+ +LV + + PY +KP Sbjct: 125 GCGVLSSAISMDKSFTKIAVEKTGIRQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L ++ ++L+E+ + G E+ V+G+ L ++ + Sbjct: 185 ANAGSSVGINKVHNKRELEHALRVAA--KEDAKILVEETIIGREVEVAVLGNEELQISGV 242 Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY++ S V+ A++P +I + ++ A ++A+ +G+SR DF Sbjct: 243 GEILAAAEFYDFDAKYNNAESKTVICAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + + EIN PG T +S++P + G S + L+ ++ AS Sbjct: 303 TE-TGDMIFNEINTMPGFTKISMYPMLFEDFGISIKNLITELINLAS 348 >gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 374 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ ++ H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 A P Y +E KY + ++ + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium] Length = 343 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S E VS+ S A+ ++ ++ I + +S Sbjct: 6 IAILFGGCSEEHNVSVKSAAEIANNIDIGKYEPIYIGITQSGVWKTCEKPCIDWDNEHCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ F+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLIMQDKGYQIQRIDVVFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++ + + + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYGVNKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + + + + ++LIEQ V G E+ C V+G++ +V +I + F Sbjct: 186 SADELDSAIDL--ARQYDSKILIEQGVLGYEVGCAVLGNSFDLIVGEVDQIRLQHGIFRI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S N+T +PA++ + + ++ A ++A+GCRG+SR D + ++ Sbjct: 244 HQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG + EL+ ++ Sbjct: 303 LNEVNTMPGFTSYSRYPRMMVSAGITIPELIDHLI 337 >gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 368 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 154/345 (44%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 + +L GG S E EVSL S + L+ + + I +D+S Sbjct: 11 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 70 Query: 43 -----------GLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ L D + F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 71 VVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140 MDK ++++ G+ L++ S+ P +KP GSS+G Sbjct: 131 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 190 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193 I + + + + +++L+E+++ G E+ V+ + V EI Sbjct: 191 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 248 Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +YSY KY + + ++PA++ + +++++ A + C+G++R DF + Sbjct: 249 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 308 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 309 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 353 >gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] Length = 361 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 162/350 (46%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLVL------------ 46 +AV+ GG S+E +VS+ S ++ + ++V I + + + Sbjct: 6 IAVVFGGKSNEHDVSVVSAAHVIRSINENSDRYEVICIGITKKGHWLRYMGSTEDIENGK 65 Query: 47 ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 +++K D+ F VLHG GEDG +Q I ++ E Sbjct: 66 WTDHPDNLACIFSPDPVHRGFIQLEEDGSYSNIKVDVVFPVLHGKNGEDGTIQGIFQMAE 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPY 128 +P+ +++SA MDK + ++ + G+ I + + + + P Sbjct: 126 VPFVGCDLISSACCMDKDVTHTILEAHGIKTAKWISMIYRDLAELDEKCALMEKKLGYPM 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI + + + +++ H ++++EQ V G+EL C VMG+ + Sbjct: 186 YVKPANCGSSVGISKAHDLEELKAGIK--AAFTHDQKVVVEQEVKGVELECAVMGNDTPF 243 Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + + ++FY Y+ KY++ S +PA + + +EV+ +A A +A+GC G++R Sbjct: 244 ASTVGQIAAANEFYDYDAKYNNAASKTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V EIN PG T +S++P++ +AG S+ E +++ A Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTKISMYPKLMEHAGISYAEQEDRLIKLA 352 >gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 374 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 156/360 (43%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + + V I + + L +L+ Sbjct: 10 VALLCGGRSSEHPISLITAVGVLGAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F ++HG FGEDG +Q +LE Sbjct: 70 AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 L E+PY G+ ASA+ MDK K S G+ V +V + + Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYEVVTDRQWTHEREESLKRITALG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 P +KP + GSS GI + K + + + + H ++++E + G E+ CGV+ Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAI--EEARRHDAKIIVEAGIVGREIECGVLDGH 247 Query: 185 -----ASLDVTEIAVPKSD--FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236 + EI V D FY ++ KY S +S PA +P D+ + ++ LA A Sbjct: 248 HGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR+DF + P ++ E+N PG TP+S++ M G S+ EL+ ++ A Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366 >gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] Length = 331 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSERE++L S ASAL+ A + ++ ID+ D Sbjct: 6 IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H D A ++HG GE+G +Q L+++ IPY+ + +S ++ DK+ +K+ V Sbjct: 66 SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+P+ R + + P +KP GSS G+ +K + I + Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ D++LIE+ + G E+ CG++ +TEI V K +F+ YE KY++ S Sbjct: 184 AEAFTESDEILIEECIQGREMGCGMLIAKGREYIFPITEI-VSKKEFFDYEAKYTAGCSD 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA I +I E+ RL LA++A CRG+ R DF+ P K + +EIN PGM+ S Sbjct: 243 EITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTP-EGKPYLIEINSIPGMSGGS 301 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 I P+ AG + EL ++ED Sbjct: 302 IVPKQVREAGMTLGELYDLIIED 324 >gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118] gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118] Length = 378 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ +LV + +KP + GS Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + + I Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 245 Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P+ DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 246 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 306 KND-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349 >gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] Length = 363 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 57/348 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 ++ GG S+E ++S+ + + + ++V I + +S V + Sbjct: 5 LVYGGKSAEHDISILTAFSIIKEVYYDYYEVEPIYITKSGQWVKGAIVKQANEVKDSDAL 64 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + + F VLHG GEDG VQ + E++ +PY Sbjct: 65 KLTISDSSKFATDENQNSEGILVQPSDLKEENAVIFPVLHGPNGEDGTVQGLFEVIGMPY 124 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LASA MDK+ SKQ+ G+P P + V + + + P I Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKESVFKHCEGTLFYPMYI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + + + ++++EQ ++ E+ ++G+ + ++ Sbjct: 185 KPANLGSSVGISKAENRDELIEAIELAL--RYDRRVVVEQGIEAREIEVAILGNDDIHIS 242 Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V DFY YE KY + +PA +P D+ ++ A A QA+ G+SR DF Sbjct: 243 VPGELVKTVDFYDYESKYLNNEVVLQIPALVPEDVNTRLREYAVRAFQALDGSGLSRCDF 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++F E+N PG T S++P + G ++ +L+ +++ A Sbjct: 303 FLT-SNDELFINEVNTMPGFTQFSMYPSLWKNTGLNYGDLVEELIQLA 349 >gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 368 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 160/352 (45%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S+E +VS S A++ ++V I + R +L Sbjct: 7 VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWLLQPSSEAGVDGAGAP 66 Query: 47 -----------------------AHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIP 78 A ++PD + F VLHG FGEDG VQ E+ ++ Sbjct: 67 VSGDGVEVALLPGGKGRLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVA 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLK 134 Y GILASA +MDK +K+++ G+ V S+ V R + + P+ KP + Sbjct: 127 YVGCGILASAAAMDKDVAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPAR 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE- 191 GSS G+ +K + ++ + ++LIE++V+G E+ C V+ D SL V+ Sbjct: 187 QGSSFGVSKVKDRDGFEQAV--ETALRYDSKVLIEEFVEGREIECSVLQRADGSLTVSLP 244 Query: 192 ---IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 I K FY+YE KY + V PA +P + + + +A A +A+GC ++R D Sbjct: 245 GEIIPAGKHGFYTYEAKYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVD 304 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 F + E+N PG T +S++ + A G + +++ ++E A Sbjct: 305 FFLRA-DGSLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIEHALAR 355 >gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM 7109] gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 362 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 163/355 (45%), Gaps = 63/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S+E VS S A L+ F V + + V Sbjct: 9 VAVVYGGQSTEHSVSCISAGAIIDNLDPERFTVVPVGITNGGAWVPGATDTAQLRASGRE 68 Query: 47 --------AHLKP--------------------------DLAFNVLHGNFGEDGLVQAIL 72 H++P D+ F VLHG GEDG +Q + Sbjct: 69 LPTVADHGEHIQPMLGAAGEATEFRFVTGDRAGDVFATADVIFPVLHGANGEDGTIQGLF 128 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYV 129 +LL Y +G+LASA MDK +K++ G+P P ++++ T + L+ P Sbjct: 129 DLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEVVLHGRTELTDHERELLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187 +KP +GGSS+GI + + +P + +++S H +++IE + G E+ CGV+ D +L Sbjct: 189 VKPARGGSSIGISKVDSWRDLPAAIEEAAS--HDPKVIIEAMITGPEVECGVLEREDGTL 246 Query: 188 DVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + A+ + FY ++ KY + +PA + + + VQ+LA ++A+GC Sbjct: 247 VASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLDEETTRRVQQLAIETYRALGCT 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF EIN PG TP+S++P+M G S+ +LL +V A Sbjct: 307 GLARVDFFVTDAG--PVLNEINTMPGFTPISMYPQMFLADGVSYADLLTTLVSGA 359 >gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 354 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 151/351 (43%), Gaps = 54/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG SSE VSL S + +L +++ I + + Sbjct: 6 LAVIFGGKSSEYPVSLHSAASLIRSLHKDKYELIFIGISKDGEWFAYDGDVDAIEHDTWM 65 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D F VLHG GEDG +Q + EL IPY Sbjct: 66 DGNITPCVLSCSTAQKGFLKLKEDGSYETLPVDCIFPVLHGKNGEDGTIQGLFELSGIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIK 131 ++SA+ MDK + V+ + G+P P + V +++ + P IK Sbjct: 126 VGCDHMSSAICMDKEMAHIVMENAGIPCAPYLCVYEDEHLDYRHIYEEAKAKLGLPIFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---D 188 P GSS GI I + + + ++++E ++G E+ C VMG+ L Sbjct: 186 PANAGSSFGIHKIASFDDFEESMKDAFYHDGRGKVILETTIEGFEIGCAVMGNKELFAGS 245 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V EI + F+ YE KY ++S PA+I ++++E + LA A++A+ C+G++R D Sbjct: 246 VDEIETA-APFFDYEGKYQMVDSHIYCPARISKELFEEARSLALKAYRAMNCKGMTRVDM 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P + + E+N PG T S +P M AG F +LL ++ A Sbjct: 305 FVTPQ-QSIVMNEVNTIPGFTDTSRYPTMMKEAGIEFGDLLDKLIAFALTR 354 >gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] Length = 346 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 162/339 (47%), Gaps = 47/339 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAH------------- 48 VL GG SSE VS S + + L + ++ + +D L H Sbjct: 7 VLCGGQSSEHIVSRMSCTSVLNNLNHDKYDITLVGIDLDGKWYRLNHDQDDLSLDSWLDN 66 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + D+AF VLHG +GEDG +Q + EL +IPY + +L S++SMDK+ +K Sbjct: 67 SVEVENVFELLKEHDVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDKIYTK 126 Query: 98 QVVSSCGVPVCPSILVNRF--------TMDSQHL----------ISPPYVIKPLKGGSSL 139 +++ + +P S V + T D + + I P IK + GSSL Sbjct: 127 KILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRSGSSL 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197 G + + L ++ + +++E+ +D IEL V+G+ + V+ + +P Sbjct: 187 GCYRCDNREDLIGKL--EAAAKYDRHIVVEENIDCIELETAVLGNDDVIVSRVGQIMPHG 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY++E KY S +PA + I ++++ A A +A+ G+SR DF D + + Sbjct: 245 EFYTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKKTNNI 304 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T +S++P++ G S+ +LL ++E A Sbjct: 305 YLNEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIELA 343 >gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8] gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8] gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus] Length = 319 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 33/320 (10%) Query: 3 VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40 ++ GG+S E EVSL S + AL K + + + Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+ + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V+ Sbjct: 64 PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + GVPV P + V + P + +KP GSS+GI +++ Q + L ++ Sbjct: 124 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 180 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + ++ ++E+ + EL GV+G+ + V E+ ++ FY YE KY+ + ++P Sbjct: 181 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 239 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ LA A++ +G RG++R DF +++ E+N PG TP S++P Sbjct: 240 APLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGELYLNELNTIPGFTPTSMYPR 297 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G ++ ELL +VE A Sbjct: 298 LFEAGGVAYPELLRRLVELA 317 >gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 364 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 154/345 (44%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 + +L GG S E EVSL S + L+ + + I +D+S Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66 Query: 43 -----------GLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ L D + F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 67 VVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140 MDK ++++ G+ L++ S+ P +KP GSS+G Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193 I + + + + +++L+E+++ G E+ V+ + V EI Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244 Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +YSY KY + + ++PA++ + +++++ A + C+G++R DF + Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349 >gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris MG1363] gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 349 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203 + L S ++ + ++++IEQ VD E+ C V+G D S + V FY Y Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine Ligase (Ddl) From Thermus Caldophilus: A Basis For The Substrate-Induced Conformational Changes Length = 322 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 33/320 (10%) Query: 3 VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40 ++ GG+S E EVSL S + AL K + + + Sbjct: 8 LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 66 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+ + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V+ Sbjct: 67 PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + GVPV P + V + P + +KP GSS+GI +++ Q + L ++ Sbjct: 127 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 183 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + ++ ++E+ + EL GV+G+ + V E+ ++ FY YE KY+ + ++P Sbjct: 184 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 242 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ LA A++ +G RG++R DF +++ E+N PG TP S++P Sbjct: 243 APLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGELYLNELNTIPGFTPTSMYPR 300 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G ++ ELL +VE A Sbjct: 301 LFEAGGVAYPELLRRLVELA 320 >gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 146/356 (41%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131 G+LASA+ MDK K + G+ V P + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQATGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185 P + GSS GI + + + + ++ + ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGAAAPR 256 Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + EI V + FY +E KY + + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] Length = 365 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 151/354 (42%), Gaps = 62/354 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------------- 38 AV+ GG+SSE +S S +A++ F VS + + Sbjct: 7 AVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQL 66 Query: 39 ------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIPY 79 DR + +V D + F VLHG FGEDG +Q +LE+ + Y Sbjct: 67 PTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVRY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIK 131 G+ ASA MDK +K ++S GV V P ++V + + P +K Sbjct: 127 VGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 187 PARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAPR 244 Query: 192 IAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP FY +E KY S ++ A + + VQ +A A Q +GC G Sbjct: 245 ASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEG 304 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 305 LARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] Length = 366 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 193 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 309 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351 >gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1] gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] Length = 360 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ +I Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +YSYE KY+ +++ + PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] Length = 354 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 53/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG SSE VSL S + L + + + + + + Sbjct: 6 LAVIFGGQSSEYAVSLHSAGSLIRKLHKERYDLLLVGITKDGKWYIYDGDVESIEHDTWL 65 Query: 47 ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + D F VLHG GEDG +Q + EL IP Sbjct: 66 QDASTCPCVLSCSTANHGFLKLCSDGSYEEIPVDCIFPVLHGKNGEDGTIQGLFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130 Y G ++S++ MDK + V+ + VP P + V +++ + P I Sbjct: 126 YVGCGHMSSSICMDKEMTHIVLENAKVPCAPYLCVYEEKDMDYEAVYQEAKAKLGLPIFI 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS GI + + L + + ++++E ++G E+ C VMG+ L Sbjct: 186 KPANAGSSYGISKLDSFEGFEAALKDAFYHDGKGKVILETTIEGFEIGCAVMGNRELFAG 245 Query: 191 EIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + ++ F+ YE KY ++S PA+I ++ +E + LA A++A+ C+G++R D Sbjct: 246 NVDEIETSLPFFDYEGKYQMVDSHIYCPARISKELIEEARTLALRAYKALNCKGMTRVDM 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++ E+N PG T S +P M AG +F +L+ +V+ A Sbjct: 306 FKTP-DDQILINEVNTIPGFTDTSRYPTMMKEAGIAFSDLIDRLVDLA 352 >gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L ++ + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR +F + ++ ++ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDK-GEISLNKL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLA 335 >gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 342 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG+S E +SL S + A +L+ ++ + + R +L Sbjct: 3 IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 63 PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V + ++ P +KP + GSS G+ + Sbjct: 123 SSALCMDKSLAYVVARSAGIATPNFWTVAAKELPDAD-LTYPVFVKPARSGSSFGVSKVT 181 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + +P + +S + ++LIEQ V G E+ C V+G+ +V IA+ F Sbjct: 182 QADDLPSAVEVAS--QYDSKVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHGFFRI 239 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + E + S NST ++PA IP V+ A ++A+GC G++R D V Sbjct: 240 HQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVDLFLTE-DGAVV 298 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PG+T S +P M A AG S E++ +V A Sbjct: 299 LNEVNTLPGLTSYSRYPRMMAAAGLSMGEVIDRVVSLALT 338 >gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] Length = 368 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VRAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKYFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V V + Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVISSGVGE 259 Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 349 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG SSE EVSL S A L+ + V +I + R + Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 H + D+ F VLHG GEDG +Q + E+ IPY Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLK 134 + AS++ +DK + ++V G V SI ++ T + + + P +KP + Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---E 191 GSS+GI + + + ++ ++++E+ ++G E+ C ++G+ L V E Sbjct: 186 EGSSIGITKAENHSDLMGGI--EAALKLDGKVVLEENIEGFEVGCAILGNDDLIVGTVDE 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I VP + F+ + KY+ NS LPA+I D+ + ++ + ++A+GC G+SR D D Sbjct: 244 IEVP-NGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ + E+N PG T S FP M +AG ++R++L +++ Sbjct: 303 K-NHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLID 344 >gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1] Length = 368 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VGAVFSPDATEKCVLIERERGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V V + Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259 Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 368 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VGAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V V + Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259 Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++ ++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] Length = 361 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 66 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I ++V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346 >gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 375 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 21 IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 80 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I + V++ A QA C G++R D + Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 360 >gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 164/349 (46%), Gaps = 54/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG+S ER VSLS+G A AL G +V+ +D+ V A L Sbjct: 3 IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 DL F LHG+ GEDG VQA +L Sbjct: 63 HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIK 131 + IPYT SG L SA++MDK +K++V+ V V+ D L+ P V+K Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVSYTADDIDGLVETARLPLVVK 181 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P+ GSS+G+ + + + L + + G + ++EQYV G EL ++ D +L E Sbjct: 182 PVASGSSIGVSIAHTAEELRTALTEGLAL--GGRTVLEQYVKGRELQVAILEDKALPSIE 239 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 I +PK FY YE KY + V PA I + ++++ A ++ +G SR+DF+ D Sbjct: 240 I-IPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFILD 298 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + ++LEIN PGMTP S+ P+ AA G + L +V+ + R Sbjct: 299 A-DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346 >gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 354 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 VL GG SSE VS S + ++ ++V+ I + + Sbjct: 7 VVLFGGQSSEHIVSCMSVVNVINHIDREKYEVALIGITEEGRWIKTDSVEDIETGTWKNG 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 LK D+ F VLHG GEDG VQ +LEL IPY G Sbjct: 67 TVSAVISPDATMGGIILLDGEKTEVLKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +L+SA+SMDK+ +K +V GV + V R + + S P +KP Sbjct: 127 VLSSAVSMDKLYTKIIVDDLGVTQAAYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNA 186 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS G+ + + + L +++ H ++L+E+ + G E+ C V G +L V Sbjct: 187 GSSKGVSRAEDRKELMEALTEAAV--HDRKILVEEMIVGREIECAVFGGGNLPAEASGVG 244 Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY + +S V+ +P + V+ A QA+ G++R DF Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVDPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + AG + EL+ ++E A Sbjct: 304 KEDGSVVFNEINTMPGFTAISMYPMLWEAAGMNKDELVGRLMEHA 348 >gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 382 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 12 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 72 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ +LV + +KP + GS Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 191 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + + I Sbjct: 192 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 249 Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P+ DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 250 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 309 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 310 END-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 353 >gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] Length = 345 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 162/339 (47%), Gaps = 47/339 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 ++ GG S+E +S S + + + ++ +++ + + D Sbjct: 6 IICGGQSTEHIISRMSCTSVLKNINKEKYDITLAGIEKDGTWYILNQTQDDLVNDSWLEG 65 Query: 53 ---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + + VLHG +GEDG +Q +LEL E+PY +L S+++MDK+ +K Sbjct: 66 AVKVEDVYGLLRQQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTK 125 Query: 98 QVVSSCGVPVCPSILVNRF------------------TMDSQHLISPPYVIKPLKGGSSL 139 +++ + G+P S+ V + + + P IK GSS+ Sbjct: 126 KILETVGIPQVKSLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197 G + +++ + L +++ ++ +++IE+ VD IEL V+G+ V+ + +P Sbjct: 186 GCYRVDEEKELMPRLEEAAQYDR--KIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHG 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY++E KY S +PA + I +E++ A +AI G+SR DF D + KV Sbjct: 244 VFYTFESKYEDEESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKV 303 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T +S++P++ A G ++ +L+ ++E A Sbjct: 304 YLNEINTMPGFTKISMYPQLMADFGITYSDLIDKLIELA 342 >gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens] Length = 265 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 9/268 (3%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 SG AL G D L D F LHG +GEDG VQ LELL Sbjct: 1 MSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHGRYGEDGTVQGALELLG 60 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLK 134 IPYT G++AS+++MDK+ +K++ G+P LV T + + P ++KP + Sbjct: 61 IPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETRAALQALGAPMIVKPSR 120 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190 GS++G+ + + + +S + ++L E++++G E TC V+G +L V Sbjct: 121 EGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETTCPVLGTGEGAHALPVI 178 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I P+ + Y Y+ KY + ++ + P+ +P + E++R+ A + +GCRG SR+D + Sbjct: 179 RIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAFRTLGCRGWSRADIMI 237 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMA 278 RK F LEIN PGMT S+ P A Sbjct: 238 RASDRKPFLLEINTSPGMTGHSLVPMSA 265 >gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047] Length = 297 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 153/300 (51%), Gaps = 10/300 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNVLH 59 MGG ++ER++SL SGKA SAL AG ID S+ L+ D FN++H Sbjct: 1 MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G + +L + +P T S + ASAL+M+K + K + +P +++ + Sbjct: 61 GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTARFQVLSAESDW 120 Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 Q + P ++KP GSS+G+ + + + + ++ + ++ E ++ G E Sbjct: 121 QQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAV--QYDQTVIAESWITGGEY 178 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++ L ++ + +FY Y+ KY ++ +++P + + + +Q +A A + Sbjct: 179 TVGIIKGQPLPGIKLETAR-EFYDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIALRAFDS 237 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG R D + D + LE+N PGMT S+ P AA G SF L+L ++ A+ Sbjct: 238 LGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQILSTAN 297 >gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 350 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG + E +VS +S + + L+ ++V + + R+ V Sbjct: 8 VAVVFGGRNGEYDVSCASAMSVLTHLDRDRYEVVPVRITRAGAWVVGTDTDDPAALDAER 67 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 LA + D+ F V+HG +GEDG +Q +LELL +PY Sbjct: 68 LTALTPEPGGERERRPGDGLGEAILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGS 137 +G+LASA MDK +K ++ + G+PV +++ + + + P +KP + GS Sbjct: 128 NGVLASATGMDKATTKTLLRAAGLPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL---DVTEI 192 SLG+ + + + + + ++L+E+ V G E+ V+ D +L EI Sbjct: 188 SLGVTRVGDWSELEAAVKTAREF--DTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEI 245 Query: 193 AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V ++ F+ Y+ KY ++ +PA +P+ I ++ LA +A+GC G+ R DF Sbjct: 246 RVADTERFFDYDTKYG-GDAVFDIPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLR 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + E+N PG T S +P++ G + ELL ++ A Sbjct: 305 G-GTEPVVNEVNTLPGFTAHSQYPQIWRATGLEYPELLDSLIRTALA 350 >gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec] gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 367 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + +L GG S+E +S S AL+ + + V + +D Sbjct: 10 LVLLFGGRSTEHSISCVSAGGVLRALDRSRYDVIPVGIDTEGRWAVLPDDSPALAPVGTD 69 Query: 40 -------------------------RSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73 L L P D+ F +LHG FGEDG +Q +LE Sbjct: 70 LPIVDASAGLAVTLPPSPSAAPVVVHDPSAALRDLGPVDVVFPLLHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130 + +PY SG+ ASA +MDK K ++++ G+PV P ++ S+ + P + Sbjct: 130 MAGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYAVLRPGQALSEPDRERLGLPVFV 189 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183 KP +GGSS+GI + + L + + + L+E V G E+ CGV+ Sbjct: 190 KPARGGSSIGISRVDAWADLDTALKTARA--SDPKTLVEAAVVGREIECGVLDSLDGSGP 247 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 AS+ + FY +E KY S + +PA++P ++ + V+ A A +A+ C G+ Sbjct: 248 QASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPGELTERVRAAAVAAFEALDCAGL 307 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R D P ++ E+N PG TP+S++P M A +G + L+ +V+ A Sbjct: 308 ARVDMFVTPS-GEIVLNEVNTMPGFTPMSMYPRMWAASGIDYAALVDRLVQLA 359 >gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 163/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GGI SER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + V P I + + Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P VIKP GSS+GI ++ + + + ++N+ + ++IE++ Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ L +I K++FY Y KY ++ ++ P+ + +E++++ Sbjct: 183 LKGTEYTVSILNKKVLPPIKIIT-KNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A ++GC+G R D + D K + LEIN PGMT S+ P + SF L+L Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILK 300 Query: 292 MVE 294 +++ Sbjct: 301 ILK 303 >gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] Length = 370 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 60/351 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P P++ V + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188 KP GSS+GI Q + + + ++ + ++++EQ V E+ GV+G+ + Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVIAREIEMGVLGNDTPICS 244 Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V +P+ FY Y+ KY N+ ++P ++ +I +++ A A + G+ R Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASGLVR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +DF ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVDLA 354 >gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286] Length = 327 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 35/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE VS S S L+ + + ++ + R V A Sbjct: 5 IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64 Query: 48 --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 ++K D AF ++HG GEDG +Q ++L IPY+ G++AS+L+M+K Sbjct: 65 FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124 Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ V S+ +N+ T D + P +KP GGSS +K + + + Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKSIEQLQKAID 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ +++IE ++ G E+TCG + +TE+ P ++F++YE KY Sbjct: 185 I--AFGETPEVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTP-NEFFNYEAKYE-GQV 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+IP ++ E+QRL + +G +GI R DF+ + LE+N PGMT Sbjct: 241 EEITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFII--SDNMPYLLEVNTVPGMTQT 298 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ A AG + ++L ++E+ Sbjct: 299 SFIPQQVAAAGLNITDVLTEIIEN 322 >gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 55/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VS SG A AL G +V +DV Sbjct: 20 IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79 Query: 39 ---------DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72 + + A K D+ F LHG GE+G VQA Sbjct: 80 VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129 +L I YT + L A++MDK +K ++ G+P I + R + I P V Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D+++IE+Y+ G E + GVM D L V Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EIA + FY ++ KY++ ++ PA +P + + +Q+ A +A+G SR DFL Sbjct: 258 IEIAPIR-GFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 D R +F LE N PGMTP S+ P+ A G S+ +L ++ Sbjct: 317 LDESGR-IFCLEANTLPGMTPTSLLPQEEAVLGMSYDDLCEEII 359 >gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] Length = 329 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 94/320 (29%), Positives = 160/320 (50%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A+L GG +ER VSL S + L D ++ I++ D S+ Sbjct: 4 VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++K DL + +LHG+ EDG +Q E+L IPYT +++SA++ +K K + S Sbjct: 64 TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123 Query: 104 GVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +P+ PS ++ + + P +KP K GSS G + + ++ Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQL--AGAIEHAF 181 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + D++++E ++ G E + GV+ L +TEI VP ++F+ ++ KY S + P Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEI-VPHNEFFDFKAKYE-NQSQEITP 239 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A++ + +VQ L ++A+GCRGI R D++ + F+LE N PGM+ SI P+ Sbjct: 240 ARLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQ 297 Query: 277 MAAYAGYSFRELLLWMVEDA 296 A G+S ELL V++A Sbjct: 298 QARAHGWSITELLDAAVDEA 317 >gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] Length = 348 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 360 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNAAEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY +++ + PA +P +I V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] Length = 348 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + +L GG S+EREVS+ S ++ A+ F V + Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65 Query: 39 ------DRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D S+ + + + D + F +LHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + ++ +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + + ++LIEQ V E+ G++G+ + T + FY Y Sbjct: 186 ESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEVIKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY + +PA I I +++ A A +AIG G+SR DF ++ E+ Sbjct: 244 QAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDFFL-AEDGNLYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLSYSDLIEELVSLA 336 >gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris] gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris] gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 364 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + +L GG S E EVSL S + L+ + + I +D+S + Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66 Query: 44 LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +V P ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 67 VVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140 MDK ++++ G+ L++ S+ P +KP GSS+G Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193 I + + + + +++L+E+++ G E+ V+ + V EI Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244 Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +YSY KY + + ++PA++ + +++++ A + C+G++R DF + Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349 >gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016] gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 378 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P ++V + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 316 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 160/310 (51%), Gaps = 21/310 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVLHG 60 VL GG S EREVSL+SGKA A GF V ++ + V ++ D+ F LHG Sbjct: 5 VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 ++GEDG +QA L+ +IPYT SG A L+M+K+ SK G+P + N F Sbjct: 65 SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124 Query: 119 --DSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + ++ VIKP + GS+LG+ VI + + +SS + ++ Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLASS--YDSLIIA 182 Query: 169 EQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 E+Y+ G E+T V D + + EI VPK+ YSY+ KY+ NS + +PA++ I K Sbjct: 183 ERYISGKEITVAVWDDGKPQAFPIIEI-VPKNSLYSYKAKYTPGNSAYFVPAQLEDSIAK 241 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 + Q A +AH ++GC SR D D + LE+N PG+T S+ P+ A G+ F Sbjct: 242 KAQEAALMAHISLGCELYSRVDMRLDTQGN-PYVLEVNTVPGLTSTSLVPKAAKAIGWDF 300 Query: 286 RELLLWMVED 295 + ++++ Sbjct: 301 DRFVKELIQN 310 >gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] Length = 291 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 166/294 (56%), Gaps = 5/294 (1%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL-AFNVLHGNFGEDG 66 +S+EREVSL S +AL G++V++IDV + + + L+ + P FN L G +GEDG Sbjct: 1 MSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDG 60 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N I Sbjct: 61 CIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILR 120 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 PYVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL ++ Sbjct: 121 PYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKV 177 Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + EI + K FY Y+ KYS + H++P ++P++ ++ +A ++ CRG R Sbjct: 178 VGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCR 237 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 238 LECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKCD 291 >gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] Length = 319 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GGISSEREVSL SG+ AL G +V D L D AF LHG Sbjct: 12 VVVLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAYDAAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L + +PYT G+ ASA++MDK +K + + G+ V + + D+ Sbjct: 72 TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQY 171 + + V+KP GSS+G+ + +D L +++ ++L+E+Y Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDAAEVLVEEY 191 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ +L V EI P+ Y ++ KY + + PAK+P K + Sbjct: 192 IHGREFTVAILDGKALPVIEICAPEGS-YDFQNKYYTDVVRYECPAKLPEASAKALAAAC 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG SR D + LEIN PGMTP S+ P A G S+ +L L Sbjct: 251 EKAFAVLGCRGWSRVDA-LERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCLR 309 Query: 292 MVEDASCL 299 ++ A Sbjct: 310 VLGLARTD 317 >gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT 5713] gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 378 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ +LV + +KP + GS Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI ++ ++ L +++ ++L+E+ + E+ C V+G+ + + I Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 245 Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P+ DFY Y K+ + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 246 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 306 END-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349 >gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium] Length = 333 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 51/332 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V I + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++F E+N PG T S++P + G Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPTLMGKYGLE 331 >gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] Length = 350 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E VS++S +A AL+ + V I + R+ + + Sbjct: 5 IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64 Query: 50 -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F VLHG GEDG +Q +L++++ P+ + + Sbjct: 65 KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKP 132 L SA+ MDK+ K + S G P + + + D + + P IKP Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ + + + L ++S + ++++IE+ + EL CGV+G+ + + Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAAS--YDNRIIIEEGIIARELECGVLGNDIPKASVV 242 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +SDFY Y+ KY +S +PA++P I +++Q++A A I RG+SR DF + Sbjct: 243 GEITFESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDFFY 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++K+F EIN PG T S++PE+ G F EL+ ++E A Sbjct: 303 IEGTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348 >gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8] gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG] gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8] gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG] gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000] gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017] gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141] gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312] gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645] gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346] gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630] gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62] gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF] Length = 356 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis] gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 PEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 342 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 147/338 (43%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ I + + L Sbjct: 6 VGIIFGGASEEHPVSVKSAQEVARHLDTGKYEPFWIGITKDGAWKLGDGPGESWEAGRTV 65 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + D+ VLHG GEDG +Q +LEL IPY + +S Sbjct: 66 VLSPDRSVPGLLVLEDGKYETIGLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 AL MDK + V +S G+ V D + P +KP + GSS G+ + Sbjct: 126 ALCMDKSLAYVVAASAGIATPKFRTV--LAGDDAGAFTYPVFVKPARSGSSFGVSKVSGR 183 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYE 203 + + + ++ + ++LIE+ V G E+ C V+G+ + +V IA+ F ++ Sbjct: 184 EELAAAISTAA--QYDAKVLIEEAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQ 241 Query: 204 LKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S NST ++PA +P + VQ+ A ++A+GC+G++R D V Sbjct: 242 EEQPESGSENSTPIVPADVPAETRARVQQTAKAIYRALGCKGLARVDMFLT-DDGTVVLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PG+T S +P M A AG L+ +V A Sbjct: 301 EVNTLPGLTSYSRYPRMMAAAGVPLSALIDRLVSLAMT 338 >gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112] gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112] Length = 382 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 11 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 71 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P ++V + + +KP K GS Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 190 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 191 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 248 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 249 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 308 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 309 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 350 >gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] Length = 356 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 YLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 389 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 147/356 (41%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 VL GG S E +S + A++ F V + + + VLA PD Sbjct: 29 VLFGGRSGEHPISCITAAGVLRAIDRDRFDVVAVGITQGGKWVLASTDPDEVVTSGDDLP 88 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + +LHG FGEDG VQ +LEL ++ Sbjct: 89 HVADNGTEVLLPFASGDNEVRVIRDGVLESVGPVDVVLPLLHGPFGEDGTVQGMLELADL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL------ISPPYV 129 Y G+L SA+ MDK K V G+PV P V ++ D + + P Sbjct: 149 RYVGVGVLGSAVGMDKHYMKLVFEGHGLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVF 208 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSSLGI + + D + + H +++IE + G E+ C V+G Sbjct: 209 VKPTRAGSSLGISKVSDVGDL--DRAMAEALKHDPKVIIEAGIVGREIECAVLGGHGDTP 266 Query: 190 TEIAVPK--------SDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++P +FY +E KY ++ PA++ V+ +A A A+G Sbjct: 267 ARASLPGEITMTGSAHEFYDFEAKYLDDASAQLSCPAELDETTTATVREVAVRAFDAVGG 326 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+SR D V EIN PG TP+S++P M +G S+ EL+ +++ A Sbjct: 327 EGLSRVDVFVQE-DGAVVVNEINTMPGFTPISMYPRMWERSGVSYTELISELIDLA 381 >gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] Length = 326 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 97/323 (30%), Positives = 164/323 (50%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 ++++ GG SSE VSL S + S ++ + + + +++ D Sbjct: 6 VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDGL+Q ELL IPY+ G+LASAL+ DK Q + Sbjct: 66 SFEWNGEVITFDFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCNQYL 125 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + +D I P IKP GGSS G+ + K++ I +L+ Sbjct: 126 KGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPAILK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ ++LIE ++DG E+TCG + +TE+ V ++F+ Y+ KY+ Sbjct: 186 --AFHESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEV-VTHNEFFDYDAKYN-GQVE 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ K VQ L + IGC GI R DF+ + + LE+N PGMTP S Sbjct: 242 EITPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITDK-KVINLLEVNTTPGMTPTS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 FIPQQVRAAGLEIQDVMTDIIEN 323 >gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] Length = 353 Score = 288 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 152/343 (44%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + VL GG SSE VS S ++ +++ I + + Sbjct: 6 VVVLFGGQSSEHVVSCMSAANVIDRIDQEKYELLLIGITEEGRWIRTECVEDIRSGSWRD 65 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG VQ +LEL +IPY Sbjct: 66 GTVSAVISPDATEKCVILMDGESAERVPVDVVFPVLHGLYGEDGTVQGLLELAKIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134 G+LASA+SMDK+ +K +V + GV V R + + S P IKP Sbjct: 126 GVLASAVSMDKLFTKIIVDNLGVRQAEYEPVTREQLAHMEAVTARIEGHFSYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + + LL+++ H ++L+E+ + G E+ C V G + V V Sbjct: 186 AGSSRGVSKAENREELEAGLLEAA--RHDRKILVEEAIVGREVECAVFGGGAEAVVASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY +E KY + S V ++P D + +++ A QA+ G++R DF Sbjct: 244 GEILAAAEFYDFEAKYYNEESRTVTDPELPGDAAERIRQTAVSVFQAVDGYGLARVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + EIN PG T +S++P + G S EL+ ++ Sbjct: 304 TG-DGEVVFNEINTLPGFTAISMYPMLWEARGVSKEELVEKLI 345 >gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 288 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron VPI-5482] gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] Length = 324 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ ++L+E +++G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] Length = 342 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S + M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYTRMVAAAGITLPALIDSLITLA 339 >gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] Length = 378 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ + ++A + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P ++V + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] Length = 344 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 147/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGI 84 + D+AF VLHG GEDG +Q + L IPY I Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDI 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 QSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F Sbjct: 186 NGTEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFR 243 Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 IHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 VLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 341 >gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS] gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus pyogenes M49 591] gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180] gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005] gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429] gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096] gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131] gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131] Length = 348 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] Length = 351 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV GG S+E +S+ +G L G V I + + G V+ Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L D+ F LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ G V P +++ + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189 S+ + I + + L + +++ + ++ GIE++CGV+ +L Sbjct: 184 SVSVYKITNREQLKEKLAL--IFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232] gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str. Manfredo] gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232] gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 348 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] Length = 356 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEEIGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101] gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101] Length = 323 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 159/322 (49%), Gaps = 34/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG L+ + +I + D Sbjct: 4 IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDGL+QA EL+ +P + SAL+ +K V+ Sbjct: 64 SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ T + + P +KP K GSS GI +K + +P + Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELP--IAI 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE ++DG E++ GV+ L +TEI V +DF+ YE KY S Sbjct: 182 EVAYKEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEI-VSDNDFFDYEAKYE-GKSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ ++V A A++ + +G SRS+F+ + + + LE+N PG+T S Sbjct: 240 EITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 + P+ A AG S +L +E Sbjct: 298 LIPQQAKAAGISLEDLFTNAIE 319 >gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] Length = 361 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 7 IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1] gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1] gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 348 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Corynebacterium glutamicum ATCC 13032] gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC 13032] Length = 360 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 155/349 (44%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS S A + L+ + V + + V+ P Sbjct: 11 VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG VQ + L +IP Sbjct: 71 MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135 G+LASA MDK +K+++++ G+PV +++ T ++L+ P +KP +G Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + + H +++++E + G E+ CGV+ + Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA--HDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248 Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + + +Q LA + QA+ C G++R D Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M +G ++ ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355 >gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 314 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ V L L ++ F LH Sbjct: 11 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 71 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+KP GS++GI ++K+ + + + + ++L+E+Y+D Sbjct: 131 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRV--FKVESRILVEEYLD 188 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM ++ V +I P S Y + KY+ + +++PA I ++ E+Q +A Sbjct: 189 GEEFTVPVMNGKAMPVIQI-CPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C G+ R D + + LE N PGMT S+ P+ AA G SF +L ++ Sbjct: 248 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 306 Query: 294 EDASCLR 300 E A + Sbjct: 307 EGAGLNK 313 >gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394] gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394] Length = 348 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 322 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE VSL S + S ++ + + ++ +DR+ Sbjct: 5 IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + I P IKP GGSS G+ +K ++ I + Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE Y+ G E+TCG +TE+ V ++F+ Y+ KY+ Sbjct: 183 EKAFHESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEV-VTDNEFFDYDAKYN-GQVQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D + V+ L + +GC GI R D++ KV LEIN PGMT S Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] Length = 361 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 375 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E EVS + A++ ++V I +D+S Sbjct: 11 VAVIFGGQSNEHEVSCLTAAGVLGAIDQTRYRVHGIGIDKSGLWHRYSVDEIRALQIVDG 70 Query: 45 ------------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 + A D+AF ++HG + EDG VQ LE+ Sbjct: 71 VMPSIGADHPLAELFRDAGGVHLATLDEDRLTAREPIDVAFPLMHGAYAEDGTVQGKLEM 130 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125 L + Y G+ +SAL MDK + V+ + GVP + V R + Sbjct: 131 LGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQLG 190 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP +GGSS+GI + S+ ++ ++L+EQ V G E+ CG++G Sbjct: 191 YPVFVKPARGGSSVGISRVTGPDSL--AAAIDAARLVDPKVLVEQAVVGAREVECGILGG 248 Query: 185 -----ASLDVTEIAVP-KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237 + EI + + FY Y KY + PA + + + VQ LA A Sbjct: 249 DGTAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFTA 308 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C G++R D P +V EIN PG T S++P M +G + EL+ ++ A Sbjct: 309 LDCEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELIDQLIALA 366 >gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026] Length = 361 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPQME 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 355 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 46/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E VSL + K+ +A++ + V I Sbjct: 6 IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T + + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + ++ + ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F E+N PG TP S+FP + A S+ E++ + Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEEL 337 >gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] Length = 358 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AV+ GG S+E VS + A S L+ +++ I + + + Sbjct: 7 VAVIYGGKSTEHSVSCVTAGAIMSHLDPERYEIIPIAITKEGTWTIGVTEGLEIKDGKLP 66 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 H D+ F LHG GEDG VQ + E+ IPY Sbjct: 67 EVEEADELTVSLNPRGDGQIHNVTRGTLHADIDVVFPALHGVNGEDGTVQGVFEMAGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGG 136 +G+++SA+ MDK ++++ + G+PV +++ T + + P +KP +GG Sbjct: 127 VGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTDAEKDHLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ + +P + +++++ D++++E + G E+ GV+ + ++ K Sbjct: 187 SSIGVSKVNTWDELPAAIAEAAAF--DDKVIVEAELVGAEVEVGVLEYPTGELVASVPAK 244 Query: 197 --------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA K +Q LA QA+ C G+SR DF Sbjct: 245 LNGTEDSDEGFYGFDTKYLDNTVTATIPAPFDEATTKALQDLAVETFQALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 EIN PG TP+S++P++ +G S+ ELL ++ A Sbjct: 305 FVTEQG--PMINEINTLPGFTPISMYPQVFLASGVSYPELLDTLIATALAK 353 >gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta] Length = 342 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202 + + + ++ + ++LIEQ + G E+ C VMG+ +V +I + F + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + ++ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLA 339 >gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 350 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 44/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52 + VL GG S+E ++S+ + A ++ V+ + +DR KPD Sbjct: 3 IIVLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNF 62 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F LHG GEDG +Q + E L + Y +G+LAS+ M Sbjct: 63 QLDQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGM 122 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGII 142 DK+ SK +++ G+P P + + + + ++ P +KP GSS+G+ Sbjct: 123 DKIVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVGVS 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV--PKSDF 199 + L + ++ + ++L+E V + E+ ++G+ + V+ F Sbjct: 183 --EAIDDASLLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQGF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y+YE KY + ++PA I ++Q A A A+ G+SR+DF + +++ Sbjct: 241 YNYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYI 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S++P + +G S+ +LL +++ Sbjct: 300 NEVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQ 334 >gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] Length = 378 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG SSE +VS S AL+ + VS + Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P ++V + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI + + L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346 >gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 171/304 (56%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GG S+ERE+SL+SGK AL++AG+ V ID + +A D+AF + Sbjct: 11 VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117 HG GEDG +Q +E L IPYT SG+LASA DK SK + + G+P+ P + + Sbjct: 71 HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130 Query: 118 MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D H++ +KP GSS GI ++ + +P + ++ + +GD++L+E+ ++G Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAIAKAFA--YGDKVLVEKCIEG 188 Query: 175 IELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T GV G+ +L + EI P+ +FY ++KY H +PA+I + Y Q L Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELL 289 A AH+A+GC GISRSDF+ LE N PGMT S++P+ + +F ++ Sbjct: 249 ACAAHKALGCLGISRSDFIVSEDG--PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVC 306 Query: 290 LWMV 293 ++ Sbjct: 307 DSLI 310 >gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] Length = 333 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A++ GG SSE +VSL S + S + + V +D+ DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D A+ +HG GE+GL+Q ELL IPY+ SG+L AL+ +K Q + Sbjct: 68 SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V SILV R D + I P+ +KP GSS G+ +K + L Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 ++ D+++IE Y+ G E++ G L TE+ V ++F+ Y+ KY+ Sbjct: 188 RN--AFMESDEVMIESYLKGTEISIGCYKTREKSVVLPATEV-VTSNEFFDYDAKYN-GQ 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPG 267 + PA++ + + V+++ + + C GI R D++ K+ LE+N PG Sbjct: 244 VQEITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTPG 303 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MT S P+ AG + E+L +VE+ Sbjct: 304 MTATSFIPQQIRAAGLNITEVLTEIVEN 331 >gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 354 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG SSE VSL S + + +++ I + + Sbjct: 6 LAIIFGGKSSEYPVSLHSAGSLIHKINKERYELIFIGISKDGKWYAYDGDVEGIEHDTWL 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ D F +LHG GEDG +Q + EL IP Sbjct: 66 QDKHCTPCVLSSSEGCKGFLKLHADGTFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130 Y G ++SA+ MDK + V+ G+ P + V D++ + P I Sbjct: 126 YVGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFI 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187 KP GSS GI ++ + + + ++++E ++G E+ C VMG+ L Sbjct: 186 KPANAGSSFGIHKMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGCAVMGNKELFAG 245 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V EI + F+ YE KY ++S PA+I +++ + + +A A+ A+ C+G++R D Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVD 304 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P K+ E+N PG T S +P M AG F EL+ +V A Sbjct: 305 MFVTP-DEKIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDRLVALA 352 >gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878] Length = 345 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG E +S+ S + A L+ ++ I + +S L Sbjct: 6 IGIIFGGCYEEHPISVKSVREVAKNLDTEKYEPFYIGITKSGAWKLCDGPDEGWENSSRS 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D +LHG GEDG +Q ++E+ IPY I + Sbjct: 66 VVLSPDRSVHGLLVLEQGRYETISLDAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V S G+ +V ++ P +KP + GSS G+ + + Sbjct: 126 SALCMDKSLTYIVARSAGIATPNFWIVTADDDIDPGQLTYPVFVKPARSGSSFGVSKVSR 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202 ++ +P + ++ + ++LIE+ V E+ C V+G+ + +V +A+ F + Sbjct: 186 EEELPSAVK--TAREYDSKVLIEEAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIH 243 Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + S NST ++PA IP + VQ A + ++A+GCRG++R D +V Sbjct: 244 QESNPEQGSENSTFIVPADIPDESRARVQETAKVIYRALGCRGLARVDMFL-KEDGQVVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PGMT S +P M A AG E++ MV A Sbjct: 303 NEVNTLPGMTSYSRYPRMMAAAGMPLGEVIDRMVSLALA 341 >gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC 15703] gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 378 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S + AL+ F+ + + + ++ P Sbjct: 6 IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D F VLHG +GEDG +Q + E Sbjct: 66 PTVEKTPGAKDVVLEVALGQDGFFAREDDGTMTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ + D Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKTDADAIMA 185 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S+ + P +KP + GSS G+ ++ + + L + H ++L+EQ +D E Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASRHDWRILVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + + P FY ++ KY ++HV PA +P + Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D KV EIN PG T +S++P+ G Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVTK-DGKVMVNEINTMPGFTSISMYPKAWEATGVR 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLITKLIE 374 >gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] Length = 293 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 9/293 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFG 63 MGGISSERE+SL SG +L+ ++ ++ +D ++ + D AF LHG FG Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS 120 EDG VQ++LE +IPY+ G L+SA+ MDK SK++ + G+P I V D Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSS+ +IK+ I + Q +++IEQY+ G E T Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGL--EVDTEVMIEQYLPGEECTSF 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ I + +F+ +E KYSS N + + ++ + + A C Sbjct: 179 ILDGEVFPTVSIK-SEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R R DF+ + + LE+N PG+T S+ P AA G S+ +LL ++ Sbjct: 238 RAYVRVDFII--SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLI 288 >gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750] gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 348 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] Length = 314 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 16/306 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVLHG 60 V GG S ER VSL SGKA A AL AG +V D+ +G+V A DL F LHG Sbjct: 5 VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +QA+LE IPYT SG + +MDK ++ V G+PV P + R Sbjct: 65 GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L +KP GS++G+ ++ + + + + + + D+L+ E+++ G Sbjct: 125 PDLESLMAREGGHLALKPCCCGSTVGVSLVHRPEDLREA--RDLALKYDDRLVAERFIPG 182 Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ELT V + +L EI P FY Y KY+S + ++ PA + + V L Sbjct: 183 RELTVAVFEEGGRPRALPAIEIR-PHEGFYDYRNKYTSGATEYLCPAPLEEALAARVGSL 241 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+A+GCR SR DF + F LE+N PGMT S+ P+ A G+SF ++ Sbjct: 242 AEAAHRALGCRVYSRVDFRLSE-EGEPFLLEVNTAPGMTGTSLVPKAGAAVGWSFPQVTD 300 Query: 291 WMVEDA 296 +V + Sbjct: 301 RIVRAS 306 >gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7] Length = 343 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 154/340 (45%), Gaps = 51/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GGIS+ER+VSL SG AL+ G +V +DV Sbjct: 3 IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62 Query: 39 ------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 + L+PD + F LHG GE+G +QA +L Sbjct: 63 VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I YT + ++SA+ M+K SK + ++ GVP I + + + P V+K Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGIRLKKGETPDVK-VPYPCVVKACC 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+++ D+ ++ + ++++IEQY+ G E + GV+ + + EIA Sbjct: 182 GGSSVGVVMANNDEEYAA--ALEEAFKYDEEVVIEQYIKGREFSVGVVDGKAYPIIEIAP 239 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + ++ PA++ + +Q A A + + + +R DF+ D Sbjct: 240 IH-GFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDEKE 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE N PGMTP S+ P+ A G + +L +++ Sbjct: 299 D-FYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337 >gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 362 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 59/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG SSE VS S + L+ A ++V + + +S VL+ Sbjct: 8 VAVVFGGRSSEHAVSCVSAGSILGHLDPARYEVVPVGITQSGSWVLSDADAQSLRFADRA 67 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F VLHG +GEDG +Q +LE+ + Sbjct: 68 LPSVPEGPTDLALLPGAELVSVSSDAAGSVLGSVDVVFPVLHGPYGEDGTLQGLLEMAGV 127 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPL 133 PY +G+LASA MDK +K+++++ G+PV ++ + + H + P +KP Sbjct: 128 PYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFHVLRQRETEVPPEVLHRLGLPLFVKPA 187 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191 +GGSS+GI + ++P + ++ W +++IE V G E+ GV+ D ++ + Sbjct: 188 RGGSSIGITRVTDLAALPAAIAEARRW--DPKVIIEAAVIGREVEIGVLERPDGTVHASA 245 Query: 192 IAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 IA + FY +E KY + + +PA + + + LA A A +G++R Sbjct: 246 IAEIEMAADAEHAFYDFETKYLDDRAQYTVPADLTEEQTSAIAELAVRAFHAFDGQGLAR 305 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF E+N PG T S++P M A +G + ELL +++ A Sbjct: 306 VDFFQTAEG--PVINEVNTMPGFTSTSMYPRMWAESGIGYAELLSLLIDTALAR 357 >gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58] gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58] Length = 379 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 145/356 (40%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDVLP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131 G+LASA+ MDK K + G+ V + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVSFQAAGLEVGAWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185 P + GSS GI + + + + ++ + ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGSAAPR 256 Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + EI V + FY +E KY + + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] Length = 311 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ V L L ++ F LH Sbjct: 8 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 68 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+KP GS++GI ++K+ + + + + ++L+E+Y+D Sbjct: 128 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRV--FKVESRILVEEYLD 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM ++ V +I P S Y + KY+ + +++PA I ++ E+Q +A Sbjct: 186 GEEFTVPVMNGKAMPVIQI-CPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C G+ R D + + LE N PGMT S+ P+ AA