RPSBLAST alignment of GI: 254781179 and protein with PDBid: 2pvp
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} Length = 367
Score = 136 bits (343), Expect = 5e-33
Identities = 71/337 (21%), Positives = 129/337 (38%), Gaps = 49/337 (14%)
Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKV----------------------SQIDVD 39
VL GG S E E+S+ S A L+D +QI
Sbjct: 24 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 83
Query: 40 RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
+ L+L H ++ L N++HG GEDG + ++LE I + I A
Sbjct: 84 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 143
Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIV 143
S LS +K +K G+ +L+N + + P+++KP GSSLG+ V
Sbjct: 144 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 203
Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFY 200
+K+++ + S++ + ++LIE ++ G+ L + K +F
Sbjct: 204 VKEEKELIY--ALDSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 261
Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
++ KY + A + + ++++ + + I R DF +V+
Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENEVYLN 319
Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
EIN PG +F + + L + +
Sbjct: 320 EINPIPGSLANYLFDDF----KTTLENLAQSLPKTPK 352