RPSBLAST alignment of GI: 254781179 and protein with PDBid: 1iow

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Length = 306

 Score =  246 bits (628), Expect = 6e-66
 Identities = 105/304 (34%), Positives = 160/304 (52%), Gaps = 13/304 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG 
Sbjct: 6   AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGR 65

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   +  
Sbjct: 66  GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG 125

Query: 122 HL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP + GSS+G+  +  + +  L      ++ H +++LIE+++
Sbjct: 126 LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA--LQDALRLAFQHDEEVLIEKWL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  ++G+  L    I  P   FY YE K+ S  + +  PA +       +Q L  
Sbjct: 184 SGPEFTVAILGEEILPSIRI-QPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVL 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ +
Sbjct: 243 KAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301

Query: 293 VEDA 296
           +E A
Sbjct: 302 LELA 305