RPSBLAST alignment of GI: 254781179 and protein with PDBid: 3i12

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} Length = 364
 Score =  157 bits (398), Expect = 2e-39
 Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 55/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E EVSL S K    A++   F V  + +D++    +               
Sbjct: 7   GIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAH 66

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F ++HG  GEDG +Q +L +  +P
Sbjct: 67  IALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKP 132
           +  S +L+SA  MDK  +K+++   G+ + P I + R    +         +  P  +KP
Sbjct: 127 FVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
              GSS+G+  +  +         + ++    ++++EQ + G E+ C V+G+ +      
Sbjct: 187 ANQGSSVGVSKVANEAQYQQA--VALAFEFDHKVVVEQGIKGREIECAVLGNDNPQASTC 244

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +    +           +  V+PA+IP ++  +++ +A  A+Q +GC G++R D  
Sbjct: 245 GEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVF 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 305 LTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350