Query         gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:35:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781180.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1yzha1 c.66.1.53 (A:8-211) tR  20.7      16  0.0011   17.0   1.0   28   44-71    120-147 (204)
  2 d1tubb1 c.32.1.1 (B:1-245) Tub  18.9      15  0.0011   17.1   0.6   41    2-42    190-234 (243)
  3 d2fcaa1 c.66.1.53 (A:10-213) t  18.7      15  0.0011   17.1   0.6   27   45-71    119-145 (204)
  4 d1in4a1 a.4.5.11 (A:255-329) H  18.4      26  0.0019   15.8   1.7   35   35-69     26-64  (75)
  5 d1tuba1 c.32.1.1 (A:1-245) Tub  14.7      21  0.0016   16.2   0.6   41    2-42    192-236 (245)
  6 d1ixsb1 a.4.5.11 (B:243-318) H  14.1      35  0.0026   15.1   1.5   34   35-68     26-63  (76)
  7 d2btoa1 c.32.1.1 (A:3-246) Tub  13.3      25  0.0019   15.8   0.6   41    2-42    192-236 (244)
  8 d1u2ca2 d.272.1.1 (A:179-303)   12.9      16  0.0012   16.9  -0.4   26   33-58     15-40  (125)
  9 d1kida_ c.8.5.1 (A:) GroEL, A   10.5      62  0.0045   13.7   3.1   29   29-57    162-191 (193)
 10 d1v82a_ c.68.1.7 (A:) Beta-1,3  10.2      64  0.0046   13.7   2.2   26   46-71     84-114 (252)

No 1  
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.70  E-value=16  Score=16.97  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf             6775999986532000375653674169
Q gi|254781180|r   44 ERRDLQDRMAKYSTRKLKPRGRVIFADD   71 (71)
Q Consensus        44 errdlqdrmakystrklkprgrvifadd   71 (71)
                      .||-++.....--.|.|||-|.+.|+.|
T Consensus       120 krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         120 KRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             GGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             1566378899999973887748999978


No 2  
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=18.88  E-value=15  Score=17.07  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CCHHCCCCCCCCCCCHHHHHHHCC----CCCCHHHHHHHHHHHCC
Q ss_conf             501104454222242011000161----00109886657886271
Q gi|254781180|r    2 HSIHQSTNSCDLVNNEQLTEIEEP----QKVTVDQINNAIASLIP   42 (71)
Q Consensus         2 hsihqstnscdlvnneqlteieep----qkvtvdqinnaiaslip   42 (71)
                      +.+.+..+.+=++.|+.|-+|-.-    .+++.+.+|+-||..+.
T Consensus       190 ~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls  234 (243)
T d1tubb1         190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMS  234 (243)
T ss_dssp             HHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             889862886899457999999998638999998999999999997


No 3  
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=18.71  E-value=15  Score=17.09  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf             775999986532000375653674169
Q gi|254781180|r   45 RRDLQDRMAKYSTRKLKPRGRVIFADD   71 (71)
Q Consensus        45 rrdlqdrmakystrklkprgrvifadd   71 (71)
                      ||-++....+--.|.|||.|.+.++.|
T Consensus       119 ~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         119 RRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             GSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             344378899999984797767999988


No 4  
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=18.41  E-value=26  Score=15.82  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=27.1

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHH----CCCCCCCEEEC
Q ss_conf             578862713677599998653200----03756536741
Q gi|254781180|r   35 NAIASLIPEERRDLQDRMAKYSTR----KLKPRGRVIFA   69 (71)
Q Consensus        35 naiaslipeerrdlqdrmakystr----klkprgrvifa   69 (71)
                      ++||+.+-|++..+.|-.--|--+    .-.||||++-.
T Consensus        26 ~tlAa~l~e~~~TiEdviEPyLiq~G~i~RTpRGR~~T~   64 (75)
T d1in4a1          26 NALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE   64 (75)
T ss_dssp             HHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             999999868751899983479999607754896387689


No 5  
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.74  E-value=21  Score=16.24  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CCHHCCCCCCCCCCCHHHHHHHC----CCCCCHHHHHHHHHHHCC
Q ss_conf             50110445422224201100016----100109886657886271
Q gi|254781180|r    2 HSIHQSTNSCDLVNNEQLTEIEE----PQKVTVDQINNAIASLIP   42 (71)
Q Consensus         2 hsihqstnscdlvnneqlteiee----pqkvtvdqinnaiaslip   42 (71)
                      +++.++.+.+-+..|+.|.+|-.    -.+++.+.+|+-||..+.
T Consensus       192 ~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls  236 (245)
T d1tuba1         192 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS  236 (245)
T ss_dssp             HHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             889861880489413999999998558999998999999999997


