Query gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:35:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781180.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1yzha1 c.66.1.53 (A:8-211) tR 20.7 16 0.0011 17.0 1.0 28 44-71 120-147 (204) 2 d1tubb1 c.32.1.1 (B:1-245) Tub 18.9 15 0.0011 17.1 0.6 41 2-42 190-234 (243) 3 d2fcaa1 c.66.1.53 (A:10-213) t 18.7 15 0.0011 17.1 0.6 27 45-71 119-145 (204) 4 d1in4a1 a.4.5.11 (A:255-329) H 18.4 26 0.0019 15.8 1.7 35 35-69 26-64 (75) 5 d1tuba1 c.32.1.1 (A:1-245) Tub 14.7 21 0.0016 16.2 0.6 41 2-42 192-236 (245) 6 d1ixsb1 a.4.5.11 (B:243-318) H 14.1 35 0.0026 15.1 1.5 34 35-68 26-63 (76) 7 d2btoa1 c.32.1.1 (A:3-246) Tub 13.3 25 0.0019 15.8 0.6 41 2-42 192-236 (244) 8 d1u2ca2 d.272.1.1 (A:179-303) 12.9 16 0.0012 16.9 -0.4 26 33-58 15-40 (125) 9 d1kida_ c.8.5.1 (A:) GroEL, A 10.5 62 0.0045 13.7 3.1 29 29-57 162-191 (193) 10 d1v82a_ c.68.1.7 (A:) Beta-1,3 10.2 64 0.0046 13.7 2.2 26 46-71 84-114 (252) No 1 >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Probab=20.70 E-value=16 Score=16.97 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEECCC Q ss_conf 6775999986532000375653674169 Q gi|254781180|r 44 ERRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71) Q Consensus 44 errdlqdrmakystrklkprgrvifadd 71 (71) .||-++.....--.|.|||-|.+.|+.| T Consensus 120 krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204) T d1yzha1 120 KRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204) T ss_dssp GGSTTSHHHHHHHHHHSCTTCEEEEEES T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 1566378899999973887748999978 No 2 >d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Probab=18.88 E-value=15 Score=17.07 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.6 Q ss_pred CCHHCCCCCCCCCCCHHHHHHHCC----CCCCHHHHHHHHHHHCC Q ss_conf 501104454222242011000161----00109886657886271 Q gi|254781180|r 2 HSIHQSTNSCDLVNNEQLTEIEEP----QKVTVDQINNAIASLIP 42 (71) Q Consensus 2 hsihqstnscdlvnneqlteieep----qkvtvdqinnaiaslip 42 (71) +.+.+..+.+=++.|+.|-+|-.- .+++.+.+|+-||..+. T Consensus 190 ~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls 234 (243) T d1tubb1 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMS 234 (243) T ss_dssp HHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHH T ss_pred HHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 889862886899457999999998638999998999999999997 No 3 >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Probab=18.71 E-value=15 Score=17.09 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEECCC Q ss_conf 775999986532000375653674169 Q gi|254781180|r 45 RRDLQDRMAKYSTRKLKPRGRVIFADD 71 (71) Q Consensus 45 rrdlqdrmakystrklkprgrvifadd 71 (71) ||-++....+--.|.|||.|.+.++.| T Consensus 119 ~Rl~~~~~l~~~~r~LkpgG~l~i~TD 145 (204) T d2fcaa1 119 RRLTYSHFLKKYEEVMGKGGSIHFKTD 145 (204) T ss_dssp GSTTSHHHHHHHHHHHTTSCEEEEEES T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 344378899999984797767999988 No 4 >d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Probab=18.41 E-value=26 Score=15.82 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=27.1 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHH----CCCCCCCEEEC Q ss_conf 578862713677599998653200----03756536741 Q gi|254781180|r 35 NAIASLIPEERRDLQDRMAKYSTR----KLKPRGRVIFA 69 (71) Q Consensus 35 naiaslipeerrdlqdrmakystr----klkprgrvifa 69 (71) ++||+.+-|++..+.|-.--|--+ .-.||||++-. T Consensus 26 ~tlAa~l~e~~~TiEdviEPyLiq~G~i~RTpRGR~~T~ 64 (75) T d1in4a1 26 NALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 64 (75) T ss_dssp HHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 999999868751899983479999607754896387689 No 5 >d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Probab=14.74 E-value=21 Score=16.24 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=28.5 Q ss_pred CCHHCCCCCCCCCCCHHHHHHHC----CCCCCHHHHHHHHHHHCC Q ss_conf 50110445422224201100016----100109886657886271 Q gi|254781180|r 2 HSIHQSTNSCDLVNNEQLTEIEE----PQKVTVDQINNAIASLIP 42 (71) Q Consensus 2 hsihqstnscdlvnneqlteiee----pqkvtvdqinnaiaslip 42 (71) +++.