Query gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:38:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781180.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fca_A TRNA (guanine-N(7)-)-me 19.7 24 0.001 17.3 0.6 27 45-71 128-154 (213)
2 1yzh_A TRNA (guanine-N(7)-)-me 16.9 37 0.0016 16.2 1.0 28 44-71 130-157 (214)
3 2yui_A Anamorsin; cytokine-ind 16.3 34 0.0014 16.4 0.7 16 55-70 89-104 (182)
4 3ckk_A TRNA (guanine-N(7)-)-me 15.7 21 0.00089 17.6 -0.5 28 44-71 142-169 (235)
5 1un0_C Nucleoporin NUP2; nucle 11.6 47 0.002 15.7 0.4 14 55-68 36-50 (51)
6 1kid_A Groel (HSP60 class); ch 11.4 1E+02 0.0042 13.9 2.8 29 29-57 172-201 (203)
7 1h8b_A ACT-EF34, alpha-actinin 11.0 1E+02 0.0043 13.8 2.0 32 25-59 23-54 (75)
8 1tvk_B Tubulin beta chain; epo 9.3 73 0.0031 14.6 0.7 41 2-42 190-234 (427)
9 3dxy_A TRNA (guanine-N(7)-)-me 9.1 44 0.0019 15.8 -0.5 27 45-71 125-151 (218)
10 1umq_A Photosynthetic apparatu 8.7 1E+02 0.0043 13.9 1.2 22 37-58 60-81 (81)
No 1
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=19.71 E-value=24 Score=17.28 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 775999986532000375653674169
Q gi|254781180|r 45 RRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71)
Q Consensus 45 rrdlqdrmakystrklkprgrvifadd 71 (71)
||-+|.....--.|.|||-|.+.|+.|
T Consensus 128 rRl~~~~~l~~i~r~LkpgG~l~i~TD 154 (213)
T 2fca_A 128 RRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp GSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 654218999999983799988999979
No 2
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=16.86 E-value=37 Score=16.22 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 6775999986532000375653674169
Q gi|254781180|r 44 ERRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71)
Q Consensus 44 errdlqdrmakystrklkprgrvifadd 71 (71)
.||-++....+--.|.|||-|.+.|+.|
T Consensus 130 krRli~~~fl~~~~r~LkpgG~l~i~TD 157 (214)
T 1yzh_A 130 KRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp GGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 1553107899999997488988999968
No 3
>2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.32 E-value=34 Score=16.44 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHCCCCCCCEEECC
Q ss_conf 3200037565367416
Q gi|254781180|r 55 YSTRKLKPRGRVIFAD 70 (71)
Q Consensus 55 ystrklkprgrvifad 70 (71)
---|-|||-|++++.+
T Consensus 89 e~~rvLKPgG~~~~~~ 104 (182)
T 2yui_A 89 EIARILRPGGCLFLKE 104 (182)
T ss_dssp HHHHHBCTTSCCEEEE
T ss_pred HHHHHHCCCEEEEEEE
T ss_conf 9999706886999983
No 4
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=15.66 E-value=21 Score=17.56 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 6775999986532000375653674169
Q gi|254781180|r 44 ERRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71)
Q Consensus 44 errdlqdrmakystrklkprgrvifadd 71 (71)
.||-+|......-.|.|||.|++.|+.|
T Consensus 142 krRl~~~~fl~~~~r~LkpgG~l~i~TD 169 (235)
T 3ckk_A 142 KWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp ---CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 1432157799999985688988999989
No 5
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=11.65 E-value=47 Score=15.68 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.0
Q ss_pred HHHHC-CCCCCCEEE
Q ss_conf 32000-375653674
Q gi|254781180|r 55 YSTRK-LKPRGRVIF 68 (71)
Q Consensus 55 ystrk-lkprgrvif 68 (71)
.|+|| ++|+||.-|
T Consensus 36 ms~RKIa~Pk~k~af 50 (51)
T 1un0_C 36 MNRRKIAMPKRRMAF 50 (51)
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 865231165543356
No 6
>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
Probab=11.37 E-value=1e+02 Score=13.91 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Q ss_conf 098866578862-71367759999865320
Q gi|254781180|r 29 TVDQINNAIASL-IPEERRDLQDRMAKYST 57 (71)
Q Consensus 29 tvdqinnaiasl-ipeerrdlqdrmakyst 57 (71)
.++++...+... -++++..|++|+||.|-
T Consensus 172 Ri~~Lk~~l~~~~~~~~~~~L~eRlakLsG 201 (203)
T 1kid_A 172 RVAQIRQQIEEATSDYDREKLQERVAKLAG 201 (203)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999986899999999999998737
No 7
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=10.96 E-value=1e+02 Score=13.83 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 10010988665788627136775999986532000
Q gi|254781180|r 25 PQKVTVDQINNAIASLIPEERRDLQDRMAKYSTRK 59 (71)
Q Consensus 25 pqkvtvdqinnaiaslipeerrdlqdrmakystrk 59 (71)
---||..++. .+|.||.-.-+..||..|+--.
