RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781180|ref|YP_003065593.1| hypothetical protein
CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
           SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
          Length = 218

 Score = 26.3 bits (57), Expect = 1.6
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 4/38 (10%)

Query: 33  INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFAD 70
             + +A +  +      + +       + P G V F D
Sbjct: 113 FAHWLAHVPDDRFEAFWESVR----SAVAPGGVVEFVD 146


>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
           factor, fixation, symbiosis, alpha/beta structure; HET:
           SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
          Length = 216

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 42  PEERRDLQDRMAKYSTRKLKPRGRVIFAD 70
             + R   D M     + L P G ++F  
Sbjct: 130 MTQMRTAIDNMV----KMLAPGGHLVFGS 154


>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
           protein structure initiative; 2.80A {Bacillus
           thuringiensis serovarkonkukian}
          Length = 220

 Score = 25.3 bits (54), Expect = 3.5
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 33  INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFAD 70
              A   L  +E+     + +    + L   G+++FAD
Sbjct: 112 STYAFHHLTDDEKNVAIAKYS----QLLNKGGKIVFAD 145


>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
          infectious disease, S FAD, FADH, tuberculosis,
          oxidoredu; HET: FAD; 2.35A {Mycobacterium
          thermoresistibile}
          Length = 387

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 36 AIASLIP-EERRDLQDRMAKYSTRKLKPR 63
          A+  L+P +E  +L +   + + + L P 
Sbjct: 10 AVDRLLPSQEAAELIELTREIADKVLDPI 38


>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
           signaling protein; 2.04A {Bordetella pertussis} PDB:
           3mpl_A
          Length = 267

 Score = 23.9 bits (51), Expect = 8.2
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 30  VDQINNAIASLIPEERRDLQDR 51
           +  +N A+ S+  +E   +  R
Sbjct: 228 MSILNKALYSISNDELASIISR 249


>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding,
           phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1
           PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
          Length = 203

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30  VDQINNAIA-SLIPEERRDLQDRMAKYS 56
           V QI   I  +    +R  LQ+R+AK +
Sbjct: 173 VAQIRQQIEEATSDYDREKLQERVAKLA 200


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 558,224
Number of extensions: 19402
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 10
Length of query: 71
Length of database: 5,693,230
Length adjustment: 41
Effective length of query: 30
Effective length of database: 4,699,226
Effective search space: 140976780
Effective search space used: 140976780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)