G SF +L ++ Sbjct: 245 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 303 Query: 294 EDASCLR 300 E A + Sbjct: 304 EGAGLNK 310 >gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 375 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 164/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68 Query: 37 DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DV R L P D+ F ++HGN GEDG +Q +L LL PY SG Sbjct: 69 DVARQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 +L SA+S DK +K+++ GV L+ T++ + +KP GS Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193 S+GI ++ D ++ + +++L+E+ ++G EL V+G+ + V I Sbjct: 189 SVGIHKVETSDDY--DEAIRDAFRYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246 Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP D FY+Y+ K+ + P IP + KE+ ++A +++A+G +G++R DFL Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDIPEALSKELTKMALDSYRALGLKGMARIDFLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + E+N PG T +S++P++ A +G S+REL+ +++ A+ Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLAN 351 >gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478] Length = 370 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 10 VAVVFGGRSNEHAISCVSAGSILRNLDPQRFEVIAIGITPQGSWVLTDGNPDALAITNRQ 69 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 70 LPAVSSESGTLLALPADPQWGGRLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129 L +PY +G+LASA MDK +K+++++ G+PV P ++ ++D + P Sbjct: 130 LAGVPYVGAGVLASAAGMDKEFTKKLLTADGLPVGPHAVLRPSRPALSLDECERLGLPAY 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+G+ + +P + + + H ++++E V+G EL CGV+ V Sbjct: 190 VKPARGGSSIGVSRVSSWDELPAAV--AEARRHDPKVIVEAAVNGRELECGVLEFPDGTV 247 Query: 190 -----TEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 EI V + FY + KY + +PAK+ D+ V+ LA A AI Sbjct: 248 QASTLGEIRVAGVRGREDAFYDFATKYLDDAAELDVPAKVDDDVADAVRDLAIRAFHAID 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 308 CQGLARVDFFLTEEG--PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 365 >gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] Length = 342 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 156/337 (46%), Gaps = 45/337 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAHL 49 ++ GG S+E VS S + + + + + + S + Sbjct: 5 LVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWLEGAT 64 Query: 50 K----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D+ F VLHG FGEDG +Q +LE+ ++PY ++AS +MDK+ +K++ Sbjct: 65 KITDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKL 124 Query: 100 VSSCGVPVCPSILVNRF------------------TMDSQHLISPPYVIKPLKGGSSLGI 141 +P PS+ V + M+ + P +K + GSS+G Sbjct: 125 FDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSSVGC 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + L ++++++ +++E+ ++ EL C V+G+ + + + +P +F Sbjct: 185 YKVNSLTELLPRLHEAATYDRH--VVVEKAINATELECAVIGNDDISASRVGQILPHGEF 242 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y+YE KY S +PA++ I +++ A A +A+ G++R DF +D + V+ Sbjct: 243 YTYESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P++ AG L+ +++ A Sbjct: 303 NEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 >gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] Length = 348 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] Length = 328 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 156/325 (48%), Gaps = 32/325 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41 +A+L GG S E EVS+ S + A+ L +KV I D+D++ Sbjct: 4 IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L +K D AF +HG GEDG +Q ++L IPY SA++M+K +K +V Sbjct: 64 SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123 Query: 101 SS-CGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+ S+ + + + P IKP GGSS+G+ + ++P L Sbjct: 124 NGIEGLHTAKSMQLFQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQAL- 182 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211 +++ Q+L+E+++ G E + G++ L TEI + +F+ YE KY+ + Sbjct: 183 -EKAFHEDHQILVEEFIKGREFSIGIVRLHGELKVLPATEI-ISSKEFFDYEAKYTDGVT 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA + + K + R+ + + C G++R DF+ S+ +++EIN PG T Sbjct: 241 QEITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQTVN 300 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+ P+ AG ++ ++E A Sbjct: 301 SLIPQQVRAAGMDIKDFYSALIEGA 325 >gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] Length = 351 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + VL GG S E +VSL S + +++ + + I V RS L Sbjct: 12 ILVLFGGNSPEYDVSLKSAYSVINSINKDLYDIKLIGVSRSGDFYLYEGDIEKIRNDTWH 71 Query: 49 -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D AF +LHG GEDG +Q +LEL IP Sbjct: 72 LDKNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQGLLELGGIPI 131 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGG 136 G+L+SAL MDK R+ ++V S G+ V S+L+N+ D + P +KPLK G Sbjct: 132 IGCGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIEYLGFPIFVKPLKAG 191 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS GI ++ + + + + ++ + D++++E+ +DG E+ C V+G+ + E+ + Sbjct: 192 SSFGITKVEDKKDLFKAVDK--AFEYDDKVVLEENIDGFEVGCAVLGNEKPIIGEVDEIE 249 Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F+ Y KY+ S +PA+I + K ++ A ++ + C+ +R D Sbjct: 250 LSKGFFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKILDCKDFARIDMFITK-D 308 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + + E+N PG T S FP M G F E++ ++ A Sbjct: 309 RDIVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIVNKIISLA 350 >gi|741411|prf||2007289B D-Ala D-Ala ligase Length = 348 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 351 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV GG S+E +S+ +G L G V I + + G V+ Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L D+AF LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ G V P +++ + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189 S+ + I + + L + +++ + ++ GIE++CGV+ +L Sbjct: 184 SVSVYKITNREQLKEKLAL--IFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928] gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 346 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 144/335 (42%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E +S+ S + A L+ + ++ I + R L Sbjct: 6 IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ DL VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 S L +DK + V+ + G+ + + + P +KP + GSS G+ + Sbjct: 126 TSVLCIDKTLTYLVIQNEGIATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201 + + + + ++LIE+ V G E+ C V+G +V +A+ F Sbjct: 186 GKDELSGAI--EEARLYDAKVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALTHGFFKI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S N+T ++PA IP +Q A L ++A+GCRG+SR DF V Sbjct: 244 HQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M A AG+ E++ +V Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337 >gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG S E EVSL+S + + + + I + + Sbjct: 6 IAIIFGGCSPEYEVSLNSASSVIKHINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWY 65 Query: 45 VLAHLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 P D AF VLHG GEDG VQ +L+L IP+ Sbjct: 66 QEKGCNPVAFSQSPSIHGFYEFSEESSSITYVDAAFPVLHGRNGEDGTVQGMLKLAGIPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLK 134 G+L+SA+ MDK + ++ S GV V SI ++ + ++ + P +KP + Sbjct: 126 VGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSISADKAMLLKDILNKAETLRYPVFVKPAR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS GI + + ++ ++ + +++IE+ +DG E+ C ++G+ +L + E+ Sbjct: 186 AGSSFGISRVIDRAELEKAIIN--AFEYDSKIVIEENIDGFEVGCAILGNDNLVIGEVDE 243 Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + S + Y KY+ S +PA+I + ++ A + + A+ C G +R D P Sbjct: 244 IELQSGIFDYNEKYTLKTSKIHMPARIDTVTAERIKDTARILYNALCCTGFARVDMFLTP 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ + E+N PG T S +P M G SF ++ ++ A Sbjct: 304 K-GEIVFNEVNTIPGFTAHSRYPNMLRGVGLSFASIVERLIRMA 346 >gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R] gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R] Length = 360 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS S A + L+ + V + + V+ P Sbjct: 11 VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG VQ + L +IP Sbjct: 71 MPEVEHREEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135 G+LASA MDK +K+++++ G+P+ +++ T ++L+ P +KP +G Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPIGREVILRDRTELTEAEKNLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + + H +++++E + G E+ CGV+ + Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA--HDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248 Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + + +Q LA + QA+ C G++R D Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M +G ++ ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355 >gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] Length = 355 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E +SL + K+ +A++ + V I Sbjct: 6 IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T + + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + ++ + ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA + +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A S+ E++ + + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFKLA 341 >gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 366 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364 >gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] Length = 311 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AVLMGG+S E ++S +G A AL G+ +++ + S V L + ++ F LH Sbjct: 8 VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAEVVFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PSILVNRF 116 G +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V GV + P L N Sbjct: 68 GKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGI 127 Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ + P V+KP GS++G+ ++ + + + L + + ++L E Y+D Sbjct: 128 DTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFA--IESRILAEAYLD 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T V+ +L + +I P S Y + KY+S + +++PA +P E+ R+A L Sbjct: 186 GKEFTIAVLNGKALPIIQI-CPHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMAIL 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A C G+ R DF D F LE N PGMT S+ P+ AA G F L ++ Sbjct: 245 GYEAAECSGVVRFDFRTDKR-GTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENIL 303 Query: 294 EDA 296 A Sbjct: 304 LKA 306 >gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 375 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 162/342 (47%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50 + ++ GG SSE EVS+ S ++ F V + + D VL + K Sbjct: 21 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRRVLDNPKME 80 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V RF + + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + ++ + L + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY + ST +PAK+P I ++V++ A QA C G++R D + + Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEA 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360 >gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9301] gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301] Length = 355 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40 + ++ GG S+E EVS+SS K A + F V +++ Sbjct: 9 IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + D+ F +LHG GEDG + ++ + P Sbjct: 69 EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GI+ SAL MDK+ K + S+ +P ++ ++ + + + P +K Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI +K + I L L +W ++LIE+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVKNESEILLAL--EKAWGIDPRILIEEGLEVREIECGIIGNSKLITSE 246 Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +SD+Y Y+ KY S N ++PA+I I E++ +A + +A+ G +R DF Sbjct: 247 IGEVNYESDWYDYDSKYHSNN-KIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G +L+ +V+ Sbjct: 306 LEKSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350 >gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270] gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 348 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 6 LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65 Query: 34 ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++ Sbjct: 66 MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +++ ++ P +KP GSS+GI Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + + + ++LIEQ V E+ G++G+ + T + DFY Y Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+ Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEVLVTLA 336 >gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 346 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG E VS+ S + A L+ ++V I + ++ +L Sbjct: 6 VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ DL F VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 SAL MDK + V G+ +V + P V+KP + GSS G+ + Sbjct: 126 TSALCMDKSLTYLVAQHAGITTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKVT 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 ++ + + ++ + ++LIE+ + G E+ C ++G+ + +V +I V + F Sbjct: 186 HEEELQTAI--DTARQYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFRI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NST +PA I L+ VQ A ++A+G +G++R DF + Sbjct: 244 HQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFL-KEDGTLV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+ PGMT S +P M A AG +L+ MV Sbjct: 303 LNEVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337 >gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA] gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG SSE VS S ++ + + + + Sbjct: 6 VAVIFGGQSSEHIVSCMSAVNVIEHIDSTRYNIVLVGITEEGHWIKTESLEDVKSGAWRD 65 Query: 42 -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 G + +K D+ F +LHG +GEDG +Q +LEL IPY Sbjct: 66 GKVWAVLPPDATKKCILLMDGDNVEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134 G+LASA+SMDK+ +K +VS G+ V R + + P IKP Sbjct: 126 GVLASAVSMDKLYTKIIVSDLGIRQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS GI Q + LL+++ H ++L+E+ + G E+ C V G S + V Sbjct: 186 AGSSRGISKAGNRQELEAGLLEAA--RHDRKILVEETIVGREVECAVFGGGSHGIEASGV 243 Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V +P ++V+R A +A+ G++R DF Sbjct: 244 GEILAAAEFYDFDAKYFNEESRTVTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +V + EIN PG T +S++P + G +L+ ++ Sbjct: 304 -KDNGEVVFNEINTMPGFTAISMYPMLWEARGIGKDQLVGMLL 345 >gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii] Length = 306 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 15/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SEREVS + ++ +AL+ G +V ++DV V A +A N++HG Sbjct: 9 IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 FGEDG +QAILE IPYT +G+ +S ++ DK +SK+ + GVP S L++ Sbjct: 67 TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRSQNYLLDGSQ- 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 IS P V KP + GSS+G+ + + + + + G L+E++V+G ELT Sbjct: 126 --PLDISIPLVSKPPREGSSVGVNICRTEAEWVSAI--EEAKKCGTSTLVEEFVEGKELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLA 234 G++GD L + I P FY KY + + PA + + VQ A A Sbjct: 182 IGILGDQVLPIIHIE-PVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ G R D + + F LEIN PGMT S+ P+ A G F +L + ++E Sbjct: 241 FKSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIE 299 Query: 295 DASCLR 300 + R Sbjct: 300 LSLAAR 305 >gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] Length = 310 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 147/301 (48%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG L +V +D S + D FN+LHG Sbjct: 11 VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNS-NWLEQLDGVDFVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ +L L +P + SG+L +AL MDK+RSK + G+PV + ++ D Sbjct: 70 GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVL-ASDTDF 128 Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + +I +KP GSS+G+ + + + +S + + E+ + G E T Sbjct: 129 EAVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSAS--EYQGPVFAERRIVGEEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + FY Y KY S ++ + P + + E+ LA A +AI Sbjct: 187 VAILGDRALPAIRLQ-AHEIFYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAI 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C R DF+ D + + LE N PGMT S+ P A AG S + LL ++E + Sbjct: 246 DCAVWGRVDFMVDQQ-GQPYILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIELSLA 304 Query: 299 L 299 Sbjct: 305 R 305 >gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + VL GG+S ER +SL SG +ALE G+ V D+ LA L+ DL F LH Sbjct: 8 ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q++LEL I Y S L SA+ +K + +++ S + + + + Sbjct: 68 GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLL-SNTITMPRWKTIT-SEEE 125 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKP GSS+G+ + + + + L++E+Y+ G ELT Sbjct: 126 LEGWKHFPAVIKPANEGSSIGVYICDTFEELQ--NKTTKVLKEYKTLILEEYIKGRELTI 183 Query: 180 GVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ V + PK FY YE KY++ + ++PA I + +E+++L+ Sbjct: 184 SIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRIFT 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCR +R D + + ++LE+N PG+T +S P A AG F EL+ +V++A Sbjct: 244 ALGCRHFARIDGILKE--NQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEA 301 >gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442] gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442] Length = 294 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 152/295 (51%), Gaps = 7/295 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG SSERE+SL SG A +AL+ G D + L AFN+LHG +GE Sbjct: 1 MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHGTYGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122 DG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T + Sbjct: 61 DGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDAVEE 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP GSS+G++ +K + + + +++ E+++ G E +C V+ Sbjct: 121 KLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYSCPVL 178 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241 L I +P ++FY YE KY+ ++ + P + ++ LA QAIG Sbjct: 179 NGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAE 237 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 238 SCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291 >gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1] gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1] Length = 279 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 143/257 (55%), Gaps = 14/257 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ +LHG GEDG VQ +LELL +PY +G+LASA MDK+ K + + G+P Sbjct: 12 FDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNY 71 Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 + + T ++ + + P +KP GSS+GI + + + L ++ ++ Sbjct: 72 VWYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFD 131 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +++IEQ V E+ GV+G+ + V +PK DFY Y+ KY ++ ++PA+I Sbjct: 132 R--KIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEI 189 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P D+Y++++R+A + +A+ C G+ R+DF ++ E+N PG TP S+FP + Sbjct: 190 PADVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWK 248 Query: 280 YAGYSFRELLLWMVEDA 296 ++G + EL+ +V+ A Sbjct: 249 HSGVEYPELIERLVKLA 265 >gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] Length = 378 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S + AL+ F+ + + + ++ P Sbjct: 6 IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D F VLHG +GEDG +Q + E Sbjct: 66 PTVEKTPGAKDVVLEVALGQDGFFAREDDGTLTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ + D Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKANADAIMA 185 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 S+ + P +KP + GSS G+ ++ + + L + +H ++L+EQ +D E Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASHHDWRILVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + + P FY ++ KY ++HV PA +P + Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D KV EIN PG T +S++P+ G Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVTK-DGKVMVNEINTMPGFTSISMYPKAWEATGVR 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLITMLIE 374 >gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1] gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1] Length = 353 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 50/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG SSE VSL S + L+ + + I + + Sbjct: 5 IAILFGGHSSEYSVSLESAYSVLCHLDHDKYNIYMIGITKDGKWYHFDGDILDIQNDTWW 64 Query: 45 ----------------VLAHLK--------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 L +K D F +LHG GEDG VQ ++ L IP Sbjct: 65 QHPLHEVTISPDPTKHALIEMKTDHFILVHIDAIFPILHGKNGEDGTVQGLIALSGIPLI 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKG 135 + +SAL MDK R+ Q+V+ G+ V S ++ + ++ +S P +KP+K Sbjct: 125 GCSVASSALCMDKERAHQIVNHAGIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKA 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS GI + I + ++ + +++LIE+ ++G E+ C VMG L + + Sbjct: 185 GSSYGITKVTHLDEIEKAI--EFAFTYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEI 242 Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + F+ + KY+ +S +PA+I I K +Q A + ++A+GC+ +R D P Sbjct: 243 ELSQGFFDFTEKYTLKSSQIHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTP- 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + E+N PG T S FP M GYSF +L ++E Sbjct: 302 ENEIVFNEVNTIPGFTSHSRFPSMLQGIGYSFENILDKLIE 342 >gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 355 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40 + ++ GG S+E +VS+SS K +A + F V +++ Sbjct: 9 IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + D+ F +LHG GEDG + +L+ P Sbjct: 69 EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----------NRFTMDSQHLISPPYVIK 131 GIL SAL MDK+ K + S+ +P +++ N+ ++ ++ P +K Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + ++ L +W ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINKSALLKAL--EKAWEIDARILVEEGLETREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I + SD+Y Y+ KY+S N + PAKI I K+++ +A + + + G +R DF Sbjct: 247 IGEVEYGSDWYDYDSKYNSNNKITI-PAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+F EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350 >gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A] Length = 351 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 51/340 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52 GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 2 YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F VLHG GEDG +Q +E + +PY +G+LAS Sbjct: 62 AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 A +MDK+ +K ++ + G+P P + V R + + P +KP GSS Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPK 196 +GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T V Sbjct: 182 VGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKD 239 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF + Sbjct: 240 VAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NE 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E+N PG T S++P + G + +L+ +++ A Sbjct: 299 LFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338 >gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] Length = 354 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 53/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVG-- 43 + VL GG+S ER+VSL SG L + G + +DV DR G Sbjct: 3 IIVLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGL 62 Query: 44 -------------LVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EISKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129 + L I YT L LSM+K+ +KQ+ + GVP + T D+ + P V Sbjct: 123 DNLGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G+ + ++ + +S ++ D+++IE ++ G E CG++ +L + Sbjct: 183 VKPCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI VPK + Y KY + ++ + P + + + +QR A +A+ SR+DF Sbjct: 243 VEI-VPKDGLFDYANKYQAGGASEICPPVSLDEETQELIQRAGERAFEALRMDVYSRADF 301 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + LE+N PGMT S+ P+ A AGY + EL +++++ R Sbjct: 302 IVSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQESIKAR 353 >gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] Length = 355 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + ++ GG S+E +SL + K+ +A++ + V I + Sbjct: 6 IGIVYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWAKGEQIKSEIKDQNEL 65 Query: 39 -------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D S L K DL F VLHG GEDG +Q LE+++I Y + +L+SA M Sbjct: 66 RFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGFLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P +T + + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVNDNLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + ++ + +++IEQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGIEEALKF--DKRIVIEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISTT 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I ++Y E +++A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRAISGSGLVRADFFYTK-EGEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A S+ E++ + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYPEVIEELFRLA 341 >gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] Length = 360 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A++ GG SSE +VS+ S +A++ + F+ + V R Sbjct: 6 LALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAP 65 Query: 42 VGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + VL +P F +LHG +GEDG +Q + E+ ++PY SG+LAS+L Sbjct: 66 LRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLC 125 Query: 91 MDKMRSKQVVSSCG--VPVCPSILVNRFTMDSQHLI----------SPPYVIKPLKGGSS 138 MDK+ K+ V++ +PV P I V+ + + P +KP GSS Sbjct: 126 MDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSS 185 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEIA 193 +G+ + D LD + + Q++IE+ +D E+ V GD EI Sbjct: 186 VGVS--RADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +PK ++Y+YE KY +++ +P ++P +Q LA A +A C G++R DFL + Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S + + E+N PG T +S++P++ AG S+ EL+ +V+ Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVD 344 >gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 52 --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 K + + + + + ++LIE+ V G E+ C ++G+ + +V +I + F Sbjct: 186 KAEELQAAI--EDARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + + S N+ +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338 >gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424] gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424] Length = 355 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E VSL + K+ +A+ + V I Sbjct: 6 IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L + K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + + + P +KP GSS+GI Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 ++ + + ++ + ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEKQLIKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y E + +A A +AI G+ R+DF + K+ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTK-EGKI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A ++ E++ + + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEIIEELFDLA 341 >gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 167/342 (48%), Gaps = 51/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG+S+E EVSL S A ++ + + + + + + + Sbjct: 8 VIFGGMSNEYEVSLKSAAAAIENMDLSKYNLMMLGITQEGKWLRFFGDVEMIRNHTWLTD 67 Query: 46 ----------------LAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L L P D+ F +LHG FGEDG +Q +LEL IP+ Sbjct: 68 KSCVEAFISPSREQKGLIELSPEGYKVTEVDVVFPILHGKFGEDGTIQGLLELSGIPFVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGG 136 LASA+ MDK + ++V+ G+ V SI++ + +++ + P IKP K G Sbjct: 128 CRTLASAICMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI + + + + S ++ D+++IE+ ++G E+ C ++G+ + + E+ + Sbjct: 188 SSIGITKVFHFEQLEDAI--SKAFLEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIE 245 Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 DF+ + KY NS +PA++ ++ ++++ A ++ + C G++R D Sbjct: 246 LMGDFFDFNEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVDMFLT-QG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++++ E+N PG T S +P+M + G S+ +++ ++E A Sbjct: 305 NEIYFNEVNTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346 >gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] Length = 372 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 53/341 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AV+ GG SSE VS S ++ + V + + + Sbjct: 26 AVIFGGQSSEHIVSCMSAVNVIEHIDRTRYDVLLVGITEDGHWIKADSLEDVKNGTWRDK 85 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + ++ D+ F VLHG +GEDG +Q +LEL +IPY G Sbjct: 86 TVSALLLPDATKKCILLMDGDSVREVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCG 145 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKG 135 +L+SA+SMDK+ +K +V GV V R + + S P IKP Sbjct: 146 VLSSAVSMDKLYTKIIVDDLGVRQAAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNA 205 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS G+ Q++ L +++ H ++L+E+ + G E+ C V G +V V Sbjct: 206 GSSRGVTKADDRQALEAGLSEAA--RHDRKILVEETIIGREIECAVFGGGLKEVVASGVG 263 Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY +E KY + S V ++P + V++ A +A+ G++R DF Sbjct: 264 EILAAAEFYDFEAKYYNEESRTVTDPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFV- 322 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +V + EIN PG T +S++P + G + +L+ + Sbjct: 323 KDDGEVVFNEINTMPGFTAISMYPMLWEARGITKDQLVDML 363 >gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] Length = 318 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 161/306 (52%), Gaps = 14/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S ERE+S +SG++ AL+ AG+ +V +D D + D F L Sbjct: 11 IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +L+ L IPYT SG+ ASA + DK SK + G+PV + + R Sbjct: 71 HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130 Query: 119 DSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + +KP GSSLG+ +I+ +P + ++ D++LIEQ + G Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAV--ERAFESSDKVLIEQRLIG 188 Query: 175 IELTCGVMGD---ASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E++ GV+G +L V EI +DFY+ E+KY H +PA++P I + L Sbjct: 189 TEISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGAL 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+A+GC G SRSDF+ LE N PGMT S+FP+ + G +F E Sbjct: 249 ALGAHRALGCYGFSRSDFIVTEEG--PVILETNTIPGMTEASLFPDEIRHCGRTFAEACD 306 Query: 291 WMVEDA 296 M+ A Sbjct: 307 EMIMLA 312 >gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588] gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588] Length = 329 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 167/329 (50%), Gaps = 34/329 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A++ GG S E +S+ S L+ + + V +I V R Sbjct: 5 IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D F +HG GEDG +Q E+L IP+T G++ SAL+ +K +VV Sbjct: 65 TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124 Query: 101 SSCGV-PVCPSILVNRFT-MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S GV V S+ + + D Q ++ P +KP +GGSS+G+ + + + + Sbjct: 125 ASLGVVNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAI- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++N Q+LIE++V G E+TCG+ L VTEI + +F+ YE KY+ S Sbjct: 184 -EKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEI-ISSKEFFDYEAKYTPGVS 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V PA+ P +I ++Q A + + CRGI R DF+++ S ++F+LE+N PG + Sbjct: 242 REVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSEN 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SI P+ AG + +E ++E+ CLR Sbjct: 302 SIVPQQVRAAGKTLQEFYGTLIEE--CLR 328 >gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 382 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 150/359 (41%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A+ ++V I + +S VL Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYEVIPIGIAKSGQWVLVSADTAQWSLAATS 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVAPSAKSVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 + Y +G+LASA+ MDK K V S G+ V P + V + Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYVAVTDRQWRKDPESVRKQVDRLGF 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI ++ + D + H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKVESMAEL--DAAIEEARRHDLKLVIEAGITGREIECAVLEGRG 256 Query: 187 LDVTEIAVPK--------SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 D ++P +FY + KY + PA IP + V+ LA A A Sbjct: 257 TDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALSCPADIPEEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P ++ EIN PG TP S++P+M A +G + +L+ ++ A Sbjct: 317 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLDYADLIDELIYLA 374 >gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054] Length = 380 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 71/365 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS+ + + +++ A ++V I + L +P Sbjct: 16 VAIVFGGRSSEHGVSVVTAASVLRSIDRAKYEVLPIGITHEGRWALVGDEPSRMAITDGR 75 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ +LHG +GEDG +Q Sbjct: 76 MPDVDQVAESTEGQVTLPAAPGNREVVWSEPGAAPKVLGEVDVVLPLLHGPWGEDGTLQG 135 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120 +LEL +PY SG+LASA+ MDK +K+++ S G+ ++ +S Sbjct: 136 LLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYTVLKPREWESEAGRAAARER 195 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI +K + D + H ++++E+ V+G E+ CG Sbjct: 196 IAALGLPLFVKPCRAGSSIGITKVKDLADL--DAAVEEARRHDPKVIVEKGVEGREIECG 253 Query: 181 VMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+ AS+ + +FY +E KY +S +PA++ E++R A Sbjct: 254 VLEFEDGPRASVPAEVLVDGDFEFYDFEAKY-IDSSEVRIPAELTAAEQAEIRRQAVEVF 312 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC G++R DF + E+N PG TP+S +P+M G + EL+ ++ Sbjct: 313 DGLGCEGLARVDFFLLA-DGRWMVNEVNTMPGFTPISAYPKMWEATGVPYAELIDRLL-- 369 Query: 296 ASCLR 300 A+ LR Sbjct: 370 AAALR 374 >gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 375 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68 Query: 37 DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DV R L P D+ F ++HGN GEDG +Q +L LL PY SG Sbjct: 69 DVVRQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 +L SA+S DK +K+++ GV L+ T++ + +KP GS Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193 S+GI ++ D ++ + +++L+E+ ++G EL V+G+ + V I Sbjct: 189 SVGIHKVETSDDY--DEAIRDAFRYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246 Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP D FY+Y+ K+ + P I + KE+ ++A +++A+G +G++R DFL Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDISEALSKELTKMALDSYRALGLKGMARIDFLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + E+N PG T +S++P++ A +G S+REL+ +++ A+ Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLAN 351 >gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora] gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora] Length = 355 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVD-----RSVGLVLAHLKP 51 + ++ GG S E +VS+ S + AL + + V +D + + LK Sbjct: 12 IGLVFGGASGEHQVSIRSAQTLVRALREGTNSERYDVKCFYIDLQGYCWPSIVAESILKE 71 Query: 52 DLAFN-----------------------------VLHGNFGEDGLVQAILELLEIPYTHS 82 DL FN LHG GEDG +Q + L++ P+T S Sbjct: 72 DL-FNQAIEFTNTSKQKGFRGMPEEADLIDIWCLALHGPNGEDGTIQGLFTLMQKPFTGS 130 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L SA+SMDK K ++ G+P P I ++ ++ + + P +KP Sbjct: 131 GVLGSAVSMDKQAMKACFTAVGLPQVPYICLDILELERIPNKLVNRIEKSLGYPCFVKPA 190 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSSLGI Q + L +S+ + +L++E+ V E+ C V+G + L + + Sbjct: 191 NLGSSLGISKCNSRQELISGLKLASA--YDSRLVVERAVIAREIECAVVGKSVLRASVLG 248 Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 ++++Y Y KY+ +S V+PA + + + + L+ A +A+G GI+R DF + Sbjct: 249 EICFENEWYDYTTKYTKGSSYMVIPAHLSEETTRRARELSLEACRAVGAYGIARVDFFYV 308 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T S++P + +G + EL+ +++ A Sbjct: 309 ESTNNLWVNEINTLPGFTEQSMYPMLWMSSGLTLNELVHQLIKLA 353 >gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] Length = 346 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 102/339 (30%), Positives = 153/339 (45%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRSVGLVL 46 + VL G S+ER VS+ SG AL G + +DV D L Sbjct: 3 IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62 Query: 47 AH----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 A + D+ F LHG+ GEDG VQA +L+ I Sbjct: 63 AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135 YT + ++SA+SMDK R+KQV + GV V R + + P +IKP G Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ + ++ + L +++ +IE+++ G E TC V+ + + EI P Sbjct: 183 GSSVGVTICHTEKDVEAGLAL--AFSLEQSAVIEEFIQGREFTCAVIDGKAYPIVEIH-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K +Y + KY + + PA+I + E+Q LA A+G + R DFL Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ LE+N PGMTP S+ P+ AA G + L M+E Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338 >gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum] Length = 323 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 166/300 (55%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S E E+S SGKA A AL AGF+V + + DRS+ L PD+AF HG Sbjct: 14 VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G +Q LE ++IPYT SG+LASA+ M KMRS+ + G+ V + + Sbjct: 74 GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEESFN 133 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 IS PY++KP GSS+G+ + + + + + ++ ++H +L+EQ + G E+ Sbjct: 134 PGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSH--WVLVEQLIPGREIQ 191 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ L EI K++ FY+Y KY S H+ PA + D E+ R+ A + Sbjct: 192 SAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACRV 251 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + RG R D + + LEIN PG+TP S+ PE+A++ G SF +L++ ++ AS Sbjct: 252 LDVRGACRLDTILN-DEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATAS 310 >gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] Length = 374 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 161/360 (44%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------VGLV 45 +A++ GG S+E +S S + +A++ ++V + + VG Sbjct: 10 LAIVFGGRSTEHAISCVSARGVLAAVDREKYEVIPVGIAPDGRWLVLPDDPAVLAGVGQE 69 Query: 46 LAHLKP---------------------------------------DLAFNVLHGNFGEDG 66 L ++P D+ F VLHG +GEDG Sbjct: 70 LPQVRPEAGRGVVLPPDPNGASLVAVEAAPGGVPAVAGALGDLDVDVVFPVLHGPYGEDG 129 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--- 123 +Q +LE+ +PY SG+ ASA +MDK K ++++ G+PV P ++ S+ Sbjct: 130 TIQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLLAAAGLPVGPYAVLRAGETLSEAEKRR 189 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP +GGSS+GI + D LD ++ ++L+E + G E+ CGV+ Sbjct: 190 LGLPVFVKPARGGSSIGISRV--DAWADLDTAIKTARESDPKVLVEAAILGREIECGVLD 247 Query: 184 -------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + SL + + FY + KYSS + +PA +P I V+ A A Q Sbjct: 248 ALGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDATRLDVPADLPAGIADRVRAAAGAAFQ 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G++R D +V E+N PG TP S+FP M A +G + L+ +++ A Sbjct: 308 ALDCAGLARVDVFLTAA-GEVVLNEVNTMPGFTPSSLFPRMWAASGLDYPALVERLIQLA 366 >gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 308 Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 161/306 (52%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 ++VL GG S ER VSL SGK A L+ G V +D+ ++ LA +P+L F L Sbjct: 3 ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG +QA+L++ +PYT SG A++MDK SK ++ G+ V + V+ Sbjct: 63 HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122 Query: 119 DSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S V+KP GGS++ ++ ++ + L SS+W ++ L+E YV G Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKAL--SSAWELENRALVEAYVAGR 180 Query: 176 ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+ D + +P +FY Y KY S +V PA + + + V R A Sbjct: 181 ELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAKYG-GGSRYVSPADLEPSVVEVVSRSAE 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +AH+ GC SR D D +R F LEIN PGMT S+ P+ A G+SF +LL + Sbjct: 240 IAHRVSGCSIYSRVDIRLDGKNR-PFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHI 298 Query: 293 VEDASC 298 VE++ Sbjct: 299 VEESMA 304 >gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482] gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482] gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 324 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ D+++IE ++ G E+TCG + V ++F+ Y KY+ S Sbjct: 183 EKAFEESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] Length = 352 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 DIVKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT L A++M K +KQ+ GV + + D ++ P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L S+++ D++++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYQNAL--EHSFHYEDEIVVEPYIKGREFACGIIDGKALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY + V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDA-EGSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIKKSMEAR 349 >gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 85/336 (25%), Positives = 149/336 (44%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG+S E +S+ S + L+ ++ I + +S +L Sbjct: 6 IGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWENGDVR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ VLHG FGEDG +Q +LE+ IPY + Sbjct: 66 PAVLSPDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + +DK + VV G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 + +P L + + + ++LIE+ V G E+ C ++GD + +V +A+ F Sbjct: 186 SKEELPAAL--AEARQYDAKILIEEAVIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKI 243 Query: 202 YELK---YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ K S NS+ ++PA IP VQ A + ++A+GC G++R D V Sbjct: 244 HQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCSGLARVDLFL-KEDGSVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG+T S +P M AG S +++ +V+ Sbjct: 303 LNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVK 338 >gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 426 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 164/343 (47%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 55 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114 Query: 46 ---------------------LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L +K DL F V+HGN GEDG VQ + +LL+ PY S Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGGS 137 I ASA++ DK +K++++ G+ P ++V NR + I +KP K GS Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI + + L + +++ ++L+EQ +D E+ ++G+ + + Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDY--KILVEQGIDHPQEVEISILGNEHPVASKLGAVR 292 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+ D FY+YE K+ + LP K+P + +E+ +A A++ +G +G++R DFL D Sbjct: 293 VPEGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD 352 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G + +L+ +++ Sbjct: 353 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQ 394 >gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] Length = 324 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ D+++IE ++ G E+TCG + V ++F+ Y KY+ S Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++P DI + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 242 ITPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] Length = 330 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 163/328 (49%), Gaps = 34/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG SSE +S+ SG L+ + + V I + D Sbjct: 6 IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDG++QA L+LL IP T +AL+ +K V+ Sbjct: 66 SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ + L+N+ + + P +K K GSS G+ + + + + Sbjct: 126 KAYGIKTATNYLLNKGDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEELEGAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE +++G E++ GV+ +L VTEI V +DF+ Y+ KY S Sbjct: 184 EVAFKEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEI-VSDNDFFDYQAKYE-GKSQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + + VQR A + + +G++R++F+F + + +LE+N PG++P S Sbjct: 242 EITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIFH--NGEPHFLEVNTTPGLSPAS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 I P+ A AG S EL ++E A R Sbjct: 300 IIPQQAKVAGISLPELFDNVIEQAMRDR 327 >gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 363 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 3 VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPQGSWVLTDGDPDALAISNRQ 62 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 63 LPEVTAQSGTELALPADPLRSGQLVSLSTGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM--DSQHLISPPYV 129 L +PY +G+LASA MDK +K++ + G+PV ++ R T+ D + P Sbjct: 123 LAGVPYVGAGVLASAAGMDKEFTKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVF 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+G+ + + + + H ++++E + G E+ CGV+ V Sbjct: 183 VKPARGGSSIGVTRVSSWDDLAA--AVAVARRHDPKVIVEAAITGREVECGVLEMPDGSV 240 Query: 190 -----TEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 EI V + FY + KY + +PAK+ DI ++ LA A +AI Sbjct: 241 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAID 300 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 301 CQGLARVDFFLT--DDGPVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 358 >gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836] Length = 326 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 155/323 (47%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE VS S S L+ + + ++ + + V Sbjct: 5 IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +K D AF ++HG GEDG +QA ++L+IPY+ G++ S+L+M+K + Sbjct: 65 FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ V S+ +N+ + + + P +KP GGSS +K + + Sbjct: 125 RNFGIRVADSLYLNKDSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKSVDQLQKAIDV 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++IE ++ G E+TCG + +TE+ +DF+ Y+ KY Sbjct: 185 --AFGETPDVIIESFIKGTEVTCGCYKIKNKEVVFPLTEVVTS-NDFFDYDAKYE-GQVE 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I +I +E+QRL + +G +GI R DF+ K + LE+N PGMT S Sbjct: 241 EITPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFII--SDNKPYLLEVNTVPGMTQTS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG + E+L ++E+ Sbjct: 299 FIPQQVAAAGLNITEVLTEIIEN 321 >gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] Length = 380 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQH 122 E++++PY G+LASA MDK +KQ+ + G+ V P I + NRF ++ Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGINVAPGIALDARKFASDAKNRFDAYAEE 185 Query: 123 L--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245 Query: 175 IELTCGVM---GDASLDVTEI--------AVPKSDFYSYELKYSSLNSTHVL-PAKIPLD 222 E+ C V+ + + FY ++ KY ++HV PA +P + Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D +V EIN PG TP+S++P+ G Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVTK-DGRVILNEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] Length = 371 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 87/352 (24%), Positives = 158/352 (44%), Gaps = 61/352 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 VL GG S+E EVSL + + A++ F++ I + Sbjct: 7 VLYGGKSAEHEVSLQTAFSVIGAVQLDKFEIQPIYITNEGEWISGPALTEPIRFAEQLRF 66 Query: 41 ---------------------SVGLVLAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIP 78 + G +L + D + F +LHG GEDG +Q LE+L++P Sbjct: 67 LDGETTHLSQTEGEPSHGEWINPGEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYV 129 Y +G+L+SA +MDK+ K+V + +P P++ + D + ++ P Sbjct: 127 YVGNGVLSSAAAMDKIIMKKVFADAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187 +KP GSS+GI +++ + ++ +++IEQ V E+ V+G+ + Sbjct: 187 VKPANLGSSVGITKATSKEAL--AASINEAFQFDRRIVIEQGVVAREIEIAVLGNDTPVC 244 Query: 188 DVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 V +P+ FY Y+ KY+ + +PAKI + ++++ A A+ + G+ Sbjct: 245 SVPGEILPEDGLAPFYDYKTKYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLV 304 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R+DF ++ E+N PG TP S++P + +G + L+ +VE A Sbjct: 305 RADFFLT-QDNQILLNEVNTMPGFTPYSMYPLLWNESGIPYAALIERLVELA 355 >gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 353 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 326 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 18 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L ++PY AS + DK +K V+ +P + + Sbjct: 78 GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ ++P ++ + + L+E+Y+ Sbjct: 138 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDSAALPAAMV--GCFAYDSTALVERYL 195 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ + V Sbjct: 196 SGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLTSEVAEAVA 254 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA AH A+G R +SR D + D + L +NV PGMT S+ P A AG F + Sbjct: 255 GLAVAAHTALGLRDLSRVDLIVDA-DGQPHVLGVNVAPGMTETSLLPLAAQAAGLDFGRM 313 Query: 289 LLWMVEDASCL 299 + +V A+ Sbjct: 314 IGTLVSQAAAR 324 >gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137] gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027] gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244] gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012] gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031] gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043] gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342] gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467] Length = 351 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 51/340 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52 GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 2 YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F VLHG GEDG +Q +E + +PY +G+LAS Sbjct: 62 AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 A +MDK+ +K ++ + G+P P + V R + + P +KP GSS Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPK 196 +GI + + + ++ + + ++EQ ++ E+ ++G+ + T V Sbjct: 182 VGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKD 239 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF + Sbjct: 240 VAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NE 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E+N PG T S++P + G + +L+ +++ A Sbjct: 299 LFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338 >gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 330 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + S + + V +D++R Sbjct: 5 IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S H+ D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 65 SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124 Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V SILV R + + P +KP GSS G+ +K + L Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAPAL 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLN 210 ++ D +IE ++DG E++ G L TE+ V ++F+ Y+ KY+ Sbjct: 185 RKAL--MEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYN-GQ 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPG 267 + PA+I + + V ++ +GC GI R D++ + K+ +E+N PG Sbjct: 241 VEEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTPG 300 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MTP S P+ AG +++L +VE+ Sbjct: 301 MTPTSFIPQQVRAAGMEMKDVLSDIVEN 328 >gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14] Length = 350 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 159/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +LL I YT L A++M K +KQ+ GV + + + D + ++ P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L + S+ + D+L++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKK--SFRYEDELVVEPYIKGREFACGIIDGTALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D +F LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDAEGN-LFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349 >gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13] gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 353 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840] gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840] Length = 366 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ ++P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364 >gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 359 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 51/345 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 VL GG S E EVSL + ++ ++ ++ + Sbjct: 7 VLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIERLI 66 Query: 37 ------DVDRSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D RS+G +L+ + P + +LHG GEDG VQ +LEL+ +PY +G+L+ Sbjct: 67 ATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGVLS 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGS 137 +AL++DK SKQV++ G+ + ++ I P +KP GS Sbjct: 127 AALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPASLGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195 S+GI + + ++++ +L+IE+ V G E+ V+G+ + + Sbjct: 187 SIGISRCTNRGELLAGI--REAFSYDKKLVIEREVSGREIQVAVIGNERPLASLPGEFIH 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 F+ YE KY T +PA + + ++ LA A+QA GC G++R DF D Sbjct: 245 DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLDG-EG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDASCL 299 +++ EIN PG T S++P M G ++ EL+ ++ A Sbjct: 304 QLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIAR 348 >gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] Length = 385 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 165/376 (43%), Gaps = 81/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG + E +S S + AL+ + F+ I + ++ + + P Sbjct: 9 IAILYGGRADEHPISCISAGSVLRALDTSKFEPVPIGITKNGTWITDGVDPREWNLGSGA 68 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D F VLHG +GEDG +Q + Sbjct: 69 LPAVEETASSRRVVLDPSAGSEGFLVFNRQTGKNESLGHIDAVFPVLHGPYGEDGTIQGL 128 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHL 123 LE++ IPY G+ ASA MDK +K ++S G+ V P I ++ F D + L Sbjct: 129 LEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGITLDTRSYHRDSHFVADGESL 188 Query: 124 --------ISPPYVIKPLKGGSSLGIIVI--KKDQSI---PLDLLQSSSWNHGDQLLIEQ 170 + P +KP + GSS G+ + +D+S+ L + NH ++LIEQ Sbjct: 189 LQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQDKSLLMNRLSAAVFEAANHDWRVLIEQ 248 Query: 171 YVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLNSTHVL-PAKIP 220 +DG E+ C V+ + E ++P FY ++ KY ++HV PA +P Sbjct: 249 GIDGREIECAVLAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHVEVPAHLP 308 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++V++ A A A+ +G+SR D +V EIN PG TP+S++ + Sbjct: 309 QKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTA-DGQVLVNEINTMPGFTPISMYAKAWEA 367 Query: 281 AGYSFRELLLWMVEDA 296 G S+REL+ +++ A Sbjct: 368 MGLSYRELISRLIDGA 383 >gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4] gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4] gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] Length = 324 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ D+++IE ++ G E+TCG + V ++F+ Y KY+ S Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24] gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24] Length = 382 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A++ + V I + ++ VL Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAIDYDKYDVIPIGIAKTGQWVLVSGDTRQWSLSASS 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVSPSARTVTLAEIGGEHQLIVASPNEVPQELGAVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL------ISP 126 + Y +G+LASA+ MDK K V + G+ V P I V D + + + Sbjct: 139 SDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYIAVTDRQWLTDPEAIRKRVDRLGY 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + D LD +++ H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKV--DSLEGLDAAIAAAREHDLKLVIEAGIVGREIECAVLEGRG 256 Query: 187 LDVTEIAVP--------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 + ++P + +FY + KY ++ + PA +P + V+ LA A A Sbjct: 257 TEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDAASLSCPADLPDEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P ++ EIN PG TP S++P+M A +G + EL+ ++ A Sbjct: 317 VGAEGLSRVDFFYTP-DGELIINEINTMPGFTPKSMYPQMWAASGLGYAELIDELIYLA 374 >gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ D+++IE ++ G E+TCG + V ++F+ Y KY+ S Sbjct: 183 EKAFEESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] Length = 366 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364 >gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 392 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 150/328 (45%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE EVSL S + S + + V +D+ D Sbjct: 67 IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V SILV R + + P +KP GSS G+ +K + L Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL 246 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLN 210 ++ D +IE ++DG E++ G L TE+ V ++F+ Y+ KY+ Sbjct: 247 RKAL--MEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYN-GQ 302 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPG 267 + PA+I + + V ++ + C GI R D++ + K+ +E+N PG Sbjct: 303 VEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTPG 362 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MTP S P+ AG +++L +VE+ Sbjct: 363 MTPTSFIPQQVRAAGMEMKDVLSEIVEN 390 >gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum SS14] gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum SS14] gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 396 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 164/346 (47%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---------------------------------- 26 + +L GG S+E +VS+ S + A L Sbjct: 4 VTLLYGGRSAEHDVSVRSARFVARTLCLQHTVMLIGITRRGVWYAQPACALEQLCTGTVA 63 Query: 27 ----EDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPY 79 ED +V + + G + P D+ F VLHG++GEDG VQ +LE+L++PY Sbjct: 64 LSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQVPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 G+ ASAL+MDK+++K + + G+PV P + + + + P + Sbjct: 124 VGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLFV 183 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189 KP + GSS+G ++ + + +++ + +L+E+YV E+ C + G+ V Sbjct: 184 KPAQAGSSVGASAVQTRAPLIPAI--EAAFQWDEVVLVERYVRAREIECALSGNGPYTVH 241 Query: 190 -TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + FY YE KY+ + V + A + Y+++ LA A++A+G G++R D Sbjct: 242 GAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARVD 301 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F + +V+ E+N PG T +S+FP++ AG + ++L+ ++ Sbjct: 302 FFLLE-TGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] Length = 346 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 143/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIIFGGCSEEHPVSVKSAREVAQNLDVEKYEPFFVGITKGGDWRLCNGPDTDWERGDHR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAVLSPDRGDRGLLVLDQGRYETITLDVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V SS G+ V IS P +KP + G S G+ + Sbjct: 126 SSALCMDKSLAYLVASSAGIRTPSHWTVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYS 201 + + + + ++ + ++LIE+ V G E+ C V+G+ +T IA+ F Sbjct: 186 RREELLSAV--ETARQYDSKVLIEEVVVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRI 243 Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ S NS ++PA IP + V A ++A+GCRG++R D +V Sbjct: 244 HQEDQPETGSDNSVAIVPADIPEESRSLVTEQAKALYRALGCRGLARVDMFLRE-DGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S +P M A A E++ +V A Sbjct: 303 LNEVNTFPGMTSYSRYPRMMAAADLPLTEVIDRLVSLA 340 >gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6] gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6] Length = 382 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 103/359 (28%), Positives = 151/359 (42%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A+ + V I + +S VLA Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYDVIPIGIAKSGQWVLAGGDTAQWSLAGKA 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVAPSEQTVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 + Y +G+LASA+ MDK K V S G+ V P + V + Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVAVTDRQWQKDPEAVRKQVDRLGF 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + D LD + H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKV--DSLEGLDAAIEEARRHDLKLVIEAGIVGREIECAVLEGRG 256 Query: 187 LDVTEIAVP--------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237 D ++P +FY + KY ++ + PA IP + V+ LA A A Sbjct: 257 TDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLSCPADIPDEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P + EIN PG TP S++P+M A +G + EL+ ++ A Sbjct: 317 VGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMYPQMWAKSGLGYAELIDELIHLA 374 >gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 Length = 319 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 33/320 (10%) Query: 3 VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40 ++ GG+S E EVSL S + AL K + + + Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+ + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL DK SK+V+ Sbjct: 64 PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKRVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + GVPV P + V + P + +KP GSS+GI +++ Q + L ++ Sbjct: 124 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 180 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + ++ ++E+ + EL GV+G+ + V E+ ++ FY YE KY+ + ++P Sbjct: 181 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 239 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ LA A++ +G RG +R DF +++ E+N PG TP S +P Sbjct: 240 APLDPGTQETVQELALKAYKVLGVRGXARVDFFL--AEGELYLNELNTIPGFTPTSXYPR 297 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + G ++ ELL +VE A Sbjct: 298 LFEAGGVAYPELLRRLVELA 317 >gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 360 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 15 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 75 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 195 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 252 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 253 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 312 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 313 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 358 >gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 333 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 150/327 (45%), Gaps = 35/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S G+ V PS+L+ R D + I P +KP GSS G+ +K + L Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNS 211 ++ D ++IE +++G E++ G V V ++F+ Y+ KY+ Sbjct: 188 --RVAFMESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEVVTTNEFFDYDAKYN-GQV 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGM 268 + PA+I + K+V + + C GI R D++ K+ LEIN PGM Sbjct: 245 QEITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTPGM 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L +VE+ Sbjct: 305 THTSFIPQQVHAAGLDIKDVLTDIVEN 331 >gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE VS+ S + S ++ + + ++ VD++ Sbjct: 5 IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + H + PD A+ +HG GE+G++Q ELL IPY+ +L SAL+ K Q + Sbjct: 65 SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+LVN+ D I P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 +++ D ++IE ++DGIEL G + + V +++F+ Y KY T Sbjct: 183 EAAFKESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEVVSQNEFFDYNAKYK-GEVTE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 242 ITPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 301 IPQQVRAAGLDIKDVMTDIIED 322 >gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] Length = 350 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+ E VS+ S + A L+ ++ I + +S L Sbjct: 6 VGIIFGGVFEEHPVSVKSAQEVARHLDTDRYEPYWIGITKSGDWRLCDGPEASWEDGAHR 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 ++ D+ VLHG GEDG Q + EL IPY Sbjct: 66 PVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVLPVLHGKLGEDGAPQGLFELSGIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 + +SAL MDK + VV+ G+P + ++ P +KP + GSS G+ Sbjct: 126 CDVQSSALCMDKSLAYTVVAEAGIPTPTFWTLYPGDEIDPGVLPYPVFVKPARSGSSFGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKS 197 + + D +++ + +++LIE+ V E+ C ++G+ + +V +A+ Sbjct: 186 SKVSSAAEL--DEAIATARQYDEKVLIEEGVVAEEIGCAILGNGADLVTGEVDHVALSHG 243 Query: 198 DFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F ++ + S N+T ++PA IP + + V+ A ++A+GCRG++R D Sbjct: 244 FFKIHQEDAPETGSENATFIVPADIPAEAQELVKTEAQRVYRALGCRGLARVDMFL-KAD 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V E+N PG+T S +P M A AG S ELL + A Sbjct: 303 GTVVLNEVNTLPGLTSYSRYPRMMAAAGISMTELLDRAITLA 344 >gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] Length = 288 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 9/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S E+E++L KA +L+ G+ V +++D+ + L P+ F + HG Sbjct: 3 ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPY S SA+ MDK SKQ+ + + Sbjct: 63 TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIKTPKWKAYKPKDVID 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P + KP GSS G+ ++ D+S+ + D+L++E++++G ++T G Sbjct: 123 WSI--FPCIAKPASAGSSFGLFKVEDDKSLKEAAQN--IFKIDDKLIVEEFIEGKDMTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 L+ EI +PK Y +E KY+ S ++ I K+++ +A Sbjct: 179 YFKGFILEPIEI-IPKKGIYDFESKYTKGMSEYIFVE--DESIAKKLKEIASKLVDIFEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++R DF + V+ LEIN PG+T +S+ P AG SF +++ +V Sbjct: 236 KDMARIDFRV--KGKDVYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLV 286 >gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] Length = 315 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 6/285 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ER+VSL+S + L D G++ +D D+AFN+ HG Sbjct: 12 IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWERLE-DADIAFNIQHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG+ Q +L + + T S +L SAL+MDK+RSKQ+ S G+P +V+ T + Sbjct: 71 VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAA 130 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L IKP GSSLG+ + ++ + G +L E+++DG E T Sbjct: 131 ALLSEWGAAFIKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEG--ILAEEFIDGPEYTV 188 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++GD +L I + +FY YE KY ++ + +P + + + RLA A A+G Sbjct: 189 AILGDRALPPIRIEASR-EFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAALG 247 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 C R D + + + LE+N PGMT S+ P A AG S Sbjct: 248 CSIWGRVDLMRNRR-GEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 368 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 58/344 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 20 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79 Query: 39 ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++V +L D F LHG GE+G VQA+ Sbjct: 80 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 137 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVI 130 L+L +I YT SG LAS ++MDK SK+++ + ++++ + Q P V+ Sbjct: 138 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 197 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GGSS+G +++ ++ + ++ D++++E+++ G E + GV+ + ++ Sbjct: 198 KPNSGGSSVGTMIVHDEEEL--ADSLRDAYRFDDEIIVEEFITGREFSLGVVNEQAMPAI 255 Query: 191 EIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI V +Y YE K+ + +T + P I +++ E++R+A + +G R DFL Sbjct: 256 EIVV-NDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFL 314 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A AG S+ +L ++ Sbjct: 315 VNDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 356 >gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] Length = 377 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S ++ + V Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDGMDKDKYNVKVFMFTKDGILLDNAASQRIFDGEPED 67 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+D + + A D F V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVKEAYATMDLDSPLAPLEALRTAGPIDFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASALS DK +K+++ GV P +LV D ++ + +KP K GS Sbjct: 128 ITASALSFDKDYTKRILDLAGVRNTPYVLVTPENRDQYDWQAIENELGTTVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI ++ +Q L + +++ ++L+EQ + + E+ ++G+ + + Sbjct: 188 SVGIHKVENEQEYQAALDDAFIYDY--KVLVEQAINNPREVEISILGNEKPIASKLGGVR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP +P + +E+ +A A++A+ +G++R DFL D Sbjct: 246 VPKGDAFYDYENKFVDASGVVFDLPVILPEKLTREITEMALKAYKALDMKGLARIDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E N PG T +S++P+M + +G + L+ ++E Sbjct: 306 END-VPYLGEPNTLPGFTNISLYPQMWSVSGIDYSTLIDKLIE 347 >gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M] gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M] Length = 366 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 201 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] Length = 389 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 153/376 (40%), Gaps = 81/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG + E +S S + AL+ F+ I + R ++ P Sbjct: 8 VAIMYGGKADEHSISCISTASVLRALDAERFEPVLIGITRDGVWIVDGEDPRAWDLAAGL 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG GEDG +Q + E Sbjct: 68 PSVEQVPGSRPVVLDMSQGGDGFYARNADGTLESLGHIDVVFPVLHGPNGEDGTIQGLFE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 +L +PY G+LASA SMDK +K ++ + G+ V I ++ D+ Sbjct: 128 MLGVPYVGCGVLASAASMDKHYTKVLLDNAGIAVANGITLDTRAFDADTQFAAQGETLLN 187 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGDQLLIEQYV 172 + + P +KP + GSS G+ + + L + H ++L+EQ V Sbjct: 188 MVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGDAVSGAAQLAAAVYEAAQHDWRVLVEQGV 247 Query: 173 DGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIP 220 D E+ C V+ + + ++P FY ++ KY ++HV PA +P Sbjct: 248 DAREIECAVLCPVAGQPVQASLPGEIVLDRRAEGDDQFYDFDSKYMDKQASHVEVPAHLP 307 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ + V+ A A +A+ G+SR D V EIN PG T +S++P+ Sbjct: 308 EDVLERVRETAIKAFKAVDGMGLSRVDSFVTA-DGDVIVNEINTMPGFTSISMYPKAWEA 366 Query: 281 AGYSFRELLLWMVEDA 296 +G + EL+ ++E A Sbjct: 367 SGLPYGELITTLIEGA 382 >gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L G S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGDRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI ++ + + ++ + + ++EQ ++ E+ ++G+ + T Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 155/340 (45%), Gaps = 53/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSLSSG A ALE+ G + +D+ Sbjct: 3 IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62 Query: 39 -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74 + L L D F LHG GE+G +QA ++ Sbjct: 63 YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I Y+ S S L+MDK +KQ++ +P L + + S P V+KP+ Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQL---WEQGQEVYYSTPCVVKPID 179 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ +++ + L ++ + +++IEQ ++G E + GV+GD L EI + Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAE--KYNSKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY+YE KY + + PA I D+ + + L ++ +G SR D++ Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTK-E 295 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +E N PGMTP S+ P+ A G SF EL +VE Sbjct: 296 LDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVE 335 >gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 316 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 158/308 (51%), Gaps = 15/308 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60 V GG S EREVSL SG+A AL G+ V +D D + +V L DL F LHG Sbjct: 5 VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L+ IPYT A MDK ++ V+ + GV V I + +MD Sbjct: 65 GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFD-GSMDQ 123 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L+ V+KP + GS++GI ++ D LD ++ + +L++E++++G Sbjct: 124 GVLLELLRRWGRLVVKPCRCGSTVGIGIV--DHPSRLDRALDEAFRYDRRLVVERFIEGR 181 Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V G +L EI P+S FY Y KY+ + ++ PA + + V R A Sbjct: 182 ELTVAVFDTPEGPKALPTVEIR-PRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAA 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC SR D + + + LE+N PGMT S+ P+ A G+ F E+L Sbjct: 241 VEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRR 300 Query: 292 MVEDASCL 299 + E + L Sbjct: 301 ICEASLAL 308 >gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330] gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330] gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] Length = 353 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1] gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1] gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33] gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1] gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94] gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99] gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] Length = 353 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110] gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110] Length = 376 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 59/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E EVS +S AL + V I + R Sbjct: 17 VGLLFGGRSAEHEVSRASAANILRALNSDRYDVYLIGISRDGRWFACDSGNGAGTGSTAL 76 Query: 47 ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+AF +LHG GEDG VQ LEL ++ Sbjct: 77 TISDEAPEIGLVPGGRGRLVHCDGPTGSDAGSIDVAFPILHGPNGEDGTVQGALELADVS 136 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPL 133 + S + SA++MDK SK+++ G+PV P + + L +P +KP Sbjct: 137 FVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFLTTTASSRIEYAAAVAALGTPDLFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV--- 189 GSS+G+ + ++ + ++ + ++L+EQ ++G E+ C V+ +++ D+ Sbjct: 197 NLGSSVGVSRARSEEEF--AASCALAFRYDRKILVEQALNGAREIECSVLEESTGDIRAS 254 Query: 190 ---TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + FYSY+ KY + + +PA +PL + +Q LA + C G++R Sbjct: 255 GLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQARRLQELAVEVFNVLCCEGMAR 314 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF +VF E N PG T S++P++ +G S +L+ ++ A Sbjct: 315 VDFFV--QGDEVFVNEANTLPGFTSSSMYPKLWEASGLSQTDLMDKLIAHAFAR 366 >gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 350 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +LL+I YT L A++M K +KQ+ GV + + + D + ++ P V Sbjct: 123 DLLDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L + S+++ D+L++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKK--SFHYEDELVVEPYIKGREFACGIIDGTALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 IEI-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D +F LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDA-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349 >gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] Length = 349 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 53/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHL---- 49 + VL GG+S ER VSLSSG AL G KV+ +D DR+V A + Sbjct: 3 IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62 Query: 50 ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75 + D+ + LHG GEDG +QA L+LL Sbjct: 63 KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKP 132 +PYT SG L SA++MDK +K++V + V V + + L+ P V+KP Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLV-AHKVRTPSWCTVTVTEENLEQLMEETKLPVVVKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 + GSS+G+ + + L +S G + ++EQYV G E+ V+ +L EI Sbjct: 182 IASGSSIGVTIAHTKDDLRRGLEESIRL--GGRTVLEQYVKGREIQVAVLNGKALPSIEI 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P++DFY Y KY + V PA+IP + K+V A + +G SR+DF+ Sbjct: 240 -IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADFIVTE 298 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + ++LEIN PGMTP S+ P+ AA G + L +V + R Sbjct: 299 -DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIVASSLKAR 345 >gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] Length = 380 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQH 122 E++++PY G+LASA MDK +KQ+ + G+ V P I + NRF ++ Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDAENRFDAYAEE 185 Query: 123 L--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245 Query: 175 IELTCGVM---GDASLDVTEI--------AVPKSDFYSYELKYSSLNSTHVL-PAKIPLD 222 E+ C V+ + + FY ++ KY ++HV PA +P + Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D +V EIN PG TP+S++P+ G Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVTK-DGRVILNEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] Length = 366 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 201 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364 >gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] Length = 377 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 37 ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+DR + ++A + D + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASALS DK +K++++ G+ P +L+ + + IKP + GS Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI + + L ++ + ++L E+ +D E+ ++G+ + + Sbjct: 187 SVGIHRVTNAEEYAAALKD--AFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVR 244 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+SD FY YE K+ + LP K+P + E+ +A A++ +G +G+SR DFL D Sbjct: 245 VPESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 305 -SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346 >gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 400 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 19/271 (7%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 L+ D+ F VLHG FGEDG +Q +LEL I Y SG+L SA MDK K++ +S +P Sbjct: 122 QALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLP 181 Query: 107 VCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + R + + + P +KP GSS+GI + + + + + Sbjct: 182 ITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELA 241 Query: 158 SSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLN 210 + ++ ++++EQ V G EL V+G+ + + + + VP +FY YE KY S Sbjct: 242 AGFDR--KIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEG 299 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQPGMT 269 S ++PAK+ K+++ +A A +A C G++R DFL +P + +++ EIN PG T Sbjct: 300 SVPIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +S++P++ +G + +L+ ++E A R Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERR 390 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 + +L GG S E EVSL S + A++ ++V I + + V A Sbjct: 6 IGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTAD 53 >gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94] gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 348 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 183 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346 >gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] Length = 377 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 37 ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+DR + ++A + D + V+HGN GEDG VQ + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I ASALS DK +K++++ G+ P +L+ + + IKP + GS Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI + + L ++ + ++L E+ +D E+ ++G+ + + Sbjct: 187 SVGIHRVTNAEEYAAALKD--AFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVR 244 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY YE K+ + LP K+P + E+ +A A++ +G +G+SR DFL D Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 305 -SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346 >gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] Length = 324 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE +VSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 +++ ++LIE Y++G E+TCG V V +++F+ Y+ KY+ + Sbjct: 185 --AFDEAQEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEVVTENEFFDYDAKYN-GQVSE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ D+ +Q L + +G GI R D++ KV LE+N PGMT S Sbjct: 242 ITPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKVNLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 316 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 16/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A L AG V D D + + P+ AF LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTDAGLVPAVLADPPEAAFVALHGGV 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++++LELL +PY + A ++ DK +K VV S G+ S+ + + T Sbjct: 69 GEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHDLG 128 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG +++ + +P ++ + +GD LIE+Y+ Sbjct: 129 ASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAMV--GCFAYGDTALIEKYI 186 Query: 173 DGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG+E++ V+ V VP Y Y +Y++ + PA++ + + + Sbjct: 187 DGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEACKA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R +SR+D + D S + ++LE+NV PGMT S+FP AG + Sbjct: 247 MAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGTVF 305 Query: 290 LWMVEDAS 297 ++E A+ Sbjct: 306 RVLLERAA 313 >gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] Length = 330 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +D+ D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+GL+Q +L+ +PY+ SG+L A++ DK Q + Sbjct: 68 SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127 Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V S+L+ + + + I P +KP GSS G+ +K+ + + Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 + + ++++E Y++G E++ GV L TE+ V ++F+ Y+ KY+ Sbjct: 188 RK--AMLESPEIMVESYLEGTEISIGVYKTKEKAVVLPATEV-VTSNEFFDYDAKYN-GQ 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + PA++P D+ + V+++ + + C GI R DF+ + LE+N PGMT Sbjct: 244 VQEITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISK-EGSISMLEVNTTPGMTA 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG S ++L +VE+ Sbjct: 303 TSFIPQQVRAAGLSMTDVLTEIVEN 327 >gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] Length = 337 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VS+ S + S ++ + + +++ D Sbjct: 16 IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +KPD A+ +HG GE+G++Q EL+ +PY+ +L SAL+ K Q + Sbjct: 76 SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+LV + I P IKP GSS G+ +K + I L Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 193 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D ++IE ++DGIEL G +TE+ V K++F+ + KY T Sbjct: 194 EAAFKESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEV-VSKNEFFDFNAKYK-GEVT 251 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ + VQ+L + + C+GI R D++ K+ LEIN PGMT S Sbjct: 252 EITPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATS 310 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 311 FIPQQVRAAGLDIKDVMTDIIED 333 >gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] Length = 354 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 53/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSL SG L + G K +DV Sbjct: 3 IIVLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG+ GE+G +QA Sbjct: 63 EIASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129 ++L I YT L A+SM+K+ +KQV VP + T ++ + P V Sbjct: 123 DVLGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSSLG+ + ++ + +S +H D+++IE ++ G E CG++ +L + Sbjct: 183 VKPCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI +P+ + +SYE KY +T + P + K++QR A A+ +R+DF Sbjct: 243 VEI-IPRDEVFSYENKYQDGGATEICPPVSLDAKTMKKIQRAGEKAFDALRMDVYARADF 301 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + D + + LE+N PGMTP S+ P A AG + EL ++E++ +R Sbjct: 302 IVDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353 >gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 323 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 165/311 (53%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V++ DVD S+ L +PD +LHG Sbjct: 13 VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ ILELL +PY + A ++ DK +K VV+ GV S+ + T Sbjct: 73 GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP + GS+LG V++ + +P ++ S++ +GD L+E++V Sbjct: 133 AGAVMAALVDRLGLPLMVKPTRSGSALGCTVVRTAEQLPAAMV--SAFAYGDVALLERFV 190 Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ V+ D +L I P Y Y +Y++ + V PA + ++ EV Sbjct: 191 PGMEVAVPVVDDGSGARALPAVAIQ-PDGGVYDYTARYTAGATEFVTPAPLSEELAAEVA 249 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R+A LAH+ +G R +SRSD + D R V++LE+NV PG T S P AG ++ Sbjct: 250 RVALLAHEVLGLRDVSRSDLIIDHEGR-VWFLEVNVAPGFTETSTVPLAIQAAGLDLGKV 308 Query: 289 LLWMVEDASCL 299 MV+ A+ Sbjct: 309 CASMVQAAAAR 319 >gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] Length = 349 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 159/350 (45%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE E+S+ S + ++++ +++ I + ++ + Sbjct: 4 LAIVFGGQSSEHEISVISATNISKQVDESKYELILIGITKTGKWLKVDSIASMEDGSWIN 63 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG FGEDG +Q +LEL IPY Sbjct: 64 SKINAYILPDAIKKCIIVEIDGEYKEVHVDVVFPVLHGLFGEDGTIQGLLELSGIPYVGC 123 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA+ MDK+ +K VV G+ V + + + P +KP Sbjct: 124 GVLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVKRIEDRFDYPVFVKPS 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI 192 GSS G+ + + +L++ NH ++L+E+ + G E+ CGV+G + + + Sbjct: 184 NAGSSKGVSKASNREELEKGILEAL--NHDRKVLVEETIVGHEVECGVLGRPGEVMASGV 241 Query: 193 AVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 KS FY Y+ KY + T + +++P + +++ A A+ G+SR DF Sbjct: 242 GEIKSAATFYDYDAKYKLDSLTLL-DSQLPNGVREKLPECAKKIFTALDGFGLSRVDFF- 299 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ + EIN PG T +S++P + AG +EL+ ++E A R Sbjct: 300 AKEDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIELAFERR 349 >gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 351 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 58/344 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62 Query: 39 ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++V +L D F LHG GE+G VQA+ Sbjct: 63 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 120 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVI 130 L+L +I YT SG LAS ++MDK SK+++ + ++++ + Q P V+ Sbjct: 121 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 180 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GGSS+G +++ ++ + ++ D++++E+++ G E + GV+ + ++ Sbjct: 181 KPNSGGSSVGTMIVHDEEEL--ADSLRDAYRFDDEIIVEEFITGREFSLGVVNEQAMPAI 238 Query: 191 EIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI V +Y YE K+ + +T + P I +++ E++R+A + +G R DFL Sbjct: 239 EIVV-NDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFL 297 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A AG S+ +L ++ Sbjct: 298 VNDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 339 >gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 303 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 6/295 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + + I Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIEAGEKVTPDKI 120 Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P ++KP GSS+G+ + +P LL++ H ++L+E ++ G E+ ++ Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFSDLPQALLEAE--KHSPRVLVEPFLAGREVQSAIL 178 Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L EI S+ FY+Y KY S H+ PA + D+ ++ A + R Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAFGLLELR 238 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L + +V LE+N PG+T S+ PE+A G SF +L+ ++ A Sbjct: 239 GVARMDTLVLE-NGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetaseA gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] Length = 353 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 249 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 139/251 (55%), Gaps = 13/251 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +N Sbjct: 2 FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61 Query: 115 RFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R + + P ++KP + GSS+G+ + K + L++ ++ H Sbjct: 62 RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVE--AFRHDSD 119 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +LIE+++ G E T ++GD L I P FY YE KY S + + P+ + ++ + Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAP-GVFYDYEAKYLSDKTQYFCPSGLSSELEQ 178 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ LA A+QA+ C G R D + D + LE+N PGMT S+ P A +G SF Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237 Query: 286 RELLLWMVEDA 296 +L+ ++ A Sbjct: 238 SQLVARILTLA 248 >gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] Length = 355 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 156/352 (44%), Gaps = 53/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S ER+VSL+SG L + G + +D Sbjct: 3 IIVLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGL 62 Query: 38 -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EIAKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 +LL I YT ALSM+K+ +KQ+ GVP + ++T D S+ P V Sbjct: 123 DLLGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS+G+ + ++ + +S N ++L+IE Y+ G E V+ +L + Sbjct: 183 VKPCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 EI +PK ++YE KY + + + P I + + + R A A+ +R+DF Sbjct: 243 VEI-IPKDGVFNYENKYQAGGAQEICPPVSIDEETQQRMMRAGEEAFAALRMDVYARADF 301 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + D + + LE+N PGMT S+ P+ A AG + EL ++E++ R Sbjct: 302 IIDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353 >gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 319 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 18/300 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG+S ER+VSL SG+ A AL G VS +DVD + L +PDL + +LHG Sbjct: 7 VVILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG ++ +LELL++PY + S ++ +K +K V+++ GV + + + Sbjct: 67 ASGEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGVLTPSYVTLPQSLFRE 126 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS+LG+ ++ + +P L+ + +GD LIE+ Sbjct: 127 LGARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQALVDCFA--YGDLALIEE 184 Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E++ V+ +L EI Y Y+ +Y+ + + PA++ +I Sbjct: 185 AITGTEVSVSVVESPDVTALPAVEIIT--DGPYDYDARYNPGRTQYFTPARLDPEIADAA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 R+A AH +G R +SRSD + D +V++LE+NV PGMT S+ P+ +G S + Sbjct: 243 ARVALTAHTTLGLRHVSRSDLIIDGK-GQVWFLEVNVAPGMTETSLLPQAVVASGQSLPD 301 >gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] Length = 309 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 6/292 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG ++ERE+SL SG+ AS LE AG V++ID D FN+LHG Sbjct: 12 AVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDP-AVEQWADQLSDIDFVFNLLHGP 70 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S G+P L+ T S Sbjct: 71 GGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDWSD 130 Query: 122 HLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + +KP GSS+G+ + + ++ ++ G ++ E +V G E T Sbjct: 131 LIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEYTVS 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L I P S+FY ++ KY S N+ P+ + E+ LA A A+ Sbjct: 189 ILGDRALPAIRIE-PASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYAVDA 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 R D + D +S LE+N PGMT S+ P A + + L + Sbjct: 248 AVWGRVDVMRD-ISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEI 298 >gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 370 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +A++ GG S E VS + + A++ + V I + R V PD Sbjct: 6 VALIYGGASGEHSVSCMTAASVLRAMDPDKYDVVPIGIRRDGTWVPGSADPDALEAAGPQ 65 Query: 53 ----------------------------------------LAFNVLHGNFGEDGLVQAIL 72 +AF +LHG FGEDG +Q L Sbjct: 66 GEVGGSPSRVLIEIGGKPRALTLVESEGGAPVVEALGSFDVAFPLLHGPFGEDGTIQGFL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHL 123 E+ +PY G+ ASA MDK K V+ S G+ V P +LV + Sbjct: 126 EMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYVLVAPRRWRTEKGQILAEIAQK 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP + GSSLGI + + + + +++ ++++EQ V G E+ C V+G Sbjct: 186 LTFPVFVKPARAGSSLGIGKVLEPGGLERAI--AAAQKVDPKVIVEQGVKGREVECAVLG 243 Query: 184 D------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + EI + +D+Y +E KY + +PA + D+ E +R+A + Sbjct: 244 GRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAVPAPVEADVEAEARRIAARVFE 303 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A C G++R DF ++ E N PG T S++P + + G + EL+ +V A Sbjct: 304 AFDCEGMTRVDFFLT-DDGEILVNEHNTIPGFTEFSMYPILWEHTGIPYSELIDELVALA 362 >gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 370 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51 +A+ GG+SSE EVS S A AL +A ++V + + ++ + H P Sbjct: 9 VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ V+HG GEDG +Q + E+ Sbjct: 69 GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126 IPY G+LASA+ MDK + V+ + GVP C R ++ ++ + Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K LD + D++++E+++DG E+ C +G+ Sbjct: 189 PIFVKPANAGSSVGIS--KAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246 Query: 187 LDV------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + ++FY+Y+ KY + S V+PA + + EV+ A A+ A+GC Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+SR DF + + +V E+N PG T +S++P++ + G +F +L+ +++ A R Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLAVRRR 366 >gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 378 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 155/370 (41%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + ++ ++ P Sbjct: 6 IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 66 PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------- 123 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 126 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARDYDAACAFAANGETMLA 185 Query: 124 ------ISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP + GSS G+ ++++ + L + +H ++L+EQ +D E Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + D + P FY ++ KY ++HV PA +P + Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + V+ A A +A+ G+SR D KV EIN PG TP+S++P+ G S Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLISTLIE 374 >gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium] Length = 330 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 51/322 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + +L GG S+E EVS+ S + +A+ ++V + + + V + Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 48 HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 HL D + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192 GSS+GI + + + L ++++ + + ++EQ ++ E+ V+G+ + T Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300 Query: 253 LSRKVFWLEINVQPGMTPVSIF 274 ++F E+N PG T S++ Sbjct: 301 K-NELFLNELNSMPGFTEFSMY 321 >gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 355 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG SSE VSL S + + +++ I + + Sbjct: 6 LAIIFGGKSSEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYDGDVDGIEHDTWL 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ D F +LHG GEDG +Q + EL IP Sbjct: 66 CEEHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130 Y G ++SA+ MDK + V+ G+ P + V ++ + P I Sbjct: 126 YVGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFI 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187 KP GSS GI ++ + + + ++++E ++G E+ VMG+ L Sbjct: 186 KPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAG 245 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V EI + F+ YE KY ++S PA+I +++E + +A A++A+ C+G++R D Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVD 304 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + E+N PG T S +P M AG F EL+ +V A Sbjct: 305 MFVTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102] gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102] Length = 353 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + V+ GG S E +VS+ S + A L ++V + +DR VL+ Sbjct: 8 VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67 Query: 49 LKP----------------------DLA---FNVLHGNFGEDGLVQAILELLEIPYTHSG 83 P D+ + VLHG GEDG +Q + EL++ PY +G Sbjct: 68 GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIKP 132 +L SA+SMDK K ++ G+ P + + + P IKP Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L +++ +L++EQ V EL C V+G +L + + Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATL--DPRLVVEQGVQARELECAVLGGTTLRASVV 245 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y YE KY+ ST ++PA +P I + ++ + A A+G G++R DF + Sbjct: 246 GEVRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +V+ EIN PG T S++P + +G + +L+ ++E A Sbjct: 306 DDSRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351 >gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941] gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus 2308] gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19] gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str. 870] gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str. Tulya] gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str. 86/8/59] gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str. 292] gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str. C68] gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str. 9-941] gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] Length = 353 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] Length = 324 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 + + ++L+E ++DG+E+TCG V V ++++ Y+ KY+ S Sbjct: 185 AFA--EAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322 >gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457] gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28] Length = 353 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9215] gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215] Length = 355 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40 + ++ GG S+E EVS+SS K A + FKV +D+ Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + D+ F +LHG GEDG + +L+ P Sbjct: 69 EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + +D + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQ--KIDSRILVEEGLEVREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I K SD+Y Y+ KY S N ++PA+I I KE++++A + +A+ G +R DF Sbjct: 247 IGEIKYESDWYDYDSKYYSNN-KIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 364 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 151/355 (42%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV++GG S E VS +S +AL+ ++V + + ++ + + Sbjct: 6 VAVVLGGRSVEHPVSCASAAGVIAALDPEQYEVVAVGITQAGQWLSVDARSAKLALGDGN 65 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 66 VPEISADSGQHVVLAADPTMKDVAITDAAGGARVLSDVDVVFPVLHGAYGEDGTIQGLLE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130 + ++PY S +L+SA SMDK K+++ + G+PV +++ R + + P + Sbjct: 126 MADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYVVLKRDQTLSEAEKQRLGLPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG------ 183 KP + GSSLGI + + + + + ++L+E G EL CGV+ Sbjct: 186 KPSRAGSSLGISKVTDWDDLDKAIATARA--VDPKVLVEAAFTGVRELECGVLEREDGGA 243 Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++ +E KY + S + L +P + ++ LA + C Sbjct: 244 PDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLPEGTAERIRELAARVFTVMDCSD 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 ++R DF V+ EIN PG+TP S P A AG + EL+ +V A+ Sbjct: 304 LARVDFFL-ASDGTVYVNEINTMPGLTPGSGVPVAWANAGVDYPELVARLVRLAA 357 >gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 93/312 (29%), Positives = 164/312 (52%), Gaps = 21/312 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG++ ER+VSL SG+ A+ L G V D++ +A +PD+ + ++HG Sbjct: 7 ILVVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 + GEDG +Q +LEL+ PY S A L+ K +K + + G+ I + + Sbjct: 67 SVGEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQ 126 Query: 117 ---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 + S+ +S P ++KP GGS+LG+ + + + ++ ++ +GD ++ Sbjct: 127 VGAPAVLQAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAMVD--AFAYGDTVM 184 Query: 168 IEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 +EQ++ G E+ V+ +L EI V Y Y+ +Y++ S PA++ D Sbjct: 185 VEQFIPGREIAVSVVDLDELYALPPVEI-VTDDGRYDYDARYNTGRSQFFAPARLTADET 243 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 EVQR+A H+ +G R +SR D + +++ +++NV PGMT S+FP+ A AG S Sbjct: 244 AEVQRVALEVHELLGLRHLSRVDLIL-GEDGQIYLIDVNVAPGMTDTSLFPQAAEAAG-S 301 Query: 285 FRELLLWMVEDA 296 FR++L + A Sbjct: 302 FRDILGEIAAFA 313 >gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 309 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--VGLVLAHLKPDLAFNVL 58 + V+ GG+S+ER+VSL++G+ L ++V I ++ V L L D + L Sbjct: 7 VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +QAILE L I Y G+++S++ MDK +K++V++ GV V + V R Sbjct: 67 HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126 Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP GGSS+G+ ++ ++ + L + + L+E+ + G Sbjct: 127 ADFKTISEKLGKRIIVKPNSGGSSIGVSFVESEEQLQEALKLV--FTMDKEALVEEVLSG 184 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E++ V+ +I D++ Y+ KYS + + + +I +E+ + A+ + Sbjct: 185 TEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFAYDS 243 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+ C G SR DF+ + K +++E+N PGMT S+ P+ A GYS+ E L ++E Sbjct: 244 YYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDLLIE 301 Query: 295 DA 296 + Sbjct: 302 AS 303 >gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 334 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ S + S + + V +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + K D A+ +HG GE+G++Q ELL IPY+ SG+L A++ DK + Sbjct: 68 SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V S+L+ R D I P +KP GSS GI +K + L Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210 ++ D+++IE+Y+ G E++ G TE+ V ++F+ Y+ KY+ Sbjct: 188 --RVAFMESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEV-VTSNEFFDYDAKYN-GQ 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPG 267 + PA++ + + V + + C GI R D++ + LEIN PG Sbjct: 244 VEEITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTPG 303 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MT S P+ AG +++L ++E+ Sbjct: 304 MTATSFIPQQVRAAGLDIKDVLTDIIEN 331 >gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 348 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 183 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346 >gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] Length = 350 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 160/342 (46%), Gaps = 53/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VSL+SG AL+ G V+ +D Sbjct: 3 IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62 Query: 38 ----VDRSVGLVLAHLK--------------------PDLAFNVLHGNFGEDGLVQAILE 73 +D V K D+ F LHG GE+G VQA+L+ Sbjct: 63 KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + EIPYT S LA+ ++M K SK+++ +P + R + P V+KP Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G ++ + + + + + ++ LIE+++ G E + GV+ + L EI Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDALRF--DNEALIEEFIKGREFSLGVINEQPLPAIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +Y +E K+ + N+T P +P D+++ ++++A A A+G +R DF + Sbjct: 241 V-NDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWS 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 P + ++ +E N PGMTP+S+ P+ A G S+ +L +V Sbjct: 300 PETG-LYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIV 340 >gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 356 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 153/341 (44%), Gaps = 50/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E ++S+ + ++ + + + + ++ + Sbjct: 3 IVLLYGGQSAEHDISIMTAQSIIKHINYQKHTLLPVYISQANQWIKGPAIDRAPEADLPL 62 Query: 46 -----LAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L P+ +AF LHG GEDG +Q + E L +PY +G+ Sbjct: 63 RFNPELDANDPEHGDLVSPCQVFNGEEVIAFPALHGPHGEDGKIQGLFESLNVPYVGAGV 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKG 135 L+SA MDK+ SKQ+ +P P + + D + + P +KP Sbjct: 123 LSSAAGMDKIISKQLFQQAQIPQVPFTALTHYEWDQERAKSLTRIEGELVYPIFVKPANL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193 GSS+GI + + + ++N+ ++++EQ V+ E+ V+G+ +++ V Sbjct: 183 GSSVGISCANDREELIQAI--ELAFNYDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEV 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V FY+YE KY + +PA +P +I +++ A A+ AI G++R DF Sbjct: 241 VKSKSFYNYEEKYINNTVELAIPADLPGEIMDKIRAYAAKAYAAIDSSGLTRVDFFVT-H 299 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ E+N PG T S++P + G + +LL +++ Sbjct: 300 NMDIYINEVNTMPGFTQWSMYPSLWEATGIPYDQLLERLIQ 340 >gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] Length = 324 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE +VSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E +++G E+TCG +TE+ V +++F+ Y+ KY+ + Sbjct: 185 --AFGEAQEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEV-VTENEFFDYDAKYN-GQVS 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ +Q L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 355 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 163/348 (46%), Gaps = 54/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKV---------SQIDVDRSVGLVLA 47 + ++ GG S+E +VS+SS K AL F V +D D+S+ L+ Sbjct: 9 IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68 Query: 48 HLK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F +LHG GEDG + +L+ + P Sbjct: 69 KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIK 131 GIL SAL MDK+ K++ S +P + + N +++ + P +K Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I L + +W +++IE+ +D EL CG++G+ L +E Sbjct: 189 PANSGSSLGISKAKTRSEIIKALQK--AWEIDSRIVIEEGLDVRELECGIIGNLKLTASE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I +D+Y Y+ KYS N ++PA I I ++++ +A + +A+ G +R DF Sbjct: 247 IGEVSYSTDWYDYDSKYSMDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + +S K+F EIN PG T S+FP + +G + +L+ +V+ +S Sbjct: 306 LEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353 >gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] Length = 348 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ I + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 183 GVHKIVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346 >gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 346 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 147/342 (42%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ I + +S L Sbjct: 6 IGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWEDGDCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PVVLSPDSDVHGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VV + G+ V + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVDAARFTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201 +++ + + ++ + ++LIE+ V G E+ C ++G +V IA+ F Sbjct: 186 REEEMSSAV--ETARQYDSKVLIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRI 243 Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ + S NS ++PA IP VQ A ++ +GCRGI+R D +V Sbjct: 244 HQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCRGIARVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG E++ V A + Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLPMSEVIDLTVSLALTGK 344 >gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12] gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] Length = 324 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 ++ ++++IE ++ G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGMDIKDVMTDIIEN 322 >gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] Length = 322 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 33/320 (10%) Query: 3 VLMGGISSEREVSLSSGKACAS----------------------ALEDAGFKVSQIDVDR 40 ++ GG S E EVSL S A KV+ I Sbjct: 8 LIAGGRSPEHEVSLLSAHGVLEHMPFATELAVIAKDGRWLLGEEAFAALRAKVAPIG-RH 66 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L + D+ F +LHG +GEDG +Q LE+L PY +G+ ASAL MDK SK+++ Sbjct: 67 AFPPPLDWSRYDVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKRIL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + G+PV P + + + P + +KP GSS+GI + + L+ + ++ Sbjct: 127 AQAGIPVVPWVALYQGERPFIPFDPP-FFVKPANTGSSIGIRRV--EHYAELEEALAEAF 183 Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 H + ++EQ + G EL G++G+ + V E+ ++ FY YE KY+ + ++P Sbjct: 184 RHDQKAVVEQALSGVRELEVGILGNIFGEASPVGEVRY-QAAFYDYETKYTPGRAELLIP 242 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + VQ LA A++ +G RG++R+DF +V+ EIN PG TP S++P Sbjct: 243 APLDPGTQETVQELALKAYRLLGIRGMARADFFL--AEGEVYLNEINTIPGFTPTSMYPR 300 Query: 277 MAAYAGYSFRELLLWMVEDA 296 + A G + ELL +VE A Sbjct: 301 LFAAGGLPYPELLRRLVELA 320 >gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] Length = 324 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 + + ++L+E +++G+E+TCG V V ++++ Y+ KY+ S Sbjct: 185 AFA--EAKEVLVEAFMEGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322 >gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] Length = 358 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE VSL S + + ++++ I ++++ L Sbjct: 13 LGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHDTWE 72 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 ++ D F VLHG GEDGL+Q +LEL+ I Y + Sbjct: 73 NEETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDV 132 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSL 139 ++SA+SMDK + +P I + + Q I P++IKP GSS Sbjct: 133 MSSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQIQEKIELPWIIKPCNAGSSY 192 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--S 197 G+ + + + ++ ++L+E+ + G E+ C VMG+ + I + Sbjct: 193 GVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSIDEIEITG 252 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 F+ +E KY + PA+I +KE Q LA + A+ C G++R D ++V Sbjct: 253 GFFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFVTE-DKEV 311 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M AG F +L+ ++E A Sbjct: 312 ILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350 >gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum] Length = 303 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 147/295 (49%), Gaps = 6/295 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + + I Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPDKI 120 Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P ++KP GSS+G+ + +P LL++ H ++L+E ++ G E+ ++ Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAE--KHSSRILVEPFLPGREVQSAIL 178 Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L EI S+ FY+Y KY S H+ PA + D+ ++ A + R Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLELR 238 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L P +V LE+N PG+T S+ PE+A G SF +L+ ++ A Sbjct: 239 GVARMDTLVLP-DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 344 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTH 213 ++ +++++E ++DG ELTCG V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] Length = 324 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 153/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++L+E ++ G E+TCG V V ++++ Y+ KY+ S Sbjct: 183 EKAFKEAREVLVEAFMQGTEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322 >gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5] Length = 328 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG S ERE++L S SAL+ + ++ ID+ D Sbjct: 6 IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + D A ++HG GEDG +Q L+++ +PY+ + +S ++ DK+ +K+ V Sbjct: 66 SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ + I + + + P IKP GSS G+ + + + Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPAV-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 +++ D++LIE+ ++G E+ CG+M G L V K DF+ Y+ KY+ S Sbjct: 184 EAAFAQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEIVSKKDFFDYQAKYTEGYSDE 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I +I +E+ R+ +A++A C G+ R DF+ P K + +EIN PGM+ SI Sbjct: 244 ITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTP-EGKPYMIEINSIPGMSAGSI 302 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ A G + E+ ++ D +C + Sbjct: 303 VPKQAKAMGMTLGEMFDLVIAD-TCRK 328 >gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10] gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10] Length = 339 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 97/328 (29%), Positives = 159/328 (48%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+MGG S E VSL SG+ +L+ + V ++ V + L Sbjct: 17 VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76 Query: 50 ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D+ FN++HG GE+G +QA + + YT G SAL+ +K + V Sbjct: 77 SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136 Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P S+ + + + + P +KP + GSSLGI +K + Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++LIE ++DG+E++ GV+ L +TEI V +F+ YE KY S Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEI-VSHKEFFDYEAKYE-GAS 252 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + ++V+ +A A+ ++G G SRS+F+ + + LE+N PG +P Sbjct: 253 EEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPA 310 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299 SI P+ A G S ++L VE A Sbjct: 311 SILPQQAKIYGISIKDLCGNEVEKALAK 338 >gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2] Length = 371 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 64/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG SSE VS + A+ D ++V I + ++ + Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 50 ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75 D+ F +LHG +GEDG +Q + EL Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127 + + SG+ ASA SMDK +K +++ G+P CP LV ++ + P Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---D 184 +KP + GSS+G+ ++ + + L S++ H ++++E V G E+ C V+G D Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQAL--RSAFEHDSKVIVEPQVVGREIECAVLGSVHD 247 Query: 185 ASLDVT---EIAVP-KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V+ EI V + FY +E KY + ++ PA++ +Q L+ + Sbjct: 248 REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFD 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR D +V EIN PG TP S +P M + +G + L+ ++ A Sbjct: 308 CTGLSRVDTFVTDA-GEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363 >gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] Length = 424 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 41/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 86 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + ++ P +KP GSS+GI + Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYEL 204 + L ++ + ++L+EQ V+ E+ G++G+A + + V FY Y Sbjct: 206 LAGLRKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEVVKNVAFYDYHA 263 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAKI I ++ A A +AIG G+S DF + ++F E+N Sbjct: 264 KYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNELNT 322 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T ++P + G + EL+ +V Sbjct: 323 MPGFTQWFMYPLLWDNMGLGYPELIEKLV 351 >gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] Length = 324 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 98/324 (30%), Positives = 167/324 (51%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++MGG SSE ++S+ SG L+ + V ++ + + +VL Sbjct: 5 IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64 Query: 48 -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 H+K D FN +HGN GE+G++ + LELL IP+T + AL+ +K + VV Sbjct: 65 SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ + + + + P IKP GSS GI ++ I +L+ Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++N +LIE +++G E++ GV+ L +TEI V ++DF+ YE KY S Sbjct: 185 --AYNEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEI-VSENDFFDYEAKYE-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I K V+ +A ++ + G SR++++F ++ + ++LEIN PG+T S Sbjct: 241 EITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S +L ++ A Sbjct: 299 ILPQQAKEAGISLAQLFDNAIQMA 322 >gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 354 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 149/346 (43%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG+SSE +S S A + L +K+ + + + V P Sbjct: 7 LAVIYGGMSSEHSISCISAGAIMAELPKDKYKIFPVGITQDGVWVEGTTDPVGDSQLPSV 66 Query: 52 ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D F VLHG +GEDG +Q +L+L +PY Sbjct: 67 AGEREVALSVNPSRRGEFYDARTGEVLATIDAVFPVLHGTYGEDGTIQGLLDLAGVPYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138 G+L+SA SMDK +K V S VPV +++ + + P +KP +GGSS Sbjct: 127 PGVLSSACSMDKQFTKIVARSADVPVTREVVLVDDEHLDDSDRDYLGLPVFVKPARGGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-- 196 +GI + + D + + +++IE + G E+ GV+ + D+ K Sbjct: 187 IGINKVDSWDQL--DDAVRFARLYDSKVIIEAELVGDEVEVGVIERPNGDLIASPPAKLN 244 Query: 197 ------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 FY +E KY T +PA + +++ LA +A+ CRG++R DF Sbjct: 245 GTSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEELAIRTFRALDCRGLARVDFFV 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T +S+FP++ AG S+ ELL ++ A Sbjct: 305 TSEG--PMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLETLIATA 348 >gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 288 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 173/299 (57%), Gaps = 14/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + + ++ DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK+ +K++ S GV + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTYS------N 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P ++KP K GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGYA-----MIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDALA 288 >gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] Length = 377 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 159/369 (43%), Gaps = 76/369 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S +A++ F V + + ++ ++ P Sbjct: 6 IMVLYGGRADEHSISCISTAGVLNAIDAERFDVVPVGITKTGQWIVGGEDPRSWSLDDGT 65 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D F VLHG +GEDG VQ Sbjct: 66 LPEVVATADSRAVTLDVSRGQDGFFADDPGQPDHVISLGHIDAVFPVLHGVYGEDGTVQG 125 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQH 122 +LE++ +PY G+ ASA MDK +K V+++ G+P P I+V+ + + Sbjct: 126 LLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIMVDARHATGESVYDEVKKA 185 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-----NHGDQLLIEQYVDGIEL 177 ++ P +KP + GSS G+ +++ + + H ++L+EQ +D E+ Sbjct: 186 KLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAALEAAVAEAGKHDWKVLVEQGIDAREI 245 Query: 178 TCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYK 225 C V+ A D E + P FY ++ KY +++HV PA +P+ + + Sbjct: 246 ECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYDFDSKYMDSSASHVEVPANLPVSVLE 305 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +V+ +A A A+ G+SR D P V EIN PG TP+S++P+ +G + Sbjct: 306 DVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDASGIGY 364 Query: 286 RELLLWMVE 294 EL+ ++E Sbjct: 365 TELITRLIE 373 >gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] Length = 405 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 80/373 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S + + F+ I + + ++ + P Sbjct: 30 IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 89 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG +GEDG +Q +L Sbjct: 90 PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 149 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120 E++ +PY G+LASA MDK +K ++ + G+PV P I V+ + DS Sbjct: 150 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 209 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP + GSS G+ + ++ L + H ++L+E+ Sbjct: 210 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 269 Query: 172 VDGIELTCGVM----GDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPL 221 + E+ C V+ GD ++ FY ++ KY +++HV PAK+P Sbjct: 270 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 329 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +EV+R+A A A+ G+SR D V EIN PG TP+S++ + Sbjct: 330 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTE-EGTVIVNEINTLPGFTPISMYSKAWEAT 388 Query: 282 GYSFRELLLWMVE 294 G S+REL+ ++E Sbjct: 389 GVSYRELITTLIE 401 >gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] Length = 288 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 172/299 (57%), Gaps = 14/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + +++ + DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK+ +K++ S GV + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTFT------T 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P ++KP K GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 117 VAEISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGYA-----MIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDALA 288 >gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] Length = 702 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 8/297 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L+GG S+ERE+SL SG A A AL + GF V+ DV L+ + D+ + VLHG F Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTE-CRLLPEMREADVVYPVLHGGF 377 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q ++E + + SG AS L+MDK+ +K+++ G+P +V R + Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++K GS+ GI+ +++ + L + + +LL+E+Y+DGIE+T ++ Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFA--MAGELLVEEYIDGIEITVPIV 495 Query: 183 GDASLDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239 L EI P FY Y+ K Y ++ + PA+ + + + R A + G Sbjct: 496 NGEVLPAIEIKSPH-GFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR I R DF+ + LE N PG T S+ P+ A +G SF ++ +V A Sbjct: 555 CRDILRVDFIV-GKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAA 610 >gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] Length = 400 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 80/373 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S + + F+ I + + ++ + P Sbjct: 25 IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 84 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG +GEDG +Q +L Sbjct: 85 PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 144 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120 E++ +PY G+LASA MDK +K ++ + G+PV P I V+ + DS Sbjct: 145 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 204 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP + GSS G+ + ++ L + H ++L+E+ Sbjct: 205 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 264 Query: 172 VDGIELTCGVM----GDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPL 221 + E+ C V+ GD ++ FY ++ KY +++HV PAK+P Sbjct: 265 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 324 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +EV+R+A A A+ G+SR D V EIN PG TP+S++ + Sbjct: 325 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTE-EGTVIVNEINTLPGFTPISMYSKAWEAT 383 Query: 282 GYSFRELLLWMVE 294 G S+REL+ ++E Sbjct: 384 GVSYRELITTLIE 396 >gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] Length = 311 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 8/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG ++ER VSL SG+ A+ L G +V ++D + G D AFN+LHG Sbjct: 11 LAVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVDTADN-GWQQQLKGVDFAFNLLHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE IPY+ SG+L SAL+MDK R+K + + G+P +L+NR + Sbjct: 70 PGGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNR-DSEW 128 Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q +I P +KP + GSS+G+ + ++S +G ++ EQY++G E T Sbjct: 129 QAIIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAAS--YGTAVMAEQYIEGSEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L I + FY +E KY S ++ P+ + + +LA A A Sbjct: 187 VAILGDRALPSIRIET-DAAFYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAAT 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G R D + LE+N PGMT S+ P A AG S ELL + Sbjct: 246 GASVWGRVDV-LRRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELLAAI 298 >gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 287 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------RP 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284 >gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46] gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46] Length = 324 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ ++++IE ++ G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_32L01] Length = 281 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 144/262 (54%), Gaps = 15/262 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ V S+ G+P Sbjct: 12 EFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTR 71 Query: 110 SILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 S++++R + + + P +KP GSS+GI + + L + Sbjct: 72 SVVIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGI- 130 Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE V+ E+ C V+G + +V+ + VP ++FY Y KY +T ++PA Sbjct: 131 -YDTKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 189 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P ++Q ++ A +AI C G++R DFL ++F EIN PG TP+S++P++ Sbjct: 190 DLPEATVSQIQEMSIRAFRAIDCSGLARVDFLIS-QDGEIFLNEINTMPGFTPISMYPKL 248 Query: 278 AAYAGYSFRELLLWMVEDASCL 299 AG S+ +L+ +++ A Sbjct: 249 WEEAGLSYPDLIDKLIQLALAR 270 >gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 287 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284 >gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A] gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] Length = 324 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ ++L+E ++DG ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAQEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9303] gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303] Length = 353 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 156/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + V+ GG S E VS+ S AL F+V I +D+ VL Sbjct: 8 VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +P + + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 GQPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132 +L SALSMDK+ K ++ G+P P V+ + + + + P +KP Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYFAVDAADLLDTESRQGVAKNLEAKLKYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + L +++S + ++++EQ V EL C V+G L V Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDR--RIVVEQGVSARELECAVLGKRELQTSVV 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y Y+ KYS S ++PA +P + +++ LA A + + G++R DF + Sbjct: 246 GEICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S++P + +G + EL+ +V A Sbjct: 306 NAARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351 >gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 324 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++L+E ++DG+E+TCG V V ++++ Y+ KY+ S Sbjct: 185 --AFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLEIKDVMTDIIEN 322 >gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp Length = 307 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 150/303 (49%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSE++VS+ +G + L+ +++ I ++ L+ D A LHG Sbjct: 6 IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG VQ LE L IPY+ S L+S + DK SK+++ G+ I + + Sbjct: 66 KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLETVFEW--DSEVVIEKYIKGEEI 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + L + I ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 184 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + E+N PG T S+ P+ A AG + +LL ++E + Sbjct: 242 LKCSVYARVDXXV--KDGIPYVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIETSL 299 Query: 298 CLR 300 +R Sbjct: 300 RVR 302 >gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 367 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 160/357 (44%), Gaps = 60/357 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S E VS S + ++ F V+ + + + + Sbjct: 8 VAVVFGGRSGEHPVSCISAAGVLANIDTDLFDVTAVGITPAGRWLQMDPAAIPTTGGPTL 67 Query: 46 -LAHLKPDLAFNV----------------------------LHGNFGEDGLVQAILELLE 76 +A V LHG +GEDG +Q +LEL Sbjct: 68 PEVSTGSAVALPVDPTAAALVSIDPSVDRSAVVDVEVVFPVLHGPYGEDGTIQGLLELAG 127 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132 +PY +G+LASA +MDK +K+++++ G+PV +++ T + + + P +KP Sbjct: 128 VPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASL 187 + GSSLG+ + + LD + + ++L+E V G E+ CGV+ + Sbjct: 188 ARAGSSLGVSRV--AEWAELDRAIAIARETDPKVLVEAAVVGREVECGVLEHPDGRIEAS 245 Query: 188 DVTEIAVPKS-DFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 EI V +FY ++ KY + +PA +P ++ + L+ A A+ +G++R Sbjct: 246 PPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQGLAR 305 Query: 246 SDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF P +V E+N PG TP+S++P M A AG S+R+L+ ++ A Sbjct: 306 VDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTALAR 362 >gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 329 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG +SE VSL S + S ++ + + + + VL Sbjct: 5 IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +KK + I + + Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++E +++G ELTCG +TE+ V ++++ YE KY+ S Sbjct: 185 --AFEEAREVVVEAFMEGTELTCGCYKTKDKSIVFPITEV-VTHNEYFDYEAKYN-GESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP + VQ+L + +G +GI R D++ K+ LE+N PGMTP S Sbjct: 241 EITPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9515] gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515] Length = 355 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E VS+SS K AL F++ +++ + Sbjct: 9 IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L D+ F +LHG GEDG + +L+ + P Sbjct: 69 NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIK 131 GI SA+ MDK+ KQ+ S+ +P + + + + + ++ P +K Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I L + +W +++IE+ ++ EL CG++G+ L ++ Sbjct: 189 PANSGSSLGISKAKNKSEIIKALQK--AWEIDSRIVIEEGLNVRELECGIIGNLKLSTSK 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I SD+Y Y+ KYS+ N ++PA I I ++++ LA + +A+ G +R DF Sbjct: 247 IGEVSYSSDWYDYDSKYSTDN-KIIIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +SRK+F EIN PG T S+FP + +G + +L+ +++ Sbjct: 306 LEKISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350 >gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601] gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601] Length = 355 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQI---------DVDRSVGLVLA 47 + ++ GG S+E EVS+SS K A + F + D D S +++ Sbjct: 9 IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68 Query: 48 HLK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F +LHG GEDG + +L + P Sbjct: 69 ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GI+ SAL MDK+ K + S+ +P ++ ++ + + ++ P +K Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + I L + +LIE+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINKSEIIPAL--EKARGIDPSILIEEGLEVREIECGIIGNSKLLTSE 246 Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I KSD+Y Y KY S N ++PA+I I KE++ +A + +A+ G +R DF Sbjct: 247 IGEVNYKSDWYDYNSKYHSNN-KIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+F EIN PG T S+FP + +G +L+ +V+ Sbjct: 306 LEKSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350 >gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ ++++IE ++ G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 334 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 158/330 (47%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG + E EVS S S L+ + V I + + Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVP---VCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 G+P + S+L+ Q +S PY +KP GGSS+G+ +K ++ + Sbjct: 125 --AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182 Query: 153 DLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206 + ++ + N G Q+++E++V G E + G+ + L TE+ + +F+ YE KY Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + + PA + + + L + + C+G+ R DF + + K +++EIN P Sbjct: 242 TPGLTEEITPADLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIP 301 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G T S P+ AG + ++E A Sbjct: 302 GQTAQSFIPQQVRAAGMKETDFYGELIEVA 331 >gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ +++L+E +++G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLEIKDVMTDIIEN 322 >gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] Length = 287 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 154/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++L+E ++ G+E+TCG V V ++++ Y+ KY+ S Sbjct: 183 EKAFKEAREVLVEAFMQGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322 >gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 305 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 13/301 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER+VS+ SG + +LE G +V D+ R L LK DL F LHG Sbjct: 5 IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFTMD 119 FGEDG VQ ++EL +PYT S SA+ DK + ++V + +P+ ++ D Sbjct: 65 KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLWKKVI---SEKD 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKP + GSS+G+ + D + L + D LL+E+Y+DG E+T Sbjct: 122 LEGWKIFPCVIKPTREGSSIGVFIC--DDASTLINRTRLLLDVYDSLLLEEYIDGREITV 179 Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ G L V EI PK FY YE KY+ + V+PA I + + + + Sbjct: 180 SIIDSREGIKVLPVLEIK-PKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCR +R D + ++LE+N PGMT +S P A AG +F +++L ++E Sbjct: 239 KLLGCRDFARVDGIL--KGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIEA 296 Query: 296 A 296 A Sbjct: 297 A 297 >gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018] gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] Length = 381 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA++++ F++ +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFRMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAETRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS---------- 120 E++++PY G+LASA MDK +KQ+ + G+ V P I V +F D+ Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFASDAANHFDAYANE 185 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVYEASKHDWRVLVEQGIDA 245 Query: 175 IELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLD 222 E+ C V+ D + + P + FY ++ KY ++HV PA +P + Sbjct: 246 REIECAVLAARDGDEPQASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPEE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V+ A A +A RG+SR D P V EIN PG TP+S++P+ G Sbjct: 306 TLQRVRNTALAAFKAADGRGLSRVDSFVTP-EGHVMINEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ ++++IE ++ G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3 str. Ether] gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] Length = 353 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + G+S+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2] gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ +++++E ++DG ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis] Length = 352 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 97/337 (28%), Positives = 164/337 (48%), Gaps = 47/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG+SSE EVSL S A +E + V +I + L Sbjct: 4 VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +KPD+ F VLHG +GE+G +Q + ELL+IPY G Sbjct: 64 LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSS 138 I A+A+SM+K+ Q + GV PS+++ + + P IKP + GSS Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQKVDAFAKIHGFPLYIKPNEAGSS 183 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-- 196 GI +++ + + ++S + ++LI++ V G+E+ CG++G+ L V E Sbjct: 184 KGISKVERKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGCGILGNEQLVVGECDQISLV 241 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 F+ YE KY+ + + +LPAK+ +D +++Q A ++ +GC+G++R DF + Sbjct: 242 DGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLT-DDGE 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + EIN PG T S FP M G ++E++ ++ Sbjct: 301 ILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLL 337 >gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 158/322 (49%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 + + ++L+E ++DG+E+TCG + V V ++++ Y+ KY+ S Sbjct: 185 AFA--EAKEVLVEAFMDGMEITCGCYKNKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 301 IPQQVRAANLESKDVMTDIIEN 322 >gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] Length = 382 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 168/345 (48%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ ++VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L L+ +K DL V+HGN GEDG VQ++ LL PY SG Sbjct: 68 AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I +SA+S DK +KQ+++ G+ ++V + +KP + GS Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193 S+GI + + D +++ ++L+E+ + + E+ C V+G+ + + I Sbjct: 188 SVGIYKVSNKEEF--DKAIQDGFHYDFKILVEETIANPREVECSVLGNRDIKASKLGAIR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP D FY Y K+ + +P ++P ++ KE+Q+++ A + +G RG++R DFL D Sbjct: 246 VPAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ A +G ++++LL +++ A Sbjct: 306 END-VPYFGEVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQLA 349 >gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 334 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 158/330 (47%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG + E EVS S S L+ + V I + + Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVP---VCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 G+P + S+L+ Q +S PY +KP GGSS+G+ +K ++ + Sbjct: 125 --AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182 Query: 153 DLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206 + ++ + N G Q+++E++V G E + G+ + L TE+ + +F+ YE KY Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + + PA + + + L + + C+G+ R DF + + K +++EIN P Sbjct: 242 TPGLTEEITPADLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIP 301 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G T S P+ AG + ++E A Sbjct: 302 GQTAQSFIPQQVRAAGMKETDFYGDLIEVA 331 >gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343] gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC 9343] Length = 324 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ ++++IE ++ G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] Length = 353 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + V+ GG S E VS+ S AL F+V + +DR Sbjct: 8 VGVVFGGESGEHAVSIQSALTVIKALIAPDNQDRFEVIPVYIDREGRWWGPTVAQRVLDQ 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 NHAINSEDLPQPLPAPGLRQWPVDPDTVDIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+ P + +N ++ + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYLGLNAIDLEEPERLEQLLTRLEKELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L Q++ +LL+EQ V EL C V+G L + + Sbjct: 188 ANLGSSVGITKARTRDELLDGLHQAAVL--DTRLLVEQGVKARELECAVLGRRHLRASVV 245 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y YE KY+ S ++PA +P + +++Q +A A QA+ G +R D + Sbjct: 246 GEIRFDADWYDYETKYTEGRSQTLIPAPLPASVSQQIQAMAIRACQAVHAYGQARVDVFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S +++ EIN PG T S++P + G +L+ +V+ A Sbjct: 306 DETSGQIWLNEINTLPGFTSQSMYPTLWEATGIPLPQLVAQLVDTA 351 >gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] Length = 326 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+++ + D I P IKP GGSS G+ +K ++ I + + Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++E ++DG E+TCG +TE+ V ++++ Y+ KY+ S Sbjct: 185 --AFEEAQEVVVEAFMDGTEITCGCYKTKDKAVVFPITEV-VTHNEYFDYKAKYN-GESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQALTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322 >gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 374 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + +L GG SSE +VS S A++ +++ + ++ Sbjct: 13 VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 72 Query: 44 LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V+A P D+ + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 73 QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 132 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 +LASA S DK +KQ+++ + ++V D Q + IKP GS Sbjct: 133 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 192 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI + +Q L + +++ ++L+E+ +D E+ C ++G+ + + I Sbjct: 193 SIGIHKAENEQEYLDGLADAFKYDY--KILVEESIDNPREVECSILGNENPKASKLGAID 250 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK+D FY Y K+ + T LP ++P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 251 VPKTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVS 310 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + EIN PG T +S++P++ +G S+ L+ +++ Sbjct: 311 E-DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQ 352 >gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30] gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10] gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus] gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30] gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10] Length = 350 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 TISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] Length = 358 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S+E EVS+ S AL+ + + I V +++ + Sbjct: 10 VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69 Query: 52 ----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K+++ G+P SI ++ + + + + P IKP + GSS+ Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAV 194 G+ + + + + H ++LL E++V G E+ V+ D +L V+ EI Sbjct: 190 GVSKVMTAADFKAAVQE--GFKHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FY+Y+ KY + +PA++P ++ ++ LA A +A+GC G++R DF Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V E+N PG T +S++ + A +G ++ E++ ++ Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347 >gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 158/336 (47%), Gaps = 41/336 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 ++VL GG S ER+VS++S AL G +V +D R A + Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV I ++ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWI-IDPEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + +P L + +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAEELPAALELA---RRHGTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + PA +P ++ +E + A AH+ + G SRSDF D ++ +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLDDA-GALWIIEANS 297 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG+T S+ P+ AA G + EL + A R Sbjct: 298 LPGLTATSLLPQSAAAVGIGYPELCDRIARIALRGR 333 >gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 287 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 108/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ + G+ V S D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------RD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLR------KPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] Length = 287 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] Length = 287 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 109/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ S G+ V S D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAESIGIRVPKSY------RD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLR------KPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAERIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 287 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDETNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++KQ+ + G+ V S D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------AD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LESIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKVK------KPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] Length = 373 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 156/365 (42%), Gaps = 71/365 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKPD 52 +AVL GG S+E VS S A L+ ++V + + + V L D Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSQLRADGRD 72 Query: 53 L-----------------------------------------AF-------NVLHGNFGE 64 + F VLHG GE Sbjct: 73 MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121 DG VQ +L+L + Y +G+LASA MDK +K++ G+PV +++ T + + Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILLQPRELTAEEK 192 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP +GGSS+GI + + D +++H +++++E + G E+ CGV Sbjct: 193 ARLGLPVFVKPARGGSSIGISKVDSWEEF--DAAVDLAFSHDNKVIVEAMIHGAEVECGV 250 Query: 182 MGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 + A + FY ++ KY + +PA +P + KE+++LA Sbjct: 251 LQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETLKEIRQLAIR 310 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+GC GI+R DF EIN PG TP+S++P+M A G SF +L+ ++ Sbjct: 311 TFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTPISMYPKMFAADGVSFGDLVSALI 368 Query: 294 EDASC 298 A Sbjct: 369 ARALA 373 >gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11] gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] Length = 287 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKVPKAY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEKIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKRLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] Length = 324 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+ MGG SSE ++SL+SG ++ + ++ + D Sbjct: 5 VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++ D+ FN++HG GEDG +QA LELL IP T ++AL+ +K + V+ Sbjct: 65 SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ ++ +N+ + P +K K GSS GI + + P L Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKALDV 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++L+E ++DG E++ GV+ +L +TEI V ++DF+ YE KY+ S Sbjct: 185 --AFKEDDEVLVESFLDGTEVSVGVITYNTTITALPITEI-VSENDFFDYEAKYN-GQSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I EVQ++A ++ + +G++R++F+F + + +LE+N PG++ S Sbjct: 241 EITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIFH--NNEPHFLEVNTCPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S ++L ++ A Sbjct: 299 IIPQQAAEAGISLKDLFSNVIAAA 322 >gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 370 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + +L GG SSE +VS S A++ +++ + ++ Sbjct: 9 VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 68 Query: 44 LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V+A P D+ + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 69 QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 +LASA S DK +KQ+++ + ++V D Q + IKP GS Sbjct: 129 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193 S+GI + +Q L + +++ ++L+E+ +D E+ C ++G+ + + I Sbjct: 189 SIGIHKAENEQEYLDGLADAFKYDY--KILVEESIDNPREVECSILGNENPKASKLGAID 246 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK+D FY Y K+ + T LP ++P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 247 VPKTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + EIN PG T +S++P++ +G S+ L+ +++ Sbjct: 307 E-DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQ 348 >gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 351 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 165/342 (48%), Gaps = 54/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 +AVL GG S+ER VSLSSG +AL G+ + ID Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62 Query: 38 -------------------VDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73 D +VGL ++ P D F LHG GE+G VQA+L+ Sbjct: 63 TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAADFVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKP 132 L I YT SG LAS ++MDK SK+++ + +++ + + Q P V+KP Sbjct: 123 LNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G ++ + + ++ D++++E+++ G E + GV+ ++ EI Sbjct: 183 NSGGSSIGTRIVHDEAEL--AESLKDAYRFDDEIIVEEFITGREFSLGVVNGQAMPAIEI 240 Query: 193 AVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V +Y YE K+ + ++T V P +I D++ E++R+A A+G R DFL + Sbjct: 241 VV-NDGWYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLTN 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ +E N PGMTP+S+ P+ A AG S+ +L +V Sbjct: 300 DTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIV 339 >gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] Length = 355 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 161/345 (46%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40 + ++ GG S+E EVS+SS K A + FKV +D+ Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + D+ F +LHG GEDG + +L+ + P Sbjct: 69 EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + ++ + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ ++L+E+ ++ E+ CG++G++ L +E Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQ--KIDSRILVEEGLEVREIECGIIGNSELLTSE 246 Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I K SD+Y Y+ KY S N ++PA+I I KE++++A + +A+ G +R DF Sbjct: 247 IGEVKYESDWYDYDSKYYSNN-KIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 306 LEKYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 341 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ +++++E ++DG ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ +SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241 Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345 >gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] Length = 473 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 143/256 (55%), Gaps = 13/256 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG VQ +LEL IPY +G+L SA+ MDK K++ + G+PV P + Sbjct: 167 DVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPVVPFL 226 Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +V + + + P KP GSS+ I + + + L ++ +++ Sbjct: 227 VVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAFAYDR 286 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ VD EL V+G+ + P+++FY+YE KY+ + ++PA +P Sbjct: 287 --KVVVERGVDARELEISVLGNDEPVASLPGEIRPRAEFYTYEAKYTEGGAELIVPASLP 344 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + E+QRLA A QAI G++R DF + + ++ EIN PG T +S++P++ Sbjct: 345 PRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMYPKLWEA 404 Query: 281 AGYSFRELLLWMVEDA 296 AG S+R+L+ ++E A Sbjct: 405 AGLSYRDLITRLIELA 420 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 + +L GG S E EVSL S ++ A++ F+ I + R+ +L Sbjct: 49 VGILFGGRSGEHEVSLMSARSVYRAIDRERFEPVPIGITRAGQWILPR 96 >gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] Length = 389 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 151/355 (42%), Gaps = 65/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG S E +S ++ A++ + V + + VLA Sbjct: 27 VMVLFGGRSGEHAISCATAGGVLRAIDRDRYDVVAVGITSDGRWVLADDDADHWAIRDGR 86 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 87 LPRVEDTATHVLLPQGTTDREVQVLRDGVLGAPLGAVDVVFPLLHGPFGEDGTLQGMLEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPP 127 ++ Y SG+LASA+ MDK K V++ G+ V P ++ + P Sbjct: 147 ADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFRVLPPGREPDAATLDAVVADLGLP 206 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP + GSSLGI + L +++ H ++++E + G E+ CGV+G S Sbjct: 207 LFVKPARAGSSLGISRVDDK--ADLADAIAAARVHDPKVIVEAALFGREVECGVLGGRSG 264 Query: 188 DVTEIAVP--------KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++P + FY +E KY T PA +P D+ VQ +A A +A+ Sbjct: 265 APPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSCPADLPDDVVARVQDVAVRAFEAV 324 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GC G++R D P +V EIN PG TP S++P M A +G + L+ +V Sbjct: 325 GCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWAVSGLDYASLVDELV 378 >gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] Length = 326 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++L+E ++DG E+TCG +TE+ V ++++ YE KY+ S Sbjct: 185 --AFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYN-GASD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM] gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM] gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 360 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L+ P+ +LA+A Sbjct: 67 VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195 +G+ + + ++ + D++L+E+ V G E+ V+G+ V +I Sbjct: 187 VGVNHVTNAEEYAA--ALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 K FY+YE KY +++ + PA +P DI V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP-D 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ +++ Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343 >gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20] gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20] Length = 350 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ +SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241 Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345 >gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 287 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 162/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG A +L+ G+ + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ S Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTKQIAQSVGIKTPKSY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 355 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 56/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE VS S + ++ + V + + +L Sbjct: 6 ILVIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +K D AF VLHG +GEDG +Q + EL ++PY Sbjct: 66 GTVQAVLSPDATEKSVIVIDGAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIK 131 G+LASA+SMDK +K + GV V + + + + P IK Sbjct: 126 GVLASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS G+ + + + L +++ H ++L+E+ + G E+ C V G+ V Sbjct: 186 PSNAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIA 243 Query: 192 IAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V + + FY +E KY + S V+ ++P D + V+R A +A+ G++R D Sbjct: 244 SGVGEVLAAAQFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 F V + EIN PG T +S++P + AG S EL+ ++E Sbjct: 304 FFVTK-DGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLIEH 350 >gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] Length = 364 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 51/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S E EVSL S + + L+ + + + +D+ + Sbjct: 7 LVLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKDGLFYVHQYEDLLAYKDKLP 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 67 VVTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLG 140 MDK +++V G+ L++ RF D P +KP GSS+G Sbjct: 127 GMDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VTEIA 193 I K + + + + + +++L+E +V+G E+ V+ A EI Sbjct: 187 IHKAKSMDELVVAVDDAL--RYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEIR 244 Query: 194 VPK-SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V FYSY KY S + ++PA + + E+++ A + C+G++R DF + Sbjct: 245 VHHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFVN 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T +S++P++ +G ++ +LL ++ A Sbjct: 305 DKTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLLDELIRIA 349 >gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 329 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E VSL SG+ +L+ + V ++ V + L Sbjct: 8 VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN++HG GE+G++QA + + YT G SAL+ +K + V Sbjct: 68 SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127 Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P SI + + + + P +KP + GSSLGI +K+ + Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKSELIAA-- 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++LIE +++G+E++ GV+ L +TEI VP ++F+ YE KY S Sbjct: 186 TEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEI-VPTNEFFDYEAKYE-GAS 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + K V+ +A A+ ++G G SRS+++ + + LE+N PG +P Sbjct: 244 EEITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYIL--MDGIPYMLEMNTNPGFSPA 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A + G S +L VE A Sbjct: 302 SILPQQAKHYGISIMDLCGNEVEKA 326 >gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] Length = 380 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 156/372 (41%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFRMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLVRKADDTLESLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120 E++++PY G+LASA MDK +KQ+ + G+ V P I ++ S Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDSTNRFAAYANE 185 Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP + GSS G+ ++ + L + H ++L+EQ ++ Sbjct: 186 MLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESHDAKALAQAVFEASKHDWRVLVEQGINA 245 Query: 175 IELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLD 222 E+ C V+ + ++++P + FY ++ KY ++HV PA +P + Sbjct: 246 REIECAVLAARDGEEPKVSLPGEIVLDKRQAGEDQFYDFDSKYMDSAASHVEVPADLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D P V EIN PG TP+S++P+ G Sbjct: 306 TLELVRKTALAAFKAADGRGLSRVDSFVTP-EGHVMINEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYGDLITKLIE 376 >gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 162/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG SSE VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSSEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIQPLFEENGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+IL+ Q + P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 242 AISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342 >gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+LMGG SSE EVSL S L+ ++ I + D Sbjct: 4 IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + AFN +HG GEDG +QA + IP T + ASAL+ +K V+ Sbjct: 64 SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +NR T + + P +K + GSS+G+ ++ I D Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDI--DEAI 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE+++ G E++ GV+ L +TEI V ++DF+ +E KY S Sbjct: 182 EKAFEVDSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEI-VSENDFFDHEAKYE-GKSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ + K+V+ +A + + +G SRS+++ ++ + LE+N PG+T S Sbjct: 240 EITPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKAS 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG + L +E+A Sbjct: 298 ILPQQAKAAGITLANLFDNAIEEA 321 >gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 371 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 164/366 (44%), Gaps = 69/366 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +S + +A++ F+V + + R + P Sbjct: 5 VALLFGGRSGEHGISCVTAGGILAAIDRERFEVIALGITREGRWLHVSDDPSDWTLVDGR 64 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ + +LHG +GEDG VQ + Sbjct: 65 APEIDPSGNEVLLPHSRHRPGERITLRTVRDGLIQDLADVDVFWPLLHGVYGEDGTVQGM 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP--- 126 LE+L+IPY SG+LASA +MDK +K V+ + G+ P I+V +R+ +S + + Sbjct: 125 LEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGIVVHEDRWAEESHRVATYLRR 184 Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P+ +KP + GSSLG+ + + + ++ + ++L+E+ +D E+ CGV+ Sbjct: 185 NHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMKEAFA--EDPKVLVEEGLDAREVECGVL 242 Query: 183 GDA-------SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234 A +L +FY YE KY + + PA +P + +EV+ + A Sbjct: 243 QGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSIDVPAALPDAVLEEVRETSCRA 302 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G G++R D +V E+N PG TP S+FP + G S+ +L+ ++E Sbjct: 303 FRALGLEGLARVDMFVT-SDHRVLINEVNTMPGFTPYSMFPVLWENMGLSYADLIAELIE 361 Query: 295 DASCLR 300 A R Sbjct: 362 QARSRR 367 >gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] Length = 356 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 153/351 (43%), Gaps = 59/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + +L GG S+E EVS S A+ +KV I + +S + Sbjct: 6 LVLLFGGQSTEHEVSCRSVLTIKRAVNQEKYKVLCIGITKSGEWIPVEKEESIEDGSWKE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 K D+ F VLHG GEDG +Q +LE+ IPY Sbjct: 66 SAERAMILPDAKLSSVLFLGKNGESHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVG 125 Query: 82 SGILASALSMDKMRSKQV----VSSCGVPVCPSILVNRFTMDSQHL--------ISPPYV 129 G+L+SA+SMDK+ +K ++ GV I R ++Q +S P Sbjct: 126 CGVLSSAISMDKVYTKMAVEKPLAKIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS G+ K +++ + + S + ++L+E+ + G EL C V V Sbjct: 186 VKPSNAGSSCGVSKAKDREALKKAVENALSVDR--RVLVEESITGRELECAVFSGKEGQV 243 Query: 190 ----TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + ++FY Y+ KY++ +S L I +I +++++ A A+ +SR Sbjct: 244 ESSSVGEILAAAEFYDYDAKYNNPDSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V + EIN PG T +S++P + GYS EL+ ++E A Sbjct: 304 VDFFL--SGEEVIFNEINTMPGFTSISMYPMLFKKKGYSIEELVEKLLESA 352 >gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] Length = 324 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q ++L IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+L+ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213 ++ +++++E +++G ELTCG V V ++F+ Y+ KY+ Sbjct: 185 --AFGEAEEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ VQ+L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 242 ITPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322 >gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] Length = 378 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + ++ ++ P Sbjct: 6 IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 66 PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----------------T 117 ++ +PY G+ ASA MDK +K ++++ G+PV P I ++ Sbjct: 126 MMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAPGITLDARDCDAACAFAANGETMLA 185 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP + GSS G+ ++++ + L + +H ++L+EQ +D E Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + D + P FY ++ KY ++HV PA +P + Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + V+ A A +A+ G+SR D KV EIN PG TP+S++P+ G S Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLISTLIE 374 >gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 319 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S EREVSL SG+ A AL D D ++ L PD F VLHG Sbjct: 12 VIVLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG ++ +LEL+ +PY + A ++ DK +K VV + G+ PS+ + + Sbjct: 72 SMGEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHD 131 Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP +GGS+LG V+++ +P ++ + +GD LIE+ Sbjct: 132 LGAAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAMV--GCFAYGDAALIER 189 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +++G E+ V+ +L EI VP + Y Y +Y + ++ V PA++P ++ + Sbjct: 190 HIEGTEVAVSVIERDGEPVALPAVEI-VPAGELYDYTARYDAGDTEFVTPARLPEEVARR 248 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A AH+A+G R +SR+D + D +V +LE+NV PGMT S+FP A AG + Sbjct: 249 AAEAAVTAHRALGLRDLSRTDLIVDEA-GQVHFLEVNVAPGMTETSLFPRAVAAAGLNLG 307 Query: 287 ELLLWMV 293 +L ++ Sbjct: 308 RILHDLI 314 >gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] Length = 321 Score = 278 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 14/258 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ D F VLHG GEDG +Q +L+L IP+ L+SAL MDK + V+ + G+ Sbjct: 66 LRIDCVFPVLHGRNGEDGTIQGLLKLAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTA 125 Query: 109 PSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + + +S P +KP GSS+GI +S+ + ++ Sbjct: 126 NWDQIQKTELPQLNEKCEQFIDKLSLPIFVKPANAGSSVGITKATDFESLREGIK--FAF 183 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218 H ++++E+ + G E+ C V+G+ + + + +P ++FY Y+ KY S +S +PA Sbjct: 184 THDSKVIVEEMLSGKEVECAVLGNDAPQASALGQIIPCNEFYDYDAKYQS-DSELKIPAD 242 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + VQ A A+QA+GC G++R DF V+ E N PG T +S++P++ Sbjct: 243 LDEVTTRRVQETAVRAYQALGCSGLARVDFFVSE-DGTVYLNEPNTLPGFTSISMYPKLW 301 Query: 279 AYAGYSFRELLLWMVEDA 296 Y+G + ELL +V A Sbjct: 302 EYSGLPYSELLERLVTLA 319 >gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 349 Score = 278 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG SSE E+S+ S + ++ +++ + + + + Sbjct: 4 LVIIFGGRSSEHEISVISATNVSKQVDTDKYELILVGITKEGKWLKVDSISSMEDGSWLN 63 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG FGEDG VQ +LEL +IPY Sbjct: 64 SKTSAYILPDATKKCIMVETGGEYKEVHVDVVFPVLHGLFGEDGTVQGLLELAKIPYVGC 123 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LASA+ MDK+ +K VV G+ V + + + P IKP Sbjct: 124 GVLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIEKIEGRFDYPVFIKPS 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVT 190 GSS G+ + + +L++ H ++L+E+ + G E+ CGV+ GD + Sbjct: 184 NAGSSRGVSKALDREELKKGILEAL--KHDRKVLVEETIVGHEVECGVLGRPGDVTASGV 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + FY Y+ KY + T + +K+P + +++ A A+ G+SR DF Sbjct: 242 GEIKSAATFYDYDAKYKLDSLTLL-DSKLPDGVREKLPEYAKKIFTALDGFGLSRVDFFA 300 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ + EIN PG T +S++P + AG ++L+ ++E A R Sbjct: 301 RE-DGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIELAFERR 349 >gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYAVSLASATSALEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus] Length = 350 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_47G05] Length = 345 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 53/330 (16%) Query: 15 SLSSGKACASALEDAGFKVSQIDVD----------------------------------- 39 S+ S ++ +A++ + V +D Sbjct: 2 SVVSARSVYAAIDRERYNVVLAGIDLQGRWCFGGKEARLLESATVVSDELVPARLSGVGA 61 Query: 40 ---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 G L + D+ F +LHG +GEDG VQ +LEL + Y +G+ ASAL MDK + Sbjct: 62 FLVSEDGDNLPDSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALA 121 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKD 147 + + ++ G+P ++ R + P +KP GSS+GI + Sbjct: 122 RAIFAASGLPQTQYTVIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDR 181 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYEL 204 Q + + L +S + +L++E+ V+ EL C V+G+ + + +P ++FY Y Sbjct: 182 QGLQVGLELAS--RYDTKLIVERSVENARELECAVLGNEFPQASGVGEIIPGAEFYDYTT 239 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY S V+PA + + +Q+LA +AI C G++R DF V EIN Sbjct: 240 KYIDDRSELVIPAVLEKSKTETIQQLAIQTFKAIDCSGLARVDFFM-CSDGSVLVNEINT 298 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG TP+S++P++ A AG ++ +L+ +++ Sbjct: 299 MPGFTPISMYPKLWAAAGIAYGDLIDRLIQ 328 >gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9313] gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313] Length = 353 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLA--------- 47 + V+ GG S E VS+ S AL F+V I +D+ A Sbjct: 8 VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67 Query: 48 ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 GHPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132 +L SALSMDK+ K ++ G+P P V+ + + + P +KP Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYAAVDAADLLETESRQGVAKHLEAKLKYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190 GSS+GI + + + L +++S + ++++EQ V EL C V+G L V Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDR--RIVVEQGVSARELECAVLGKRELQTSVV 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y Y+ KYS S ++PA +P + +++ LA A + + G++R DF + Sbjct: 246 GEICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T S++P + +G + EL+ +V A Sbjct: 306 NAARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351 >gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] Length = 426 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 13/256 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG FGEDG VQ +LEL IPY +G++ASA+ MDK K++ + G+PV P + Sbjct: 155 DVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLPVVPFL 214 Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 +V + + P KP GSS+GI ++ L ++ +++ Sbjct: 215 VVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEAFAYDR 274 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIP 220 ++++E+ VD EL V+G+ + P+ FY+Y KY+ S ++PA +P Sbjct: 275 --KVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIVPAPLP 332 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +E+QRLA A QAI G++R DF + + ++ EIN PG T +S++P++ Sbjct: 333 PRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYPKLWEA 392 Query: 281 AGYSFRELLLWMVEDA 296 AG +R+L+ ++E A Sbjct: 393 AGLPYRDLITRLIELA 408 Score = 66.3 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + +L GG S E EVSL S ++ A++ F+ I + R +L H P Sbjct: 44 VGILFGGRSGEHEVSLMSARSVFEAMDRRRFEPVPIGITREGLWILPHDAP 94 >gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 322 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 18/312 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 14 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L ++PY AS ++ DK +K V+ G+P + + Sbjct: 74 GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ S+P ++ + + L+E+YV Sbjct: 134 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMV--GCFAYDSTALVERYV 191 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ V Sbjct: 192 PGMDVAVSVVDLGEGAQALPAVEI-VPRNGVYDYAARYTAGRTTWHAPARLDPEVADAVA 250 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R+A AH A+G R ISR D + D + LE+NV PGMT S+ P AG F L Sbjct: 251 RVAVAAHTALGLRDISRVDLIVDA-DGQPHVLEVNVSPGMTETSLLPLAVQAAGLDFGRL 309 Query: 289 LLWMVEDASCLR 300 L +V A+ R Sbjct: 310 LGSLVSRAAARR 321 >gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 335 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 85/332 (25%), Positives = 157/332 (47%), Gaps = 41/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S L+ ++V I++ D Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V S++V + + I P +KP GGSS G+ +K I + Sbjct: 125 KGFGVSVSESLIVRKGFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 L+ + D++++E +++G E++ G L TE+ V ++F+ Y KY+ Sbjct: 185 LK--AMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN-GQ 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEIN 263 + PA++ + + V + + + +GC GI R D++ + + + LE+N Sbjct: 241 VREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINMLEVN 300 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 301 TTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716] Length = 377 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S ++ + VS Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+D + + A + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ +LV D + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193 S+GI + ++ + + ++++ ++L+E + E+ ++G+ + + I Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+ D FY YE K+ + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347 >gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12] gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] Length = 288 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 172/299 (57%), Gaps = 14/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSE+E+S+ SG+A +L+ G+ + ++ +++ + DLA+ LH Sbjct: 3 IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT S + A A+SM+K+ +K++ S G+ + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSQVTACAISMNKLLTKKIASFEGIRMAKTY------AN 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP + GSS+GI V + + L + S + +IE+Y+ G ELT Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEISGYA-----MIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I ++ Y YE KY+ S H PA+I Y+E A H+A+G Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VE+A Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEALA 288 >gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus brevis ATCC 367] gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367] gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis] Length = 380 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + +L GG SSE +VS S A++ + VS + R Sbjct: 9 VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68 Query: 42 -----------------VGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L+ K D+ F ++HGN GEDG +Q + LL+ P+ SG Sbjct: 69 TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD---SQHLISPPYVIKPLKGGS 137 +LASA+S DK +KQV+++ G+ +++ NR D Q + IKP GS Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT---EIA 193 S+GI Q + + +++ ++L+EQ +DG E+ ++G+ + I Sbjct: 189 SVGIHKASNVQEYLDGVADAFRYDY--KVLVEQTIDGPQEVEISILGNEQPQASKLGAIR 246 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+SD FY Y K+ + T +P K+ ++ +E+ ++ + A+G +G++R D+L Sbjct: 247 VPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T +S++P++ G ++ +L+ ++E A Sbjct: 307 K-DGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIELA 350 >gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956] gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 377 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S ++ + VS Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+D + + A + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ +LV D + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193 S+GI + ++ + + ++++ ++L+E + E+ ++G+ + + I Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+ D FY YE K+ + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347 >gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 302 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 113/301 (37%), Positives = 184/301 (61%), Gaps = 5/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L+GG S ER+VSLS+G+A AL G++V ++D + + DLAFN LHG Sbjct: 6 ILLLVGGPSKERKVSLSTGRAVYLALRKLGYEVVKVDP-KIGSKNFSQHNCDLAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q++LE +IPYTHSG+ +SA++MDK++SK+ + ++ + + + Sbjct: 65 QFGEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKAKIKTPKFKVIKKLSDLN 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + +V+KP+ GSS+G+++ K S+ ++ +G +LL E++++G E+ Sbjct: 125 NIISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAA 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +MG +L EI P +FY Y KYS + H++PA + IY +V ++A AH+ + Sbjct: 184 IMGSKALGAIEIK-PSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLS 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++RSDF +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S Sbjct: 243 CKGVTRSDFRVT-RDNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTN 301 Query: 300 R 300 R Sbjct: 302 R 302 >gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] Length = 324 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 98/324 (30%), Positives = 161/324 (49%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL+SG + + F +I + D Sbjct: 4 VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D+ FN +HG GEDGL+QA ELL IP T +AL+ +K V+ Sbjct: 64 SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N + + P +KP K GSS GI +K + Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEFLPAI-- 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ L +TEI V ++DF+ YE KY S Sbjct: 182 ENAYKEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEI-VSENDFFDYEAKYL-GKSK 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ +++ ++ A++ + +G SRS+F+ ++ + F LE+N PG+T S Sbjct: 240 EITPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S EL +E A Sbjct: 298 ILPQQAREAGISLPELFENAIELA 321 >gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] Length = 377 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S ++ + VS Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 37 ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+D + + A + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVKEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ +LV D + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193 S+GI + ++ + + ++++ ++L+E + E+ ++G+ + + I Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245 Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP+ D FY YE K+ + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347 >gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] Length = 335 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 85/332 (25%), Positives = 158/332 (47%), Gaps = 41/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S L+ ++V I++ D Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V S++V + + I P +KP GGSS G+ +K I + Sbjct: 125 KGFGVSVSESLIVRKGFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 L+ + + D++++E +++G E++ G L TE+ V ++F+ Y KY+ Sbjct: 185 LK--AMHESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN-GQ 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEIN 263 + PA++ + + V + + + +GC GI R D++ + + + LE+N Sbjct: 241 VREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINMLEVN 300 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 301 TTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] Length = 376 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 IGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKNGYFLDHEASSRVFDGEPED 68 Query: 37 ----------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ + ++ D+ F ++HGN GEDG +Q +L LL PY + Sbjct: 69 EVAKQELAKLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTA 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137 IL SA+S DK +K++V GVP ++ T + + IKP GS Sbjct: 129 ILGSAMSFDKDITKKIVKLAGVPTTRYEVITPLTAEQYSYDSLSDELGQTLFIKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193 S+GI ++ + + ++ + ++LIE+ ++G EL ++G+ + + I Sbjct: 189 SVGIHKVENAEEYSEGI--RDAFRYDSKVLIEEAIEGPEELEISILGNDHPIASKIGAIR 246 Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK D FY+Y+ K+ + P I ++ +++ + ++A+G +G++R D+L Sbjct: 247 VPKDDAFYTYDNKFVDASQVKFDVPVDISEELAQQITEMGLTTYRALGLKGMARIDYLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K + E+N PG T +S++P++ A +G S+ EL+ +++ A Sbjct: 307 K-DDKPYMSEVNTLPGFTNISLYPQLFAASGISYSELIDRLIQLA 350 >gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIKPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] Length = 287 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 161/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + +IE Y+ G ELT Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKI------VRPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] Length = 373 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 156/365 (42%), Gaps = 71/365 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKPD 52 +AVL GG S+E VS S A L+ ++V + + + V L D Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRADGRD 72 Query: 53 L-----------------------------------------AF-------NVLHGNFGE 64 + F VLHG GE Sbjct: 73 MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121 DG VQ +L+L + Y +G+LASA MDK +K++ G+PV +++ T + + Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPRELTAEEK 192 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP +GGSS+GI + + D ++++ +++++E + G E+ CGV Sbjct: 193 ERLGLPVFVKPARGGSSIGISKVDSWEEF--DAAIDLAFSNDNKVIVEAMIHGAEVECGV 250 Query: 182 MGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 + A + FY ++ KY + +PA +P + KE+++LA Sbjct: 251 LQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETIKEIRQLAIR 310 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+GC GI+R DF EIN PG TP+S++P+M A G SF +L+ ++ Sbjct: 311 TFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTPISMYPKMFAAEGVSFGDLVSALI 368 Query: 294 EDASC 298 A Sbjct: 369 ARALA 373 >gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus] gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus] gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 ER-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] Length = 347 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 153/340 (45%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + + GG S+E VSL S A + L+ + F+ + + +S G + Sbjct: 6 ILIFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQ 65 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L D AF VLHG GEDG +Q +LEL IP Sbjct: 66 GTECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGG 136 G L+SAL MDK R+ ++ + GV V S++ R + + P +KP++ G Sbjct: 126 CGALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS GI + + +P ++++ + +LL+E+ + G E+ C V+G L V + + Sbjct: 186 SSFGITRVTGPEGLPG--AAAAAFANDRELLLEEAIPGFEVGCAVLGTDELTVGAVDEIE 243 Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 F+ +E KY+ S PA+I E+Q +A ++A+ C+ +R D P Sbjct: 244 LSQGFFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTP-E 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + E+N PG T S +P M AG F L+ ++E Sbjct: 303 GEIVFNEVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342 >gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501] gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501] Length = 329 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 161/324 (49%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG SSE E+SL SG+ L+ + +I + R ++L Sbjct: 7 IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+ D FN +HG GE+GL+QA EL+ +P T G +A++ +K ++ Sbjct: 67 SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GVP S ++R +Q I P +K + GSS G+ ++++ + + Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVREASGLQAAVEN 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 + D++LIE + G E++ GV+ L +TEI V ++DF+ Y+ KY S Sbjct: 187 AL--KEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEI-VSENDFFDYQAKYE-GKSR 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP D ++V+ LA + + G SRS+F+ + + LE+N PG+T S Sbjct: 243 EITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEAS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S EL + DA Sbjct: 301 ILPQQAACAGISLTELFGSAIADA 324 >gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 337 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++MGG S E VSL S + A+ L + + +DR + + Sbjct: 16 IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 76 SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +KP K GSSLG + ++ ++ + + Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLGASKVNEEAALKEAIDK 195 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 196 AFA--VDDEILIESFLKGTEISIGVIKYRGVIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 251 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 252 EITPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 309 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 + P+ A AG S +L +E Sbjct: 310 LLPQQAKVAGISLADLFESEIER 332 >gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 358 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 81/342 (23%), Positives = 152/342 (44%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKP---- 51 + VL GG S E VSL S A ++L+ + V I + ++G+V +K Sbjct: 5 VYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISEL 64 Query: 52 -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ F LHG GEDG +Q +LE+L+IPY +G+++ Sbjct: 65 MYQSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMS 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137 SA+ +DK+ +K + + +P + + + I P +KP GS Sbjct: 125 SAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195 S+GI + + + ++ S+ D+L+IE+ + G E+ V+G+ + + + Sbjct: 185 SVGINRCANREELEAAIHEAFSFE--DKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQ 242 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + F Y KY+ V+PAK+ + + ++ +A + + C G+ R D+ R Sbjct: 243 ERQFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDDER 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 + E+N PG T +S+ P + ++ EL+ ++ A Sbjct: 303 -FYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343 >gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 326 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E ++DG E+TCG +TE+ V ++++ YE KY+ S Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYN-GESD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus] gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus] Length = 354 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 148/343 (43%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E EVSL S + F+V + + + + Sbjct: 7 VGLVCGGCSLEHEVSLKSAIYIMKYINKRFFEVVVLWISKQGDWYIVENDDMHIDFFVNK 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L D+ F ++HG GEDG +Q +L L+ +PY S Sbjct: 67 ENLHKCMPILMFSSGNRCFEYINNILSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSD 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGS 137 +L SA+ MDK +K+++ G+ + P ++ + P+ +KP+ GS Sbjct: 127 VLGSAICMDKDITKRLLRDSGLSITPFRTFLAHEKKKLKFLNFADMFGLPFFVKPVNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIA 193 S+G+ + D S L + ++H +++IE + G EL C V+G+ +T EI Sbjct: 187 SIGVAKVNDDYSFHSALDIAFFYSH--KIIIESCIAGRELECAVLGNNENPITSVCGEII 244 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 DFY+Y KY NS V+PA + + +++ +A Q + C G++R D Sbjct: 245 KKNDDFYTYCDKYVDHNSEIVIPAVLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFGK 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T S++ ++ G + LL ++ A Sbjct: 305 DR-IIINEVNTLPGFTSDSMYLKLWQATGINISTLLTRLIMLA 346 >gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] Length = 323 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 34/318 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 +AV+MGG +SE E+SL SG A+ L+ ++V I + ++ Sbjct: 5 IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L H K D FN +HG+ GEDG +QA LELL IP T +AL+ +K V+ Sbjct: 65 SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + S +N ++ I P +K + GSS GI + I L Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAALEI 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE + G E++ GV+ L +TEI + ++DF+ Y+ KY ST Sbjct: 185 --AFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEI-LSENDFFDYQAKYE-GKST 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA + ++ ++ +A + + +G +RS+F+ ++ LE+N PGMT S Sbjct: 241 EITPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHS 298 Query: 273 IFPEMAAYAGYSFRELLL 290 I P+ A AG S EL Sbjct: 299 ILPQQAKEAGISLPELFE 316 >gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0770_33G18] Length = 298 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 145/270 (53%), Gaps = 15/270 (5%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 G + + D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ + S Sbjct: 21 DGTDVESGRFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFS 80 Query: 102 SCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + G+P +++ R + + P IKP+ GSS+GI + Sbjct: 81 AAGLPQTRFVVIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRDELIQ 140 Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSL 209 + S+ + ++LIE V+ E+ C V+G+ L+V+ + VP ++FY Y KY Sbjct: 141 GV--DSAGVYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDD 198 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +T ++PA +P K++Q ++ +AI C G++R DFL ++ EIN PG T Sbjct: 199 CATLIIPADLPGATVKQIQEMSIRTFRAIDCSGLARVDFLI-GQDGEILLNEINTMPGFT 257 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P+S++P++ A AG ++ +L+ +++ A Sbjct: 258 PISMYPKLWAAAGLNYPDLIDRLIQIALAR 287 >gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] Length = 353 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+ +VS+ S +AL+ A ++ + V R+ +L Sbjct: 8 IVVLFGGRSAGHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194 G+ + + + S + + D+LL E+++ E+ CGV+ D +L V+ EI Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FYSY+ KY + T + PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAARAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351 >gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGL------VLAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIQPLFEGNGFWISEAQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+IL+ R P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQRQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342 >gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] Length = 355 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 150/346 (43%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE VS S + ++ + V + + +L Sbjct: 6 ILVIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +K D AF VLHG +GEDG +Q + EL ++PY Sbjct: 66 GTVQAVLSPDATEKSVIVIDGTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIK 131 G+LASA+SMDK +K + GV V + + + + P IK Sbjct: 126 GVLASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS G+ + + + L +++ H ++L+E+ + G E+ C V G+ V Sbjct: 186 PSNAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIA 243 Query: 192 IAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V + ++FY +E KY + S V+ ++P D + V+R A +A+ G++R D Sbjct: 244 SGVGEVLAAAEFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F V + EIN PG T +S++P + AG S EL+ ++ Sbjct: 304 FFVTK-DGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLI 348 >gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] Length = 327 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 162/328 (49%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN +HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + + + P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++L+E ++DG+E++ GV+ L +TEI +P+++F+ YE KY S Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGAS 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA++ V+ +A A+ ++G +G SRS+++ ++ + LE+N PG +P Sbjct: 242 QEITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPA 299 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299 SI P+ A G S ++L VE A Sbjct: 300 SILPQQARIYGISIKDLCGNEVEKALAK 327 >gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3] gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3] Length = 383 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++ + G+PV Sbjct: 123 IDVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGSY 182 Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ Q + P +KP +GGSS+GI ++ + + + + ++L Sbjct: 183 AVLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWADLDTAIKAARA--SDPKVL 240 Query: 168 IEQYVDGIELTCGVMG-------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 +E + G E+ CGV+G +AS+ + FY +E KY S + +PA + Sbjct: 241 VESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMSDATHFDVPANLS 300 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +EV+ A A +A+ C G++R D V E+N PG TP S+FP M Sbjct: 301 HAVREEVRGAAIAAFEALDCAGLARVDMFVTA-DDHVIINEVNTMPGFTPTSMFPRMWEA 359 Query: 281 AGYSFRELLLWMVEDA 296 +G ++ +L+ +V A Sbjct: 360 SGVTYPQLVDRLVRLA 375 >gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205] Length = 364 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 156/344 (45%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDR--------SVGLVLAH 48 + ++ GG++ E VS+ S A+AL +++ +D+ VLA Sbjct: 8 LGLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAK 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 P +L VLHG GEDG +Q + L+++P+ SG Sbjct: 68 GTPAERSELPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +L SA+ MDK K ++ G+P P V+ ++ Q + P IKP Sbjct: 128 VLGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192 GSS+GI + L ++ H ++++EQ + EL C V+G + V Sbjct: 188 LGSSVGISKASNRAELMQGLALAA--QHDPRMVVEQGIQARELECAVLGGQQMRSSVLGE 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y Y+ KYS S V+PA++P + + + +A A +A+G G++R DF ++ Sbjct: 246 ICFDADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFYEQ 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T S++P + A G EL+ +V+ A Sbjct: 306 ASGALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQLA 349 >gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella anatipestifer RA-GD] Length = 327 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + + + P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ D++L+E ++DG+E++ GV+ L +TEI +P+++F+ YE KY S Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGAS 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++PA++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P Sbjct: 242 QEIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPA 299 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299 SI P+ A G S +L VE A Sbjct: 300 SILPQQARIYGISITDLCGNEVEKALAK 327 >gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 394 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 22 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 81 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 82 PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 141 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ Sbjct: 142 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 201 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + ++ P +KP + GSS G+ ++ + +H ++LIEQ +D E Sbjct: 202 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 261 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + P FY ++ KY +++HV PA +P + Sbjct: 262 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 321 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 322 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 380 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 381 YTELITKLID 390 >gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + S G+ V S+L+ R + I P +KP GSS G+ +K + L Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPAL- 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ +++E Y+DG E+T G+ +TE+ V ++F+ Y+ KY+ Sbjct: 187 -RVAFMESSDVMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN-GQV 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268 + PA+I + + V + + + GI R D++ D +V LE+N PGM Sbjct: 244 DEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGM 303 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L ++E+ Sbjct: 304 TTTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + S G+ V S+L+ R + I P +KP GSS G+ +K + L Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPAL- 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211 ++ +++E Y+DG E+T G+ +TE+ V ++F+ Y+ KY+ Sbjct: 187 -RVAFMESSDVMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN-GQV 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268 + PA+I + + V + + + GI R D++ D +V LE+N PGM Sbjct: 244 DEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGM 303 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 T S P+ AG +++L ++E+ Sbjct: 304 TTTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] Length = 353 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 151/346 (43%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + V+ GG S E VS+ S + A F V +DR L Sbjct: 8 VGVVFGGASGEHAVSIRSARTVIEAFSAPENQERFAVIPHYIDREGRWWGPAVAERALEQ 67 Query: 49 LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K DL + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 NKALDAHELPQPLPAPGLRHWPVDPDSVDLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+ P + + ++ + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYMGLTAADLEDPERLEQLLTRVEQELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + L Q+++ +LL+EQ V+ EL C V+G L + + Sbjct: 188 ANLGSSVGITKANNRDELLAGLHQAAAL--DPRLLVEQGVNARELECAVLGRRHLRASVV 245 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y YE KY+ S ++PA +P + +++Q +A A A+ G +R D + Sbjct: 246 GEIRFDADWYDYETKYTEGRSHTLIPAPLPALVSQQIQAMAIRACHAVHAFGQARVDVFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S +++ EIN PG T S++P + A +G +L+ +V+ A Sbjct: 306 DETSGEIWLNEINTLPGFTSQSMYPTLWAASGIPLPQLVAELVDTA 351 >gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] Length = 331 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 149/325 (45%), Gaps = 33/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + + +DV D Sbjct: 8 IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q LEL+ +PY+ +L SAL+ DK + + Sbjct: 68 SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127 Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ V SIL+ + + + P IKP GSS G+ +K I L + Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++++E ++DGIE+T G+ V V ++F+ Y KY+ Sbjct: 188 --AFMESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEVVTSNEFFDYNAKYN-GEVDE 244 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTP 270 + PA+I ++ +V + + + GI R D++ D V LE+N PGMT Sbjct: 245 ITPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMTA 304 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 305 TSFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 326 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 + + ++L+E ++DG E+TCG +TE+ V ++++ YE KY+ S Sbjct: 185 AFA--EAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSYNEYFDYEAKYN-GASD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 56/337 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S ++ F++ + + G + Sbjct: 10 VGLICGGCSTEHEVSLQSAAYIMQHIDKNLFEIVVFWISKHGGWYIIYNDVSRNIFSDSR 69 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 A LK D+ F ++HG+FGEDG +Q ++ ++ +PY Sbjct: 70 EQKNKYIPVMIKQFSGRFVFFTDDITSALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPY 129 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPL 133 S IL S++ MDK +K+++ G+PV + + + +S P+ IKP+ Sbjct: 130 VGSSILGSSICMDKTITKRLLRDSGLPVASFKTFSHYERSNITFVSFYNMFGLPFFIKPV 189 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + L + + +GD++++E + G EL C V+G+ + Sbjct: 190 NQGSSIGVSKVTNQNVFNKALDVAFA--YGDKIMVEPCIVGRELECAVLGNDDPISSVCG 247 Query: 194 V------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + FY+Y KY S + ++PA I I +V+ + A Q + C G++R D Sbjct: 248 EIVINSNNDNGFYTYYKKYISSTTEVIIPALITNIISDKVRHYSICAFQTLSCSGMARID 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 L+ ++ E+N PG T S++P++ G S Sbjct: 308 MFLT-LNNQIIINEVNTLPGFTSHSMYPKLWEATGIS 343 >gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] Length = 331 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 160/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSV-- 42 +AVLMGG SSE E+SL+SG ++L+ ++V + + D+ Sbjct: 6 IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65 Query: 43 --GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D +N +HG GEDG +QA LELL IP T G SAL+ +K S V+ Sbjct: 66 FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ VN+ + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 L ++ +Q+LIE ++ G E++ GV G L V EI VP DF+S E KYS Sbjct: 186 LDN--AFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEI-VPDGDFFSLEAKYS-G 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S ++PA++ +VQ L ++ +G +GI R DF+F K ++E+N PG++ Sbjct: 242 KSQEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFHE--GKPHFVEVNTNPGLS 299 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 SI P AG S E+ +E Sbjct: 300 KESIIPREFKAAGLSLTEVFGKAIET 325 >gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] Length = 328 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 155/309 (50%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55 +AVL GG+SSEREVSL SG+ AL ++ IDV S LV L + + Sbjct: 20 IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-- 113 N+LHG GEDG VQ +LE L I YT IL SA+ M+K+ +K++ S V +L+ Sbjct: 80 NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139 Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + S + P ++KP+ GSS+G+ +IK SS + + Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFES---VVSSIKDSENYFL 196 Query: 169 EQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 E Y+ G E+T G++ + K++ Y YE KY+ + +PAK+ +I Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +V A++ +GC G+SR D + +V+ +E+N Q GMT S P MA + Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIV-GNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315 Query: 285 FRELLLWMV 293 F +L+L+++ Sbjct: 316 FNDLVLYIL 324 >gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] Length = 333 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 35/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A++ GG SSE +VS+ S + S + + V + +D++ Sbjct: 8 IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GE+G++Q ELL IPY+ SG+L A++ +K + Sbjct: 68 SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++ GV V S+LV R D Q ++ P +KP+ GSS G+ +K + L Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNS 211 ++ D +IE ++DG EL+ G V V ++F+ Y+ KY+ Sbjct: 188 --RRAFMESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEVVSSNEFFDYDAKYN-GQV 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGM 268 + PA+I KEV + + C GI R D++ V LE+N PGM Sbjct: 245 QEITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPGM 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP S P+ AG + ++L +VE+ Sbjct: 305 TPTSFIPQQVRAAGLNITDVLTEIVEN 331 >gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 315 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 22/313 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VS+ SG+ A AL AG +V D+D ++ L +PD F LHG Sbjct: 7 VVVLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ IL LL +PY S A + DK +K + + G+ + + + T Sbjct: 67 ATGEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRD 126 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP +GGSSLG + + +P ++ + + + + LIE+ Sbjct: 127 LGTHAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAMV--ACFAYDETALIER 184 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G E+ V+ G +L EI V S Y Y +Y++ + PA++ + K Sbjct: 185 HITGREIAVSVVDTGTGPQALPAVEI-VADSGVYDYAARYTAGITEFFAPARLTAEEAKS 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA----G 282 V++LA AH + +SR+D + D ++LE+NV PG+T S+ P A A G Sbjct: 244 VEQLAVRAHTTLDLSCVSRTDLILDA-DGIPWFLEVNVAPGLTETSLLPLAAGAADLDLG 302 Query: 283 YSFRELLLWMVED 295 +R+L+ ++ + Sbjct: 303 VLYRDLVQAVIAE 315 >gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 324 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 33/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE +SL S + +++ + + + R+ V Sbjct: 4 VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63 Query: 46 -----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D A+ ++HG GEDGL+Q L++L IPY+ G+L+++++ +K + Sbjct: 64 SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 GV SIL+ + + P ++KP GGSS G+ + I L + Sbjct: 124 RGFGVETAKSILLKQREQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQLAIR 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++N G+ +LIE ++ G E+TCG +L +TEI + K+DF+ +E KY+ Sbjct: 184 N--AFNEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEI-ISKNDFFDFEAKYNPGMV 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + E+Q L + +G +GI R D++ P +++ LE+N PGMT Sbjct: 241 EEITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISPK-KEIKMLEVNTIPGMTAT 299 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +E+L ++E Sbjct: 300 SFIPQQIRAAGLNLKEILTEIIES 323 >gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + + +S I + Sbjct: 4 IAIIFGGNSPEYAVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q + GV P+IL+ R P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQTHDFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ + + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 242 AISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342 >gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 350 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSV---------------- 42 +A++ GG S E VSL+S + AL+ + +S I + Sbjct: 4 IAIIFGGNSPEYAVSLASATSAIEALQSSPDDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 43 -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 G L+ + PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+IL+ + P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQDQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L + ++ + +L+++ + G+E+ CG++G+ SL V Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241 Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++ EIN PG T S +P M A G S++ELL ++ Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342 >gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 150/311 (48%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A AL A DVD ++ L PD LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++++L+L+ IPY A+ + DK +K ++ G+P I + R T Sbjct: 69 GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS LG+ V++ + +P ++ + +GD L+E + Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAMI--GCFAYGDVALVEAFA 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ++ GV+ G EI P D Y + +Y+ ST +PA++ + ++V Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIE-PSGDAYDFAARYNPGASTWHVPARLAPRVSEDVA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A A + +G R +SR D + P + LE V PGMT S+ P AG+ EL Sbjct: 246 AVATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGEL 304 Query: 289 LLWMVEDASCL 299 + +V+ A Sbjct: 305 MAGLVDRAIAR 315 >gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] Length = 332 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ S + S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GE+G++Q EL+ +PY+ SG+L AL+ DK + Sbjct: 68 SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SILV R + + P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++IE+Y+ G+E++ G G TE+ V K++F+ Y KY+ Sbjct: 186 RVAFMESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEV-VTKNEFFDYNAKYN-GEV 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268 + PA++ + ++V L + + GI R D++ D V LEIN PGM Sbjct: 244 QEITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPGM 303 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP S P+ AG +++L +VE+ Sbjct: 304 TPTSFIPQQVRAAGLEMKDVLTDIVEN 330 >gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 351 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 157/345 (45%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV GG S+E +S+ +G L G V I + + G V Sbjct: 4 IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +++L D+ F LHG GEDG +Q L +L +PYT SG+ Sbjct: 64 SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLKGGS 137 ASAL+MDK R+ Q+ G V P V + T+ + P +KP++GGS Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189 S+ I + + L + +++ + ++ G E++CGV+ +L Sbjct: 184 SVSTYKITNQEQLSRQLAL--IFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI VP +F+ +E KY S + PA+I VQ LA AH ++GCRG SRSDF+ Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFI 