BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781180|ref|YP_003065593.1| hypothetical protein
CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
(71 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 71
Score = 148 bits (373), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MHSIHQSTNSCDLVNNEQLTEIEEPQKVTVDQINNAIASLIPEERRDLQDRMAKYSTRKL 60
MHSIHQSTNSCDLVNNEQLTEIEEPQKVTVDQINNAIASLIPEERRDLQDRMAKYSTRKL
Sbjct: 1 MHSIHQSTNSCDLVNNEQLTEIEEPQKVTVDQINNAIASLIPEERRDLQDRMAKYSTRKL 60
Query: 61 KPRGRVIFADD 71
KPRGRVIFADD
Sbjct: 61 KPRGRVIFADD 71
>gi|254781181|ref|YP_003065594.1| hypothetical protein CLIBASIA_05440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 85
Score = 34.7 bits (78), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 26 QKVTVDQINNAIASLIPEERRDLQDR 51
QK+TVDQI+N+I L PE+R++L R
Sbjct: 46 QKLTVDQIDNSIMFLYPEQRQELAKR 71
>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 28.5 bits (62), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 23 EEPQKVTVDQINNAIASLIPEERRDLQDRM 52
+EP+K+ DQ+ +A+ L EE+++LQ ++
Sbjct: 22 DEPKKLNPDQLCDAVCRLTLEEQKELQTKV 51
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 21.2 bits (43), Expect = 3.0, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 13 LVNNEQLTEIEEPQKVTVDQINNAIASLIPEERRDLQDRMAKYSTR 58
L+ N + I Q + + IN A IP+E+R + ++++++ +R
Sbjct: 497 LLQNIKHNRILHEQNIIL-TINTANQPRIPKEKRFVCEKISEHFSR 541
>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
asiaticus str. psy62]
Length = 300
Score = 21.2 bits (43), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 26 QKVTVDQINNAIASLIPEERRDLQDRMAKYS 56
Q + V I+N + +I ERR +MA S
Sbjct: 77 QPLIVRAIDNGLYKIIAGERRFRAAKMASLS 107
>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 21.2 bits (43), Expect = 3.4, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 32 QINNAIASLIPE 43
++NNA+A LIP+
Sbjct: 229 KVNNAVAMLIPK 240
>gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 458
Score = 20.8 bits (42), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 19 LTEIEEPQKVTVDQINNAIASLIPEERR 46
LT+ + P K+T N++ + IP E +
Sbjct: 317 LTDSQSPTKLTYSTHNHSASCRIPYENK 344
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 20.0 bits (40), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 32 QINNAIASLIPEERRDLQDRM 52
+I +A L P+ERR+ RM
Sbjct: 513 RIETYVAVLTPQERREEIARM 533
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,303
Number of Sequences: 1233
Number of extensions: 1312
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space: 8033290
effective search space used: 8033290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 31 (16.5 bits)