RPSBLAST alignment of GI: 254781179 and protein with PDBid: 2pvp

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} Length = 367
 Score =  136 bits (343), Expect = 5e-33
 Identities = 71/337 (21%), Positives = 129/337 (38%), Gaps = 49/337 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKV----------------------SQIDVD 39
            VL GG S E E+S+ S  A    L+D                           +QI   
Sbjct: 24  CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 83

Query: 40  RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 84  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 144 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 203

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFY 200
           +K+++ +       S++ +  ++LIE ++ G+    L    +             K +F 
Sbjct: 204 VKEEKELIY--ALDSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 261

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF       +V+  
Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENEVYLN 319

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           EIN  PG     +F +       +   L   + +   
Sbjct: 320 EINPIPGSLANYLFDDF----KTTLENLAQSLPKTPK 352