300 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + LE N PGMT S+ P+ A AG + E+ ++E Sbjct: 301 I--VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343 >gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010] gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010] Length = 381 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 157/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + ++ P +KP + GSS G+ ++ + +H ++LIEQ +D E Sbjct: 189 QVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLD------VTEIAVPK-----SDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + EI + K FY ++ KY +++HV PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGGDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAIKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366] gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366] Length = 328 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41 +A+L GG + E VS+ S A L+ F V +I +VDR+ Sbjct: 5 IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L +K + F +HG+ GEDG +Q ++L IPYT L SA++M+K +K +V Sbjct: 65 SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124 Query: 101 SS-CGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + S + + T + + PY +KP GGSS+G+ + + + Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNHPDDLQAAI- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ Q+LIE+++ G E T GV+ L TE+ K +F+ +E KY+ + Sbjct: 184 -DRAFKEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAK-EFFDFEAKYTPGVA 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T PA I + + V ++ + + CRG+ R DF+ + +++EIN PG T Sbjct: 242 TETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQTAT 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ A AG + ++ + Sbjct: 302 SFIPQQVAAAGMKLNDFYTKLIRE 325 >gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171] Length = 381 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + ++ P +KP + GSS G+ ++ + +H ++LIEQ +D E Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + P FY ++ KY +++HV PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] Length = 302 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + +L GG SSEREVSL S + SA+ + G V+ +D ++ K D+AF +LH Sbjct: 3 ILLLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDKIVEVAEKQDVAFILLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118 G+ GEDG++QA+LE + PY + S L++ K +K + G+ S+ + + + Sbjct: 63 GSPGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPEV 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P +K GGSS+ + ++ + + + + +N G+++L+E+ + G E+T Sbjct: 123 TWEPGLNYPIFVKSNIGGSSVNVHLVTNYEELF--IAMEALFNAGEEVLLEEAIIGQEVT 180 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ D +L I + F+ Y KY+ + + PA + + K +Q A AH + Sbjct: 181 CGVIDDQALPPILIR-SQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNTL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G SR+DF+ +F LE+N PGM+ S+ P AA G +F EL+ +++ A Sbjct: 240 NLQGCSRADFILR-DDELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296 >gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] Length = 381 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176 + ++ P +KP + GSS G+ ++ + +H ++LIEQ +D E Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224 + C V+ + + + P FY ++ KY +++HV PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4] gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4] Length = 325 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK---------VSQIDVDRSVGLVLAHLKP 51 +A++ GG SSE VSL S S ++ + V Q+++ + + Sbjct: 5 IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q EL+ +PY+ G+LA+A++ +K Q + Sbjct: 65 SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+++ + I P +KP GGSS G+ +K + + + Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ GD+++IE ++ G E+TCG+ L +TE+ VPK++F+ ++ KY Sbjct: 183 EKAFTEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEV-VPKNEFFDFDAKYK-GEVE 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + + VQ+L + +GC+GI R D++ + LE+N PGMT S Sbjct: 241 EITPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG ++++ ++E+ Sbjct: 300 FIPQQVAAAGLDIKDVMTEIIEN 322 >gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b] gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b] Length = 308 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V I +D + V + L D + L Sbjct: 6 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + V Sbjct: 66 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 125 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + V+KP GGSS+G+ ++ + + L + + LIE+ + G Sbjct: 126 VDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELV--FGMDKEALIEEVLHG 183 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +E++ V+ I D++ YE KY+ + + + P ++ E+ + A + Sbjct: 184 VEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFAKDS 242 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L ++E Sbjct: 243 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIE 301 Query: 295 DA 296 + Sbjct: 302 SS 303 >gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] Length = 304 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 182/307 (59%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GGIS ER +SL +G A L+ G+++ + D+S+ + KP + FN LHG Sbjct: 5 ILILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE +IPYTHSG++AS+++MDK SK++ + I + ++ Sbjct: 65 QFGEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINL 124 Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P V+KP+ GSS+ + + K ++I L + S+ Q++IE+++ G Sbjct: 125 ELVNKINKELKFPVVVKPINEGSSVNVFICTK-KNINQILKKMKSYK---QVMIEEFIGG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFL 233 E+ +MG+ L E+ PK FY Y+ KY++ + H++P + + EV +A Sbjct: 181 REIQVAIMGNKKLGAIELK-PKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIALK 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+ IGCRG++RSDF F K + LEIN QPGMT +S+ PE+AAY G SF +L+ W++ Sbjct: 240 AHKKIGCRGVTRSDFKFYK--NKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINWIL 297 Query: 294 EDASCLR 300 +DAS R Sbjct: 298 KDASTKR 304 >gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] Length = 331 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SIL+ R + I P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE ++DG E++ G+ A L TE+ V ++F+ Y+ KY+ Sbjct: 186 RVAFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTTNEFFDYDAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269 + PA++ + +EV + + + GI R D++ KV LEIN PGMT Sbjct: 244 EITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 287 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ + + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++KQ+ S G+ + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAY------RT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + +IE Y+ G ELT Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKI------VRPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] Length = 329 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AV+ GG S E +SL S + + ++ ++ + D S Sbjct: 4 VAVVAGGYSDESVISLKSCELIYQNINTEKYEPIRVRILKDAWYAEIDGEKYPINKADFS 63 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K DL +N +HG GEDG +QA +L+ +PY SAL+ +K V+S Sbjct: 64 FERNGKKEKFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLS 123 Query: 102 SCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P S+ + + + P +KP K GSSLGI + +++ IP L Sbjct: 124 KYGIPHAKSVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKAL--E 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++LIE ++DG+E++ GV+ L +TEI V ++F+ YE KY S Sbjct: 182 LAFAEDKEVLIEAFLDGLEVSVGVLKYKGKTTVLGITEI-VSDNEFFDYEAKYD-GKSQE 239 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + + V+ +A + ++ G SR++++ + + + LEIN PGM+P SI Sbjct: 240 ITPARISQETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASI 297 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 FP+ AAYAG S +EL+ ++ A Sbjct: 298 FPQQAAYAGISLQELVQNELDFA 320 >gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] Length = 320 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 152/319 (47%), Gaps = 47/319 (14%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------------------DLAFNV 57 L+ ++++ + + + + + D+AF V Sbjct: 1 MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVFNLLRSQDVAFPV 60 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116 LHG +GEDG +Q + EL ++PY + AS+ MDK+ +K+V S G+P S+ V + Sbjct: 61 LHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVKKRN 120 Query: 117 -----------------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P IK + GSS+G K++ + L +++ Sbjct: 121 DGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEEAA- 179 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217 + +++E+ VD IEL V+G+ + V+ + +P +FY++E KY S +PA Sbjct: 180 -KYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIPA 238 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 K+ +I +++++ A A +AI G+SR DF D + V+ EIN PG T +S++P++ Sbjct: 239 KVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQL 298 Query: 278 AAYAGYSFRELLLWMVEDA 296 GYS+ ELL ++E A Sbjct: 299 MEDYGYSYSELLDKLIEIA 317 >gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237] gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237] Length = 326 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 101/328 (30%), Positives = 161/328 (49%), Gaps = 34/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG + F + I + D Sbjct: 5 IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG+ GEDGL+Q+ ELL IP T SAL+ +K V+ Sbjct: 65 SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N + + P +K K GSS GI+ + K + + + Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ L VTEI V ++DF+ YE KY+ S Sbjct: 183 ENAYKEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEI-VSENDFFDYEAKYA-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I ++V LA A+ + +G SRS+F+F + + F LE+N PG+T S Sbjct: 241 EITPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 I P+ A AG S EL + +A ++ Sbjct: 299 ILPQQAKVAGISLPELFENAINEALTVK 326 >gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum] Length = 355 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+++GG S E VSL S + + +++ I + + Sbjct: 6 LAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTWL 65 Query: 45 --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ D F +LHG GEDG +Q + EL IP Sbjct: 66 CEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130 Y G + A+ MDK + V+ G+ P + V ++ + P I Sbjct: 126 YVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFI 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187 KP GSS GI ++ + + + ++++E ++G E+ VMG+ L Sbjct: 186 KPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAG 245 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V EI + F+ YE KY ++S PA+I +++E + +A A++A+ C+G++R D Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVD 304 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + E+N PG T S +P M AG F EL+ +V A Sbjct: 305 MFVTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 59/352 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 V+ GG S+E EVS S + A ++ +++ + + + LA Sbjct: 9 VIFGGRSTEHEVSCRSVQNIARDVDRERYELVLLGITKEGEWRLAEDLSSIEDGSWREGK 68 Query: 49 ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F LHG +GEDG +Q + EL IPY SG+ Sbjct: 69 RAMLLPDASLRSLLIFEKDGSSRLQRIDVIFPALHGKYGEDGSIQGLFELSGIPYVGSGV 128 Query: 85 LASALSMDKMRSKQV----VSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKP 132 LASA+SMDK+ +K + + G+ + V+ + I P +KP Sbjct: 129 LASAVSMDKLFTKVIAAQPLKKLGLRQARCLPVDAAELGRMEEILNRVEKSFQYPVFVKP 188 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS G+ ++K + +P L ++ + +LL+E+ V G EL C ++ + + Sbjct: 189 ANAGSSCGVSRVEKREELPDALRAAAKVDR--KLLVEETVYGRELECALLRGPDMKIHAS 246 Query: 193 AVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + + FY Y+ KY++ +S + ++ + + ++ A A+ G++R DF Sbjct: 247 GLGEIRAAASFYDYDAKYNNPDSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDF 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + EIN PG T +S++P + G REL+ +++ A C R Sbjct: 307 FLTEDG--PVFNEINTLPGFTAISMYPMLWEAKGIGKRELIQRLIDSA-CQR 355 >gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] Length = 344 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S+ER+VS+ SG AL G + +DV D V Sbjct: 3 IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62 Query: 46 LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++K D+ F LHG GE+G VQA +L++I Sbjct: 63 AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135 YT +G SA++MDK +K + VP + + NR S H + P V+K G Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ ++ L + ++++ ++++IE+Y+ G E T V+ + + I P Sbjct: 183 GSSIGVYIVQDQEAYVKALDE--AFSYEEEVVIEEYIQGKEYTVAVVDGEAYPIVLIE-P 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S FY Y+ KY + + PA + + +++Q A ++A+ + R DF+ D Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDEAGN 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G + L ++E Sbjct: 300 -MYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337 >gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301] gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942] gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 347 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 71/353 (20%) Query: 1 MAVLMGGISSEREV---------------SLSSGKACASALEDAGFKVSQIDVDRSVGL- 44 + +L GG S E EV S ++V +D+ G Sbjct: 6 VGLLFGGRSGEHEVSIRSAAAIASALADPS-----------NRDRYQVLPFYIDKEGGWH 54 Query: 45 -------VLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 VLA+ KP ++ F +LHG GEDG +Q +L L++ P Sbjct: 55 SGETAAQVLANQKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRP 114 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------------MDSQHLISP 126 + SG+L SAL MDK+ KQ + +P + VNR + + Sbjct: 115 FVGSGVLGSALGMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGY 174 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185 P +KP GSS+GI ++ + L Q+++ + +L+IE +D E+ C V+G+ Sbjct: 175 PCFVKPANLGSSVGIAKVRDRAELEAALDQAAALDR--RLIIEAAIDNPREVECAVLGND 232 Query: 186 SLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + SDFY YE KY+ + ++PA++ ++ +++Q LA A QA+ G+ Sbjct: 233 YPQASILGEITYDSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGL 292 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF D ++F EIN PG T +S++P++ A +G +F +L+ +++ A Sbjct: 293 SRLDFFLDSQ-GQIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQLA 344 >gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 55/332 (16%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGL-------------------------------- 44 S + AL+ F+ I +D+ Sbjct: 2 QSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 61 Query: 45 ----VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 L ++P D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK Sbjct: 62 AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDK 121 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKD 147 +K+V+ + V P + +R T + + P +KP GSS+G+ ++ Sbjct: 122 DMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTA 181 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELK 205 + L + +++H ++L+E V G E+ C V+G+A + V FYSY K Sbjct: 182 DAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATK 239 Query: 206 Y-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 Y S + V+PA I + +Q++A A+QA+GC G++R D ++ E+N Sbjct: 240 YISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFL-CADGRIVINEVNT 298 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P++ +G +R L+ ++E A Sbjct: 299 LPGFTRISMYPKLWQASGLDYRGLITRLIELA 330 >gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 332 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE EVSL S + S + + V +++ + V Sbjct: 7 IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+GL+Q +++++PY+ SG+L A++ +K + Sbjct: 67 SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126 Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G V S++V + + + P IKP GSS G+ +K IP L Sbjct: 127 RGFGYNVAKSMVVYKDEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIPAAL 186 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 ++N ++++IE ++ G E++ G L TE+ V +++F+ Y KY+ Sbjct: 187 --ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEV-VTENEFFDYNAKYN-GQ 242 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPG 267 + PA++ D + V + + C GI R D++ S + LEIN PG Sbjct: 243 VQEITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINTTPG 302 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MT S P+ AG + ++L +VE Sbjct: 303 MTATSFIPQQVRAAGLNMTDVLTNIVER 330 >gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 100/328 (30%), Positives = 155/328 (47%), Gaps = 41/328 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 ++VL GG S ER+VS++S AL G +V +D A + Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV L++ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDW-LIDPEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + +P L ++ +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAADLPAALELAA---RHGTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + PA +P ++ +E + A AH+ + G SRSDF D ++ +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLDDA-GILWIIEANS 297 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG+T S+ P+ AA G + EL + Sbjct: 298 LPGLTATSLLPQSAAAVGIGYAELCERI 325 >gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] Length = 326 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VLMGG SSE ++SL SG A L+ F V I + D Sbjct: 4 IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H+ D +N +HG GEDG +QA LELL IP T SA++ +K V+ Sbjct: 64 SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ I +N+ D + PY +K + GSS G+ + K + + L Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKAL-- 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D++++E ++DG E++ G+ +G+ +L TEI V +DF+ YE KY S Sbjct: 182 ELAFSVDDEVILESFLDGTEVSVGIYQLGEEIIALPPTEI-VSDNDFFDYEAKY-QGKSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I +++ VQ + + + C+GI+R+DF+F ++EIN PGM+ S Sbjct: 240 EITPARISVELTLAVQEQSKRIYSVLKCKGIARADFIFH--DGTPHFIEINTNPGMSTES 297 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 I P+ + +++ ++E+ Sbjct: 298 IIPQQIRATDKTLQQVFTEVIEN 320 >gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705] gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705] Length = 428 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 146 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 205 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 206 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 265 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 266 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 325 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 326 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 384 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 385 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 424 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 39 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 89 >gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 333 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG S E +VS+ S + S + + + +D +DR+ Sbjct: 8 IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G++Q +L+ +PY+ SG+L +++ DK Sbjct: 68 SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127 Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + GV V SIL+ R + + P +KP GSS G+ +K + L Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAPAL- 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNST 212 +++ D+++IE +++G E++ G V V K++F+ Y+ KY+ Sbjct: 187 -RTAFMESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEVVTKNEFFDYDAKYN-GQVK 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGMT 269 + PA++ + K V + + C GI R D++ D + K+ LEIN PGMT Sbjct: 245 EITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 305 ETSFIPQQVRAAGLDIKDVLSDIVEN 330 >gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH] gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH] Length = 365 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+SL S SAL + + +D+ Sbjct: 8 LIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIKRD 67 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + + L+ D+ F ++HG GEDG +Q L++++IP +GIL SA+ Sbjct: 68 SSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGSAI 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +P+ P I ++ D + ++ P ++KP GSS+G Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSSIG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197 I + D I ++ + +++E+++ E+ C V+G+ + + EI V Sbjct: 188 ISIAYNDTQIEK--CIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQDF 245 Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS+ + +PA++ + +++ AFL ++ + RG++R DFL + + Sbjct: 246 VFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEKDT 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G + L+ +V A Sbjct: 306 NLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 >gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 315 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 161/311 (51%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V Q DVD S+ L + PD F VLHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG ++ +L+L +PY + A + DK + +V S G+ S+++ T Sbjct: 69 GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128 Query: 123 L----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP +GGS+LG +++ +P ++ + +G LIE+YV Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAMVN--CYAYGPVALIERYV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ V+ G +L EI P S FY YE +Y++ + V+PA++ + Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQ-PDSGFYDYEARYTAGATQFVVPARLDAAVAAACA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + A AH+A+G R +SRSD + D ++LE+NV PGMT S+ P A AG L Sbjct: 246 QAAVTAHRALGLRDLSRSDLVVDAQ-GVPWFLEVNVAPGMTETSLVPLAAEAAGIELGVL 304 Query: 289 LLWMVEDASCL 299 ++ A+ Sbjct: 305 CRDLLATAAAR 315 >gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 352 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 48 -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + L S +KP GSS+G+ Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197 + ++ + + ++L+E V G E+ CGV+ G + V EI + Sbjct: 186 SRVSN--ALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 198 D-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + T +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300 ++ EIN PG T S++P+M +GY +L+ +VE AS R Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351 >gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 326 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+L+ D I P IKP GGSS G+ + + I + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ ++++E ++DG E+TCG +TE+ V ++++ YE KY+ S Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDRSVVFPITEV-VSHNEYFDYEAKYN-GASD 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+ D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 241 EITPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322 >gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] Length = 332 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 151/327 (46%), Gaps = 36/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G V SILV R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++IE+++DG+E++ G TE+ V K++F+ Y KY+ Sbjct: 186 RVAFMESSDVMIEKFLDGMEISQGAYKTKDKGVVVFPATEV-VTKNEFFDYNAKYN-GEV 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268 + PA++ + K+V +L ++ + GI R D++ + + LEIN PGM Sbjct: 244 EEITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINTTPGM 303 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP S P+ AG +E+L +VE+ Sbjct: 304 TPTSFIPQQVRAAGLDIKEVLTEIVEN 330 >gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] Length = 395 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] Length = 352 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 48 -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + L S +KP GSS+G+ Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197 + ++ + + ++L+E V G E+ CGV+ G + V EI + Sbjct: 186 SRVSN--ALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 198 D-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + T +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300 ++ EIN PG T S++P+M +GY +L+ +VE AS R Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351 >gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] Length = 316 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 22/315 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G VQ +LE+L++P+ + + DK +K V G I++ T Sbjct: 66 GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125 Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+ + P ++KP +GGS+LG V+++ +P ++ + +GD +L E+ Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +VDG+E+ V+ G +L EI VP+S Y Y +Y++ + PA+I + K Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARISDEAAKA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS-- 284 V LA AH+ +G R ISR+D + P V +LE+N+ PG+T S P AG + Sbjct: 243 VSELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTLG 301 Query: 285 --FRELLLWMVEDAS 297 F +L+ V A+ Sbjct: 302 SVFADLVARAVARAN 316 >gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens] gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens] Length = 328 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 33/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + + +DV D Sbjct: 5 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL+ IPY+ +LASAL+ DK + + Sbjct: 65 SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124 Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ V SIL+ + I P +KP GSS G+ +K + L + Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAPALRK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++++E ++DG+E+T G+ V V ++F+ Y KY+ Sbjct: 185 --AFMESSEVMVESFLDGVEITQGIYKTREKSVPFPITEVVTSNEFFDYNAKYN-GEVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTP 270 + PA+I ++ ++V + + + GI R D++ + + LE+N PGMT Sbjct: 242 ITPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGMTV 301 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 302 TSFVPQQVRAAGLDIKNVLSDIVEN 326 >gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68] gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68] Length = 395 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKADDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ AG S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDAAGVSYTELITRLIE 391 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87] Length = 347 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 42/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + V+ GG SSE VSL S + + + + ++ I +D++ + D Sbjct: 4 LGVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWI 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 F VLHG GEDG VQ +LEL+ I Y +++ Sbjct: 64 PQATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMS 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGI 141 SA+SMDK + +P + + + Q IS P+++KP GSS G+ Sbjct: 124 SAISMDKEIMHILCDEANIPCADYVCLKANEENPSFEMIQEKISLPWIVKPCNAGSSYGV 183 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDF 199 ++ + + ++ ++L+E+ ++G E+ C VMG+ + + Sbjct: 184 HKVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQISGGI 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + +E KY + + PA+I + + + + LA ++A+ C G++R D P ++V Sbjct: 244 FDFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTPQ-KEVIL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG F +L+ +++ A Sbjct: 303 NELNTIPGFTATSRYPSMMKEAGIEFGDLIDKLIDLA 339 >gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] Length = 336 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 163/300 (54%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G + + +D++R L + PDL +N LHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 GEDG +L++L + YTHS + AS++ MDK+ +K V+ S G+ ++ + + Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP+ GGS++G+ I + + + ++L+E+Y+ G E+ Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALE--GRMLVEEYIPGQEVHT 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E + Y Y+ KY HV PA + D+Y A +Q +G Sbjct: 193 AVFLGRAIGTMEFLF-EGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298 CR +SR DF +D ++ + LEIN PGMT S PE + G F +++ ++V+DA C Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311 >gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 397 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 115 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 175 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 234 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 235 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 393 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 8 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 58 >gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 316 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 158/310 (50%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ + AL D G V + D D S+ L KPD A LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G +Q +LE+L +P+ + + DK +K +VS G + + T Sbjct: 66 GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125 Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+ + P ++KP +GGS+LG V++ +P ++ + +GD +L E+ Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAMV--GCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++DG+E+ V+ G +L EI VP+ Y Y +Y++ + PA++ ++ + Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEI-VPEGGVYDYTARYTAGLTDFFAPARLSEEVAEA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V LA AH +G R ISR+D V +LE+N PG+T S P AG S Sbjct: 243 VSDLAVSAHTLLGLRDISRTDA-VVASDGTVHFLEVNSSPGLTETSTVPMALEAAGTSLG 301 Query: 287 ELLLWMVEDA 296 + +V+ A Sbjct: 302 AVFTDLVQRA 311 >gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 337 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 92/304 (30%), Positives = 147/304 (48%), Gaps = 33/304 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +VS+ S + S ++ + + +++ + L Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q + Sbjct: 65 SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+LVN+ D I P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D ++IE ++DGIEL G +TE+ V K++F+ Y KY+ T Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYN-GEVT 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 241 EITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299 Query: 273 IFPE 276 P+ Sbjct: 300 FIPQ 303 >gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271] gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271] Length = 325 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLP--MYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321 >gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] Length = 361 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVL--------------- 46 ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + + +LIE++++ E+ C V+G+ EI V Sbjct: 187 INVAYSESQIE--FFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA++ + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ EIN PG T +S+F +M ++ G F++LL ++ A Sbjct: 305 GKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLLDNLINYA 346 >gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154] gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 372 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDHVGRWYLIDQPEMFLAHSPDH 66 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + KV EIN PG T +S++P+M +G LL ++E A Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351 >gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] Length = 317 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 34/320 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE ++SL SG L+ + +I + D S+ + Sbjct: 1 MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q EL+ IP T + +AL+ +K + G Sbjct: 61 NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N ++ + P +K K GSS GI + K + + + ++S+ Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAI--NNSF 178 Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++IEQ++DG+E++ GV+ L +TEI V ++DF+ Y KY S + P Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEI-VSENDFFDYAAKYE-GKSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I D ++ +A ++ +G G SRS+F+F + + + LE+N PG+T SI P+ Sbjct: 237 ARISKDYEQKTVTVAKQVYEILGMTGFSRSEFIF--KNDEPYLLEMNTVPGLTKESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVEDA 296 AA AG + +L +E+A Sbjct: 295 QAAEAGINMSDLFDNAIEEA 314 >gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703] Length = 301 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 12/254 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F ++HG GEDG +Q +L + IP+ SG+L SA+SMDK +K+++ G+ + P I Sbjct: 35 DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFI 94 Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + R D+ + P IKP GSS+G+ ++ + + ++H + Sbjct: 95 TLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYEQAVALAFDFDH--K 152 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLD 222 +L+E + G E+ C VMG+ + + V +FYSY+ KY + + ++PA I Sbjct: 153 VLVESAIVGREIECAVMGNDNPQASLCGEVVISDEFYSYDTKYINETGAKVIIPASIGSA 212 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + ++ +A A +A+ CRG++R D P +V EIN PG T +S++P++ G Sbjct: 213 VSDNIRAVALAAFRALECRGMARVDVFLTP-DNRVIINEINTLPGFTNISMYPKLWRATG 271 Query: 283 YSFRELLLWMVEDA 296 EL+ ++E A Sbjct: 272 VGSTELITTLIELA 285 >gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 327 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AVLMGG S E EVSL S L+ + + I + D Sbjct: 4 IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ L + D AFN +HG GEDG +QA L+ IP T + ASAL+ +K V+ Sbjct: 64 SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+P + +N+ + + P +K + GSS G+ ++ I D Sbjct: 124 NPYGIPRAKAYYLNQGEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDI--DDAI 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE+++ G E++ GV+ L +TEI V ++DF+ Y+ KY S Sbjct: 182 EKAFEVDNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEI-VSENDFFDYQAKY-QGRSK 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++V+ LA + + +G SRS+++ + + + LE+N PG++ S Sbjct: 240 EITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGLSNAS 297 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 I P+ A AG + L +E+ Sbjct: 298 ILPQQAKAAGITLANLFDNAIEE 320 >gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] Length = 312 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 9/299 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S+ERE+SL SGKA +AL + G V+ D + + D+ F LHG Sbjct: 5 LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRHDVVFLALHGTG 64 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG +Q++LE +P+T S AS ++ K SK G+ + Sbjct: 65 GEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAIEKI 124 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P+ +KP GSSLG+ I + +P + + LIE+ + G E Sbjct: 125 QNRAARLVSPWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKLDKAG--LIEEAISGTEW 182 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G+ + I +F +Y KY + H + + K++ +A A+QA Sbjct: 183 TVGLFDSVTFPPVAIQ-AHREFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVAREAYQA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G++R D + D + LE+N PGMT S P+ AA G+S EL M A Sbjct: 242 VGATGLARVDLICDVQGN-PWILEVNTIPGMTETSTVPKAAAAFGWSLGELCERMCAAA 299 >gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] Length = 330 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S S ++ + + ID D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVAKHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ G ++++E+++DG E+TCG G + V ++F+ ++ KY+ Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 242 ITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] Length = 317 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 34/320 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE ++SL SG + L + +I + D SV + Sbjct: 1 MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q+ +L+ +P T +AL+ +K V+ G Sbjct: 61 NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N + ++ + P +K K GSS GI + + + + + ++ Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEKLNAAIDI--AF 178 Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 ++++IE ++DG E++ GV+ L +TEI V ++DF+ YE KY S + P Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEI-VSENDFFDYEAKYL-GKSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I + +V +A + + +G +RS+F+F + LE+N PG+T SI P+ Sbjct: 237 ARITKEQENKVTTVAKKIYNVLKMKGYTRSEFIF--KDGEPHLLEMNTIPGLTNESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVEDA 296 AA AG + L +E+A Sbjct: 295 QAAEAGITMEALFDSAIEEA 314 >gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 395 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 318 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 157/311 (50%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ + L AG V D D S+ + PD F LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++++LELL +PY +G A ++ DK +K VV S G+ S+ + + T Sbjct: 69 GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG +++ + +P ++ + +GD LIE+ + Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAMV--GCFAYGDTALIERCI 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G+E+ V+ G +L EI VP Y Y +Y++ ++ PA++ + Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEI-VPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACA 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G R ISR+D + D +LE+NV PGMT S+ P AG L Sbjct: 246 EMAVTAHTALGLRDISRTDLIVDG-DGLPHFLEVNVAPGMTETSLLPMAVEAAGDDLGTL 304 Query: 289 LLWMVEDASCL 299 ++E A+ Sbjct: 305 CRVLLEQAAAR 315 >gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111] gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493] gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493] gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 373 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 67 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 D F ++HG GEDG +Q +LELL +P Sbjct: 68 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + +K Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 245 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + KV EIN PG T +S++P+M +G LL ++E A Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 352 >gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] Length = 335 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A+L GG + E +S+ S A L+ F+V +I +VDR+ Sbjct: 12 IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D F +HG+ GEDG +Q ++L +PYT L S+++M+K +K +V Sbjct: 72 SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131 Query: 101 SSCGVP---VCPSILVNR---FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+P V S + + + +D ++ + PY +KP GGSS+G+ + + Sbjct: 132 --NGIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMSKVTHAADLQEA 189 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL 209 + ++ DQ+LIE+++ G E T GV+ L TE+ K +F+ +E KY+ Sbjct: 190 I--EKAFKEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAK-EFFDFEAKYTPG 246 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +T PA I + V ++A + + C G+ R DF+ +++EIN PG T Sbjct: 247 VATETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQT 306 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ A G + ++ + Sbjct: 307 ATSFIPQQVAAMGMKLNDFYTKLIRE 332 >gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] Length = 372 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 66 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + KV EIN PG T +S++P+M +G LL ++E A Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351 >gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7] Length = 330 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S S ++ + + ID D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ G ++++E+++DG E+TCG G + V ++F+ ++ KY+ Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 242 ITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735] gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735] Length = 331 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SIL+ R + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE Y+DG+E++ G+ L TE+ V K++F+ Y+ KY+ Sbjct: 186 RVAFMESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEV-VTKNEFFDYDAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA++ + +V + + GI R D++ D V LEIN PGMT Sbjct: 244 EITPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 394 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 77/374 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG + E +S S + AL+ F+ I + ++ + P Sbjct: 22 VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 81 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ LHG FGEDG +Q + E Sbjct: 82 PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 141 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++ +PY G+LASA MDK +K ++ + G+PV P I ++ D+ Sbjct: 142 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 201 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP + GSS G+ +++ + L + H ++L+EQ +D E Sbjct: 202 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 261 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224 + C V+ D T A+P FY ++ KY ++H +PAKI D+ Sbjct: 262 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 321 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D V EIN PG T +S+FP+ G Sbjct: 322 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 380 Query: 285 FRELLLWMVEDASC 298 FR ++ ++E A Sbjct: 381 FRTVVTDLIEGALA 394 >gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bifidobacterium longum DJO10A] gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A] gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A] Length = 395 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGVGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] Length = 361 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIES--FIEEALKYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B; D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 349 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 56/345 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A+L GGIS E +S+ S + ++ + V + ++ Sbjct: 6 IALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYPDPSGK 65 Query: 40 ----------RSVGLVLAHLKPDL-------AFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ +V D+ AF LHG GEDG +Q L+ L IP+T S Sbjct: 66 TEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGIPHTGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGS 137 G+LAS+L+MDK R+ + + G+PV P + + + D + + S P IKP GGS Sbjct: 126 GVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTLLNLSFSYPVFIKPTLGGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--------LDV 189 S+ + K + L + D++L+++ V G E++ GV+ L Sbjct: 186 SVNTGMAKTAEEAMT--LVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGKKRNPFPLVP 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 TEI PKS+F+ +E KY+ S + PA + ++ K +Q H+ +GC+G SR+DF+ Sbjct: 244 TEIR-PKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGYSRTDFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE N PGMT S+ P+ A G + +++ W++E Sbjct: 303 I--SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLE 345 >gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141] Length = 321 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 165/323 (51%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG+S EREVS +S K + +L G+ V ID+ + + + Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +++V+R + P VIKP++ GSS GI + + + + + Sbjct: 127 IVASSVGIKCASNLMVDRIQAND-----FPIVIKPIRSGSSKGIKIFQNKKQFDIYYKEH 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +E+Y+ G E + G++G+ L V EI V K+ FY Y KY+ + V+PA Sbjct: 182 PEL---GSVFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] Length = 326 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 152/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S + S L+ + V ID D Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIDK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ G +++IE ++DG E+TCG A +V V ++F+ ++ KY+ Sbjct: 186 --AFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYN-GQVQE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 243 ITPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATSF 301 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 IPQQVRAAGLEMKDVMTDIIEN 323 >gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] Length = 395 Score = 271 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P IKP + GSS G+ ++K Sbjct: 173 VVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 271 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + V+ GG+S+EREVS+++GK + L+ + ++V +I++ + + L D A+ LH Sbjct: 3 IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGE G VQAILE I Y+ SGIL+SA+ MDK +K + + GV + + + Sbjct: 63 GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 S + ++KP +GGSS+G+ D+ + L + +++LIE+ GIE+ Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLG-ENEVLIEEMKSGIEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + ++ I K F+ Y KY + + + + E+ A+ A Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYVY-FFEESLQNEINDFTIKAYNA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G +R D++ + K ++LE+N PGMT S+ P+ Y GYS+ E L +++++ Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297 >gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] Length = 324 Score = 271 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG S+E ++SL SG L F + +I + D Sbjct: 5 IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ +K D FN +HG GEDG +QA L+ I T +AL+ +K + Sbjct: 65 SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ + ++ I P +K K GSS GI + K + +P + Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+++IE ++DG E++ GV+ L +TEI ++DF+ YE KY S Sbjct: 183 ENAYLADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITT-ENDFFDYEAKYE-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + ++V +A ++ + +G SRS+F+F + + F LE+N PG+T S Sbjct: 241 EITPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S +L + +A Sbjct: 299 ILPQQAAVAGISLSQLFESAITEA 322 >gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 395 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 25/281 (8%) Query: 38 VDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D + L L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK + Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQ 148 K V+ + G+P P + V+ + + ++ P IKP + GSS G+ ++K Sbjct: 172 KVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKAD 231 Query: 149 SIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 232 DRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQ 291 Query: 196 -KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 292 NDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP- 350 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 331 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 152/324 (46%), Gaps = 35/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SIL+ R + I P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE ++DG E++ G+ A L TE+ V ++F+ Y+ KY+ Sbjct: 186 RVAFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTNNEFFDYDAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269 + PA++ + +EV + + + GI R D++ KV LEIN PGMT Sbjct: 244 EITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 S P+ AG +++L +V Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSEIV 327 >gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] Length = 323 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 151/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--VGLVLAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V I +D V + L D + L Sbjct: 21 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + V Sbjct: 81 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 140 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + V+KP GGSS+G+ ++ + + L + + LIE+ + G Sbjct: 141 VDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELV--FGMDKEALIEEVLHG 198 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +E++ V+ I D++ YE KY+ + + + P + E+ + A + Sbjct: 199 VEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFAKDS 257 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L ++E Sbjct: 258 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDLLIE 316 Query: 295 DA 296 + Sbjct: 317 SS 318 >gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] Length = 361 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +LK D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] Length = 353 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVD--------RSVGLVLAH 48 + ++ GG S E VS+ S +ALE F VS +D VLA Sbjct: 8 IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +P ++ + VLHG GEDG VQ + L+ P+ +G Sbjct: 68 GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L S+++MDK+ K ++ G+ P + +N + + + P +KP Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L +++S ++++EQ VD EL C V+G L + + Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASL--DPRIVVEQGVDARELECAVLGKRQLKASVV 245 Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +D+Y Y KYS ST ++PA IP + +V+ +A + +A+ G++R DF + Sbjct: 246 GEIRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + ++ EIN PG T +S++P + +G +L+ +VE A Sbjct: 306 DDRTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351 >gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] Length = 342 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 58/335 (17%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVL------------------------------ 46 S A++ + ++V+ + + + L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60 Query: 47 ------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 K D LHG GEDG +Q +L+L IP+ + +SA MDK+ Sbjct: 61 GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGIIVI 144 + ++ G+P + + S L S P +KP GSS+G+ Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYS 201 + + + + +++ ++LIE+ + G E+ C V+G+ P ++FY Sbjct: 181 ENREELRAAIAKAA--KEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYD 238 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY S S +PA + + + ++ A A+Q +GC G++R DF +V E Sbjct: 239 YEAKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRN-GSEVLLNE 297 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T +S++P++ + G S +EL+ +++ A Sbjct: 298 LNTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332 >gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] Length = 325 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P + Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLP--MYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321 >gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 329 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL +V DV + +L P + F VLHG Sbjct: 22 VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +LEL +PY + A + K +K +V+ G+ V + + + Sbjct: 82 GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ P +KP +GGS+ G + + ++P L+ S + + D LIEQ V Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAALV--SCFAYSDTALIEQQV 199 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G +L EI VP Y Y +Y++ + PA++ ++ + Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEI-VPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAA 258 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+A+G R +SR+D + D + +V++LE+NV PGMT S P AG F + Sbjct: 259 DAAVTAHRALGLRDVSRTDLIIDE-TGRVYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVV 317 Query: 289 LLWMVEDA 296 + A Sbjct: 318 CRELAHRA 325 >gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-66c26] gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CIP 107932] gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-76w55] gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-97b34] gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-37x79] gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196] gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile R20291] gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CD196] gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile R20291] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 V SIL+ + ++ P IKP++ GSS GI I K + + + + ++ Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 H ++++IE+ +DG E+ C V+G+ L V + + F+ Y KY+ +S +PA+I Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 LD K +Q A + ++ +GC G +R D P ++ + E+N PG T S +P M Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347 Query: 280 YAGYSFRELLLWMVE 294 G SF E+L ++E Sbjct: 348 GIGLSFEEILDKIIE 362 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNW 49 >gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] Length = 361 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S L D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPINID 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ D + ++ P +IKP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + +S + ++IE++++ E+ C V+G+ E+ V Sbjct: 187 INVAYSENQIESFIKESL--KYDLTIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFL ++ +G RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile 630] gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 V SIL+ + ++ P IKP++ GSS GI I K + + + + ++ Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 H ++++IE+ +DG E+ C V+G+ L V + + F+ Y KY+ +S +PA+I Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 LD K +Q A + ++ +GC G +R D P ++ + E+N PG T S +P M Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347 Query: 280 YAGYSFRELLLWMVE 294 G SF E+L ++E Sbjct: 348 GIGLSFEEILDKIIE 362 Score = 61.3 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNW 49 >gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135] gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135] Length = 365 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 158/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+SL S SAL + V +D+ Sbjct: 8 LIFGGVSFEHEISLRSACGIYSALMKLDKYNVFSSFIDKITGVWYLLDSVPDDPKLIKKD 67 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + + LK D+ F ++HG GEDG +Q L++++IP SGIL SA+ Sbjct: 68 SSAIISLIPGYGIFVNNKDLKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAI 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +P+ P I ++ D + + P ++KP GSS+G Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197 I + + I ++ + ++IE+++ E+ C V+G+ + + EI + Sbjct: 188 ISIAYNETQIEK--CIEEAFAYDLTVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDF 245 Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS+ + +PA + +++ AF ++ + RG++R DFL + + Sbjct: 246 VFYDYDAKYSTAPGNSVVFNIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDT 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ EIN PG T +S+F +M + G + L+ ++ A Sbjct: 306 DLVYINEINTIPGFTDISMFSKMCEHDGLDYGSLVDKLIALA 347 >gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile ATCC 43255] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 9/255 (3%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F +LHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPILHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 V SIL+ + ++ P IKP++ GSS GI I K + + + + ++ Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 H ++++IE+ +DG E+ C V+G+ L V + + F+ Y KY+ +S +PA+I Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 LD K +Q A + ++ +GC G +R D P ++ + E+N PG T S +P M Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347 Query: 280 YAGYSFRELLLWMVE 294 G SF E+L ++E Sbjct: 348 GIGLSFEEILDKIIE 362 Score = 61.3 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNW 49 >gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 339 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 156/339 (46%), Gaps = 53/339 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG+S ER+VSLSSG ++AL + G V +D+ +G+ H++P Sbjct: 3 IIVLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDL--YLGINNKHIEPAYINLKSNK 60 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F LHG+ GE+G +QA+L+ Sbjct: 61 TFSYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLD 120 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + I YT +G + S L+MDK SK+++ S + V+ T I+ P V+KP Sbjct: 121 INGIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPC 180 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ +++ + + + + + ++IE+ + G E + G++ +L V EI Sbjct: 181 SCGSSVGVTMVETPSELNSAI--EFAKKYENSVIIEEKIVGREFSVGILNGEALPVIEIK 238 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P FY Y+ KY + + PA I +I +Q A H + SR DF+ D Sbjct: 239 -PLIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQS 297 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + LE N PGMTP S+ P+ A ++ +L + Sbjct: 298 NNA-YCLEANTLPGMTPTSLLPQEALANDITYSDLCEKI 335 >gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC 8503] gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503] Length = 330 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S S ++ + + ID D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ G ++++E+++DG E+TCG G + V ++F+ ++ KY+ Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + +Q + +G +G+ R D++ P + LEIN PGMT S Sbjct: 242 ITPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-63q42] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%) Query: 46 LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++V S G+ Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170 Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 V SIL+ + ++ P IKP++ GSS GI I K + + + + ++ Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219 H ++++IE+ +DG E+ C V+G+ L V + + F+ Y KY+ +S +PA+I Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 LD K +Q A + ++ +GC G +R D P ++ + E+N PG T S +P M Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347 Query: 280 YAGYSFRELLLWMVE 294 G SF E+L ++E Sbjct: 348 GIGLSFEEILDKIIE 362 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNW 49 >gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] Length = 394 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 155/362 (42%), Gaps = 72/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V GG S E E+S+ S A++ + + V+ I + ++ Sbjct: 5 IGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYRKLD 64 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 K D+AF VLHG+FGEDG +Q + EL Sbjct: 65 ELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQGLFEL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 + IPY +L+SA+ MDK+ K V+ G+PV + + + Sbjct: 125 MGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVEQTLG 184 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG- 183 P ++KP GSS+GI + + + ++ ++H +LL+EQ + D E+ C V+G Sbjct: 185 YPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSH--KLLVEQTIVDLKEINCSVLGN 242 Query: 184 --DASLDVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +A E + + SY+ KY + LPA+IP ++ ++Q+LA Sbjct: 243 YENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAVDT 302 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q +GC G+SR DFL D + +V+ EIN PG + +F +L+ +++ Sbjct: 303 FQVLGCAGVSRIDFLLDQATNEVYVNEINTIPGSLSFYL----WEATDKNFGQLVNDLID 358 Query: 295 DA 296 A Sbjct: 359 TA 360 >gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 358 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E +VS+ S +ALE + + V +L+ Sbjct: 10 IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ ++ +P G Sbjct: 70 TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194 G+ + Q L Q ++ H LL E++V G E+ V+ D EI Sbjct: 190 GVAKVHASQEFAAALEQ--AFRHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247 Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S FY+Y KY + +PA +P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T +S++ + A +G S+ E++ +V Sbjct: 307 SDMRFVINELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347 >gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae FF5] Length = 264 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 144/259 (55%), Gaps = 14/259 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F ++HG FGEDG +Q +L +L +P+ + +L+SA+ MDK +K+++ G+ V P + Sbjct: 1 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60 Query: 113 VNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++R ++ + P IKP GSS+G+ + + L ++H +LLI Sbjct: 61 LSRGESLSFTEAADQLGLPMFIKPANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLI 118 Query: 169 EQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225 EQ + G E+ C V+G+ + V+ + +FY+Y+ KY + + + +PA++P D+ Sbjct: 119 EQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 178 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +V+ +A A++ +GC G+SR DF R + E+N PG T +S++P++ +G S+ Sbjct: 179 QVREVALQAYKVLGCAGLSRVDFFVTE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSY 237 Query: 286 RELLLWMV----EDASCLR 300 EL+ ++ E A R Sbjct: 238 AELIHRLIVLALERADQAR 256 >gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] Length = 332 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLA 54 +AVLMGG SSE ++SL+SG ++L+ ++V + + + G A K D + Sbjct: 6 IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65 Query: 55 F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 F N +HG GEDG +QA LELL IP T SA++ +K + V+ Sbjct: 66 FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ VN+ + + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSL 209 L +++ Q+LIE ++ G E++ GV L EI VP DF+S E KYS Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEI-VPDGDFFSLEAKYS-G 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S ++PA++ EVQ L + + +GI R DF+F K ++E+N PG++ Sbjct: 242 KSQEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFHE--GKPHFVEVNTNPGLS 299 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 SI P AG S E+ +E Sbjct: 300 KESIIPREFKAAGLSLAEVFGEAIEH 325 >gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis AD011] gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis V9] Length = 378 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 77/374 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG + E +S S + AL+ F+ I + ++ + P Sbjct: 6 VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ LHG FGEDG +Q + E Sbjct: 66 PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120 ++ +PY G+LASA MDK +K ++ + G+PV P I ++ D+ Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 185 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP + GSS G+ +++ + L + H ++L+EQ +D E Sbjct: 186 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224 + C V+ D T A+P FY ++ KY ++H +PAKI D+ Sbjct: 246 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D V EIN PG T +S+FP+ G Sbjct: 306 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 364 Query: 285 FRELLLWMVEDASC 298 FR ++ ++E A Sbjct: 365 FRTVVTDLIEGALA 378 >gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum JIP02/86] gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 328 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 163/327 (49%), Gaps = 33/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AV+MGG S E +SL SG+ + L+ + + + ++ + D S Sbjct: 3 VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D+A N +HG GEDG +Q+ EL++IPYT SAL+ +K + V++ Sbjct: 63 FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122 Query: 102 SCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P SI + + + + + + P+ +KP + GSSLG+ + + L Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLGVSKVDALDQLEKAL--E 180 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ +++LIE Y++G E++ GV+ L +TEI + ++DF+ YE KY S Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEI-LSQNDFFDYEAKYL-GKSEE 238 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + V A + ++G G SR+DF+ ++ ++EIN PG++P SI Sbjct: 239 ITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSI 296 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 FP+ A +A ++L + A + Sbjct: 297 FPQQAMFAKMDMPQMLDNEITLALSRK 323 >gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] Length = 327 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG L+ ++ +I + D Sbjct: 5 VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDGL+QA ELL IP T G +AL+ +K V+ Sbjct: 65 SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N ++ I P +K K GSS GI + + + + Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDRLKEAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++DG E++ GV+ L +TEI V ++DF+ YE KY S Sbjct: 183 EFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEI-VTENDFFDYEAKYE-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I K V + A A+ + G SRS+F+F + + F LE+N PG+T S Sbjct: 241 EITPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTES 298 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 I P+ A AG S EL +E+ Sbjct: 299 ILPQQAGEAGISLSELFGGAIEE 321 >gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] Length = 333 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 37/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V + + D Sbjct: 8 IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL++IPY+ SG+L AL+ +K + + Sbjct: 68 SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127 Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 +S GV V SIL+ R + + + P +KP+ GSS G+ +K + L Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210 ++ + +IE Y+ G+EL+ G + TE+ V ++F+ Y+ KY+ Sbjct: 188 --RVAFMQNEAAMIESYMKGVELSIGCYKTSEKAVVFPATEV-VTSNEFFDYDAKYN-GQ 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267 + PA+I D K+V + + C GI R D++ D V LE+N PG Sbjct: 244 VQEITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTPG 303 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295 MT S P+ AG E+L +VE+ Sbjct: 304 MTATSFIPQQVRAAGLDITEVLTEIVEN 331 >gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] Length = 330 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S S ++ + + ID D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ G ++++E ++DG E+TCG G + V ++F+ ++ KY+ Sbjct: 185 --AFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 242 ITPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] Length = 334 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D++R L + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I LDL + + D++++E+YV G E+ Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 191 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 250 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 395 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + G+P P + V+ + + ++ P +KP + GSS G+ ++K Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232 Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 L +++ H ++L+EQ +DG E+ C V+ + D E + P Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 349 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 156/311 (50%), Gaps = 19/311 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG+ A AL G V+ DVD + L +PD+ + +LHG Sbjct: 39 VVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHG 98 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++ +LEL +PY +G AS L+ DK +K+ + + G+ + + + Sbjct: 99 AGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRD 158 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V+KP +GGS+LG+ + + ++ + +GD LIE+ Sbjct: 159 LGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFA--YGDSALIER 216 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 VDG+E+ V+ G +L EI V Y ++ +Y+ + PA++ D Sbjct: 217 AVDGVEIAVSVIDGMDGPVALPAVEIIV--DGPYDFDARYNPGRVEYFAPARLSPDQAAH 274 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V +A AHQA+ R +SR+D + LE+NV PGMT S+ P+ A AG+ Sbjct: 275 VAGVAVAAHQALDLRHLSRTDLIL-QTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLG 333 Query: 287 ELLLWMVEDAS 297 L +VE A+ Sbjct: 334 TLYRQVVEHAA 344 >gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella denticola F0289] gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola F0289] Length = 332 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GE+G++Q +LL +PY+ SG+L A++ DK + Sbjct: 68 SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SIL+ R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++++E ++DG+E++ GV + TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEV-VTSNEFFDYNAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA++ + + V + + GI R D++ D V LEIN PGMT Sbjct: 244 EITPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] Length = 305 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 187/301 (62%), Gaps = 3/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGG S ER VS+ SGKAC