RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 Score = 26.3 bits (57), Expect = 1.6 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 4/38 (10%) Query: 33 INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFAD 70 + +A + + + + + P G V F D Sbjct: 113 FAHWLAHVPDDRFEAFWESVR----SAVAPGGVVEFVD 146 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 Score = 25.3 bits (55), Expect = 3.2 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%) Query: 42 PEERRDLQDRMAKYSTRKLKPRGRVIFAD 70 + R D M + L P G ++F Sbjct: 130 MTQMRTAIDNMV----KMLAPGGHLVFGS 154 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 Score = 25.3 bits (54), Expect = 3.5 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 33 INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFAD 70 A L +E+ + + + L G+++FAD Sbjct: 112 STYAFHHLTDDEKNVAIAKYS----QLLNKGGKIVFAD 145 >3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Score = 24.5 bits (53), Expect = 5.9 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 36 AIASLIP-EERRDLQDRMAKYSTRKLKPR 63 A+ L+P +E +L + + + + L P Sbjct: 10 AVDRLLPSQEAAELIELTREIADKVLDPI 38 >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 Score = 23.9 bits (51), Expect = 8.2 Identities = 5/22 (22%), Positives = 11/22 (50%) Query: 30 VDQINNAIASLIPEERRDLQDR 51 + +N A+ S+ +E + R Sbjct: 228 MSILNKALYSISNDELASIISR 249 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Length = 203 Score = 23.9 bits (52), Expect = 8.3 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 30 VDQINNAIA-SLIPEERRDLQDRMAKYS 56 V QI I + +R LQ+R+AK + Sbjct: 173 VAQIRQQIEEATSDYDREKLQERVAKLA 200 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.129 0.353 Gapped Lambda K H 0.267 0.0491 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 558,224 Number of extensions: 19402 Number of successful extensions: 108 Number of sequences better than 10.0: 1 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 10 Length of query: 71 Length of database: 5,693,230 Length adjustment: 41 Effective length of query: 30 Effective length of database: 4,699,226 Effective search space: 140976780 Effective search space used: 140976780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.6 bits)