No 6  
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=14.06  E-value=35  Score=15.05  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=26.1

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHH----CCCCCCCEEE
Q ss_conf             578862713677599998653200----0375653674
Q gi|254781180|r   35 NAIASLIPEERRDLQDRMAKYSTR----KLKPRGRVIF   68 (71)
Q Consensus        35 naiaslipeerrdlqdrmakystr----klkprgrvif   68 (71)
                      ++||+.+-|++..+.|-.--|--+    +-.||||++-
T Consensus        26 ~tlA~~lgE~~~TiEdviEPyLiq~G~i~RTprGR~~T   63 (76)
T d1ixsb1          26 ATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT   63 (76)
T ss_dssp             HHHHGGGSSCTTHHHHTSHHHHHHTTSEEECSSSEEEC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999983875288887148999970786589728868


No 7  
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=13.32  E-value=25  Score=15.83  Aligned_cols=41  Identities=24%  Similarity=0.482  Sum_probs=26.8

Q ss_pred             CCHHCCCCCCCCCCCHHHHHHHC----CCCCCHHHHHHHHHHHCC
Q ss_conf             50110445422224201100016----100109886657886271
Q gi|254781180|r    2 HSIHQSTNSCDLVNNEQLTEIEE----PQKVTVDQINNAIASLIP   42 (71)
Q Consensus         2 hsihqstnscdlvnneqlteiee----pqkvtvdqinnaiaslip   42 (71)
                      +.+.+..+.+-++.|+.|-+|-.    ..+++.+.+|+-||..+.
T Consensus       192 ~~L~e~sD~~~~~dN~al~~i~~~~~~~~~~s~~~lN~~Ia~~ls  236 (244)
T d2btoa1         192 NTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALA  236 (244)
T ss_dssp             HHHHHTCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             999850966999426999999998638999998999999999997


No 8  
>d1u2ca2 d.272.1.1 (A:179-303) Dystroglycan, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.94  E-value=16  Score=16.86  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=20.4

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             66578862713677599998653200
Q gi|254781180|r   33 INNAIASLIPEERRDLQDRMAKYSTR   58 (71)
Q Consensus        33 innaiaslipeerrdlqdrmakystr   58 (71)
                      +.-.+-.|-|.+|-+|-.+||+|+--
T Consensus        15 ldad~~~l~p~~Rv~ll~~lA~f~~l   40 (125)
T d1u2ca2          15 LDADLTKMTPKQRIDLLNRMQSFSEV   40 (125)
T ss_dssp             ESCCGGGSCHHHHHHHHHHHHHHHCS
T ss_pred             ECCCHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             71882458988999999999987588


No 9  
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=10.46  E-value=62  Score=13.73  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Q ss_conf             098866578862-71367759999865320
Q gi|254781180|r   29 TVDQINNAIASL-IPEERRDLQDRMAKYST   57 (71)
Q Consensus        29 tvdqinnaiasl-ipeerrdlqdrmakyst   57 (71)
                      .+.+|...+... -++++..|++|+||.|-
T Consensus       162 Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG  191 (193)
T d1kida_         162 RVAQIRQQIEEATSDYDREKLQERVAKLAG  191 (193)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             999999999986899999999999998747


No 10 
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1,  GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.18  E-value=64  Score=13.68  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHC-----CCCCCCEEECCC
Q ss_conf             75999986532000-----375653674169
Q gi|254781180|r   46 RDLQDRMAKYSTRK-----LKPRGRVIFADD   71 (71)
Q Consensus        46 rdlqdrmakystrk-----lkprgrvifadd   71 (71)
                      ...|-.+|-.--|+     -+-.|-|.||||
T Consensus        84 g~~qRn~aL~~iR~~~~~~~~~~GVVyFADD  114 (252)
T d1v82a_          84 GTMQRNLALRWLRETFPRNSSQPGVVYFADD  114 (252)
T ss_dssp             THHHHHHHHHHHHHHSCTTCCCCEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             5888999999998743424686669999048


Done!