RPSBLAST alignment of GI: 254781179 and protein with PDBid: 3i12
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} Length = 364
Score = 157 bits (398), Expect = 2e-39
Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 55/347 (15%)
Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
++ GG S+E EVSL S K A++ F V + +D++ +
Sbjct: 7 GIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAH 66
Query: 47 ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
D+ F ++HG GEDG +Q +L + +P
Sbjct: 67 IALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126
Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKP 132
+ S +L+SA MDK +K+++ G+ + P I + R + + P +KP
Sbjct: 127 FVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKP 186
Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
GSS+G+ + + + ++ ++++EQ + G E+ C V+G+ +
Sbjct: 187 ANQGSSVGVSKVANEAQYQQA--VALAFEFDHKVVVEQGIKGREIECAVLGNDNPQASTC 244
Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
EI + + + V+PA+IP ++ +++ +A A+Q +GC G++R D
Sbjct: 245 GEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVF 304
Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
+V EIN PG T +S++P++ +G + +L+ ++E A
Sbjct: 305 LTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350