RPSBLAST alignment of GI: 254781179 and protein with PDBid: 2fb9
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322
Score = 157 bits (397), Expect = 3e-39
Identities = 95/318 (29%), Positives = 152/318 (47%), Gaps = 27/318 (8%)
Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVDR 40
++ GG+S E EVSL S + + + + +
Sbjct: 7 LLIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAPEGEH 66
Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
L+ + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+V+
Sbjct: 67 PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVL 126
Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
+ GVPV P + R PP+ +KP GSS+GI +++ Q + L +
Sbjct: 127 AQAGVPVVPWV-AVRKGEPPVVPFDPPFFVKPANTGSSVGISRVERFQDLE-AALALAFR 184
Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAK 218
++ + EL GV+G+ + + + ++ FY YE KY+ + ++PA
Sbjct: 185 YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP 244
Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
+ + VQ LA A++ +G RG++R DF +++ E+N PG TP S++P +
Sbjct: 245 LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLF 302
Query: 279 AYAGYSFRELLLWMVEDA 296
G ++ ELL +VE A
Sbjct: 303 EAGGVAYPELLRRLVELA 320