RPSBLAST alignment of GI: 254781179 and protein with PDBid: 3lwb

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373

 Score =  235 bits (601), Expect = 7e-63
 Identities = 93/356 (26%), Positives = 150/356 (42%), Gaps = 65/356 (18%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
           AV+ GG S+E  +S  S  +    L+   F V  + +                       
Sbjct: 14  AVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNREL 73

Query: 41  --------------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                       G        D+ F VLHG +GEDG +Q +LEL
Sbjct: 74  PQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLEL 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVI 130
             +PY  +G+LASA+ MDK  +K+++++ G+PV    ++              +  P  +
Sbjct: 134 AGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFV 193

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---- 186
           KP +GGSS+G+  +       L    + +  H  ++++E  + G EL CGV+        
Sbjct: 194 KPARGGSSIGVSRVSSWD--QLPAAVARARRHDPKVIVEAAISGRELECGVLEMPDGTLE 251

Query: 187 -LDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              + EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI C
Sbjct: 252 ASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDC 311

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG++R DF            EIN  PG T +S++P M A +G  +  LL  M+E  
Sbjct: 312 RGLARVDFFLTD--DGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365