A++ G++V + D +++ + + PD+ FN LHG Sbjct: 7 ILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++ + ++ + + Sbjct: 67 KYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + +++KP+ GSSLG+ + + + L+ E Y++G E+ Sbjct: 127 NKISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ ++ EI +PK +FY Y+ KYS S + H++P KIP + +++R+A +AH+++ Sbjct: 187 VLGNKAIGSVEI-IPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLK 245 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG++RSDF P + K++ LEIN QPGMT +S+ PE+A G SF EL+ WM++DAS Sbjct: 246 CRGVTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASIN 304 Query: 300 R 300 R Sbjct: 305 R 305 >gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Mississippi] Length = 334 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D++R L + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I LDL + + D++++E+YV G E+ Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 191 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCLG 250 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] Length = 330 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S S ++ + + ID D Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ G ++++E ++DG E+TCG G + V ++F+ ++ KY+ Sbjct: 185 --AFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYN-GQVDE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 242 ITPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 297 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 24/282 (8%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V +D RS L DL F +LHG +GEDG +Q +LEL+ +PY SG+LASAL MD Sbjct: 24 VVAVDGTRSSLGDL-----DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMD 78 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGIIVI 144 K +K V+ G+PV P V + + + P +KP + GSS+G+ + Sbjct: 79 KHFTKTVLQQAGIPVAPWTTVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKV 138 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------VTEIAVPKSD 198 + + LD ++ D++LIE V G E+ V+G + EI V D Sbjct: 139 R--EWPELDAAMDIAFAEDDRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRD 196 Query: 199 FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y KY + V PAK+ +++ L A AIG G++R DF Sbjct: 197 FYDYAAKYLDAPGIDLVCPAKLTDAELVQMRALGVRAFDAIGGEGLARVDFFLTAEG--F 254 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 EIN PG TP+S+FP G S+ EL+ +++ A Sbjct: 255 VVNEINTMPGFTPISMFPRCWQETGLSYPELIGELIQVALAR 296 >gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis] Length = 347 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 46/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG+S E +S+ S L+ ++ I + + +L Sbjct: 6 IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + DL VLHG GEDG +Q +LE+ IPY + Sbjct: 66 RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V+ + G+P +V T P +KP + GSS G+ + Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFGVSKV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200 + + L ++ + ++LIE+ V G E+ C ++G+ + + +A+ F Sbjct: 186 SGKEELAAALAEARQF--DSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243 Query: 201 SYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S NS+ ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S +++ + A R Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345 >gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 364 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 48/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGI 141 L SA+SMDK +K+++ S G+ V P +N + + L S +KP GSS+G+ Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMNFMRPWEELVECLGSSTLFVKPANSGSSIGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197 + ++ ++L+E + G E+ CGV+ G + V EI + Sbjct: 186 SKVSNALEYAEAFAIAAC--QDAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKEG 243 Query: 198 D-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + + P+ + DI + +Q L+ A + + +G +R DF Sbjct: 244 QAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-DG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T S++P+M +GY +L+ +VE A Sbjct: 303 AIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYA 343 >gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] Length = 326 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S + S L+ + V ID D Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIAK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213 +++ G +++IE ++DG E+TCG A +V V ++F+ ++ KY+ Sbjct: 186 --AFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYN-GQVQE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ ++ ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 243 ITPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATSF 301 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 IPQQVRAAGLEMKDVMTDIIEN 323 >gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi] gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi] Length = 361 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45 ++ GG+S E E+S S + AL D + + + +D+ G+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66 Query: 46 ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + + +LIE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIE--FFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA++ + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ EIN PG T +S+F +M ++ G F++L+ ++ A Sbjct: 305 GKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLINYA 346 >gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] Length = 325 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 34/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ T D + P +K K GSS G+ + ++ +P + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEVQLP--MYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++ G E++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 + P+ A AG S EL +E Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321 >gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] Length = 321 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 165/323 (51%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG+S EREVS +S K + +L G+ V ID+ + + + Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +++V+R + P VIKP++ GSS GI +++ + + + Sbjct: 127 IVASSVGIKCASNLMVDRIQAND-----FPIVIKPIRSGSSKGIKILQNKKQFDIYYKEH 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +E+Y+ G E + G++G+ L V EI V K+ FY Y KY+ + V+PA Sbjct: 182 PEL---GSFFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] Length = 361 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVS----------------------QIDVD 39 ++ GG+S E E+S S + AL D + + ID D Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66 Query: 40 RSVGLVL----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + L +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIES--CIEEALKYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346 >gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 331 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 153/326 (46%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q +L+ +PY+ SG+L AL+ +K + Sbjct: 68 SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV V S+L+ R + + + P +KP GSS G+ +K+ + L Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++++E ++DG+E++ G+ L TE+ V ++F+ Y+ KY+ Sbjct: 186 RVAFMESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEV-VTSNEFFDYDAKYN-GQVK 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ + +V ++ + GI R D++ S V LEIN PGMT Sbjct: 244 EITPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKEVLTEIVEN 329 >gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] Length = 361 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] Length = 361 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] Length = 361 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--RYDLAIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a] gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1] Length = 361 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1] Length = 311 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 18/312 (5%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG+S EREVSL SG+ A AL G V + DVD ++ L +PD+ LHG Sbjct: 2 AVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHGG 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GE+G VQ ILELL+IP+ + A + DK K + G+ + + T Sbjct: 62 EGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFREL 121 Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P V+KP +GGS+LG+ V++ +P ++ SS+ + D +L EQ+ Sbjct: 122 GAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAMV--SSFAYADTVLAEQF 179 Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G E+ V+ D +L E+ VP S FY Y +Y+ +T PA++ D+ + + Sbjct: 180 VAGTEVAVSVVHDGDEARALPPVEVEVP-SGFYDYTSRYTPGAATFHCPARLSSDVQQTL 238 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+ +G R +SR D + D +V LE+NV PG+T S+ P A G Sbjct: 239 AETALTAHRLLGMRDVSRMDAIVDG-DGRVHVLEMNVSPGLTDTSLLPTAVAADGSDLAT 297 Query: 288 LLLWMVEDASCL 299 + +V+ A+ Sbjct: 298 VYQALVDRAATR 309 >gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40] Length = 361 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +LK D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] Length = 326 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 15/260 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+AF VLHG +GEDG +Q EL +PY G+LASA +MDK +K++VSS G+ V Sbjct: 68 VDVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSAGIAVTDE 127 Query: 111 ILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++V R ++ + P +KP +GGSS+G+ + + D + + + + Sbjct: 128 VIVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAEL--DDAIAVALQSDSKAI 185 Query: 168 IEQYVDGIELTCGVMG------DASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKI 219 +E + G E+ GV+ +AS+ T FY +E KY T +PA Sbjct: 186 VEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDGEEGFYGFETKYLDEGVTATIPAPY 245 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 ++ ++++ LA A +A+GCRG+SR DF EIN PG TP+S++P++ Sbjct: 246 SEEVTQQIRSLAITAFRALGCRGLSRVDFFLTERG--PVLNEINTMPGFTPISMYPQVWK 303 Query: 280 YAGYSFRELLLWMVEDASCL 299 +G S+ ELL +++ A Sbjct: 304 ASGVSYPELLHTLIQTALAR 323 >gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis] Length = 347 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 46/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG+S E +S+ S L+ ++ I + + +L Sbjct: 6 IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + DL VLHG GEDG +Q +LE+ IPY + Sbjct: 66 RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V+ + G+P +V T P +KP + GSS G+ + Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFGVSKV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200 + + L ++ + ++LIE+ V G E+ C ++G+ + + +A+ F Sbjct: 186 SGKEELAAALAEAREF--DSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243 Query: 201 SYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + S NS+ ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S +++ + A R Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345 >gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] Length = 325 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+LMGG S E VSL S A L+ + + +I + D Sbjct: 4 IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ L + D AFN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 64 SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +N+ T + + P +K + GSS+G+ ++ I + Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDIDQAI-- 181 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ +++IE+++ G E++ GV+ L +TEI V ++DF+ YE KY S Sbjct: 182 EKAFEVDTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEI-VSENDFFDYEAKY-QGKSK 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ + K+V+ +A + + +G SRS+++ + LE+N PG+T S Sbjct: 240 EITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNS 297 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S L +E+A Sbjct: 298 ILPQQAKAAGISLTNLFDNAIEEA 321 >gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] Length = 331 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+L+ R + I P +KP GSS G+ +K + L + Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAPALRK 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE +++G+E++ G+ TE+ V K++F+ Y+ KY+ Sbjct: 188 --AFMESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEV-VTKNEFFDYDAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA++ + +V + + GI R D++ D V LEIN PGMT Sbjct: 244 EITPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] Length = 357 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 47/339 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG S+E E+S+ + K+ + L+ +K+ I VD+ Sbjct: 6 LLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKELVV 65 Query: 41 ----SVGLVLAHLKP-DLA------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +V +++ D F +HG F EDG +Q +++++ Y + +L+SA+ Sbjct: 66 EGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSSAV 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLG 140 MDK + V + G+ LV ++ + I IKP GSS+G Sbjct: 126 CMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSSVG 185 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198 + + K + I L++ ++ + +++L+E+ V G EL VMG+ L + K + Sbjct: 186 VTKVTKKEEIEPALIE--AFKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVTRE 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ YE KY + H++P + + KE+Q +A A+ C+G +R D RK+ Sbjct: 244 FFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRKML 303 Query: 259 WLEINVQPGMTPVSIFPEM-AAYAGYSFRELLLWMVEDA 296 EIN PGMT VS+ P M ++ + L ++E A Sbjct: 304 VNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELA 342 >gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 331 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 35/322 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAH---- 48 +A++MGG + E +SL SG+ L F+V +I + D++ + Sbjct: 4 IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 LK D FN +HG GEDG++QA LL+IPYT ++++ +K Sbjct: 64 TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123 Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+ PS +N+ + P +KP + GSSLGI + Q L Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVY--QERELAKA 181 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ ++++E ++ G E++ GV+ L +TEI + ++DF+ +E KYS S Sbjct: 182 IEHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEI-ISRNDFFDFESKYS-GKS 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA++ + K++++LA ++ + GISRS+++ ++ F+LEIN PG++ Sbjct: 240 QEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL--VNGDPFFLEINTIPGLSEE 297 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 SI P+ AG S EL + Sbjct: 298 SILPKQLKIAGISLSELFKKNI 319 >gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Thermoanaerobacter tengcongensis MB4] gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Thermoanaerobacter tengcongensis MB4] Length = 389 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 73/363 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVS+ +G + ++ + V R Sbjct: 4 VAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDIP 63 Query: 49 ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72 + D+ F HG GEDG +Q + Sbjct: 64 SLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLF 123 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 +L IPY SG++ SA MDK+ K + + +P+ + R + + Sbjct: 124 QLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESK 183 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 + P +KP GSS+GI K + + + ++ ++++E+ V D +E+ C VM Sbjct: 184 LKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR--KIIVEEAVKDPMEVNCSVM 241 Query: 183 G---DASLDVTEIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G D + + E+ VP +F SY+ KY ++T +PA IP + KE+Q LA Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 Q + C G++R DFL + + KV+ EIN PG S + G SF +L+ ++ Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLI 357 Query: 294 EDA 296 E A Sbjct: 358 EYA 360 >gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto Rico] Length = 333 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I LDL + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 329 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 163/314 (51%), Gaps = 19/314 (6%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 VL GG++ EREVSLSSG A L AG + D D + LA D F LHG Sbjct: 20 VVLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGA 79 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG ++A+L+L +PY S + L+ DK +K VV S GV + + T Sbjct: 80 TGEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFREL 139 Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GGS+LG+ + + + +P ++ S + +GD +++E++ Sbjct: 140 GAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAMV--SCFAYGDTVMVERF 197 Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 VDG+EL V+ G +L EIA P+S + Y +Y+ + + PA++ ++ + Sbjct: 198 VDGVELALSVVDLGEGPQALPAVEIA-PESGVFDYTSRYTPGLTEYHAPARVSDEVAGKA 256 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA H+A+G +SR+D + P +V +LE+NV PG+T S+FP +G S + Sbjct: 257 AELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGD 315 Query: 288 LLLWMV-EDASCLR 300 +L ++ AS R Sbjct: 316 VLAGLLTRRASTTR 329 >gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 397 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 115 DPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+++ G+P P I+V+ + + ++ P +KP + GSS G+ + K + Sbjct: 175 VVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAED 234 Query: 150 IPL-----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195 + +++ H ++LIEQ +DG E+ C V+ + D E + P Sbjct: 235 LETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294 Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY ++ KY +++HV PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ ++E Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393 Score = 47.8 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S +A++ F+ + + + ++ P Sbjct: 8 IVVLYGGRADEHSISCISTAGVLAAMDTERFEPIPVGITKDGKWIIDGEDP 58 >gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Virginia] Length = 333 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ ++ P+VIKP++GGS++G+ I LDL + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] Length = 311 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV GG SSEREVSL SG+ACA+ALE + F+V + +D + + F+ LHG Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADALPAGLDPQRHVVFSTLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ + Y ++SAL+MDK +K+ ++ G+ V P + Sbjct: 65 TFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPR 124 Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + V+KP GSS+G+ ++ + + L + +IE+ + G E Sbjct: 125 PEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI----QNGRWIIERRIFGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 L GV+ ++ V EI PKS Y Y KY+ + ++ PA + + +++Q A A Sbjct: 181 LAVGVLNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFA 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A GCR +R DF+ +++ LEIN PGM S+ P A G F L+ MV A Sbjct: 240 ACGCRDYARVDFIL-GDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPA 298 >gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] Length = 315 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ++L++ IPY + A + DK +K ++ G+ +++ T Sbjct: 66 GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125 Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V++ +P ++ + S +GD +L+E+ Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS--YGDTVLVEK 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 Y++G E+ GV+ G +L +I + Y Y +Y++ +T+ PA++ + Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIE-ATNGVYDYTARYTAGLTTYRTPAELSPETAAA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 LA AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S Sbjct: 243 AGDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLG 301 Query: 287 ELLLWMVEDA 296 ++ +VE A Sbjct: 302 DVFATLVERA 311 >gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] Length = 333 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 161/327 (49%), Gaps = 32/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG + E E+SL S L+ + F V +I + D Sbjct: 5 IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ L +K DLAF ++HG+ GEDG +Q L+++ + YT L SAL+M+K +K ++ Sbjct: 65 TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124 Query: 101 SSC-GVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G+ + PS+ ++ ++ ++ + PY +KP GGSS+G+ +K+ + + Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQLDELSSAI 184 Query: 155 LQSSSWNHGDQ-LLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 ++ + + +L+E++V G E + G+ G L TE+ + +F+ +E KY Sbjct: 185 DRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEVITTR-EFFDFEAKYIPG 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + PA + + V++L + + C+G+ R DF + + K +++EIN PG T Sbjct: 244 LTKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINTIPGQT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG + ++E A Sbjct: 304 ETSFIPQQVRAAGLQETDFYTELIEQA 330 >gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331] gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331] Length = 372 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 154/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 ++VL GG S+E E+S+ S K + L+ A + +S I + L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + KV EIN PG T +S++P+M +G LL ++E A Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351 >gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] Length = 330 Score = 268 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 162/329 (49%), Gaps = 37/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG + E +SL+S K L+ + + V QI +D Sbjct: 5 IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D AF ++HG GEDG +Q ++L IPYT SA++M+K +KQ+V Sbjct: 65 SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124 Query: 101 SSCG-VPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S+ + + S+ + + + + P +KP GGSS+G+ + + + + Sbjct: 125 SAVPDLNIAKSVQLFSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGMSKVNEWDDLDKAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCG---VMGD-ASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ G ++LIE+++ G E T G V G+ L +TEI K +F+ +E KY++ + Sbjct: 184 -QRAFAEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTK-EFFDFEAKYTAGLT 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V PA++ ++ + + + + + C+G+ R DF+ ++ +++E+N PG + Sbjct: 242 NEVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFIL-KDNKDFYFIEVNTIPGQSEN 300 Query: 272 SIFPEMAAYAGYS----FRELLLWMVEDA 296 SI P+ AG + + L+ ++ A Sbjct: 301 SIIPQQVRAAGLTLTYFYGNLIDEALKTA 329 >gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278] gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278] Length = 367 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 58/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A+L GG S+E +VS +S +L+ + ++ I + VLA Sbjct: 8 VAILFGGRSAEHDVSRASAANIFRSLDAGRYALTLIGITHDGRWVLADAVNDATSAALIV 67 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D+ F VLHG GEDG VQ LEL ++ Y Sbjct: 68 PADGPQIVLLPAGRGRALAIDGSAAAPRELAFDVIFPVLHGPNGEDGTVQGALELADVAY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLK 134 +L SA +MDK +K+++ G+P+ P + + + ++ + S +KP Sbjct: 128 VGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAASPVSYDDAARAVGSSELFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DASLDVTE 191 GSS+GI + + ++ ++LIE+ + E+ C V+ D + +E Sbjct: 188 LGSSVGISKTRDAAEFEAACQLALRFDR--KILIERCIAPVREIECAVLEHADGQIKASE 245 Query: 192 ----IAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + FYSYE KY+ + +PA++ + + ++++A A+ C ++R Sbjct: 246 LGEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPAVAQRIRKMATEVFGALCCESLARV 305 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF +++ E+N PG T +S++P+M AG L+ +V A Sbjct: 306 DFFVR--GDEIYVNEVNTLPGFTNISMYPKMWEAAGLPQPALMDELVAHALAR 356 >gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM] Length = 318 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 35/324 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48 MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 1 MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V++ Sbjct: 61 PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120 Query: 104 GVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 G+P S + + + + P +KP + GSSLGI +K+ L + Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL--EKA 178 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + D++L+E ++DG+E++ GV+ L +TEI +P+++F+ YE KY S ++ Sbjct: 179 FLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGASQEII 236 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P SI P Sbjct: 237 PARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILP 294 Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299 + A G S +L VE A Sbjct: 295 QQARIYGISITDLCGNEVEKALAK 318 >gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212] gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 373 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAYSPDH 67 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 D F ++HG GEDG +Q +LELL +P Sbjct: 68 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + +K Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + + D L++E + G E+ C V+G+ + + Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDHLMVEPRIRGREIECAVLGNGAPKASL 245 Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARVDF 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + KV EIN PG T +S++P+M +G LL ++E A Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 352 >gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 323 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 168/307 (54%), Gaps = 19/307 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L AGF V DV+ ++ +A +P++ + ++HG+ Sbjct: 9 IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG +Q +LE L IP+ S + S L+ +K +K +++S G+P + + Sbjct: 69 GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +H +S P VIKP GGS+LG+ + + ++ ++ +G +L++EQ + Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAMVD--AFAYGQKLMVEQRI 186 Query: 173 DGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ++ V +GD +L EI+ Y Y+ +Y++ + + +PA++ + +++ Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEIST-DGGRYDYDARYTTDETEYFVPARLESNALADLR 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287 A AH A+G R +SR DF+ D ++++ NV PGMT S+ P+ A A YSF Sbjct: 246 AAAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSFAA 304 Query: 288 LLLWMVE 294 +V+ Sbjct: 305 FCKEVVD 311 >gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A] gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa] gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A] Length = 346 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 96/335 (28%), Positives = 172/335 (51%), Gaps = 38/335 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------DVDRSVGL-- 44 +A+++GG S E +VS+S+G A + ++ A + + +I D D+ + + Sbjct: 9 IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68 Query: 45 --------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 ++ DLA+ +HGN GE+G++Q ++L +PYT G SAL+ +K Sbjct: 69 NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128 Query: 97 KQVVSSCGV-PVCPSILVNR---FTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149 VV S GV V S L++R +D + L+ P +KP GGSS+ +K + Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTE-IAVPKSDFYSYE 203 + + + + Q+L+E++++G E CGV+ DA +TE I S+++ Y Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDSEYFDYN 248 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ +S+ V PA++ + ++ + + + + CRG+ R D+ ++P +++LE+N Sbjct: 249 AKYN-GSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEVN 307 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 PG TP SI P+ A AG S +L ++E A Sbjct: 308 TIPGQTPESIVPQQARAAGISTADLYHMVIECALA 342 >gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 369 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 146/314 (46%), Gaps = 24/314 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + V+ GG S E EVSL+S A AL AG V+ + +DR + Sbjct: 23 VVVIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEV 82 Query: 51 ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 A +LHG GEDG + A+ EL +PY S + A AL+MDK +K V + GV Sbjct: 83 LRSCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRT 142 Query: 108 CPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 P ILVNR + +++P P V+KP+ GSS G+ ++ + + ++ D++ Sbjct: 143 APGILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAV--EAALTLDDRV 200 Query: 167 LIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 L+E+ V G E+ V+G EI + F+ KY ++ ++PA + Sbjct: 201 LVEEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYD-GSARFLVPAPLSD 259 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ A + A+GC G++R DF E+N PG T S P M A A Sbjct: 260 AQLGVLREAAVTVYDALGCAGVARVDFFLTDAG--PVLNEVNTMPGFTSHSQVPRMFAAA 317 Query: 282 GYSFRELLLWMVED 295 G + ELL ++ D Sbjct: 318 GVPYPELLELLIAD 331 >gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101] Length = 364 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDR--------SVGLVLAH 48 + ++ GG+S E VS+ S A+AL +++S +D+ VLA Sbjct: 8 LGLVFGGVSGEHAVSIRSANTVAAALRRGANAERYQLSCFYIDQWGHWWPPAVADAVLAK 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 P + VLHG GEDG +Q + L+++P+ SG Sbjct: 68 GTPASREELPAAPLRPGFQGFPEGALDMQVWVPVLHGPNGEDGTIQGLFSLMQVPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +L SA+ MDK K ++ G+P P V+ +++ + + P IKP Sbjct: 128 VLGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQELEADPQALLDRLEQQLGYPCFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + L ++S H +L++EQ +D EL C V+G S+ + + Sbjct: 188 LGSSVGISKATNRSELLAGLELAAS--HDPRLVVEQGIDARELECAVLGGRSMQASVLGE 245 Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y Y+ KYS S V+PA++ I + +A A +A+ G++R DF D Sbjct: 246 ICFDADWYDYDTKYSDGKSHTVIPAEVSSAISDRARSMAIAACRAVAAEGLARVDFFLDR 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T S++P + +G L+ +V+ A Sbjct: 306 SSGDLWLNEINTLPGFTSQSMYPMLWEASGLPLDALVHQLVQLA 349 >gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] Length = 361 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31] gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31] Length = 356 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 62 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + ++ P ++KP GSS+G Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 182 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFL ++ + RG++R DF + S Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341 >gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] Length = 361 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 332 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SIL+ R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE ++DG+E++ GV TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEV-VTSNEFFDYNAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269 + PA++ + V + + GI R D++ V LEIN PGMT Sbjct: 244 EITPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] Length = 385 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 16/260 (6%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++++ G+ + P Sbjct: 122 VDVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPY 181 Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 ++ D + + P +KP +GGSS+GI + + L + + ++L Sbjct: 182 TVLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARA--VDPKVL 239 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPA 217 +E V G E+ CGV+G E ++P + FY +E KY S + +PA Sbjct: 240 VEAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPA 299 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P ++ V+++A A A+ C G++R D P V E+N PG TP S+FP M Sbjct: 300 NLPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRM 358 Query: 278 AAYAGYSFRELLLWMVEDAS 297 A G + L+ +V A+ Sbjct: 359 WAATGLDYPRLVDRLVALAT 378 Score = 63.6 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 +AVL GG S+E +S S + AL+ + V + + VL PD Sbjct: 11 IAVLYGGRSTEHAISCVSAGSVLRALDRRRYDVVAVGITPDGRWVLGPDDPD 62 >gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 320 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG+S ER+VSL SG A L+ G V +DVD L PD+ + ++HG Sbjct: 14 IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q IL L++PY + + K +K V + GV S+ + + Sbjct: 74 GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + ++ + + + ++ LIE Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAMV--ACFAYDERALIEA 191 Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G E+ V+ + + V Y ++ +Y+ S + PA++ + VQ Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+ +G +SR+D + D +++++NV PGMT S+ P A AG L Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQ-GTPWFIDVNVVPGMTETSLLPLAAEAAG-DLPGL 309 Query: 289 LLWMVED 295 +V Sbjct: 310 YDALVHH 316 >gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 317 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 170/308 (55%), Gaps = 19/308 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL A +V+ DVD + LA +PD+ + +LHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMD 119 GEDG ++ +L+LL++PY +G AS ++ K +K VV+ G+ + + + + Sbjct: 69 GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128 Query: 120 SQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +Q + + P V+KP +GGS+LG+ +++ +P ++ S + +G+ LIE+ V Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAMV--SCFAYGEVALIERAV 186 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG+EL V+ G ++L EI Y Y+ +Y+ + + PA++P + V Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVT--EGPYDYDARYNPGRTEYFSPARLPSSHAEAVA 244 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+A+G R ISR+D + + +LE+NV PGMT S+ P+ A G+S L Sbjct: 245 ATAIAAHEALGLRHISRTDLIL-QADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTL 303 Query: 289 LLWMVEDA 296 +V+ A Sbjct: 304 YRSVVDHA 311 >gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] Length = 361 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40 ++ GG+S E E+S S + AL D + + + +D+ Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 41 -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + +L+ ++ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS NS PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] Length = 332 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ S + S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S H++ D A+ +HG GE+G++Q +L+ +PY+ S +L AL+ DK + Sbjct: 68 SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SIL+ R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++DG E++ GV TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEV-VTSNEFFDYNAKYN-GQVQ 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA+I D K V + + GI R D++ D V LEIN PGMT Sbjct: 244 EITPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20] Length = 315 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + ++ + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 Y+ G EL V+ + + V Y ++ +Y+ S + +PA++ + ++V+ Sbjct: 186 YIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G S EL Sbjct: 246 TTAVTVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAKAEG-SLEEL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] Length = 350 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 150/336 (44%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52 + VL GG S+E EVS++S + + L + VS I V R ++ +K D Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDEL 64 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +HG++GEDG +Q +++L++P+ +L SA Sbjct: 65 VLDTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144 L MDK + + +P +++ + + S +KP GSS+G++ Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201 + ++ + + ++ + ++L+E+ + G EL VMG+ + + V +F+ Sbjct: 185 ETEEELEQAIQN--AFLYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY+ + + P + + + +RLA ++ + G SR D +++ E Sbjct: 243 YDAKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMFVR--DNELWVNE 300 Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 IN PG+TP S+FP + S E+ +++ A Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336 >gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191] gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191] Length = 353 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVS+ S L + V I + + Sbjct: 6 IAVVYGGKSVEHEVSVHSAADVCGILSK-KYNVINIFISKEGLWFAQEKCGPAQPSDINV 64 Query: 49 -----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + D+ F VLHG GEDG +Q + EL+E PY G++ASA+ M Sbjct: 65 TPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGM 124 Query: 92 DKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK SK + + GVP P I V + + P +KP+ GSS+GI +K Sbjct: 125 DKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGYPVFVKPVNLGSSIGITKVK 184 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA----SLDVTEIAVPKSDFY 200 ++ + + + +++ +LIE+ V E+ C V G+ S E+ +F+ Sbjct: 185 EEAFLEKAIEFALKFDND--ILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFF 242 Query: 201 SYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y KY N V PA + + K +Q+ + + + G +R DFL ++++ Sbjct: 243 DYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLL-GKDGQIYF 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PGM+ S+FP++ AG + ++L ++ A R Sbjct: 302 SEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRR 342 >gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803] gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803] Length = 326 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + + V+A Sbjct: 5 IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D FN +HG GE+GL+QA LEL+ IP T SAL+ +K V+ Sbjct: 65 TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + +N+ T + + P +K + GSS G+ +K + I Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEIISAAK- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 +++ D+ +IE ++DG E++ GV+ +L VTEI +P +F+ YE KY S Sbjct: 184 -TAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEI-IPDGEFFDYEAKYL-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + K+VQ +A + ++ + +G+SRS+F+F + ++E+N PG++ S Sbjct: 241 EITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFHE--GEPHFIEMNTNPGISQAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S ++L +E A Sbjct: 299 ILPQQAEKAGISLKDLFGSTIEAA 322 >gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 286 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 82/266 (30%), Positives = 142/266 (53%), Gaps = 12/266 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 R V A + D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK +K+V Sbjct: 6 RPVDTEQALAQIDVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRV 65 Query: 100 VSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + G+ V P + NR T + + P +KP GSS+G+ + + Sbjct: 66 LRDAGLAVAPFVCFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSADAFAAA 125 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKY-SSLN 210 L + S++H ++L+E + G E+ C V+G+A+ + V FYSYE KY S+ Sbjct: 126 LALALSYDH--KVLVEAAIVGREIECAVLGNATPQASVCGEVVVHDAFYSYETKYISAHG 183 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + V+PA I + +Q++A A+QA+ C G++R D ++ E+N PG T Sbjct: 184 ADIVIPADIYAHTQQRIQQIAVQAYQALDCAGMARVDVFL-CADGRIVINEVNTLPGFTR 242 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S++P++ +G +R L+ ++E A Sbjct: 243 ISMYPKLWQASGLDYRSLITQLIELA 268 >gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14] gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14] Length = 331 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + V +D+ D Sbjct: 8 IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +K D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+L+ R + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ + ++E ++DGIE++ G+ A TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMECSEAMVEGFMDGIEISQGIYKTADKTVVFPATEV-VTNNEFFDYNAKYN-GQVK 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269 + PA++ + ++V + + GI R D++ + K+ LEIN PGMT Sbjct: 244 EITPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 322 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQID--------------VDRSVGL 44 +A++ GG SSE EVSL S S + D + V+ I +D++ Sbjct: 4 IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63 Query: 45 VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 +A K D A+ +HG GE+G++Q +L+ +P++ +LASAL+ +K + Sbjct: 64 FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123 Query: 102 SCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + V S+L+ + + P +KP GGSS +K + + Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSKDMLQQAI--E 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHV 214 ++ D++++E +VDG E+TCG+ V V K++F+ Y KY+ S + Sbjct: 182 EAFAEADEVIVESFVDGTEVTCGMYKTKGKTVILPLTEVVSKNEFFDYNAKYN-NQSDEI 240 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I + + +++ ++ I +GI R+D++ +P R + LE+N PGMTP S Sbjct: 241 TPARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEPSGR-IVLLEVNTTPGMTPQSFL 299 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ AG E++ ++ED+ Sbjct: 300 PQQIRAAGMDIAEVMRDIIEDS 321 >gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] Length = 286 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 9/287 (3%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 +G+ + L+ +++ I + LV D+A LHG +GEDG +Q LE L Sbjct: 1 MTGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLG 60 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPL 133 +PYT SG+L+S + MDK SK+++ G+ I ++ +D + P V+KP Sbjct: 61 VPYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPN 120 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G+ ++ +++ L W +++IE+Y+ G E+TC ++ L + I Sbjct: 121 SGGSSVGVKIVYDKETLLASLEDVFKW--DAEIVIEKYIKGEEITCSILDGKLLPIISIQ 178 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 ++F+ Y KY + + + ++PL Y+ V A ++ + C +R D + Sbjct: 179 -HTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMI--K 234 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + +E+N PGMT S+ P+ A AG S+ +LL ++E + +R Sbjct: 235 DGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281 >gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14] gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14] Length = 331 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 146/325 (44%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG S+E EVSL S L+ G +++++ ++ G + A + Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ ++ +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NS 211 +++ + DQ+LIE+ + EL GD + E++ P FYSYE KYS+ ++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + D + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+ F E + ++ A Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKSA 329 >gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] Length = 397 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 155/366 (42%), Gaps = 74/366 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLK------ 50 +AV+ GG S E EVS+ + + L + V + +D+ VLA L+ Sbjct: 5 IAVIFGGRSVEHEVSIVTAQQIMYQLRRDLYDVMPLYIDKEGAWWTGDVLAKLESFKAAN 64 Query: 51 ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71 PD+A HG +GEDG +Q + Sbjct: 65 RNAALAQAARVIVVPTPGGGVIEDPQALRGLFRKPRRWTPDVAILATHGTYGEDGCLQGL 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122 LE+ IPYT G+L SA+ MDK+ K V + G+PV I ++R + Sbjct: 125 LEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNYIWIHRDEWHEHPDEVADRVER 184 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 + P +KP GSS+GI + + + ++ + +LLIEQ V E+ C V Sbjct: 185 ELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAA--GYDRRLLIEQGVVSPREINCSV 242 Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLN-----STHVLPAKIPLDIYKEVQRLAFL 233 + D + + E V F SYE KY N + +PA +P + + VQ LA Sbjct: 243 LADGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTGRRIPADLPDGVTEAVQELARR 302 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +AI RG++R DFL P ++ EIN PG + +G SF +LL ++ Sbjct: 303 AFRAIQARGVARVDFLLSP-DGSIYVNEINTIPGSLSFYL----WEPSGVSFPDLLDKLI 357 Query: 294 EDASCL 299 EDA Sbjct: 358 EDALAD 363 >gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] Length = 324 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 165/324 (50%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + ++ V+AH Sbjct: 5 IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +K D FN +HG GE+GL+QA LELL IP T + SAL+ +K V+ Sbjct: 65 TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + +N+ + + P +K + GSS GI +K+ + Sbjct: 125 KPYGIKSAKNYFLNKEDAINPDEIIKKVGLPCFVKANRAGSSFGITKVKQKNELYRAAQN 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+ +IE ++DG E++ GV+ +L VTEI V +++F+ YE KY S Sbjct: 185 --AFQEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEI-VSENEFFDYEAKYL-GKSQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I K+VQ +A L ++ + +G +RS+F+F + + ++E+N PG++ S Sbjct: 241 EITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIFH--NGEPHFIEMNTTPGLSQAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ AA AG S ++L +E + Sbjct: 299 ILPQQAAKAGISLQDLYGSAIEAS 322 >gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46] gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46] Length = 382 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S+E EVS+ S A AL+ + V+ I +D+ G Sbjct: 5 VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ VLHG GEDG VQ L+L +PY S Sbjct: 65 REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGS 137 G++ SA +MDK +K+++ G+P+ P ++ +T + L S +KP GS Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL-----DVTE 191 S+G+ + + D + ++ + +++LIE+ V E+ V+ A E Sbjct: 185 SVGVSRV--ADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVRVSPPGE 242 Query: 192 IAV-PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 IA FY Y+ KY + ++PA + + + + LA A +A+ C G++R D Sbjct: 243 IAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDLF 302 Query: 250 FDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DP +F E+N PG T +S++P++ AG + L+ ++ Sbjct: 303 LDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1] gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 367 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 58/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A+L GG S+E +VS +S +L+ + + V+ I + VLA Sbjct: 8 VAILFGGRSAEHDVSRASAANIFRSLDASRYAVTLIGITPEGRWVLADAVNARTAQALTV 67 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D+ F VLHG GEDG +Q LEL ++ Y Sbjct: 68 PPDGPQIVLLPAGQGRALVLGDGAAAPRELTFDVIFPVLHGPNGEDGTMQGALELADVAY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLIS-PPYVIKPLK 134 + ++ SA +MDK +K+++ G+P+ P + + D+ H + IKP Sbjct: 128 VGARVMGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAAAPVSYEDAVHAVGCSELFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DASLDVTE 191 GSS+GI + Q + + ++LIE+ + E+ C V+ D + +E Sbjct: 188 LGSSVGISKARTPQEFAAACDLALRF--DGKILIERCISPVREIECAVLEHADGEVKASE 245 Query: 192 ----IAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + FYSY KY+ + ++ +PA++ + + ++++A + C ++R Sbjct: 246 LGEIVPASSHGFYSYAAKYTDASGASLHVPAQVEPGLAQRIRKMATEVFGVLCCESLARV 305 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF +V+ E+N PG T +S++P+M G L+ ++ A Sbjct: 306 DFFVH--GEEVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDALIAHALAR 356 >gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 329 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG S+E EVSL S S LE F+V ++++ L Sbjct: 6 ILLLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTL 65 Query: 50 -------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 66 NSEVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDS--QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P P I ++ + Q L + +K + GSS+G + + + + Sbjct: 126 LSIPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQLQKAI-- 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL--N 210 + ++ + DQ+L+E+ V EL EI P+ FYSYE KYS+ + Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHS 243 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +T V + + D +Q+ + + + R +SR DF P V+ E+N PGMTP Sbjct: 244 TTDVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTPEGN-VYLNEVNTFPGMTP 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M ++G F E L V+ + Sbjct: 303 ISMFPKMVEHSGLKFSEFLADCVKSS 328 >gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 374 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 88/359 (24%), Positives = 158/359 (44%), Gaps = 65/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE E+S + + S ++ +++ + + R+ VL P Sbjct: 10 VAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRIDAGT 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q + E Sbjct: 70 RALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQGLFE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLIS 125 ++ + Y +G+ +S+ SMDK+ K ++ G+P + + + +D + Sbjct: 130 MMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVAELG 189 Query: 126 PPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +KP + GSS+GI ++ + + ++ H ++L+E V G E+ CGV+ Sbjct: 190 ATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGVLES 249 Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++++P DFY +E KY S +S + PA++P + ++ LA +A Sbjct: 250 EDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSSLTI-PAELPEEATARLRALAAEVFEA 308 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G++R DF + + E+N PG TP S FP+M A G + L+ M+ A Sbjct: 309 MGCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMISTA 366 >gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 338 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 145/334 (43%), Gaps = 42/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ G I+SE ++S++S + F + + + + Sbjct: 6 VALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSNKLE 65 Query: 49 ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L D+AF +LHG GE G VQ +L+ IP+T + Sbjct: 66 GHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L+SAL MDK + + + G+ + L+ + P ++KP + GSS G+ + Sbjct: 126 LSSALCMDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI--AVPKSDFYS 201 + + L ++ ++LIE Y+ G E+ G++ D L V+E+ + + Sbjct: 186 RNYDELLNACL--FAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFD 243 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ KY + + + P + KEVQRL LA + C SR DF ++F E Sbjct: 244 FQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFVTE-DHRIFLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S +P M AG S+ EL+ M+ED Sbjct: 303 VNTIPGFTSSSRYPGMLDRAGVSYPELITKMIED 336 >gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] Length = 315 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q IL L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + ++ + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ + + V Y ++ +Y+ S + +PA++ + ++V+ Sbjct: 186 YVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + A H +G +SR+D + D +++++NV PGMT S+ P A G S +L Sbjct: 246 KTAITVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAEAEG-SLDDL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9] gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9] Length = 330 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44 +L GG S+E EVSL S L++ G +++++ DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P I ++ + L + +K GSS+G + + + ++ Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDELAEAV--NN 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NST 212 ++ + +Q+LIE+ + EL GD + E+A P+ FYSYE KYS+ + T Sbjct: 186 AFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V + + + ++ A A + + +SR DF ++ EIN PGMTP+S Sbjct: 246 TVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP+M + G+SF + ++ A+ Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKTAA 329 >gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] Length = 364 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 160/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45 ++ GG+S E E+SL S S+L + V I VD+ G+ Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIKRH 66 Query: 46 ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ D+ F ++HG GEDG +Q +++++IP +GIL SA+ Sbjct: 67 TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +PV I + D + ++ P ++KP GSS+G Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197 I V I + ++ + +++E+++ E+ C V+G+ + + EI V Sbjct: 187 INVAYNVSQIEKYI--EEAFEYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244 Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS+ + +PA + + +++ AFL ++ + RG++R DFL + Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S+F +M + G S+ L+ ++ A Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346 >gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 315 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 18/313 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG AL G +V+ D D + L +PD A LHG Sbjct: 5 VVVLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GE+G +Q+ILE++ IPY + LS +K +K ++ G + ++ T Sbjct: 65 SRGENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRD 124 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP GGS+LG ++ +P L+ ++ +G+ ++EQ Sbjct: 125 LGAQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAALV--GAFAYGEIAVVEQ 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +++G EL V+ G +L EIA P S + YE +Y++ +T+ PA++ + Sbjct: 183 FIEGTELAITVVDRRDGPQALPAVEIA-PHSGVFDYESRYTAGLTTYYTPARLDEAVATA 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 LA AH+ +G R +SR+D + V +LE+NV PG+T S+ P AG S Sbjct: 242 AAELAIGAHRTLGLRDVSRTDAI-AGADGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLG 300 Query: 287 ELLLWMVEDASCL 299 EL +VE A Sbjct: 301 ELYAGLVERAVAR 313 >gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1] gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1] Length = 318 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 34/324 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE +SL +G + L + ++ + D SV + Sbjct: 1 MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q LELLEIP+T G+ +AL+ +K + G Sbjct: 61 DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N + I P +K K GSS G+ + + + + + Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFGVSKVHEISDLKNAIAIAL-- 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 D+++IE ++DG+E++ GV+ L +TEI V ++DF+ YE KY S + P Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEI-VSENDFFDYEAKYL-GKSQEITP 236 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A+I ++ +V ++A ++ + G SRS+F+F + + LE+N PGMT SI P+ Sbjct: 237 ARISPELSAKVAKVAKKIYEILKLEGFSRSEFIF--KDDEPYLLEVNTIPGMTEESILPQ 294 Query: 277 MAAYAGYSFRELLLWMVEDASCLR 300 A AG S L VE A + Sbjct: 295 QAKEAGISLEALFGNAVELALTKK 318 >gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] Length = 330 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 144/325 (44%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44 +L GG S+E EVSL S L+ G +++++ DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + ++ + L + IK GSS+G + + + ++ Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDELAEAV--NN 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NST 212 ++ + +Q+LIE+ + EL GD + E+A P+ FYSYE KYS+ + T Sbjct: 186 AFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V + + + ++ A A + + +SR DF ++ EIN PGMTP+S Sbjct: 246 TVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP+M + G+SF + ++ A+ Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKAAA 329 >gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] Length = 331 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 149/325 (45%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG S+E EVSL S L+ +G +++++ ++ G + A + Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ ++ S +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NS 211 +++ + DQ+LIE+ + EL GD + E++ P FYSYE KYS+ ++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G +F + + +++A Sbjct: 305 SMFPKMLEHNGQTFADFIEQAIKNA 329 >gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064] Length = 318 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 138/270 (51%), Gaps = 17/270 (6%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++ A + + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ Sbjct: 36 SPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIF 95 Query: 101 SSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 + G+P P++ V + + +++ P +KP GSS+GI + + Sbjct: 96 ADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL- 154 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS---DFYSYELKY 206 + ++ + ++++EQ V E+ GV+G+ + V +P+ FY Y+ KY Sbjct: 155 -ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKY 213 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 N+ ++P ++ +I ++++ A A + G+ R+DF ++F E+N P Sbjct: 214 QDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMP 272 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G TP S++P + G + L+ +V+ A Sbjct: 273 GFTPYSMYPLLWQETGLPYGALIERLVDLA 302 >gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 331 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 149/325 (45%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51 +L GG S+E EVSL S L+ G +++++ ++ G + + +P Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L L +P+ G AS +K+ +K + Sbjct: 68 VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + ++ + ++ +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL--NS 211 +++ + DQ+LIE+ + EL L +T E++ P FYSYE KYSS ++ Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+ F E + +++A Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329 >gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 335 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 88/313 (28%), Positives = 165/313 (52%), Gaps = 19/313 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G++V + DVD S+ + +PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE + +P+ S + + L+ +K +K ++ S GV + + + Sbjct: 67 GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + ++ + + +G +L++EQ + Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAMVDAFA--YGQRLMVEQRI 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ++ V+ G +L EI+ Y Y+ +Y++ + + +PA+ +I ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEIST-DGGRYDYDARYTTDETEYFVPARFSDEILADLQ 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRE 287 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF + Sbjct: 244 AAAVEAHTTLGLRDLSRIDFVVDDA-GTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQ 302 Query: 288 LLLWMVEDASCLR 300 L +++ + R Sbjct: 303 LCADIIDFVAEGR 315 >gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 315 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLRTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + ++ + + + ++ LIE+ Sbjct: 128 MGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ + + V Y ++ +Y+ S + +PA++ + + V+ Sbjct: 186 YVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIETVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G S EL Sbjct: 246 ATAVTVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAEAEG-SLEEL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] Length = 364 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45 ++ GG+S E E+SL S S+L + V + VD+ G+ Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66 Query: 46 ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ D+ F ++HG GEDG +Q +++++IP +GIL SA+ Sbjct: 67 TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +PV I + D + ++ P ++KP GSS+G Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197 I V I + ++ + +++E+++ E+ C V+G+ + + EI V Sbjct: 187 INVAYNVSQIEKYI--EEAFEYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244 Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS+ + +PA + + +++ AFL ++ + RG++R DFL + Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S+F +M + G S+ L+ ++ A Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346 >gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 365 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 151/329 (45%), Gaps = 31/329 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG+SSE +VSL+S + +A G +V +D + + Sbjct: 36 IAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPGTTAAWEKLR 95 Query: 51 -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 DLA ++HG GEDG++Q LE + + Y SG+L+SA+ +DK +K V + GV P Sbjct: 96 SCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAP 155 Query: 110 SILVNRFTMD-------------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + ++ D I P +KPL+GGSS GI + + ++ + Sbjct: 156 GLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLADAVKL 215 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV------PKSDFYSYELKYSSLN 210 ++ +LIE V G E+ GV+ V K +F+S E KYSS Sbjct: 216 AAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTE 275 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + ++PA I + ++ A A+GCRG++R DF D EIN PG T Sbjct: 276 TRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVD-DDGTATLNEINTLPGFTS 334 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S P + A AG ++ L+ ++E A Sbjct: 335 HSQVPRIWAAAGVNYEGLVAIIIETALAR 363 >gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] Length = 350 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52 + VL GG S+E EVS++S + + L + V+ I V R ++ +K D Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEEL 64 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +HG++GEDG +Q +++L++P+ +L SA Sbjct: 65 ILDTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144 L MDK + + +P +++ + + S +KP GSS+G++ Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201 + ++ + + ++ + ++L+E+ + G EL VMG+ + + V +F+ Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY+ + + P + + + + LA ++ + G SR D +++ E Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300 Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 IN PG+TP S+FP + S E+ +++ A Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336 >gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 327 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 94/328 (28%), Positives = 165/328 (50%), Gaps = 38/328 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG + E +SL SGK L F+ ++ + D Sbjct: 4 IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + ++ D FN +HG GEDGL+QA ELL IPYT + ++ +K ++ Sbjct: 64 SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ + + I P +KP + GSSLGI + ++ + + + Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEETDLFNAVKK 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++++IE +++G E++ GV L +TEI + ++DF+ +E KYS S Sbjct: 184 --AFKEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEI-ISQNDFFDFESKYS-GKSQ 239 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PAK+ I ++Q +A + + GISRS+++ ++ + ++LEIN PG++ S Sbjct: 240 EITPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSEES 297 Query: 273 IFPEMAAYAGYS----FRELLLWMVEDA 296 IFP+ AG S F+ + + +E A Sbjct: 298 IFPKQLKTAGISLSYFFKNCINYSIEKA 325 >gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] Length = 373 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHL------- 49 + ++ GG S E VS+ S L + ++V +DR L Sbjct: 8 VGLVFGGASDEHAVSIRSAITVVGGLREGENLLRYRVRPFYIDRRGRWWGPELAEAVLSS 67 Query: 50 -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG GEDG +Q + L+++P Sbjct: 68 AEPAPDEQLNETAADQPLGGAGFQGLPPEAAGVDVWFPVLHGPNGEDGTIQGLFALMQVP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 + SG+L SAL MDK K ++ G+P P V + + + P Sbjct: 128 FVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYAAVQAADLRHDPEGLLQRLERDLGYPCF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187 +KP GSS+GI S+ L +++ +L++EQ V EL C V+G + Sbjct: 188 VKPANMGSSVGISKASDRSSLLQGLELAAAL--DPRLVVEQGVTARELECAVLGQGAAAG 245 Query: 188 -----DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V +D+Y YE KY++ S+ V+PA++P + + ++ +A A A+ G Sbjct: 246 GGLKASVVGEIRFSADWYDYETKYTAGLSSTVIPAELPEAVSERLRAMALQACAAVATEG 305 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF +D +++++ EIN PG T S++P + A +G +L+ +VE A Sbjct: 306 LARVDFFYDEAAQRLWLNEINTLPGFTSQSMYPMLWAASGVPLVDLVHQLVESA 359 >gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] Length = 330 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------ 41 + +L GG SSE EVS+ S S L+ F V ++++ Sbjct: 6 ILLLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + + +K D +HG GE G +Q++LEL IPY G AS S +K+ SK Sbjct: 66 LNTDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + ++ + +K + GSS+G + + + L Sbjct: 126 ALGIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY--SSL 209 + ++ + DQ+L+E+ V EL EI P+ FYSYE KY SS Sbjct: 185 -NDAFGYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++T V + + ++ + + R +SR DF P +++ E+N PGMT Sbjct: 244 STTDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTP-EGEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + G+SF E L V+++ Sbjct: 303 PISMFPKMLEHNGHSFSEFLADCVKNS 329 >gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] Length = 332 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + ++ D A+ +HG GE+G++Q +L+++PY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SIL+ R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++DG+E++ GV TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYN-GQVE 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ + K V + + GI R D++ + LEIN PGMT Sbjct: 244 EITPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 304 VTSFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] Length = 330 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------ 41 + +L GG SSE EVSL S S LE F V ++++ Sbjct: 6 ILLLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + K D +HG GE G +Q++LEL IPY G AS S +K+ SK Sbjct: 66 LNTDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P I ++ + + L +K + GSS+G + + + L Sbjct: 126 ALGIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTELSQLQAALD 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 ++ + DQ+L+EQ V EL D L +T EI P+ FYSYE KYS+ Sbjct: 186 N--AFGYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYSTESH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++T V+ + + ++ + + R +SR DF P +++ E+N PGMT Sbjct: 244 STTKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTPS-GEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+SF L V+ + Sbjct: 303 PISMFPKMLENNGHSFAAFLANCVKTS 329 >gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187] gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187] Length = 330 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQID-----------------VDRSVGL 44 +L GG SE E+SL S S L++ A V++++ +DR + Sbjct: 8 LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q++LEL+ +PY G S L +K+ +K +S+ Sbjct: 68 ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127 Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + ++ + +K GSS+G + + + ++ Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVGCYKVTDAAKLSEAV--NA 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL--NST 212 ++ + DQ+L+E+ V EL V + L T EIA P FYSYE KYSS ++T Sbjct: 186 AFGYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++ + ++ A A +G + +SR DF ++ EIN PGMTP+S Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 +FP++ + G +F++ L ++ Sbjct: 305 MFPKLLEHHGDNFKQFLEGIIRS 327 >gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162] Length = 344 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 151/338 (44%), Gaps = 49/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER+VS+ SG SAL + +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62 Query: 39 ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 +S + LK D F LHG+ GEDG +QA+ +L+ I Sbjct: 63 VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135 YT +G L+SA++MDK +K + GVP + +R + + P V+K G Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ L ++ + +++++E++V+G E T V+ + V +I VP Sbjct: 183 GSSIGVYIVDNQADYTKAL--DGAFTYENEVVVEEFVEGTEYTVAVVDGKAYPVVQI-VP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY YE KY PA I ++ + +Q A + A+ R DF+ Sbjct: 240 VQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVTK-DE 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 K++ LE N PGMTP S+ P+ AA G + L ++ Sbjct: 299 KIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELI 336 >gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 333 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 155/312 (49%), Gaps = 19/312 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL+S + AL G V +DVD SV L PD F +HG+ Sbjct: 9 VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L +PY + + L+ DK +K V+ + GV SI ++ + Sbjct: 69 GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP +GGS+LG+ ++++ + L+ + + L+EQYV Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFA--YDTVALVEQYV 186 Query: 173 DGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 G EL V+ D +L EI P + Y +Y++ + + +PA+I Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIR-PVDGMFDYAARYTAGMTEYHVPARITETARDRA 245 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A AHQA+G R +SR+D + +V +LE NV PGMTP S+ P AA G Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTA-DDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGT 304 Query: 288 LLLWMVEDASCL 299 L ++ A+ Sbjct: 305 LCRDLLVRAATR 316 >gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 327 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 91/311 (29%), Positives = 149/311 (47%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 19 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG ++ +L+L +PY +S L+ DK +K V+ G+P + + Sbjct: 79 GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ ++P ++ + + L+E+Y+ Sbjct: 139 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDGPALPAAMV--GCFAYDSTALVERYL 196 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ++ V+ G +L EI VP++ Y Y +Y++ +T PA++ ++ + V Sbjct: 197 PGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLDTEVAEAVA 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G R +SR D + D + L +NV PGMT S+ P A A F + Sbjct: 256 TVAVAAHTALGLRDLSRVDLIVDA-DHQPHVLGVNVAPGMTETSLLPLAAQAASLDFGRM 314 Query: 289 LLWMVEDASCL 299 + +V A Sbjct: 315 IGTLVSRAVAR 325 >gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 335 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 57/333 (17%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------- 51 S A + L+ ++V + + V+ P Sbjct: 1 MSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRTMPEVQRREEIRPSLDP 60 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F VLHG FGEDG +Q + L +IP G+L+SA MDK Sbjct: 61 AHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKE 120 Query: 95 RSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K+++++ G+P+ +++ T + L+ P +KP +GGSS+GI + + + +P Sbjct: 121 FTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLP 180 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDASLDVTEIAV--PKSDFYSYE 203 + + H +++++E + G E+ CGV+ ASL + FY ++ Sbjct: 181 AAVDL--ARQHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDGEGGFYDFD 238 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + +I + VQ LA QA+ C G++R DF EIN Sbjct: 239 TKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVDFFVTA--NGPVLNEIN 296 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP+S++P+M A +G + ELL +V+ A Sbjct: 297 TMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 329 >gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] Length = 383 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 149/359 (41%), Gaps = 73/359 (20%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48 GG S E EVS+ +G + ++ + V R Sbjct: 2 FGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKDLLDISNYKDIPSLLK 61 Query: 49 --------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+ F HG GEDG +Q + +L Sbjct: 62 KCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLFQLAN 121 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 IPY SG++ SA MDK+ K + + +P+ + R + + + P Sbjct: 122 IPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESKLKYP 181 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG-DA 185 +KP GSS+GI K + + + ++ ++++E+ V D +E+ C VMG D Sbjct: 182 MFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR--KIIVEEAVKDPMEVNCSVMGIDR 239 Query: 186 SLDVT--EIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 L+V+ E+ VP +F SY+ KY ++T +PA IP + KE+Q LA Q Sbjct: 240 DLEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKVFQI 299 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C G++R DFL + + KV+ EIN PG S + G SF +L+ ++E A Sbjct: 300 LDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIEYA 354 >gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] Length = 308 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 +A+L GG SSER +SL SGK A++L+D G + ID + +A ++ D F LH Sbjct: 8 VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q IL+ ++ YT +G +S + K+ +K++ S +P P +N+ + Sbjct: 68 GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127 Query: 120 SQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q I P +IKP GSS+G+ + L++ S+ + ++IE+ Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVE--SFKYDRYIIIEK 185 Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G E T ++ L +I + + +SY KY ++ P +++ Sbjct: 186 YIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKF-VEYICPGGSSQSKEILIKK 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A++AIGC G+SR D + + LEIN PGMT S+ A +G SF +L+ Sbjct: 245 IALAAYKAIGCFGLSRVDLKQN-YDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFSKLV 303 Query: 290 LWMV 293 ++ Sbjct: 304 GKIL 307 >gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] Length = 332 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + ++ D A+ +HG GE+G++Q +L++IPY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SIL+ R + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D+++IE ++DG+E++ GV TE+ V ++F+ Y KY+ Sbjct: 186 RVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYN-GQVE 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ + K V + + GI R D++ + LEIN PGMT Sbjct: 244 EITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 304 VTSFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] Length = 329 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 35/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQ-----------------IDVDRSV 42 +AV MGG S E E+SL SG+ L ++ ++V + I +D+S Sbjct: 5 IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64 Query: 43 GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V+ + +P D FN +HG GEDGL Q L+ LEIP T +AL+ +K V Sbjct: 65 FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124 Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ +I +N+ + I P +K + GSS GI +K I L Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTAL- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 S+ D+++IE ++DG E++ GV+ +L VTEI + +++F+ +E KY S Sbjct: 184 -EHSFKEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEI-ISENEFFDFEAKYL-GKS 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA I K+V+ A + + +G++RS+F+F + + +LE N PG+T Sbjct: 241 KEITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIFH--NNEPHFLECNACPGLTEA 298 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 SI P+ A AG S ++L VE A Sbjct: 299 SILPQQAKAAGISLQDLFTNAVEVA 323 >gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 309 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 148/304 (48%), Gaps = 19/304 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V GG S EREVS SG+ A AL G V IDV V+ +PD F LHG Sbjct: 5 VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG VQ +LE+L++PYT S LASAL +DK K V GVP P + Sbjct: 65 GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 V+KP + GSS G+ V+++ + +L + ++ D++L+E+YV Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVL--GAMSYDDRVLLERYV 182 Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL V+G L V EI + ++YS++ Y S V A +P + V+ Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSE-VRLAGLPDAVDAHVR 241 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A A+ A GCR +R D + + LEIN PG+T P A +AG +F +L Sbjct: 242 AIAAEAYSAAGCRDFARVDIRL--EGDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQL 299 Query: 289 LLWM 292 + + Sbjct: 300 IERI 303 >gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] Length = 330 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 150/331 (45%), Gaps = 40/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41 + ++ GG SSE EVSL S S LE + F V ++++ Sbjct: 6 ILLICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A +K D +HG GE G +Q++LEL IPY G AS S +K+ SK Sbjct: 66 LNTDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + ++ + + +K + GSS+G + I L Sbjct: 126 ALGIPNTPYVFLSSNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQALD 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS--L 209 ++++ DQ+LIEQ V EL + L V+ EI P+ FY+YE KYSS Sbjct: 186 D--AFSYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++T V + + ++ + + R +SR DF P ++ E+N PGMT Sbjct: 244 STTDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTP-EGDIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P+S+FP+M + G+SF E L A C+R Sbjct: 303 PISMFPKMLEHNGHSFSEFL------ADCVR 327 >gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] Length = 326 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 146/321 (45%), Gaps = 30/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------QID-VDRS 41 + V+ GG SSE EVS+ SG S ++ + +D D S Sbjct: 5 VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDFS 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D A+ +HGN GE+G++Q L+++ +PY+ L A++ DK ++ Sbjct: 65 FEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNYLN 124 Query: 102 SCGVPVC-PSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+ P +LV D + ++ P IKP GSS G+ +K D Sbjct: 125 AFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVKTAADF--DAAVE 182 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHV 214 ++ ++L+E ++DGIE TCG+ V VPK +F+ YE KY + S + Sbjct: 183 GAFKMCREILVESFIDGIEFTCGLYKVGDKKVVMPVAEVVPKKEFFDYEAKYDAKMSDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +P + +I +Q +A + + C GI R D ++ LE+N PGMT S Sbjct: 243 IPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFVR--GEEIIMLEVNTTPGMTANSFV 300 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+M G R+++ ++E+ Sbjct: 301 PKMVRVMGLPLRDVITGIIEE 321 >gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] Length = 350 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52 + VL GG S+E EVS++S + + L + V+ I V R+ ++ +K D Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEEL 64 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +HG++GEDG +Q +++L++P+ +L SA Sbjct: 65 ILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144 L MDK + + +P +++ + + S +KP GSS+G++ Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201 + ++ + + ++ + ++L+E+ + G EL VMG+ + + V +F+ Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY+ + + P + + + + LA ++ + G SR D +++ E Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300 Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 IN PG+TP S+FP + S E+ ++ A Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] Length = 283 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 11/252 (4%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q LE+L +PY + IL+S+++MDK+ +K+V+ S G+ P + Sbjct: 23 VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVA 82 Query: 113 VNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 V + + ++ P +KP GSS+GI + + L ++ + ++ Sbjct: 83 VIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAEDLAGLRKALDL--AFKYDSRV 140 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 L+EQ V+ E+ G++G+A + T V FY Y+ KY T +PAKI I Sbjct: 141 LVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDESIM 200 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++ A A +AIG G+SR DF +F E+N PG T S++P + G + Sbjct: 201 DIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNTMPGFTQWSMYPLLWDNMGLA 259 Query: 285 FRELLLWMVEDA 296 + +L+ +V A Sbjct: 260 YPDLIEELVRLA 271 >gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] Length = 334 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 148/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] Length = 350 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52 + VL GG S+E EVS++S + + L + V+ I V R+ ++ +K D Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEEL 64 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +HG++GEDG +Q +++L++P+ +L SA Sbjct: 65 ILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144 L MDK + + +P +++ + + S +KP GSS+G++ Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201 + ++ + + ++ + ++L+E+ + G EL VMG+ + + V +F+ Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y+ KY+ + + P + + + + LA ++ + G SR D +++ E Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300 Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 IN PG+TP S+FP + S E+ ++ A Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] Length = 334 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] Length = 332 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 90/329 (27%), Positives = 149/329 (45%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAH------------- 48 +L GG S+E EVSL S S L V ++++ ++ G + Sbjct: 8 LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + D A +HG GE G +Q++ EL +PY AS + +K+ SK + Sbjct: 68 VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127 Query: 104 GVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + DS +K GSS+G + + ++ + + Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAV--A 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS-- 211 S++ + +Q+L+E+ V EL + + VT EIA P+ FY+YE KYS+ + Sbjct: 186 SAFGYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V P + + +++ A A + + +SR DF P V EIN PGMTP+ Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTP-EGDVLLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP++ + G++F E L SC+R Sbjct: 305 SMFPKLVEHNGHTFSEYLE------SCIR 327 >gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 314 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 157/310 (50%), Gaps = 18/310 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ +AL AG V + D D + L +PD LHG Sbjct: 6 VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ ILEL +P+ + A + DK +K +S G+ ++ T Sbjct: 66 GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V++ +P ++ + +GD +L E+ Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAMVGCLA--YGDTVLAER 183 Query: 171 YVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +V+G+E+ G G +L EI VP+S Y Y +Y++ + PA++ K Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEI-VPESGVYDYTSRYTAGLTDFHAPARLDEATAKA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 V LA AH+ +G R +SR+D + +P V +LE+NV PG+T S P AG S Sbjct: 243 VGELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLG 301 Query: 287 ELLLWMVEDA 296 E+ ++E A Sbjct: 302 EIYAALIERA 311 >gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] Length = 335 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S L+ F+V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T DS + +K + GSS+G + ++ I + Sbjct: 126 ALDIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S V+ A + + + +Q+ A + R +SR DF ++ E+N PGMT Sbjct: 244 SRTVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F L V Sbjct: 303 PISMFPKMLEHNGHRFSAFLAECV 326 >gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus] Length = 314 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 45/317 (14%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------------------------- 51 A+ + ++ I + +S + Sbjct: 1 AIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKKN 60 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + Sbjct: 61 HEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNA 120 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 G+ ++N+ + P +KP + GSS G+ + + D S+ + Sbjct: 121 GIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYD 178 Query: 164 DQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLP 216 ++LIEQ V G E+ C V+G+ A+L V E+ + + + E + S N+ +P Sbjct: 179 SKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP 238 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + +Q A ++A+GCRG++R D + ++ E+N PG T S +P Sbjct: 239 ADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPR 297 Query: 277 MAAYAGYSFRELLLWMV 293 M A AG + EL+ ++ Sbjct: 298 MMAAAGIALPELIDRLI 314 >gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 308 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 18/307 (5%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG G Sbjct: 2 LAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGEG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121 E+G VQ++L++ IPY + A + DK +K ++ G+ +++ T Sbjct: 62 ENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELGA 121 Query: 122 --------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P ++KP +GGS+LG V++ +P ++ + S +GD +L+E+Y++ Sbjct: 122 QSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS--YGDTVLVEKYIE 179 Query: 174 GIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+ GV+ G +L +I + Y Y +Y++ +T+ PA++ + Sbjct: 180 GTEVAIGVLDGPDGPEALPAVQIE-ATNGVYDYTARYTAGLTTYRTPAELSPETAAAAGD 238 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S ++ Sbjct: 239 LAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVF 297 Query: 290 LWMVEDA 296 +VE A Sbjct: 298 ATLVERA 304 >gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] Length = 345 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG SSE ++SL S + L + +K+ + +++ A K D Sbjct: 4 VYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLV 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + +HG +GEDG +QA+L+++ I Y +G+L+ Sbjct: 64 KEVKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLS 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLG 140 SA+ MDK+ S + + + N+ DS I P ++KP GSS+G Sbjct: 124 SAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198 + + + + + ++L+E+ ++G E+ V+G + DV+E A + Sbjct: 184 VSKVTNKNELLAA--GDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHT 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F Y+ KY S ++ LP + + +E Q A++A GC G +R D + Sbjct: 242 FLDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFL-GKDNNFY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + SF E+L +++D Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKD 338 >gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] Length = 326 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 15/261 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ VLHG +GEDG VQ + EL +IPY +G+LAS+ MDK +K+++++ G+PV P Sbjct: 69 EVDVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLTAEGLPVAP 128 Query: 110 SILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 +++ + D + + P +KP +GGSS+G+ + + ++ +++ Sbjct: 129 EVILKGRTELSADEKAQLGLPVFVKPARGGSSIGVSKVTDWAEFSRAV--EVAFESDNKV 186 Query: 167 LIEQYVDGIELTCGVMGDASLDVT--------EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 L+E + G E+ GV+ A V I + FY ++ KY + +PA Sbjct: 187 LVEPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEGVSAQIPAP 246 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + D+ + ++ A A +A+GC G+SR DF + EIN PG TP+S++P++ Sbjct: 247 LDPDLIQTLRETAVSAFRALGCEGLSRVDFFVTK--DAFYINEINTFPGFTPISMYPQVL 304 Query: 279 AYAGYSFRELLLWMVEDASCL 299 A G + LL ++E A Sbjct: 305 AATGVDYAALLDALIEGAMAR 325 >gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222] gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222] Length = 331 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRS 41 + +L GG SSE EVS+ S L A F V ++++ D++ Sbjct: 6 ILLLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINDQT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK Sbjct: 66 LRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + ++ T + + +K + GSS+G + + + + + Sbjct: 126 ALGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQAEELSEAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 + ++ DQ+LIE+ V EL D L ++ E+ P FYSYE KYS+ Sbjct: 185 -NKAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + + + + A + R +SR DF +++ E+N PGMT Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + G+ F + L V + Sbjct: 303 PISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4] gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4] Length = 329 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVD------------------RS 41 + +L GG S+E E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEIKSEGWITNQGELVYLDLNTKK 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +L+ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R + +K + GSS+G + + Q++ + Sbjct: 125 AIGIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYELKYSSLNS 211 + ++ + +Q+L+E+ V EL + L E+ P FYSY+ KYS+ + Sbjct: 184 -NDAFGYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYSNSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + + +++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 P+S+FP+M G+ F + L +E Sbjct: 302 PISMFPKMLQNNGHKFHQFLADCIET 327 >gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 329 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS S + ++ F + + R V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S + T + Q + P +KP GGSS+ I + + + Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +LIE+ + G E+TCG + +L VTE+ V F+ Y+ KY Sbjct: 186 V--ADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEV-VAHDTFFDYDAKY-YG 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I ++ + VQ + + C G R D++ LE+N PGMT Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326 >gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] Length = 334 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE E+SL S L F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLALTPQFNVIRVEMKKDGWFSEQGELVYLDTNSAT 65 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T DS + +K + GSS+G + +++ I + Sbjct: 126 ALDIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+E+ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S V+ A+ + + +Q+ A + R +SR DF +++ E+N PGMT Sbjct: 244 SRTVIEAEHLTEAQHNLIQQCAARVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHQFSEFLALCV 326 >gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] Length = 365 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 58/351 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVD---RSVGLVLAHLKPD-- 52 ++ GG S E +S+ S A+AL + VS +D R G LA D Sbjct: 2 GLVFGGASGEHAISIRSAATVAAALRRGENGRRYAVSCFYIDPQGRWWGPELAEQVLDQG 61 Query: 53 ----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + F VLHG GEDG +Q + L+++P+ SG+ Sbjct: 62 TPASPEQLASAPARPGFQGFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGV 121 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 L SA+ MDK K +++ +P P V +++ + + P +KP Sbjct: 122 LGSAVGMDKQAMKAALAAAELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + L +++ +L++EQ V EL C V G + + Sbjct: 182 GSSVGISKATDRDGLLAGLRSAAAL--DPRLVVEQGVTARELECAVRGGGPRPLEASVLG 239 Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250 + +D+Y Y KYS S V+PA +P I + + +A A +A+ G++R DF + Sbjct: 240 EIRYDADWYDYATKYSEGRSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYT 299 Query: 251 -----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +++ EIN PG T S++P + +G L+ ++ A Sbjct: 300 APAPGDGGEGRLWLNEINTLPGFTSQSMYPMLWEASGVPLDTLVDGLITAA 350 >gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 401 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 150/369 (40%), Gaps = 79/369 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + + GG S+E EVS+ S A + + + + I + + ++ Sbjct: 5 IGLFFGGNSTEHEVSIVSALQAAEFFDKSKYDIVPIYITKDNRFFVSEFTGKIEEYKNIK 64 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+AF ++HG EDG +Q +L +L Sbjct: 65 SLLEKSNQILLVKNGKKVDLVKYPFKVFGNKVYDYIDIAFPIVHGTNVEDGTLQGMLNML 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISP 126 IPY + +SA+ MDK K ++ +PV ++VN+F + + + Sbjct: 125 GIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCLVVNKFKYLENSDEVEENIKSKFNY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD- 184 P ++KP GSS+GI + + D S+ L + +++ +L++E + I E+ C V+GD Sbjct: 185 PVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY--KLIVEPAITSIKEVNCSVLGDM 242 Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNSTHVL---------------PAKIPLDIYKEV 227 S +E P + SY+ KY S + PA I + + Sbjct: 243 ESASASECEQPIGSGEILSYQDKYESSSGKKTGTSNAKGTMESLSRKLPADIDETTRETI 302 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +++A + +GC G++R DF+ D K++ EIN PG + G + Sbjct: 303 RKMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEINTIPGSLSFYL----WKAVGMDYPN 358 Query: 288 LLLWMVEDA 296 LL +++ A Sbjct: 359 LLEKLIQLA 367 >gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] Length = 329 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS S + ++ F + + R V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S + T + Q + P +KP GGSS+ I + + + Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +LIE+ + G E+TCG + +L VTE+ V F+ Y+ KY Sbjct: 186 V--ADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEV-VAHDTFFDYDAKY-YG 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I + + VQ + + C G R D++ LE+N PGMT Sbjct: 242 KSDEITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326 >gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] Length = 334 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315] gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315] Length = 321 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 11/271 (4%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 I++ + + + + + F VLHG GEDG +Q LE+L +PY + +++S+++MDK Sbjct: 42 ETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDK 101 Query: 94 MRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 + +K+V+ S G+P + + +++ ++ P +KP GSS+GI + Sbjct: 102 ITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQTK 161 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELK 205 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ K Sbjct: 162 VELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAK 219 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 220 YVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTM 278 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 279 PGFTQWSMYPLLWENMGLAYPDLIEELVTLA 309 >gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 344 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 46/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44 VLMGG S+E +VS+ SG A++ + + + +D+ Sbjct: 8 VLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKANFSEN 67 Query: 45 ----------------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ L D+AF LHG +GEDG +QA+LE IPYT G+LAS Sbjct: 68 YFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLAS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGI 141 AL+MDK++SK++ + G+P P ++ + + P VIK GGSS+GI Sbjct: 128 ALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDFY 200 + K + + ++LL E+++ G E +CG + G+ L TE+ + +++ Sbjct: 188 GIAKNLDEAGK--IAQDLFKDSNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYF 245 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +E KY+ V PA+ ++ +Q L AH A+G G SR+D ++F + Sbjct: 246 DFEAKYN-GECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRITK-DGELFAI 303 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E N PGMTP S+ P+ AA G ++ +L+ +++ + Sbjct: 304 ETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKS 339 >gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD 2210633] gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 329 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41 + +L GG SSE E+SL S L KV+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQ 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + R + +K + GSS+G + + Q+I + Sbjct: 125 ALDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ + DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + +++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] Length = 331 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE EVSL S L+ F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEIKSEGWCLDSGELVYLDINNQT 65 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK Sbjct: 66 LRGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + ++ T ++ + +K + GSS+G + + + + Sbjct: 126 ALGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 + ++ + DQ+L+E+ V EL D L ++ E+ P FYSYE KYS+ Sbjct: 185 -NKAFTYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + + + + + A + R +SR DF +++ E+N PGMT Sbjct: 244 SITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + G+ F + L V + Sbjct: 303 PISMFPKMVEHDGHKFAQFLENCVRTS 329 >gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] Length = 330 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 40/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41 + +L GG SSE EVSL S S LE + F V ++++ Sbjct: 6 ILLLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +K D +HG GE G +Q++LEL IPY G AS S +K+ SK Sbjct: 66 LNTDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P I ++ + +K + GSS+G + + + L Sbjct: 126 ALGIPNTPYIFLSENDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209 + ++ + DQ+L+EQ V EL L ++ E+ P+ FYSYE KYS S Sbjct: 185 -NDAFGYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + + + ++ + + R +SR DF P ++ E+N PGMT Sbjct: 244 SKTEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTPEGN-IYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P+S+FP+M G+ F E L A C+R Sbjct: 303 PISMFPKMLENNGHKFSEFL------ADCVR 327 >gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] Length = 325 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 138/263 (52%), Gaps = 15/263 (5%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 H+ D+ F VLHG +GEDG +Q + EL +PY +G+L+SA MDK +K+++++ G+P Sbjct: 67 EHVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLP 126 Query: 107 VCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 V +++ +Q L+ P +KP +GGSS+GI + + + + L + + + Sbjct: 127 VGKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCE--ARQYD 184 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSDFYSYELKYSSLNSTHVL 215 ++++E + G E+ CGV+ V V FY ++ KY + + ++ Sbjct: 185 TKVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMI 244 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + +Q LA A QA+ C G++R DF E+N PG TP+S++P Sbjct: 245 PAPLDDAATRLIQSLAREAFQALQCSGLARVDFFVTQAG--PVLNEVNTMPGFTPISMYP 302 Query: 276 EMAAYAGYSFRELLLWMVEDASC 298 ++ A +G + ELL ++ A Sbjct: 303 QVFAASGVPYAELLDTLIARALA 325 >gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] Length = 367 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 153/346 (44%), Gaps = 57/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L G S E E+S+ + S ++ + + I + + + Sbjct: 4 VGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNLE 63 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + D+ HG+ GEDG +Q +LE L +PYT Sbjct: 64 RLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYTG 123 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKG 135 G+ +S +MDK+ +K ++ +PV + N+ + + ++ P ++KP + Sbjct: 124 CGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMIVKPARL 183 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ + + + ++++ D++++E+++D EL C VMG ++ V+EI Sbjct: 184 GSSIGVKKVNDKCELEEAI--ETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIEEI 241 Query: 196 K--SDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 K DF+ Y KY S H++PA I ++ ++ +A A+ C G R DFL Sbjct: 242 KKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDFLL 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG + +G++F +++ M+ A Sbjct: 302 SK-DNKIYVNEVNSIPGALSYYL----WQMSGFTFSQVIDNMISIA 342 >gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 44/307 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL S + +A+ ++V + + R + Sbjct: 3 IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62 Query: 46 ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P IKP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199 + + + L + ++ + + ++EQ ++ E+ V+G+ + T V F Sbjct: 183 TKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y KY +PA+IP + + Q A A+ +G G+SR DF ++F Sbjct: 241 YDYNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299 Query: 260 LEINVQP 266 E+N P Sbjct: 300 NELNTIP 306 >gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32] gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32] Length = 331 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRS 41 + +L GG SSE EVS+ S L F V ++++ D++ Sbjct: 6 ILLLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEIKNEGWCLDSGELVYLDINDQT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK Sbjct: 66 LRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + ++ T + + +K + GSS+G + + + + + Sbjct: 126 ALGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 + ++ DQ+LIE+ V EL D L ++ E+ P FYSYE KYS+ Sbjct: 185 -NKAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + + + + A + R +SR DF +++ E+N PGMT Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + G+ F + L V + Sbjct: 303 PISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 265 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 11/266 (4%) Query: 37 DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 DV + L D FNVL H GED +VQ + E +PYT S +L SALSMDK+ Sbjct: 2 DVIGQLSKPLVAQHFDRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKI 61 Query: 95 RSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 R+KQV S G+ + + I P ++KP GSS+G+ + Sbjct: 62 RTKQVWLSLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQ 121 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ + LL+EQ ++G ELT V+GD +L I VPK +Y Y KY + Sbjct: 122 LEEAVTLAA--RYDGALLMEQLIEGDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAE 178 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ ++ P + + ++++LA A A GCRG R D + D S +++ LE+N PGMT Sbjct: 179 DTQYLCP-GLEGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMT 237 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S+ P+ A G F L+ ++E Sbjct: 238 SHSLVPKAARQLGIDFETLVWRVLEQ 263 >gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] Length = 329 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 145/326 (44%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S E EVS S + ++ + F + + V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65 Query: 46 ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +A+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S ++ T + + + P +KP GGSS+ I++ + Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209 ++ ++ +L+E+ + G E+TCG ++ D +L VTE+ V F+ Y+ KY Sbjct: 186 VVD--AYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEV-VAHDTFFDYDAKY-YG 241 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S + PA+I ++ + VQ + + C G R DF+ LE+N PGMT Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFII-EADGIPTLLEVNTTPGMT 300 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +L+ +++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326 >gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] Length = 337 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 37/327 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +A++ GG SSE +VSL S S ++ + V +++ D + Sbjct: 10 IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D A+ +HG GE+G++Q +L+ IPY+ S +L AL+ +K + Sbjct: 70 FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129 Query: 102 SC---GVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 S + + +ILV + + + P +KP GGSS G+ +K ++ Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL 209 + ++ D+++IE+ + G E+TCG + +TE+ V + +F+ Y+ KY+ Sbjct: 190 IEKAL--LESDEVMIEKMIVGTEITCGAYKKGNEIITFPITEV-VTEEEFFDYDAKYN-G 245 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPG 267 + PA++ + V + + + C GI R D++ ++ LEIN PG Sbjct: 246 KVDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEINTTPG 305 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294 MT S P+ AG E+L ++E Sbjct: 306 MTTTSFIPQQVRAAGLEIAEVLSDIIE 332 >gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 327 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 17 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 77 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 136 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 137 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 194 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 195 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 253 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 254 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 312 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 313 EVCSRLVDD 321 >gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 355 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 167/338 (49%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++M G+SSE+EVSL SG+ S ++ + I +D R V Sbjct: 11 VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70 Query: 43 GLVLAHL-----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 LA + DL F LHG +GEDG +Q +LELL+IPYT SG+LASAL M Sbjct: 71 EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGSSLGI 141 DK+ S++V+ G+ V ++ V R + I P V+KP + G S G+ Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCSTGV 190 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSD 198 + + L + ++ L+E+++DG+E+TCG++G +L +E + SD Sbjct: 191 KKVMSRAGLSDAL--NGAFLWDCTALVEEFIDGMEVTCGILGGNPPTALTPSE-TIATSD 247 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 S E K+ + PA++P + ++Q +A A +A+ +G +R D R V Sbjct: 248 VLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSAGR-VL 306 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N QPGMTP ++ AA +G + L+ ++E A Sbjct: 307 VLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] Length = 334 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + S + +K + GSS+G + + I + Sbjct: 126 ALGIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] Length = 324 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A++MGG SSE ++S+ SG L+ + ++ +D++ Sbjct: 5 IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L A + D FN +HG GE+G + A L+ + +T + AL+ +K + VV Sbjct: 65 SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ ++ +N+ + P IKP K GSS GI + ++I + Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAIAL 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ ++LIE ++ GIE++ GV+ L +TEI V ++DF+ Y+ KY+ S Sbjct: 185 --AYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEI-VSENDFFDYDAKYN-GKSK 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + K+V+ A ++ + G SRS+F+F ++ + ++LEIN+ PG+T S Sbjct: 241 EITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A AG S +L + A Sbjct: 299 ILPQQALAAGISLADLFDNAIVSA 322 >gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 315 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 160/305 (52%), Gaps = 15/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ A AL G +VS DVD + L L+PDL + +LHG Sbjct: 9 VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114 GEDG V+ +++LL + +G AS ++ K +K VV+ G+ + + Sbjct: 69 ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128 Query: 115 ----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 R + P V+KP +GGS+LG+ ++ +P ++ + + D LIE+ Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAMVDCFA--YSDTALIER 186 Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ V+ GD + + + + Y Y+ +Y+ + PA++ + + V Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G +SR+D + D ++LE+NV PGMT S+FP+ A AG++ +L Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDA-EGTPWFLEVNVAPGMTETSLFPQAAEGAGHNLGDL 305 Query: 289 LLWMV 293 +V Sbjct: 306 YRSLV 310 >gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 323 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 22/310 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E EVSL+S + AL D + V + + R +P Sbjct: 8 VAVVGGGQSCEHEVSLASAASVVGALTD-RYDVVPLTITRDGTWCDEVGRPVGLARAVQT 66 Query: 52 ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 ++HG GEDG + A+ EL +PY SG+ A AL+MDK +K V + GV Sbjct: 67 LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 P L+ + ++ P V+KP+ GSS G+ +++ + L ++ ++L Sbjct: 127 APGRLLT-AATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPAL--DAALRLDGRVL 183 Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +E V+G E+ V+ GD + + V + + KY + +PA +P + Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYG-GTADLRVPADVPEADAQ 242 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ A A+GC G++R DF E+N PG+T S P M A AG S+ Sbjct: 243 ALRDAAVRVFDALGCAGVARVDFFLTADG--PVLNEVNTTPGLTEHSQVPRMFAAAGLSY 300 Query: 286 RELLLWMVED 295 +LL +V D Sbjct: 301 PDLLDRLVRD 310 >gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 315 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + Sbjct: 68 GPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + ++ + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ + + V Y ++ +Y+ S + +PA++ + + V+ Sbjct: 186 YVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIEMVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G L Sbjct: 246 STAVTVHSTLGLGNLSRTDLILDE-EGTPWFIDVNVIPGMTETSLLPIAAKAEG-GLEGL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] Length = 345 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 22/281 (7%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V ++ + A + D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ D Sbjct: 62 VREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQD 121 Query: 93 KMRSKQVVSSCGVPVCPSILV------------NRFTMDSQHLISPPYVIKPLKGGSSLG 140 K K++ +S G+ V P +++ R D P +KP +GGSS+G Sbjct: 122 KEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVP 195 I + LD + + H + LIE V G E+ CGV+ AS+ V Sbjct: 182 ISKVDGFD--GLDEAIAEARRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVT 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y +E KY +++ ++PA + + EVQRLA A +A C G+ R+DF Sbjct: 240 DHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFFLT--DD 296 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG TP+S++P+M +G + EL+ +++ A Sbjct: 297 GFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQAA 337 >gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] Length = 331 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 145/328 (44%), Gaps = 36/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE EVSL S L A F V ++++ ++ G L Sbjct: 6 ILLLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINNQ 64 Query: 48 -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK Sbjct: 65 TLRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWY 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + ++ + + +K + GSS+G + + + + + Sbjct: 125 DALGIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAI 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209 + ++ DQ+L+E+ V EL D L ++ E+ P FYSYE KYSS Sbjct: 185 --NKAFTFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSSDS 242 Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + T + + + + + A + R +SR DF +++ E+N PGM Sbjct: 243 HSITEIEANNLTDEQLELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGM 301 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S+FP+M + G+ F + L V + Sbjct: 302 TPISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 315 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] Length = 321 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 153/321 (47%), Gaps = 34/321 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + + GG SSE E+SL S + G++V I V V Sbjct: 4 VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D+ +HGN GE+G +QA+L++ +PY +S LAS LS DK Q ++ Sbjct: 63 YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122 Query: 102 SCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 GVPV S+ +N + + P +KP GSS GI + K + + L + Sbjct: 123 RFGVPVAKSLFLNSPKKFTNQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALDK- 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ GD ++IE ++ G E+TCG+ G +L +TEI V ++DF+ YE KY S Sbjct: 182 -AFEEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEI-VTENDFFDYEAKYL-GQSQE 238 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP I + V + + + + I+R DF+ + + +E+N PG + S+ Sbjct: 239 ITPARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFSAASL 296 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 P+M A AG S + + E Sbjct: 297 VPQMLAEAGISIIDFWTEIFE 317 >gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] Length = 334 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] Length = 392 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 147/356 (41%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V GG S E E+S+ S A+ ++V + + + L+ Sbjct: 17 VVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFENLD 76 Query: 46 ----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F +LHG GEDG Q L L I Sbjct: 77 KVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLSTLHI 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131 PY +L A+ DK+ KQ++ G+PV P ++ + P ++K Sbjct: 137 PYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPLIVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE-LTCGVMGDA---SL 187 P GSS+G+ ++ + + +++ ++ + +++IE+ ++ ++ + C V+GD Sbjct: 197 PANLGSSIGVAKVENEVELHRAMIE--AYQYDGRVVIEKAIEHVQEINCAVLGDEQTCEA 254 Query: 188 DVTEIAVPKSDFYSYELKYSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V E + D SY KY N+ +PA+I ++ E+Q LA + + Sbjct: 255 SVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLCA 314 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL++ ++ ++ EIN PG S+ + + F +L+ +V+ A Sbjct: 315 SGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIA 366 >gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] Length = 328 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG + E +SL S + ++V +I + D Sbjct: 5 IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN+LHG+ GEDG + +++ IPYT L SA++M+K +K VV Sbjct: 65 SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124 Query: 101 SS-CGVPVCPSI-LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + SI L + +++ Q ++ P IKP GGSS+G+ +K + L Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEALD 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 + +++ Q+L+E++V G E + GV L TEI V +F+ +E KY + + Sbjct: 185 K--AFDEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEI-VSSKEFFDFEAKYVAGVT 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P ++ + V R+A ++ + C+G R D+ S K +++EIN PG T Sbjct: 242 NEITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTET 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S+ + G R+ ++E+ Sbjct: 302 SLISQQVRAYGMEVRDFYTQLIEE 325 >gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] Length = 334 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] Length = 334 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] Length = 334 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116] gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116] Length = 329 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV----LAHLKP---- 51 + +L GG SSE E+SL S L V+++++ + L +L P Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDPNQKK 64 Query: 52 ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R + +K + GSS+G + QS+ + Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ + +Q+L+E+ V EL + L +T E+ P FYSY+ KYS+ + Sbjct: 184 -NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + + ++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCINTA 328 >gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395] gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] Length = 329 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] Length = 334 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+LIEQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] Length = 334 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] Length = 342 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 165/307 (53%), Gaps = 19/307 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ + + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + +++ ++ ++ +G +L++EQ + Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQRI 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ++ V+ G +L E++ Y Y+ +Y++ + + +PA++ ++ ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVST-DRGRYDYDARYTTDETEYFVPARLSDELLADLQ 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF + Sbjct: 244 AAAVEAHTTLGLRDLSRMDFVVD-DEGTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQ 302 Query: 288 LLLWMVE 294 L +V+ Sbjct: 303 LCADIVD 309 >gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] Length = 315 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329] Length = 329 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE E+SL S L KV+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKK 64 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + R + +K + GSS+G + + Q+I + Sbjct: 125 ALDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ + DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + ++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] Length = 334 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S L F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSAS 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++LEL IPY G AS+ S +K+ SK Sbjct: 66 LNSEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + ++ IK + GSS+G + Q I + Sbjct: 126 ALGIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAID 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 ++ DQ+L+EQ V EL L +T EI P FYSYE KYS+ Sbjct: 186 D--AFTFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V I + ++R A + R ++R DF +++ E+N PGMT Sbjct: 244 SMTKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQ-GEIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + G+SF L V+ + Sbjct: 303 PISMFPKMLEHHGHSFSVFLADCVQRS 329 >gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 382 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 154/343 (44%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S A++ + V+ + + ++ A Sbjct: 7 IAMLFGGNSSEHDVSKRSAHNIYDAMDKEKYNVTVFLISKDGIMINAEDSWRVFEGEDED 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D + V+HGN GEDG +QA+ LL+ PY G Sbjct: 67 EIVAAAKEKMDLSNPLAPIAVLGEMANIDFFYPVVHGNLGEDGTLQALFRLLKKPYLGPG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGG 136 I ASA+S DK +K++++ GV +L+ + + L S +K G Sbjct: 127 IAASAMSFDKDLTKRILNQAGVRNTNYVLLTDQNYQDYTYDELVKELDSEVLFVKAASQG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE---I 192 SS+G+ + + L S +++ ++L+E +D E+ ++G+ + + I Sbjct: 187 SSVGVSRVTNEDEYKAALKDSFQYDY--KILVEGALDKPREVFISILGNENPRASRLGGI 244 Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P+ D +Y Y K+ + LP ++ + E+ +A A++A+G G++R DF+ Sbjct: 245 VLPEEDVWYDYNNKFVDASGMVFELPVELDQALTDEITDMALRAYKALGLVGLTRMDFMI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 D + + E N PG T +S++P+M +G S+ L+ ++ Sbjct: 305 DK-NGVPYLGEPNTLPGFTNISLYPQMWEVSGISYTHLIDELI 346 >gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str. N16961] gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236] gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236] gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] Length = 334 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L+ V Sbjct: 303 PISMFPKMLEHNGHRFSEFLVQCV 326 >gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3] Length = 315 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 384 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 +AV GG S E E+S+ S + +AL++ +++ + + + Sbjct: 5 IAVAFGGRSVEHEISVLSAQQVMAALDEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64 Query: 44 --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L + DL F VLHG GEDG Q L+ + I Sbjct: 65 EFIADHTSVALIRRDAHTYLIPSRRKLFARDKEVDLVFPVLHGTNGEDGTFQGYLKTIGI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131 PY +LA A+ DK+ KQV+ G+ V P + + + P +IK Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL--- 187 P GSS+GI V D + ++++ ++H +++IE+ ++ E+ V+GD Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH--KVVIEKVIEPLREINASVLGDEDGCRC 242 Query: 188 DVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 E V + + SY+ KY L+++ LPA++ + +EV+ +A A +A+ Sbjct: 243 STLEEVVKQDEILSYDNKYSGQGKSKGMLSTSRKLPAELSDEQAEEVRTMAMDAFRALNA 302 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DFL S ++ EIN PG + G SF LL ++ A Sbjct: 303 AGVVRIDFLMHADSSALYVNEINTIPGSLSFYL----WEKEGLSFPALLDELISLA 354 >gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 165/307 (53%), Gaps = 19/307 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ + + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + +++ ++ + + +G +L++EQ + Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVDAFA--YGQRLMVEQRI 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 DG ++ V+ G +L E++ Y Y+ +Y++ + + +PA++ ++ ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVST-DRGRYDYDARYTTDETEYFVPARLSDELLADLQ 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF + Sbjct: 244 AAAVEAHTTLGLRDLSRMDFVVD-DEGTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQ 302 Query: 288 LLLWMVE 294 L +V+ Sbjct: 303 LCADIVD 309 >gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2] gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1] Length = 315 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] Length = 329 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41 + +L GG SSE E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R ++ +K + GSS+G + + + + Sbjct: 125 AIGIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDKLSNAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTQAQLDAIQHASERVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 404 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 158/367 (43%), Gaps = 77/367 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG+S E EVS+ S ++++ +++ + + + Sbjct: 12 VAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYKNLK 71 Query: 45 -VLAHLK-----------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 +LA + D+AF ++HG F EDG++Q LEL Sbjct: 72 GLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGYLEL 131 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------- 125 L +PY +++S+ MDK+ K V G+P+ + ++ D L+ Sbjct: 132 LGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEGKLQ 191 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P ++KP GSS+GI + + +S + ++++IE+ V E+ C V+GD Sbjct: 192 YPVIVKPANLGSSVGISKAANVDELEEAVELASQFA--NKIVIEKMVQNMTEINCSVLGD 249 Query: 185 ---ASLDVTEIAVPKSDFYSYELKYS------------SLNSTHVLPAKIPLDIYKEVQR 229 A V E + + SYE KY+ ++ ++PA I + KE+Q Sbjct: 250 YEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQE 309 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A Q +GC G+SR DFL D + VF EIN PG + G ++EL Sbjct: 310 LAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPGSLSFYL----WEPTGKPYKELT 365 Query: 290 LWMVEDA 296 +++ A Sbjct: 366 NDLIQLA 372 >gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] Length = 334 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T DS + +K + GSS+G + ++ I Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--A 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KY +S Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T + + + + +Q+ A + R +SR DF +++ E+N PGMT Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] Length = 334 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T DS + +K + GSS+G + ++ I Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--A 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KY +S Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T + + + + +Q+ A + R +SR DF ++ E+N PGMT Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] Length = 334 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 96/332 (28%), Positives = 148/332 (44%), Gaps = 42/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE EVSL S L F V ++++ + Sbjct: 6 ILLLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSAT 65 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 66 LNGEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + ++ + T D+ IK + GSS+G + K + Sbjct: 126 ALGIPNTPYLFLSENNAQALKNTQDAFAKWGS-LFIKAARQGSSVGCYKVTK--EDQIAA 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210 +++++ +Q+L+EQ V EL + L +T EI P+ FYSYE KYS+ + Sbjct: 183 AIDAAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDS 242 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V + + + ++A + R +SR DF P V+ E+N PGM Sbjct: 243 HSRTEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTP-EGHVYLNEVNTFPGM 301 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 TP+S+FP+M A G+ F E L A C+R Sbjct: 302 TPISMFPKMLANNGHQFDEFL------ADCVR 327 >gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 275 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 D + P +KP GSS+ ++ +K ++P L +++ H +++E+ ++ Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T + GD L + +I VP +FY Y KY + ++ +++P +P E++R+A Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARR 248 Query: 234 AHQAIGCRGIS-RS 246 A +GC R Sbjct: 249 AFDVLGCTDWGERI 262 >gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] Length = 315 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPAGISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] Length = 344 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 52/343 (15%) Query: 4 LMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLV------------LA 47 + GG S E +++ S AL F V +DR+ +A Sbjct: 2 VFGGASGEHTIAIRSATTVIQALRSGRNRERFDVVPFYIDRAGRWWPAVVAESVLQNGVA 61 Query: 48 HLKPD---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D + + VLHG GEDG VQ + L+ P+ +G+L Sbjct: 62 AEEADLPQPLPAPGFSQLPAGSETVEIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLG 121 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135 SA+ MDK+ K ++ G+ + ++ ++++ + + P +KP Sbjct: 122 SAMGMDKLAMKAAFAAAGLAQVAYVGLDASSLNNAATRATLLERIETELGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ +H +L++EQ V EL C V+G L + + Sbjct: 182 GSSVGISKVRNRAELERGLAVAAELDH--RLVVEQGVQARELECAVLGVRQLKASVVGEI 239 Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y Y+ KYS S ++PA I +VQ +A A + +G G +R DF +D Sbjct: 240 RFDADWYDYKTKYSDGLSHTLIPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDAT 299 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ +VE A Sbjct: 300 QERLWINEVNTLPGFTSQSMYPMLWEASGLPLEDLVAQLVESA 342 >gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862] Length = 382 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 153/343 (44%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+ GG SSE +VS S + A++ + V+ + + ++ A Sbjct: 7 IAMFFGGNSSEHDVSKRSARNIYDAMDKEKYNVTVFLISKDGIMINAADSKRVFDGEDED 66 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + DL + V+HGN GEDG +QA+ LL+ PY G Sbjct: 67 TIVAEAKSKMDLKNPLAPIAVLGEMSEIDLFYPVVHGNLGEDGTLQALFRLLQKPYIGPG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIKPLKGG 136 ASA+S DK +K++++ G+ +L+ + L + +K K G Sbjct: 127 TAASAMSFDKDLTKRILNQAGIRNTKYVLLTDQNFQDYTYEGLVKELGTEVLFVKAAKQG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE---I 192 SS+GI + + + +++ ++L+E + E+ ++G+ + I Sbjct: 187 SSVGISRVTNAAEFEAGVKDALQYDY--KVLVEAALTKPREVFISILGNEQPRASRLGGI 244 Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P+ D +Y Y K+ + LP ++ D+ KE+ +A A++A+G G++R DF+ Sbjct: 245 VLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALNAYKALGLVGLTRMDFMI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 D + E N PG T +S++P+M +G S+ L+ ++ Sbjct: 305 DA-DGTPYLGEPNTLPGFTNISLYPQMWEVSGISYTNLIDEII 346 >gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] Length = 334 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T DS + +K + GSS+G + ++ I Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--A 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KY +S Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T + + + + +Q+ A + R +SR DF ++ E+N PGMT Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 314 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 22/311 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL+ F + + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GE+G VQ +LE+L +P+ +G + DK +K +V + G +++ T Sbjct: 66 GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGFVTPGWVVLPHSTFRE 125 Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+ + P ++KP +GGS+LG V+++ +P ++ + +GD +L E+ Sbjct: 126 LGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 +VDG+E+ V+ G +L EI VP+S Y Y +Y++ + PA++ K Sbjct: 184 FVDGVEVAVTVIEGEDGPEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARLDDAAAKA 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS-- 284 V LA AH+ +G R ISR+D V +LE+N PG+T S P AG S Sbjct: 243 VAELAVAAHRVLGLRDISRTDA-VVMADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSLG 301 Query: 285 --FRELLLWMV 293 F EL+ + Sbjct: 302 AVFGELIGRAI 312 >gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] Length = 359 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 152/352 (43%), Gaps = 59/352 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG SSE +VSL S L ++ + + R +L Sbjct: 7 VALLFGGTSSEHDVSLRSAANVID-LLSERVDLTLVGITRGGSWLLYGGDATAIADDSWQ 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L D+ F VLHG GEDG+ Q +LE +PY Sbjct: 66 GHDTTPVCAVPGDGGGLFAVEGGSPVRLPIDVVFPVLHGQGGEDGVTQGLLESCRLPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGG 136 G+L+SAL DK + ++V++ G+ +V+ + P +KP +GG Sbjct: 126 CGVLSSALCTDKDAAHRIVAAAGIRSPRCEVVHPGDGATRIAEVAAACGYPLFVKPARGG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTE 191 SS G+ ++ + + D ++ + +++ +E+ + G E+ C +MG A+ + V E Sbjct: 186 SSYGVSKVEGPEQL--DEALGLAFGYDEKVAVEEAIVGTEVGCAIMGGAAGELAMGLVDE 243 Query: 192 IAVPKSDFYSYELKYSSL------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 V F+ +S NS+ PA +P ++ + V+ +A+GC G++R Sbjct: 244 TVVSDGGFFHIHQDHSEGADASTRNSSTRCPALLPPEVMERVRETGTAVWRALGCSGLAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 D +V + E+N PG+T S FP M A AG E+L +V A+ Sbjct: 304 VDLFVTER-GEVVFNEVNTMPGLTSYSRFPAMMAAAGADMGEVLERLVRSAA 354 >gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 352 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + +++GG+SSEREVSL+SG+ L+ ++ + +D R + Sbjct: 7 VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66 Query: 43 GLVLA-----------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 L + D AF LHG +G+DG +Q +LELL IPYT G++ASAL M Sbjct: 67 TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGII 142 DK ++++ + GV V S+LV I P KP++ GSS+G+ Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSD 198 V++ + + + + W+ +L+E+Y++G E +C V+ + L++TEI P+S+ Sbjct: 187 VVRDEADLERGMEDALKWDRA--VLVEEYLEGREFSCIVLEEEGQFHPLELTEIH-PQSE 243 Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256 F++Y+ KY P K IP D+ ++++ A +A+G R R D F+ + + Sbjct: 244 FFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGR 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + N GM P S F E AA AG ++ ++E+A Sbjct: 302 ILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] Length = 315 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++ G EL G++ G L EI P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +A + + + GISR D + D R VF LE PGMT S+ P AG Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300 Query: 287 ELLLWMVED 295 E+ +V+D Sbjct: 301 EVCSRLVDD 309 >gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 384 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 150/356 (42%), Gaps = 66/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 +AV GG S E E+S+ S + +A+ + +++ + + + Sbjct: 5 IAVAFGGRSVEHEISVLSAQQVMAAMNEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64 Query: 44 --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L + DL F VLHG GEDG Q L+ L + Sbjct: 65 EFIADHDSVSLIRRDAHTYLIPSRRRLFAKEREVDLVFPVLHGTNGEDGTFQGYLKTLGV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131 PY +LA A+ DK+ KQV+ G+ V P + + + P +IK Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL--- 187 P GSS+GI V D + ++++ ++H +++IE+ ++ E+ V+GD Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH--KVVIEKVIEPLREINASVLGDEDGCRC 242 Query: 188 DVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 E + + + SY+ KY ++++ LPA++ + +EVQR+A +++ Sbjct: 243 STLEEVIKQDEILSYQDKYHGQGKSKGMVSTSRKLPAELTEEQTEEVQRMAMDTFRSLNA 302 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DFL S +++ EIN PG + G SF +L ++ A Sbjct: 303 AGVVRIDFLMQQDSGELYVNEINTIPGSLSFYL----WEQEGLSFSAMLDELIALA 354 >gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] Length = 329 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 142/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQKK 64 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R + +K + GSS+G + + QS+ + Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ + +Q+L+E+ V EL + L +T E+ P FYSY+ KYS+ + Sbjct: 184 -NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + ++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCINTA 328 >gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 345 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA 54 + +L GG SSE +++L S ++ L + + + + +D+ + + + DL Sbjct: 4 VYILCGGPSSEHDIALRSALNISNNLNENKYNIKLVYIDKKGAFSEPFEKIETNDEFDLV 63 Query: 55 ----------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 V+HG +GEDG +QA L++ I Y +G+L+ Sbjct: 64 RDIKESKTKSISNFLDIISKEDLTNTIILPVVHGTYGEDGTIQAFLDVAGISYIGNGLLS 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLG 140 SA+ MDK+ S + + + N+ +D I P ++KP GSS+G Sbjct: 124 SAICMDKVTSNDIFEKNKLRQAKYLYTNKEGLDDNFLDKCIEEIGLPLIVKPSANGSSVG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198 + + + + L++ + ++L+E+ ++G E+ V+GD + DV++ A + Sbjct: 184 VNKVTTRKELLDSGLEAL--KYDKKVLVEELIEGQEIEFAVVGDMNPDVSKPAAYISDHT 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F Y+ KY S ++ LP K+ D KE Q + A GC G +R D + + Sbjct: 242 FLDYDAKYFSKSTKESLPYKLDEDKLKEAQEFVKKCYVACGCEGFARVDIFY-ANDGNFY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + SF ELL ++ED Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYDKSFSELLDILIED 338 >gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] Length = 352 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA-- 54 +L GG SSE +++L S + L +K+ + VD+ + + + DL Sbjct: 10 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69 Query: 55 --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 70 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G+ Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 189 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + + + + +++L+E+ + G E+ V+G+ L ++ F Sbjct: 190 KAENIEELLK--FGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHTFL 247 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D K + Sbjct: 248 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 305 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F E+L ++E+ Sbjct: 306 EINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEE 341 >gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] Length = 334 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SSE E+SL S LE F V ++++ + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65 Query: 50 --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + + T DS + +K + GSS+G + ++ I Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--A 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209 +++ +Q+L+E+ V EL + L ++ EI P+ FYSYE KY +S Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T + + + + +Q+ A + R +SR DF ++ E+N PGMT Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P+S+FP+M + G+ F E L V Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326 >gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] Length = 330 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S EREVSL S ++ F + + R + V Sbjct: 8 IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67 Query: 46 ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D AF +HG GE+GL+Q ++LEIPY G+L +L+ DK +S Sbjct: 68 FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127 Query: 102 SCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+ + S + + I P +KP GGSS+ + + + Sbjct: 128 AFGIRIAASERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQL--AVAIQ 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++L+E+ ++G E+T G L +TE+ + K +F+ ++ KY NS Sbjct: 186 KAFEEAPEVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAKY-HGNSDE 244 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + +E+Q L + +GI R D++ K LE+N PGMT S Sbjct: 245 ITPARISEKLTQELQELTSRIALLLHAQGIIRVDYII-EADGKPTLLEVNTTPGMTEASF 303 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG + ++ D Sbjct: 304 IPQEIRAAGLELSHIFTAIIND 325 >gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] Length = 327 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 32/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AVLMGG SSE +SL+SG AL+ + V I + D Sbjct: 8 IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + PD FN +HG GEDG + A