T Consensus 23 KpyVT~~dLr---~~L~peqaeYci~~M~~y~~~~ 54 (75)
T 1h8b_A 23 KPYILAEELR---RELPPDQAQYCIKRMPAYSGPG 54 (75)
T ss_dssp CSSBCHHHHH---HHSCHHHHHHHHHHSCSCCCSS
T ss_pred CCCCCHHHHH---HHCCHHHHHHHHHHCCCCCCCC
T ss_conf 9811899999---6579999999999684557999
No 8
>1tvk_B Tubulin beta chain; epothilone, taxol, ligand interactions, cell cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* 2hxf_B* 2hxh_B* 2p4n_B* 2wbe_B* 3dco_B* 3edl_B* 1z2b_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* ...
Probab=9.33 E-value=73 Score=14.64 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCHHCCCCCCCCCCCHHHHHHHC----CCCCCHHHHHHHHHHHCC
Q ss_conf 50110445422224201100016----100109886657886271
Q gi|254781180|r 2 HSIHQSTNSCDLVNNEQLTEIEE----PQKVTVDQINNAIASLIP 42 (71)
Q Consensus 2 hsihqstnscdlvnneqlteiee----pqkvtvdqinnaiaslip 42 (71)
+.+.+..+.+-++.|+.|..|-. -..++.+.+|+.||..+.
T Consensus 190 ~~l~e~sd~ii~~~NdaL~~ic~~~~~~~~~~~~~~N~via~~ls 234 (427)
T 1tvk_B 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMS 234 (427)
T ss_dssp HHHTTTCSCEECEETTHHHHHHHTSSCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 999970883599228999999998627899985787898887620
No 9
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A*
Probab=9.13 E-value=44 Score=15.83 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 775999986532000375653674169
Q gi|254781180|r 45 RRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71)
Q Consensus 45 rrdlqdrmakystrklkprgrvifadd 71 (71)
||=+|.....--.+.|||.|++.|+.|
T Consensus 125 rRlv~~~fl~~l~~~Lk~gG~l~l~TD 151 (218)
T 3dxy_A 125 RRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp GSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 255615589999986288989999979
No 10
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=8.69 E-value=1e+02 Score=13.86 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8862713677599998653200
Q gi|254781180|r 37 IASLIPEERRDLQDRMAKYSTR 58 (71)
Q Consensus 37 iaslipeerrdlqdrmakystr 58 (71)
-|..+--.|+.|..+|.||..|
T Consensus 60 AAr~LGIsR~TLyrklkky~~R 81 (81)
T 1umq_A 60 TARRLNMHRRTLQRILAKRSPR 81 (81)
T ss_dssp HHHHHTSCHHHHHHHHHTSSCC
T ss_pred HHHHHCCCHHHHHHHHHHCCCC
T ss_conf 9999798999999999972899
Done!