PSIBLAST alignment of GI: 254781179 and protein with PDB id: 3n8d
>gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364
>gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364
Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 46/339 (13%)
Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
+ ++ GG S+E EVS+ + + +A++ + V I +
Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65
Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
+L D F +LHG GEDG +Q + E+L++PY +G+L++A
Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125
Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
SMDK+ KQ+ G+P P I R + ++ P +KP GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185
Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
GI + + + ++ +L+IEQ V+ E+ V+G+ + T V
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243
Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
FY Y+ KY +PA + D+ ++ +A A + C G+ R+DF ++
Sbjct: 244 AFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTE-DNQI 302
Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
+ E N PG T S++P++ G S+ EL+ ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341