ELL IP T SG +ALS +K V+ Sbjct: 68 SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV S N+ + + P +KP + GSS GI + ++ L Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ +++IE + G E++ G G+ + V ++DF+ YE KY S Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEIVSENDFFDYEAKYE-GKSQE 244 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++V+ + + +G+ RS+F+ +++EIN PG++ SI Sbjct: 245 ITPARISESDTQKVKAETKRIYNLLKMKGVCRSEFII--QDGVPYFIEINTTPGLSSESI 302 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 P+ AG E +++ Sbjct: 303 IPKQVKDAGMDLGEFFGELID 323 >gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ] Length = 329 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49 + +L GG SE EVSL S LE + V ++++ + V H Sbjct: 4 ILLLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGE 63 Query: 50 ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D A +HG GE+G++Q+I EL+ +PY S +K+ +K Sbjct: 64 LYYPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLW 123 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + + VP P I ++ + +S IK GSS+G + + + Sbjct: 124 LDALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLEST 183 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209 +L S++ + +LIE+ + EL + V EI P FY Y+ KYS+ Sbjct: 184 IL--SAFKFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPD-GFYDYDQKYSND 240 Query: 210 NS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 ++ T V + + +++ + A + + R +SR DF KV+ EIN PG Sbjct: 241 SATKTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTE-EGKVYLNEINTFPG 299 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 MT +S+FP+M G F E L ++E+++ Sbjct: 300 MTSISMFPKMMENHGVKFSEYLRKIIEEST 329 >gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 350 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E E+SL S + +A++ + + I V+++ + + Sbjct: 5 VAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKYNIN 64 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 LK D+ F++LHG+ GE+G Q + + P Sbjct: 65 YIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNTIYTP 124 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPL 133 + S +L+S++ MDK SK+++S+ G+ V PSI + + + I P IKP Sbjct: 125 FVGSNVLSSSICMDKDISKRILSTFGISVVPSITLYYENYKKKINKIINNIKFPCCIKPS 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS G+ V I L ++ + ++LIE ++ G E+ GV+G+ ++ + Sbjct: 185 NQGSSFGVNVANDF--ISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNVISSVCG 242 Query: 194 VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 K FY Y+ KY S + ++PAKI +I +++++A LA ++ C ++R DF Sbjct: 243 EIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVDFFLT 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++K+F EIN PG T SI+P++ + +G F+ L+ ++ Sbjct: 303 K-NKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 326 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL G +V DVD ++ L P + F VLHG Sbjct: 19 VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL+ +PY + L+ K +K ++++ GV V + + Sbjct: 79 GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+ G + Q + L+ S + + D L+E+ V Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAALV--SCFAYSDSALVEEQV 196 Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL GV+ +L EI VP Y Y +Y++ + PA++ E Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEI-VPDGGVYDYAARYTAGRTEFFCPARLDPATVAEAT 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH+ +G R +SR+D + +V +LE NV PG+T S FP AA AG F Sbjct: 256 EVALTAHRVLGLRDLSRTDVIV-GTDGRVTFLETNVAPGLTETSTFPMGAAAAGLDFAVA 314 Query: 289 LLWMVEDA 296 + A Sbjct: 315 CRELAHQA 322 >gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83] gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83] Length = 330 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL------------EDAGFKV-------SQID-VDR 40 +AV+ GG S E VSL S S L E + V +D D Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S G+ + S+ + D + P +KP GGSS+ + + + + Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIE 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 Q +++ G++++IE+ + G E+TCG +L VTE+ V ++F+ ++ KY+ Sbjct: 186 Q--AFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYN-GAV 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + + +Q + ++ + RGI R D++ LE+N PGMTP Sbjct: 242 EEITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPT 300 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L ++ D Sbjct: 301 SFIPQQVRAAGMDMKEVLCTIIRD 324 >gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 348 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA-- 54 +L GG SSE +++L S + L +K+ + VD+ + + + DL Sbjct: 6 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65 Query: 55 --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G+ Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + + + + +++L+E+ + G E+ ++G+ L ++ F Sbjct: 186 KAENIKELLK--FGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHTFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D K + Sbjct: 244 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 301 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F E+L ++E+ Sbjct: 302 EINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEE 337 >gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] Length = 329 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNTKK 64 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R + +K + GSS+G + + +++ + Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ +Q+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + + + ++ + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCIHTA 328 >gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218] Length = 334 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 42/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47 + +L GG SSE EVSL S L F V ++++ + Sbjct: 6 ILLLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSAT 65 Query: 48 ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 66 LNGEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + +P P + ++ + T D+ IK + GSS+G + K + Sbjct: 126 ALDIPNTPYLFLSENNAQALKNTQDAFAKWGS-LFIKAARQGSSVGCYKVTK--EDQIAA 182 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210 +++++ +Q+L+EQ V EL + L +T EI P+ FYSYE KYS+ + Sbjct: 183 AIDAAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDS 242 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V + + + ++A + R +SR DF P V+ E+N PGM Sbjct: 243 HSRTEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTP-EGHVYLNEVNTFPGM 301 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 TP+S+FP+M G+ F E L A C+R Sbjct: 302 TPISMFPKMLENNGHQFDEFL------ADCVR 327 >gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] Length = 322 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 153/304 (50%), Gaps = 16/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55 +AVL GG + EREVSL SGK AL E+ IDV + L + + Sbjct: 20 IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112 N+LHG GEDG +Q +LE L I YT IL SA+ M+K+ +K++ S V +L Sbjct: 80 NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 V S ++ P +IKP+ GSS+G+ +IK + D + + L E Y+ Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEF--DNTIKKIEDINNYFL-EPYI 196 Query: 173 DGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+T G++ + + K++ Y Y+ KY+ + +PAKI DI K+V Sbjct: 197 KGKEITVGLVKEEDDIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVIE 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ +GC G+SR D + + +V+ +E+N Q GMT S P MA G F +L Sbjct: 257 TCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADLA 314 Query: 290 LWMV 293 L+++ Sbjct: 315 LYIL 318 >gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] Length = 277 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 7/246 (2%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L D F LHG GE+G +QA ++ I Y+ S S L+MDK +KQ++ +P Sbjct: 31 LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTP 90 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + + S P V+KP+ GSS+G+ +++ + L ++ + +++I Sbjct: 91 KWQI---WEQGQEVYYSTPCVVKPIDNGSSIGVEIVENKEQFFKALKKAE--KYNSKVMI 145 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 EQ ++G E + GV+GD L EI +P+ FY+YE KY + + PA I D+ + Sbjct: 146 EQKIEGREFSVGVLGDNVLPAIEI-IPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + L ++ +G SR D++ ++ +E N PGMTP S+ P+ A G SF EL Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTK-ELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263 Query: 289 LLWMVE 294 +VE Sbjct: 264 CETIVE 269 >gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 236 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 12/235 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + G E T ++G+ L I P FY YE KY S + + PA + Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAA 236 >gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 313 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL DAG + DVD + L +PD+ + +LHG+ Sbjct: 7 VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL+ + +G S ++ K +K V++ GV S + + Sbjct: 67 GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGS+LG+ ++ +++P ++ S +++GD LIEQ V Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMV--SCFSYGDVALIEQAV 184 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E+ V+ G +L EI V Y ++ +Y++ + + PA++P D Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVV-DDGPYDFDARYNAGRTEYFTPARLPADHLAAAC 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH + R +SR+D + D ++LE+NV PGMT S+FP AA + EL Sbjct: 244 AVAVRAHDVLRLRHLSRTDLVVDGY-GVAWFLEVNVAPGMTETSLFPLAAAASPTPLPEL 302 Query: 289 LLWMVEDA 296 + + A Sbjct: 303 YRGLADVA 310 >gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora] Length = 334 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 161/334 (48%), Gaps = 61/334 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV++GG S E +VS+S+G A + ++ + + + +I + R HL Sbjct: 11 IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 K DLA+ +HGN GE+G++Q ++L +PYT G AS+L Sbjct: 71 NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKK 146 + + F+ D+ L+ P +KP GGSS+ +K Sbjct: 131 TANNGT--------------------FSFDADALLREFELPVFVKPASGGSSVATTKVKS 170 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTE-IAVPKSDFY 200 + + + + + Q+L+E+++ G E CGV+ DA+ +TE I S+++ Sbjct: 171 REQVVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEVIPHGDSEYF 230 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY+ +S+ V PA++ ++ ++ ++ + + CRG+ R D+ +D +++++L Sbjct: 231 DYNAKYN-GSSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYFL 289 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG TP S+ P+ A AG S EL ++E Sbjct: 290 EVNTIPGQTPESMVPQQARAAGISIAELYHMVIE 323 >gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001] Length = 316 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+S EREVS SG A AL AG DV + LA + + F VLHG Sbjct: 6 VVVIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++ ILEL +PY + A + DK +K+ G+ S+ + + Sbjct: 66 VAGEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHD 125 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP GGS+ G+ +++ + +P L+ + + + D+ LIE+ Sbjct: 126 LGAAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEALM--ACFAYHDEALIER 183 Query: 171 YVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ GV +G+ + + + Y Y +Y+ PA+I +E Sbjct: 184 LVTGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAA 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R+A AH+ +G R +SR+D + +V LE NV PGMT S +P AG F + Sbjct: 244 RVAVAAHRTLGLRDLSRTDAIVTT-EGEVVVLETNVAPGMTLTSTYPMALEAAGLGFGDF 302 Query: 289 LLWMVEDA 296 + A Sbjct: 303 CRDLAAAA 310 >gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] Length = 329 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L +G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + + IK GSS+G + + + + Sbjct: 128 IPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGI--AD 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH- 213 ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS + T Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245 Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP++ + G+ F + L ++ AS Sbjct: 305 MFPKLLEHHGHRFSDYLEQILRKAS 329 >gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 321 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A AL AG + S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S ++ L+ DK +K + S G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ ++ +++P ++ ++ +GD LIEQ V Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAMVD--AYTYGDVALIEQLV 188 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ G++ G +L TEI VP S Y YE +Y++ + PA+I D Sbjct: 189 EGTEVAIGILDTGDGPEALPATEI-VPTSGVYGYEARYNAGLTRFFTPARISPDANAAAS 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+A+G +SR D + D + +++E+NV PG+T S+ P+ A AG +L Sbjct: 248 AAAIGIHRALGIGQMSRVDIIIDAA-GEPWFIEVNVIPGLTETSLLPQGLAAAGVEVGDL 306 Query: 289 LLWMVEDA 296 + E A Sbjct: 307 YRRLAEAA 314 >gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204] gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204] Length = 401 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 93/368 (25%), Positives = 155/368 (42%), Gaps = 78/368 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AV GG S E EVS+ S AL+ + V + V + Sbjct: 5 IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64 Query: 41 --------------SVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELL 75 +V+ +KP D+A V+HG GEDG +Q E+L Sbjct: 65 HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127 ++PY + +A+ DK+ K V++ +P+ V MD+ H + P Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA- 185 +IKP + GSS+GI + D+ + + ++++ E+ V E+ C V+GD+ Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLA--CFDEARQYDEKIITEKVVKPMREINCSVVGDSY 242 Query: 186 --SLDVTEIA--VPKSDFYSYELKY-------------SSLNSTHVLPAKIPLDIYKEVQ 228 V E V + + S+ KY ++ ++PA + + + +Q Sbjct: 243 SCVASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQ 302 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +LA + +G G+ R DFL D ++KV+ EIN PG S+ + AG SF EL Sbjct: 303 QLAKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPG----SLAFYLWKAAGVSFSEL 358 Query: 289 LLWMVEDA 296 + +VE A Sbjct: 359 MDKLVELA 366 >gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] Length = 316 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 157/308 (50%), Gaps = 18/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A L G V D D ++ L KPD+ + LHG Sbjct: 10 VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L+ IPY S A+ L+ DK +K +VS GV SI ++R + Sbjct: 70 GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S V+KP +GGS+ G+ ++ +P ++ ++N+ D LIEQ + Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAMVN--AYNYCDVALIEQRI 187 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G +L EI P Y++E +Y++ + PA+I Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEID-PVGGAYTFEARYNAGQTRFYTPARISGADADRAA 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH A+G R +SR D + D ++LE NV PG+T SIFP+ AG+ + Sbjct: 247 EAALAAHSALGLRHLSRVDMIVDGA-GTPWFLEANVLPGLTETSIFPQALVAAGHDLGRV 305 Query: 289 LLWMVEDA 296 + + A Sbjct: 306 YAALADAA 313 >gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] Length = 328 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 34/321 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG +SE ++SL SGK L+ + ++V I ++ + + Sbjct: 7 LGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDF 66 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D+ FN +HG GE+G + A+ ELL IP++ SAL+ +K V+ Sbjct: 67 TLQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLSVL 126 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P ++R + + P +K + GSS G+ +KK ++ L + Sbjct: 127 REINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQALQK 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GD-ASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ Q++IE ++G E++ GV GD L VTEI +++F+ Y KY S Sbjct: 187 --AFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIIT-ENEFFDYAAKYE-GKSQ 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+IP++ +EV++ + + +G +G+ RS+F+F + LEIN PG T S Sbjct: 243 EITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF--VDGVPHLLEINTVPGFTQKS 300 Query: 273 IFPEMAAYAGYSFRELLLWMV 293 I P+ A G E ++ Sbjct: 301 IIPQQALAMGIELSEFFNLLL 321 >gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 363 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 65/323 (20%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 20 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 79 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 80 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 139 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 140 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 199 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 200 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 257 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 258 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 317 Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266 +R DF EIN P Sbjct: 318 ARVDFFLT--DDGPVINEINTMP 338 >gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 330 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 154/326 (47%), Gaps = 38/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ERE SL+SGK +ALE+AG KV +D + L +PD+ ++ LHG Sbjct: 5 VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCP-SIL 112 GEDG +Q++LE L+IP+ S + +K ++ + P I Sbjct: 65 KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124 Query: 113 VNRFTMDSQHLI------------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + R P +KP GGS++G+ + + +L + S+ Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAILDALSF 184 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHV-- 214 + ++IEQ+V+G+E+ V+G +L EI VPK F+ E + ++ Sbjct: 185 --DEAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEI-VPKQGFFGTEARMEPGAVQYIAP 241 Query: 215 -LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 PA + D I E++R A ++A R ++R D ++D +VF E+NV PG Sbjct: 242 VRPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPG 299 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV 293 M S+FP AG S +L +V Sbjct: 300 MAERSLFPAACEAAGLSLSSVLNELV 325 >gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537] Length = 377 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------DVDRS--------- 41 +A++ GG SSE +VS S + +A+ G + V+ D D S Sbjct: 5 VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64 Query: 42 -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + + D+ F V+HGN GEDG +Q + LL P+ + Sbjct: 65 QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ G+ I+V N D + + +K G Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+GI + + L S +++ ++LIE+ V G EL GV+G+ V+ I Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY--KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAH 242 Query: 194 -VPKSD----FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP +Y Y K+ +S +PAK+ ++ +EV+ +A A+Q + RG +R D Sbjct: 243 TVPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+FP + +L+ +++ Sbjct: 303 FLLDE-NGIPYLGEPNTLPGFTNMSLFPRLWDDTNMDNAQLVDELIQ 348 >gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 345 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 65/323 (20%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV ++ R T+ Q + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ D +L+ + Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 EI V + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266 +R DF EIN P Sbjct: 300 ARVDFFLT--DDGPVINEINTMP 320 >gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 334 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41 + +L GG ++E E+SL S S LE + F V+++++ + Sbjct: 6 ILLLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + + D +HG GE G +QA LEL +PY G AS S +K+ SK Sbjct: 66 LQINGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P I ++ + L +K + GSS+G ++++ + L Sbjct: 126 ALGIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAELLNAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLN- 210 ++++ DQ+LIEQ V EL + E+ P+ FYSYE KYS + Sbjct: 185 -EGAFSYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSE 243 Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + V+ A + D +++ A + + R +SR DF P +V+ E+N PGMT Sbjct: 244 TQTVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M + ++F E + V+ + Sbjct: 303 PISMFPKMLQHNEHNFAEFMADCVQSS 329 >gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. PCC 9511] Length = 310 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D+ F +LHG GEDG + +L+ + P GIL SAL MDK+ K++ Sbjct: 42 NFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIF 101 Query: 101 SSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 S +P + + N +++ + P +KP GSSLGI K Sbjct: 102 SHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSE 161 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYS 207 I L + +W +++IE+ +D EL CG++G+ L +EI +D+Y Y+ KYS Sbjct: 162 IIKALQK--AWEIDSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS 219 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 N ++PA I I ++++ +A + +A+ G +R DF + +S K+F EIN PG Sbjct: 220 MDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPG 278 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T S+FP + +G + +L+ +V+ +S Sbjct: 279 FTSKSMFPMLWNASGLNIDQLVAKLVDISS 308 >gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] Length = 329 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41 + +L GG SSE E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R ++ +K + GSS+G + + + Sbjct: 125 AIGIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDKLSNAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTQIQLDSIQHASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 331 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 36/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S + L V ++++ Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 67 SDEFNESIHIDFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWYD 126 Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + +S L +K + GSS+G + + + + Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 ++ ++H Q+L+E+ V EL + L ++ EI P FYSY+ KYS+ Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + +Q+ + + + R +SR DF +++ E+N PGMT Sbjct: 245 SITEVEAKNLTEQQLATIQQCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L +E + Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] Length = 305 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+ +EREVSL+SG A A+AL +A F V ++ +D + + F LHG Sbjct: 6 VIVMYGGVGTEREVSLNSGDAIAAAL-EANFPVERLRLDSAELPGTIDAATSIVFPALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +QA+++ I Y SG AS L MDK R+K++ + V ++ + + Sbjct: 65 SFGEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPL 124 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + VIKP GSS+G+ + + + L Q H L EQ + G E Sbjct: 125 ADALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQI----HQGNWLAEQRIRGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GV+ ++ V EI + S Y Y KY+ ++ + PA++ + ++Q+ A + Sbjct: 181 LTVGVLHGKAMGVVEI-ISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYA 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A CR +R DFL D ++LE+N PG+T S+ P+ AA GY F L +V A Sbjct: 240 ACDCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLVSAA 297 >gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] Length = 323 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 12/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55 +AVL GGIS EREVSL SGK AL ++ IDV + +L + + Sbjct: 20 IAVLHGGISDEREVSLRSGKNVFEALTSYKELKDSTILIDVKDHYELVEILKKENVEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N+LHG FGEDG +Q +L+ L I YT L S+L M+K+ +K++ S + L+ Sbjct: 80 NILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLLED 139 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ + P ++KP+ GSS+G+ +IK + D + + + L E Y+ G Sbjct: 140 AVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEF--DNIVKDIKDIHNYFL-EPYIKGK 196 Query: 176 ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 E+T G++ D + PK++ Y Y+ KY+ + +PAK+ DI K++ Sbjct: 197 EVTVGLVRDNDDIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIENCK 256 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ +GC G+ R D + + +E+N Q GMT S P MA F +++L++ Sbjct: 257 KAYDVLGCEGLCRIDAIIS-DDGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVVLYI 315 Query: 293 V 293 + Sbjct: 316 L 316 >gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 389 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 145/364 (39%), Gaps = 78/364 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVS+ +G ++ + + + + + + Sbjct: 4 IAVVFGGRSVEHEVSIITGMQIMENMDKSKYNPIPLYITKEGKFLTGDCLKNFSTFKKND 63 Query: 49 ---------------------------------------LKPDLAFNVLHGNFGEDGLVQ 69 K D F LHG +GEDG Q Sbjct: 64 FSEAIEVFFKGYTGDSNMYTIKIQKSGLFSKENFGIEVYAKIDAVFPALHGTYGEDGCFQ 123 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------DSQH 122 +LEL+++PY G++++A+ MDK+ K+V S +P+ R + Sbjct: 124 GLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPMTEYFYFYRDEWKNRDEIIEKAE 183 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181 + +KP GSS+GI + + + ++ ++++E+ V+ E+ V Sbjct: 184 KLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAV--HYDRKIIVERAVENPREINAAV 241 Query: 182 M---GDASLDVTEIAVPKSDFYSYELKY--------SSLNSTHVLPAKIPLDIYKEVQRL 230 M GD + E + D YE KY N LPA IP D+ E+++ Sbjct: 242 MGYEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGMKNKKKNLPADIPEDVRAEIEKY 301 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A LA +AI G +R DFL D KV+ EIN PG + +G SF+EL+ Sbjct: 302 AHLAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPGSIAFYL----WEESGISFKELIT 355 Query: 291 WMVE 294 ++E Sbjct: 356 RLIE 359 >gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016] gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016] Length = 331 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 36/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S + L V ++++ Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 67 SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126 Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + +S L +K + GSS+G + + + + Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 ++ ++H Q+L+E+ V EL + L ++ EI P FYSY+ KYS+ Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L +E + Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] Length = 329 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 34/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41 + +L GG SSE E+SL S L V+++++ + Sbjct: 5 ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK Sbjct: 65 LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + R ++ +K + GSS+G + + + + Sbjct: 125 AIGIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDKLSNAV- 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211 + ++ DQ+L+E+ V EL + L +T E+ P FYSY+ KYSS + Sbjct: 184 -NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242 Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 243 SLTEVEAKNLTQVQLDSIQHASETVFRQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S+FP+M G+ F E L + A Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 329 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + + IK GSS+G + + + + Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGI--AD 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH- 213 ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS + T Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245 Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 +FP++ + G+ F + L ++ A Sbjct: 305 MFPKLLEHHGHRFADYLEQILRKA 328 >gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] Length = 330 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49 + +L GG +E EVSL S K A L + F ++ +++ + Sbjct: 4 ILLLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKT 63 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q++L++L IPY +S S +K+ SK Sbjct: 64 LLSGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWY 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + + ++ +K GSS+G + ++ + + Sbjct: 124 DALGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAI 183 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209 + ++ + Q+L+E+ V EL D L T E+ P FY+Y+ KY S Sbjct: 184 --NGAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGS 241 Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++T + + + K + + + + + +SR DF +++ E+N PGM Sbjct: 242 HSTTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S+FP++ + G F+ L V +A Sbjct: 301 TPISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6] gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6] Length = 331 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 140/327 (42%), Gaps = 36/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG SSE E+SL S + L V ++++ Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 67 SDEFNESIHIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126 Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + +S L +K + GSS+G + K + + + Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAID 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209 ++ ++H Q+L+E+ V EL + L ++ EI P FYSY+ KYS+ Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L +E + Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 320 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 150/306 (49%), Gaps = 14/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S ER SL+SGK A AL GF ID + + K D+A LHG Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEP-QAIESIQKIDVALIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114 GEDG +Q +LE+L +PYT SG+LASA+ M K KQ++SS G+ I + + Sbjct: 70 PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P IKP GG SLG + + L + ++ + L+E+YV G Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDY-LEYLVEEYVPG 188 Query: 175 IELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + GV+ +L V ++ +FY Y K+ P+ +P D+ + +Q Sbjct: 189 RPCSVGVIETSGRPEALPVHDVET-DREFYDYAAKHDPSKRIENCPSILPKDVTERLQEE 247 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A H G G+SR DF+ D R V LEIN PG++ + MA AG S+ L+ Sbjct: 248 AVRIHMLTGAHGVSRVDFIVDDNGRSV-ILEINTVPGLSDMGNLATMAKAAGMSYPALVT 306 Query: 291 WMVEDA 296 +++ A Sbjct: 307 AVLKTA 312 >gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 158/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + +L GG S ER+VSL+SG + A AL + G +V +D ++ L+P Sbjct: 3 IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEV 62 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F LHG +GEDG VQ LE + Sbjct: 63 GKEPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPL 133 +T + A A + K R++ V+++ GVPV L T + + P V KP+ Sbjct: 123 FTGADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPV 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+ V + D L+ L G +LL+E ++ G E T GV+G L V EI Sbjct: 183 ADGSSV--SVHRADSLAELERLAPEMRADGAELLVEPFLPGREFTVGVIGGQVLPVIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSDFLFD 251 + + + Y KY + V PA IP + +Q+LA AH+A+G SR+DF D Sbjct: 241 LS-TPLFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCD 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + LE+N PG+T S+ P A+ AG+++ +L +V A+ Sbjct: 300 A-TGEPMCLEVNALPGLTATSLLPLAASGAGWTYADLAERIVSLAT 344 >gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915] Length = 329 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 148/311 (47%), Gaps = 18/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ AL V DV + L P + VL+G Sbjct: 14 VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG V+ +LEL +PY + A L+ DK +K ++ G+ S+ ++ Sbjct: 74 GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP GGS+ G+ ++K +P L+ + + H D LIE+ V Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAALM--ACFAHHDTALIERAV 191 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G+E+ GV+ G ++ EI VP+ Y Y YS+ + PA++ ++ V Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEI-VPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVA 250 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+A+ R +SR+D + D +VF LE V PG+T S F A GY+F ++ Sbjct: 251 EAAVTAHRALRLRDLSRTDLIVDK-DDQVFVLETAVAPGLTDTSTFAMGIAAQGYAFGDV 309 Query: 289 LLWMVEDASCL 299 + + A Sbjct: 310 WRRLAQIAEAR 320 >gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 348 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------- 41 +L GG SSE E++L S + L+ + + + +D+ Sbjct: 6 LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65 Query: 42 -------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + L + + +HG +GEDG +Q L+ ++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + N + D + I P ++KP GSS+G+ Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVGVN 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200 + + S + +++L+E+ + G E+ ++GD L ++ V F Sbjct: 186 KAENIDELLK--FGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHIFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ +LP + + K++ A ++A C+G +R D + + Sbjct: 244 DYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIFL--KDNEFYIN 301 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F ++L ++E+ Sbjct: 302 EINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEE 337 >gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] Length = 318 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 34/313 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41 + +L GG SSE E+SL S LE F V ++++ + + Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + A D +HG GE G +Q++LEL IPY G ASA S +K+ SK Sbjct: 66 LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + +P P + + + T S + +K + GSS+G + + I + Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210 +++ +Q+L+EQ V EL + L ++ E+ P+ FYSYE KYS+ + Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243 Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + VL A+ + + +Q A + R +SR DF +++ E+N PGMT Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302 Query: 270 PVSIFPEMAAYAG 282 P+S+FP+M + G Sbjct: 303 PISMFPKMLEHNG 315 >gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3] Length = 397 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 74/364 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43 + V GG S E EVS+ S +++ ++V+ + + R++ Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVTPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 44 LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 +L + D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESRRVILVNDGGKVQLVLYPGKKFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184 P ++KP+ GSS+GI++ D+ + D +++ + +LL+E + E+ C V GD Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242 Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232 A+ +E P + SYE KY + + +PA I ++++ LA Sbjct: 243 ATAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGMATLKRKIPADISDKTREQIRTLAV 302 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M Sbjct: 303 KAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358 Query: 293 VEDA 296 + A Sbjct: 359 ISLA 362 >gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] Length = 397 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 155/364 (42%), Gaps = 74/364 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43 + V GG S E EVS+ S +++ ++V + + R++ Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 44 LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 +L + D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184 P ++KP+ GSS+GI++ D+ + D +++ + +LL+E + E+ C V GD Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242 Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232 A+ +E P + SY+ KY + + +PA I + ++++ LA Sbjct: 243 ATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAV 302 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M Sbjct: 303 KAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358 Query: 293 VEDA 296 + A Sbjct: 359 ISLA 362 >gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] Length = 310 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 12/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL SGKA A+A F+V DV S + + F+ LH Sbjct: 6 IAVLYGGTSEEREVSLGSGKAAAAA-LGKSFEVDLFDVQAYSRLPDGLDPRRHVVFSTLH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G+FGEDG Q +++ + Y ++S L+ DK+ +K+ +S+ GVPV ++ + Sbjct: 65 GSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAIP 124 Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + V+KP+ GSS+G++ + + I L + L+E + G Sbjct: 125 GVEEIIGRLGSSVVLKPVAQGSSVGLMFAESEAKIVGCLKNCE----EGRWLVEPRIQGQ 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T G++ ++ V EI PKS + Y KY+ + ++ PA+ ++ + +++LA A Sbjct: 181 EATVGILDGEAMGVVEIR-PKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLATKAF 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A GCR +R D + D ++LEIN PG+ S+ P AA +GY+F ELL +VE Sbjct: 240 EACGCRDYARIDCMVDT-GGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKLVEP 298 Query: 296 A 296 A Sbjct: 299 A 299 >gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 158/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + +L GG S ER+VSL+SG + A AL + G +V +D ++ L P Sbjct: 3 IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEV 62 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 DL F LHG +GEDG VQ LE + Sbjct: 63 GKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133 +T +G A A + +K R++ V+++ GVPV L + + P P V KP+ Sbjct: 123 FTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPV 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+ V + D L+ L G LL+E ++ G E T GV+G L V EI Sbjct: 183 ADGSSV--SVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLPVIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSDFLFD 251 + + + Y KY + V PA+IP + +Q+LA AH+A+G SR+DF D Sbjct: 241 LS-TPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCD 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + LE+N PG+T S+ P A+ AG+++ +L +V A+ Sbjct: 300 AA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 344 >gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 345 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 140/338 (41%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L G SSE ++SL S + L + +K+ + +++ + K D Sbjct: 4 VYILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLV 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + +HG +GEDG +Q +L++ + Y +G+L+ Sbjct: 64 RDIKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLS 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140 SA+ MDK+ S + + + NR F I P ++KP GSS+G Sbjct: 124 SAICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198 + + + + + + ++L+E+ + G E+ V+G + DV+ + Sbjct: 184 VSKVTSKEELLEAGYLAL--KYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHT 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F Y+ KY S + LP + D KE Q A++ GC G +R D + + Sbjct: 242 FLDYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFY-GEDGNFY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + +F E+L +++D Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDD 338 >gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277] gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC 33277] Length = 330 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 147/324 (45%), Gaps = 34/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E VSL S S L F + ++R Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S G+ + S+ + D + P +KP GGSS+ + + + + Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIG 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211 Q +++ G++++IE+ + G E+TCG +L VTE+ V ++F+ ++ KY+ Sbjct: 186 Q--AFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYN-GAV 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA+I + + +Q + ++ + RGI R D++ LE+N PGMTP Sbjct: 242 EEITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPT 300 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ A +E+L ++ D Sbjct: 301 SFIPQQVRAAEMDMKEVLCTIIRD 324 >gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] Length = 321 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 162/315 (51%), Gaps = 21/315 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ AL AG S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S A+ L+ DK +K + + G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ +++ ++P ++ ++ +GD LIEQ + Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVD--AYTYGDVALIEQLI 188 Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +G E+ GV+ G +L TEI VP S Y YE +Y++ + PA+I + Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEI-VPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAS 247 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+A+G +SR D + D + ++LE+NV PG+T S+ P+ A AG +L Sbjct: 248 TAAVGIHRALGIGQMSRVDIIIDAA-GEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDL 306 Query: 289 LLWMVE---DASCLR 300 + E DAS +R Sbjct: 307 YRRLAEAARDASTIR 321 >gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 248 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + + Sbjct: 3 ALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM 62 Query: 117 T---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D + P V+KP GGSS+G+ ++ + + + + +++IE+Y+ Sbjct: 63 EDLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIK 120 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+TC + L + I ++F+ Y KY ST ++P ++ + V + + Sbjct: 121 GDEITCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLA 178 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A+ C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++ Sbjct: 179 CYKALKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMII 236 Query: 294 EDASCLR 300 E + +R Sbjct: 237 ETSLRVR 243 >gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] Length = 398 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 157/363 (43%), Gaps = 73/363 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS+ SG +++ + V + + ++ + + Sbjct: 10 VAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYKNID 69 Query: 47 -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+AF V+HG EDG Q L+ + Sbjct: 70 ELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYLKTM 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPP 127 IP+ + ASA+ MDK +K V+ VPV + L D +++ P Sbjct: 130 GIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVFGYP 189 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA- 185 ++KP+ GSS+GI V K + L ++ + ++L+E + E+ C V+GD Sbjct: 190 VIVKPVNLGSSVGISVAKSR--VELANSVDDAFRYATKVLVEHAITNLREINCSVLGDEN 247 Query: 186 SLDVTEIAVP--KSDFYSYELKY----------SSLNSTHVLPAKIPLDIYKEVQRLAFL 233 +E P D SYE KY + + +PA++ + +EV+ LA Sbjct: 248 DAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAVR 307 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +A+GC G+SR DF+ D + K+++ EIN PG S+ + G ++ELL M+ Sbjct: 308 SFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRMI 363 Query: 294 EDA 296 + A Sbjct: 364 QLA 366 >gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] Length = 360 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44 + VL GG S+ER VS+SSG +AL G + + ID+ D + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 45 VLA------------------------------HLKPDLAFNVLHGNFGEDGLVQAILEL 74 L D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V S +Y ++ K+ + + + P + +++ ++ ++ +G + R DF Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 298 NDKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338 >gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG] Length = 360 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VS+SSG +AL G + + ID Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 38 ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 +D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V S +Y ++ K+ + + + P + +++ ++ ++ +G + R DF Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 298 NDKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338 >gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 395 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 155/367 (42%), Gaps = 78/367 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGLVLAH- 48 +AVL GG+S E EVS+ +G ++ + + D + G + + Sbjct: 8 IAVLFGGVSVEHEVSVITGMQVVENMDKTKYNPIPVLVTKEGKFLSGDAIKDFGNIKRNK 67 Query: 49 ---------------------------------------LKPDLAFNVLHGNFGEDGLVQ 69 K D F LHG FGEDG VQ Sbjct: 68 LEDAKEVFFKPVRGDFNLYTEEEQGGGLFSKKTSGTVVFAKIDAVFVALHGTFGEDGAVQ 127 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHL 123 IL+ + IPYT + A+A+ MDK+ K V S +P+ R Sbjct: 128 GILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTDYFYFYRDFYKFDIVKAEAEK 187 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P +KP GSS+GI K + + + + ++ ++++E+ V+ E+ C V+ Sbjct: 188 IGYPVFVKPANLGSSVGISKAKNEAELKDAV--EVAMHYDRKIIVEKSVEKPREINCAVL 245 Query: 183 G---DASLDVTEIAVPKSDFYSYELKYSSL----------NSTHVLPAKIPLDIYKEVQR 229 G D +TE + DF +Y+ KY S N LPA IP ++ +EV+R Sbjct: 246 GYEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMKNQKKNLPANIPDEMTEEVKR 305 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA LA ++I G++R DFL D + KV+ EIN PG +F G SF+EL+ Sbjct: 306 LAKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPGSIAFYLF----EPMGISFKELI 360 Query: 290 LWMVEDA 296 ++ A Sbjct: 361 DRQIDLA 367 >gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a] Length = 397 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 154/364 (42%), Gaps = 74/364 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43 + V GG S E EVS+ S +++ ++V + + R++ Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 44 LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 +L D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESHRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184 P ++KP+ GSS+GI++ D+ + D +++ + +LL+E + E+ C V GD Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242 Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232 A+ +E P + SY+ KY + + +PA I + ++++ LA Sbjct: 243 ATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAV 302 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M Sbjct: 303 KAFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358 Query: 293 VEDA 296 + A Sbjct: 359 ISLA 362 >gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] Length = 360 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VS+SSG +AL G + + ID Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 38 ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 +D S L VLA K D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R + P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V S +Y ++ K+ + + + P + +++ ++ ++ +G + R DF Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 298 NNKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338 >gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei ATCC 334] gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334] gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W] gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II] Length = 357 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44 + VL GG S+ER VS+SSG +AL G + + ID+ D + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62 Query: 45 VLA------------HLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 L L+PD + F LHG GE+G VQA+ ++ Sbjct: 63 DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R Q + P V+KP Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G +I + + L + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIIHNQEELESGLEDV--FRFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V +S +Y ++ K+ + + + P + D+++ ++ +A +G + R DF + Sbjct: 241 V-RSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFANE 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ +E N PGMTP+S+ P+ A G + +L++ +V Sbjct: 300 KG--VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIV 338 >gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 145/286 (50%), Gaps = 18/286 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ A +L AG V + DVD S+ L +PD LHG Sbjct: 6 VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114 GE+G +QA+LELL +P+ S A DK +K + G+ + + Sbjct: 66 GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125 Query: 115 ---RFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 R +D+ + P ++KP +GGS+LG V+ + +P ++ + + D +L E+ Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPSVMVSCLA--YSDTVLAER 183 Query: 171 YVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 ++DG E+ V+ L + E+ P Y Y +Y+ ++ PA++ D+ Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVE-PLGGVYDYTARYTPGSTDFHCPARLAPDVLAR 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 VQ A AH+ +G R +SR D + D V LE+NV PG+T S Sbjct: 243 VQDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287 >gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 377 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSV----------GLVLAHL 49 +A+L GG SSE +VS S + A+ G + V+ + ++ L LA Sbjct: 6 VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + LL PY + Sbjct: 66 QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDS-QHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+++ +T D + + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193 SS+GI +K L S +++ ++LIEQ V G EL GV+G+ V+EI Sbjct: 186 SSVGISRVKNAVEFETALADSFQYDY--KVLIEQAVKGPRELEVGVIGNEEPIVSEIGAH 243 Query: 194 -VPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP+ +Y Y K+ ++ + +PA++P ++ +EV+ +A +++ + RG +R D Sbjct: 244 TVPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 FL D + + E N PG T +S+F + Y+ +L+ M+ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348 >gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp. salmonicida A449] gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 329 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 33/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + + IK GSS+G + + + Sbjct: 128 IPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNETDLLQGIKD-- 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLN--ST 212 ++ + +Q+LIE+ V EL V GD + EI VP+ FY+YE KYSS + +T Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSSASHTAT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 SLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMV 293 +FP++ + G+SF L ++ Sbjct: 305 MFPKLLEHHGHSFAHYLEQIL 325 >gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 390 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 148/366 (40%), Gaps = 78/366 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GGIS E EVS+ +G L+ F I + + + Sbjct: 4 VAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEGK 63 Query: 50 ---------------------------------------KPDLAFNVLHGNFGEDGLVQA 70 + D F LHG FGEDG +Q Sbjct: 64 YREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQG 123 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HL 123 + E + IPY G+LA A MDK+ K + + +PV R + Sbjct: 124 LFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKKCEK 183 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 + P ++KP GSS+GI +K + L +S N+ ++++E+ + D E+ V+ Sbjct: 184 LGYPLIVKPANLGSSIGISKVKDTLELTKALEVAS--NYDKKIIVEKCLTDHREINVAVL 241 Query: 183 GDA-SLDVTEIAVP--KSDFYSYELKY---------SSLNSTHVLPAKIPLDIYKEVQRL 230 GD L V+ P D +Y KY S N LPA + +++ ++ +L Sbjct: 242 GDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQL 301 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +AI G+SR DFL + +V+ EIN PG +F G SF++LL Sbjct: 302 AKESFKAIDATGVSRIDFLL--KNDEVYVNEINTLPGSIAFYLF----EVEGLSFKDLLT 355 Query: 291 WMVEDA 296 ++E A Sbjct: 356 KLLEIA 361 >gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114] gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114] Length = 330 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49 + +L GG +E EVSL S K + L + F+++ +++ + Sbjct: 4 ILLLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKT 63 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q++L++L IPY +S S +K+ SK Sbjct: 64 LLSGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWY 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + + ++ +K GSS+G + + + + Sbjct: 124 DALGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAI 183 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209 + ++ + Q+L+E+ V EL D L T E+ P FY+Y+ KY S Sbjct: 184 --NDAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGS 241 Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++T + + + K + + + + + +SR DF +++ E+N PGM Sbjct: 242 HSTTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S+FP++ + G F+ L V +A Sbjct: 301 TPISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238] gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238] Length = 343 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD---------------RSVGL 44 + +L GG +E EVSL S A L + F+++ +++ RS Sbjct: 17 ILLLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKT 76 Query: 45 VL----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +L A D +HG GE G +Q++L++ IPY AS S +K+ SK Sbjct: 77 LLCNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWY 136 Query: 101 SSCGVPVCPSILVNRF--TMDSQHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + +P P + + T + L++ +K GSS+G + + + + Sbjct: 137 DALSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVEAV 196 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209 ++++ + +Q+L+E+ V EL D L T E+ P FY+YE KY S Sbjct: 197 --NNAFTYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGS 254 Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++T + + + + + + + + + +SR DF +++ E+N PGM Sbjct: 255 HSTTTLDAKNLTEEQIELINKYSRKVFTQMKLKDLSRIDFFLT-DENEIYLNEVNTFPGM 313 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 TP+S+FP++ + G+ F+ L + +A Sbjct: 314 TPISMFPKLLEHNGHCFKTFLQKAILNA 341 >gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36 +A++ GG SSE +VS S + +A+E G +++ Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 37 --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D + + + D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194 SS+GI + + L S +++ ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 195 ------PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +Y Y K+ ++ H PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 386 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36 +A++ GG SSE +VS S + +A+E G +++ Sbjct: 15 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74 Query: 37 --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D + + + D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 75 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194 SS+GI + + L S +++ ++LIE+ V+G EL GV+G+ V+EI Sbjct: 195 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 252 Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 253 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 312 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 313 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 358 >gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 377 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36 +A++ GG SSE +VS S + +A+E G +++ Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 37 --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D + + + D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194 SS+GI + + L S +++ ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 159/347 (45%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQI----------------------- 36 +A++ GG SSE +VS S + +A+E +++ Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 37 --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D + + + D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+V N ++ D + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194 SS+GI + + L S +++ ++LIE+ V+G EL GV+G+ V+EI Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +Y Y K+ ++ H +PA++ ++ KEV+++A A++ + RG +R D Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] Length = 361 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 154/341 (45%), Gaps = 57/341 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLK------ 50 + + G S E E+S+ + + S+++ + V I + +S VL L+ Sbjct: 4 IGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDFD 63 Query: 51 -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D F V HG GEDG Q + E+ IPY+ Sbjct: 64 KLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYSG 123 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGS 137 +SA +MDK+ +K ++ + V + + + P ++KP + GS Sbjct: 124 CNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEEFFKRCEKNLGYPMIVKPARLGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--P 195 S+G+ + ++ + + +++L+E++++ E+ C VMG ++ V+E+ Sbjct: 184 SIGVSKVVDRKNFEEAVKNVLLF--DNKVLVEKWINAREINCAVMGYKNIFVSELEEINK 241 Query: 196 KSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 K+DF+++E KY S H++PA+I ++ +++ +A + + C G R DFL Sbjct: 242 KNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRIDFLI-- 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + K++ EIN PG +S + + +G++F +++ M+ Sbjct: 300 -ADKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMI 335 >gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] Length = 377 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 56/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASA-LEDAGFKVSQI---------DVDRS--------- 41 +A++ GG SSE +VS S + A L ++++ D +RS Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65 Query: 42 -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + A D+ F V+HGN GEDG +Q + +LL PY + Sbjct: 66 RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+V+ T + + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195 SS+G+ K L S +++ ++LIE V G EL GV+G+ V+EI Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY--KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAH 243 Query: 196 K-------SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +Y Y K+ +S +PA +P + EV+ +A A++ + RG +R D Sbjct: 244 HVPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 FL D + + E N PG T +S+F + Y+ EL+ +++ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349 >gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3] gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3] Length = 336 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 37/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N++ D+ +K GSS+G + D S + Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKV--DDSSKVAD 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ + +++E+ + EL V + EI + FY+++ KY+ + Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ +P DI ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329 >gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis Sweden2] gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/150] gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/11023] Length = 803 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ ++ Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLI 777 >gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] Length = 411 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 85/375 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------SVG 43 + V+ GG S E EVS+ S AL+ ++V + + + ++ Sbjct: 5 VGVVFGGESVEHEVSVISALQGIEALDKERYEVIPLYISKQRDFYSSPALLEVENYKNLD 64 Query: 44 LVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 ++ P D+ ++HG GEDG +Q LE+L+ Sbjct: 65 ELIQKATPVVLVKKGKEVVVEPIKKGLFTKPIGTVDVIVPIMHGTNGEDGTIQGYLEMLK 124 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPY 128 IPY ++ +A+ DK+ K ++ + G+PVCP + + H + P Sbjct: 125 IPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWFWLYGHEFAQKQEAVLAQVHELGYPV 184 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG---D 184 V+KP GSS+GI + D+ + + + +++++EQ V E+ C V+G D Sbjct: 185 VMKPACLGSSVGITIAHNDEEFIAGV--EDARQYDNKIVVEQMVKNLREINCSVLGSCFD 242 Query: 185 ASLDVTEIAVPKSDFYSYELKY-----------------------SSLNSTHVLPAKIPL 221 V E + + S++ KY ++ ++PA + Sbjct: 243 CQASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGGVKCGTKSGDGGMASAARIVPAPVDE 302 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++++ LA + +G G+ R DF+ D + ++ EIN PG + Sbjct: 303 ATTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGMIYVNEINTIPGSLAYYL----WQPV 358 Query: 282 GYSFRELLLWMVEDA 296 G SF +L+ +V A Sbjct: 359 GVSFTQLMDTLVSQA 373 >gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] Length = 414 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 153/377 (40%), Gaps = 87/377 (23%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47 + V+ GG+S E EVS+ +G A+AL+ +++ + + + L Sbjct: 10 VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69 Query: 48 HLK-----------------------------------PDLAFNVLHGNFGEDGLVQAIL 72 L+ D+ LHG GE+G VQ + Sbjct: 70 ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 E L +PYT SG+L SAL MDK+ SK + G+PV + + Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + P V+KP + GSS+GI ++ Q++ D ++ + +++++E+ + E+ C V+ Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQAL--DAAIEEAFRYDEKVVVERAIRNLREINCAVL 247 Query: 183 GD--ASLDVTEIAVPKSD---FYSYELKY------------------SSLNSTHVLPAKI 219 GD + +SD +++ KY + ++PA + Sbjct: 248 GDPSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLDRIIPAPL 307 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + VQ +A Q C G++R DFL D + +V++ EIN PG S + + Sbjct: 308 DEAQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG--SFSFY--LWE 363 Query: 280 YAGYSFRELLLWMVEDA 296 G F L+ ++ A Sbjct: 364 PVGVPFDALMDELIRLA 380 >gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70] gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s] Length = 803 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ ++ Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLI 777 >gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 312 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58 +A+L GG S E + S S A AL + G + +D+ PD AF Sbjct: 5 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW---KRLPDFEAAFIAG 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 62 HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 121 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +Q I P KP G S +++ D+ + L + ++ D+ + E ++ Sbjct: 122 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYS-SDEFIAEPFLT 180 Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G T GV+ +L V E AV +FY E K + PA IP + +Q Sbjct: 181 GNTFTVGVLDIDGKIEALPVLE-AVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQE 239 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA GCRG++R DF+ + LE+N PG+T MA +G +R ++ Sbjct: 240 LAVRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVV 297 Query: 290 LWMVEDA 296 M++ A Sbjct: 298 EIMLQSA 304 >gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC] gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC] Length = 833 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 480 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 539 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 540 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 599 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 600 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 657 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 658 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 717 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 718 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 776 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ +V Sbjct: 777 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 807 >gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 310 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 18/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58 +A+L GG S E + S S A AL + G + +D+ PD AF Sbjct: 3 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW---KRLPDFEAAFIAG 59 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 60 HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 119 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +Q I P KP G S +++ D+ + L + ++ D+ + E ++ Sbjct: 120 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYS-SDEFIAEPFLT 178 Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G T GV+ +L V E AV +FY E K + PA IP + +Q Sbjct: 179 GNTFTVGVLDIDGKIEALPVLE-AVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQE 237 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA GCRG++R DF+ + LE+N PG+T MA +G +R ++ Sbjct: 238 LAVRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVV 295 Query: 290 LWMVEDA 296 M++ A Sbjct: 296 EIMLQSA 302 >gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276] gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276s] gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11222] Length = 803 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ +V Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis A/HAR-13] gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9768] gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11074] gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9301] Length = 803 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ +V Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4] gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4] Length = 336 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 142/325 (43%), Gaps = 37/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N++ ++ +K GSS+G + D S + Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKV--DDSSKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ + +++E+ + EL V + EI + FY+++ KY+ + Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ +P DI ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329 >gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia trachomatis D/UW-3/CX] Length = 803 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ +V Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 803 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 + ++ GG S E E+S+ S K A L + + VS + R Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509 Query: 41 -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569 Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +S G+PV P + + +++ S P +K GSS+G+ + I Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205 L + ++ + + +E+ G E+ V+GD S + + F Y+ K Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEK 687 Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 Y ++ V + +I +++ A ++ + +G R DF D + E+ Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G+S+ +++ +V Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185] gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185] Length = 337 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 37/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + F V ++++D+ A Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + D S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKV--DDSAKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210 + ++ + +++E+ + EL V + + T EI + FY+++ KY+ + Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329 >gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 380 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 145/354 (40%), Gaps = 64/354 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S+E +VS+ S + ++ + V V + Sbjct: 8 VAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENLLNE 67 Query: 46 -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 +A K D+ F VLHG GEDG +Q +LE Sbjct: 68 HRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGMLEF 127 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLIS 125 + +PY G+ ASA +DK +K + +PV V ++ D Q ++ Sbjct: 128 MGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQKKMN 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG- 183 P+ +KP + GSS+GI + + L ++ + ++++EQ V+ ELT GVMG Sbjct: 188 YPFYVKPARLGSSIGISRAENTVELKTSLKD--AFKYDCKVVVEQGVESPRELTVGVMGI 245 Query: 184 DASLDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 D + ++ I +++++ KY ++PA + +I + +++ + L + Sbjct: 246 DDQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKKFEL 305 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G +R D+ KV+ EIN PG F + G ++ + +E Sbjct: 306 SGFARIDYFL--CGDKVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357 >gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223] gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223] Length = 337 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 143/325 (44%