RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781180|ref|YP_003065593.1| hypothetical protein
CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc,
          structural genomics, PSI, protein structure initiative;
          NMR {Homo sapiens} (A:)
          Length = 118

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 40 LIPEERRDLQDRMAKYSTRKLK 61
          + P +   LQ  M  YST+K+ 
Sbjct: 8  ISPSDFAQLQKYME-YSTKKVS 28


>3dmg_A Probable ribosomal RNA small subunit methyltransferase;
           monomethyltranserase, 16S rRNA methyltransferase, N2
           G1207 methyltransferase; HET: SAH; 1.55A {Thermus
           thermophilus} PDB: 3dmf_A* 3dmh_A* (A:181-381)
          Length = 201

 Score = 24.5 bits (52), Expect = 4.8
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 33  INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFADD 71
           + N    +      D+       +  +L+P G      +
Sbjct: 123 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 161


>2vdv_E TRNA (guanine-N(7)-)-methyltransferase;
           S-adenosyl-L-methionine, phosphorylation, M7G, spout MT,
           tRNA processing; HET: SAM; 2.30A {Saccharomyces
           cerevisiae} PDB: 2vdu_E (E:)
          Length = 246

 Score = 24.3 bits (51), Expect = 5.9
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 45  RRDLQDRMAKYSTRKLKPRGRVIFADD 71
            R + + +       LK  G V    D
Sbjct: 148 ARIITNTLLSEYAYVLKEGGVVYTITD 174


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 488,375
Number of extensions: 16688
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 8
Length of query: 71
Length of database: 4,956,049
Length adjustment: 38
Effective length of query: 33
Effective length of database: 3,671,459
Effective search space: 121158147
Effective search space used: 121158147
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.8 bits)