PSIBLAST alignment of GI: 254781179 and protein with PDB id: 3k3p
>gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383
>gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 44/335 (13%)
Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52
+L GG S+ER+VS+ S ++ A+ F V + ++ + + D
Sbjct: 41 VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 99
Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
+ F VLHG GEDG +Q LE+L++PY + IL+S+++
Sbjct: 100 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 159
Query: 91 MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
MDK+ + Q + V + + + + + P +KP GSS+GI
Sbjct: 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 219
Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201
+ + + + + ++LIEQ VD E+ G+ D + V FY
Sbjct: 220 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 277
Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ E
Sbjct: 278 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 336
Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
+N PG T S++P + G S+ L+ +V A
Sbjct: 337 LNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371