PSIBLAST alignment of GI: 254781179 and protein with PDB id: 2pvp
>gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367
>gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367
Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%)
Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
VL GG S E E+S+ S A L+D I+ + +
Sbjct: 24 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 83
Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
K L N++HG GEDG + ++LE I + I A
Sbjct: 84 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 143
Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
S LS +K +K G+ +L+N + + P+++KP GSSLG+ V
Sbjct: 144 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 203
Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
+K+++ + L + + ++LIE ++ G++ G + I P +
Sbjct: 204 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 261
Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
+ S + P + ++++ + + I R DF +V+
Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE--NEVYLN 319
Query: 261 EINVQPGMTPVSIF 274
EIN PG +F
Sbjct: 320 EINPIPGSLANYLF 333