RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) >1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} (A:) Length = 118 Score = 25.5 bits (56), Expect = 2.5 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%) Query: 40 LIPEERRDLQDRMAKYSTRKLK 61 + P + LQ M YST+K+ Sbjct: 8 ISPSDFAQLQKYME-YSTKKVS 28 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* (A:181-381) Length = 201 Score = 24.5 bits (52), Expect = 4.8 Identities = 5/39 (12%), Positives = 12/39 (30%) Query: 33 INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFADD 71 + N + D+ + +L+P G + Sbjct: 123 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 161 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E (E:) Length = 246 Score = 24.3 bits (51), Expect = 5.9 Identities = 6/27 (22%), Positives = 9/27 (33%) Query: 45 RRDLQDRMAKYSTRKLKPRGRVIFADD 71 R + + + LK G V D Sbjct: 148 ARIITNTLLSEYAYVLKEGGVVYTITD 174 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.129 0.353 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 488,375 Number of extensions: 16688 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 8 Length of query: 71 Length of database: 4,956,049 Length adjustment: 38 Effective length of query: 33 Effective length of database: 3,671,459 Effective search space: 121158147 Effective search space used: 121158147 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.8 bits)