RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781181|ref|YP_003065594.1| hypothetical protein
CLIBASIA_05440 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
          mutant T356D, lipid binding protein; 2.65A {Homo
          sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
          Length = 672

 Score = 29.4 bits (66), Expect = 0.19
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQE+ + YK  Y   LI 
Sbjct: 51 NRQRQEVCQSYKSLYGKDLIA 71



 Score = 28.7 bits (64), Expect = 0.30
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 62  PEQRQELAKRYKEKYNDVLIH 82
             QRQ++ + +K  +   L+ 
Sbjct: 394 NVQRQQIRQTFKSHFGRDLMT 414


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 0.19
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 11/35 (31%)

Query: 35 QKQAKSLANASQKLTVDQIDNSIMFLYPEQRQELA 69
          +KQA     AS KL  D  D++     P     LA
Sbjct: 18 EKQALKKLQASLKLYAD--DSA-----P----ALA 41


>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
          {Giardia intestinalis} PDB: 2iic_A
          Length = 310

 Score = 28.7 bits (64), Expect = 0.30
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
           E+R+EL  ++++      I 
Sbjct: 34 AEERKELRTQFQDTTGLEFIA 54


>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
          binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
          Length = 327

 Score = 28.4 bits (63), Expect = 0.36
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQ++AK +K ++   L  
Sbjct: 53 NTQRQQIAKSFKAQFGKDLTE 73


>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
          2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
          1ycn_A 2q4c_A 1dk5_A
          Length = 321

 Score = 28.0 bits (62), Expect = 0.47
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
           EQR  + K Y E Y + L+ 
Sbjct: 48 AEQRNLIRKTYAETYGEDLLK 68


>1axn_A Annexin III; annexin family; 1.78A {Homo sapiens} SCOP: a.65.1.1
          PDB: 1aii_A
          Length = 323

 Score = 27.6 bits (61), Expect = 0.61
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQ + K Y+  Y   L  
Sbjct: 50 NAQRQLIVKEYQAAYGKELKD 70


>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
          helix bundle, heparin, hexasaccharide, metal binding
          protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
          2hyu_A* 2hyw_A 1w7b_A 1xjl_A
          Length = 308

 Score = 27.7 bits (61), Expect = 0.66
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQ++A  Y+ +    L  
Sbjct: 34 NAQRQDIAFAYQRRTKKELAS 54


>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
          binding, matrix vessicle, protein and metal binding
          protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A
          1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A
          1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A
          1bcz_A 1n41_A 1bcw_A 2ran_A ...
          Length = 320

 Score = 27.2 bits (60), Expect = 1.00
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQE+A  +K  +   L+ 
Sbjct: 46 NAQRQEIASAFKTLFGRDLVD 66


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 64 QRQELAKRYKEKYNDVLIHL--PD 85
           R+ + KR   +  ++ I L  P+
Sbjct: 3  TRESIDKRAGRRGPNLNIVLTCPE 26


>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding
          protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
          Length = 337

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 3/21 (14%), Positives = 8/21 (38%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
          P Q + + + ++      L  
Sbjct: 41 PNQLRNMQRTFQAITGTFLDA 61


>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
          hexamerization switch E76, low calcium form; 1.93A
          {Hydra attenuata} SCOP: a.65.1.1 PDB: 1aei_A
          Length = 315

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 62 PEQRQELAKRYKEKYNDVLIH 82
            QRQ++   Y   +   L  
Sbjct: 44 NAQRQQIKTDYTTLFGKHLED 64


>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
          multifunctional enzyme, lyase, polymorphism,
          decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
          sapiens}
          Length = 205

 Score = 24.8 bits (54), Expect = 5.3
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 53 IDNSIMFLYPEQRQELAKRYKEKYNDVLI 81
          ID   +   P    ++A    +   +  I
Sbjct: 33 IDLRGIVSRPRLLSQVADILFQTAQNAGI 61


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 6/21 (28%)

Query: 2   HQPS--FL----VSYPLVAVV 16
           + P   +L    +S PL+ V+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVI 244



 Score = 24.5 bits (53), Expect = 6.5
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 24/77 (31%)

Query: 5   SFLVSYP---LVAVVIRLILKNFGCPL----------KRIVKVQKQ---------AKSLA 42
           + +VS P   L  +   L L+    P           +R +K   +         +  L 
Sbjct: 376 NLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433

Query: 43  NASQKLTVDQIDNSIMF 59
            AS  +  D + N++ F
Sbjct: 434 PASDLINKDLVKNNVSF 450


>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
           1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
           1o61_A*
          Length = 394

 Score = 24.4 bits (52), Expect = 6.8
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 63  EQRQELAKRYKEKYNDVLIHLP 84
            +++E+ + YKE   +    L 
Sbjct: 250 LKKREIYEWYKEFLGEYFSFLD 271


>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
           horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A*
          Length = 416

 Score = 24.1 bits (52), Expect = 8.5
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 38  AKSLANASQKLTVDQIDNSIMFLYPEQRQELAKRYKEKYNDVL-IHLP 84
            K+  NA Q     ++   +  LY    +E +K       D + +H P
Sbjct: 88  TKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDP 135


>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
           emerald biostructures, glycolysis, lyase, structural
           genomics; HET: CIT; 2.10A {Babesia bovis}
          Length = 379

 Score = 24.1 bits (52), Expect = 8.9
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 12/48 (25%)

Query: 31  IVKVQKQAKSLANASQKLTVDQIDNSIMFLYPEQRQELAKRYKEKYND 78
            +KV K   ++ N  ++++   +D             LA+R ++ YN 
Sbjct: 123 GIKVDKGLVTIPNTDEEVSTTGLDG------------LAERCQKYYNA 158


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 672,450
Number of extensions: 23648
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 30
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)