++.+.+-+..|+.|.+|-. -.+++.+.+|+-||..+. T Consensus 192 ~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls 236 (245) T d1tuba1 192 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 236 (245) T ss_dssp HHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHH T ss_pred HHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 889861880489413999999998558999998999999999997 No 6 >d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Probab=14.06 E-value=35 Score=15.05 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=26.1 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHH----CCCCCCCEEE Q ss_conf 578862713677599998653200----0375653674 Q gi|254781180|r 35 NAIASLIPEERRDLQDRMAKYSTR----KLKPRGRVIF 68 (71) Q Consensus 35 naiaslipeerrdlqdrmakystr----klkprgrvif 68 (71) ++||+.+-|++..+.|-.--|--+ +-.||||++- T Consensus 26 ~tlA~~lgE~~~TiEdviEPyLiq~G~i~RTprGR~~T 63 (76) T d1ixsb1 26 ATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 63 (76) T ss_dssp HHHHGGGSSCTTHHHHTSHHHHHHTTSEEECSSSEEEC T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99999983875288887148999970786589728868 No 7 >d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Probab=13.32 E-value=25 Score=15.83 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=26.8 Q ss_pred CCHHCCCCCCCCCCCHHHHHHHC----CCCCCHHHHHHHHHHHCC Q ss_conf 50110445422224201100016----100109886657886271 Q gi|254781180|r 2 HSIHQSTNSCDLVNNEQLTEIEE----PQKVTVDQINNAIASLIP 42 (71) Q Consensus 2 hsihqstnscdlvnneqlteiee----pqkvtvdqinnaiaslip 42 (71) +.+.+..+.+-++.|+.|-+|-. ..+++.+.+|+-||..+. T Consensus 192 ~~L~e~sD~~~~~dN~al~~i~~~~~~~~~~s~~~lN~~Ia~~ls 236 (244) T d2btoa1 192 NTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALA 236 (244) T ss_dssp HHHHHTCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHH T ss_pred HHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 999850966999426999999998638999998999999999997 No 8 >d1u2ca2 d.272.1.1 (A:179-303) Dystroglycan, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=12.94 E-value=16 Score=16.86 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=20.4 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 66578862713677599998653200 Q gi|254781180|r 33 INNAIASLIPEERRDLQDRMAKYSTR 58 (71) Q Consensus 33 innaiaslipeerrdlqdrmakystr 58 (71) +.-.+-.|-|.+|-+|-.+||+|+-- T Consensus 15 ldad~~~l~p~~Rv~ll~~lA~f~~l 40 (125) T d1u2ca2 15 LDADLTKMTPKQRIDLLNRMQSFSEV 40 (125) T ss_dssp ESCCGGGSCHHHHHHHHHHHHHHHCS T ss_pred ECCCHHHCCHHHHHHHHHHHHHHHCC T ss_conf 71882458988999999999987588 No 9 >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Probab=10.46 E-value=62 Score=13.73 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHH-CCHHHHHHHHHHHHHHH Q ss_conf 098866578862-71367759999865320 Q gi|254781180|r 29 TVDQINNAIASL-IPEERRDLQDRMAKYST 57 (71) Q Consensus 29 tvdqinnaiasl-ipeerrdlqdrmakyst 57 (71) .+.+|...+... -++++..|++|+||.|- T Consensus 162 Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG 191 (193) T d1kida_ 162 RVAQIRQQIEEATSDYDREKLQERVAKLAG 191 (193) T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC T ss_conf 999999999986899999999999998747 No 10 >d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]} Probab=10.18 E-value=64 Score=13.68 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHC-----CCCCCCEEECCC Q ss_conf 75999986532000-----375653674169 Q gi|254781180|r 46 RDLQDRMAKYSTRK-----LKPRGRVIFADD 71 (71) Q Consensus 46 rdlqdrmakystrk-----lkprgrvifadd 71 (71) ...|-.+|-.--|+ -+-.|-|.|||| T Consensus 84 g~~qRn~aL~~iR~~~~~~~~~~GVVyFADD 114 (252) T d1v82a_ 84 GTMQRNLALRWLRETFPRNSSQPGVVYFADD 114 (252) T ss_dssp THHHHHHHHHHHHHHSCTTCCCCEEEEECCT T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 5888999999998743424686669999048 Done!