Query         gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs    102 out of 125
Neff          4.9 
Searched_HMMs 13730
Date          Wed Jun  1 11:41:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781182.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3c8ga1 a.285.1.1 (A:1-168) Pu  94.3   0.083   6E-06   28.7   7.0   49   13-61     63-114 (168)
  2 d3brja1 a.285.1.1 (A:6-172) Ma  93.9   0.041   3E-06   30.5   4.7   51   13-63     58-111 (167)
  3 d1o3ua_ a.24.16.3 (A:) Hypothe  63.5     4.7 0.00034   18.5   5.6   64   10-73     47-119 (126)
  4 d1wtya_ a.24.16.2 (A:) Probabl  44.7     9.7 0.00071   16.7   5.7   51   13-67     51-101 (116)
  5 d1ufba_ a.24.16.3 (A:) Hypothe  41.5      11 0.00079   16.4   5.6   64   10-73     51-123 (127)
  6 d2j9ga2 c.30.1.1 (A:1-114) Bio  24.6      19  0.0014   15.0   2.1   22   34-55     63-84  (114)
  7 d1w96a2 c.30.1.1 (A:14-183) Ac  18.8      26  0.0019   14.2   1.8   22   33-54    117-138 (170)
  8 d1joga_ a.24.16.2 (A:) Hypothe  17.0      31  0.0023   13.7   9.0   49   14-66     71-119 (135)
  9 d1ulza2 c.30.1.1 (A:1-114) Bio  16.8      31  0.0023   13.7   1.9   22   34-55     62-83  (114)
 10 d2hzta1 a.4.5.69 (A:4-98) Puta  14.8      28   0.002   14.0   1.2   18   15-32     40-57  (95)

No 1  
>d3c8ga1 a.285.1.1 (A:1-168) Putative transcriptional regulator YggD {Shigella flexneri [TaxId: 623]}
Probab=94.31  E-value=0.083  Score=28.71  Aligned_cols=49  Identities=2%  Similarity=-0.157  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHH
Q ss_conf             44889999999998689998999999999997313206888---89899999
Q gi|254781182|r   13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDE   61 (94)
Q Consensus        13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~   61 (94)
                      +-|+++-||+.++.=|+|++...+-++.+|...|..+|.++   |+.+....
T Consensus        63 PLg~~svrikL~~~LG~Is~~~y~Di~~~~~irn~~~h~~~~~~F~dd~i~~  114 (168)
T d3c8ga1          63 PLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLNEQDETPGFADDITWD  114 (168)
T ss_dssp             TTCSHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCCCTTSHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             8346999999999948898899988999999999985488778978689999


No 2  
>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]}
Probab=93.90  E-value=0.041  Score=30.50  Aligned_cols=51  Identities=16%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHH
Q ss_conf             44889999999998689998999999999997313206888---8989999999
Q gi|254781182|r   13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECL   63 (94)
Q Consensus        13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll   63 (94)
                      +-|+++-||+.++.=|+|++...+-++.+|...|..+|+++   |+-+....-+
T Consensus        58 PLg~~svrlkL~y~LG~Is~~~y~Di~~~~~irn~l~h~~~~~~F~d~~i~~~i  111 (167)
T d3brja1          58 PLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPI  111 (167)
T ss_dssp             TTCSHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHTCSSCCCTTSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             824689999999994778889998899999999998448877896778999999


No 3  
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]}
Probab=63.49  E-value=4.7  Score=18.50  Aligned_cols=64  Identities=11%  Similarity=-0.041  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHHHHHHH
Q ss_conf             96544889999999998689998999999999997313206888---------89899999999999999999
Q gi|254781182|r   10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---------SSIEESDECLEFVNLFCDIV   73 (94)
Q Consensus        10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---------~~~edA~~ll~f~~~il~~~   73 (94)
                      ..|++-++...++.|....-.+..+.+.+..+....-..-.++.         ++.++|..+++.+..|+.++
T Consensus        47 ~~pk~H~l~~Ll~~l~~~~~~~~~~~~~~~~L~~~yi~~RYP~~~~~~~P~~~y~~~~Ae~al~~a~~vl~~v  119 (126)
T d1o3ua_          47 AQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFC  119 (126)
T ss_dssp             CCCCCSSHHHHHHHHTTTSCCCHHHHHHHHHHHSCC------CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9987779999999998765211799999999987665053887556777301289999999999999999999


No 4  
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=44.73  E-value=9.7  Score=16.68  Aligned_cols=51  Identities=14%  Similarity=0.077  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             4488999999999868999899999999999731320688889899999999999
Q gi|254781182|r   13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN   67 (94)
Q Consensus        13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~~   67 (94)
                      .+++.-+-++..+..|+|+.. ..|++.+.. .|..+|...  .+-|..++..+.
T Consensus        51 ~~~spr~~~r~A~~~glI~d~-~~W~~m~~~-RN~tsHtYd--e~~A~~i~~~i~  101 (116)
T d1wtya_          51 EARSPRAAIRGAFQVGLLPED-PFWLEMLEL-RNLTNHTYD--EALAERIYAELP  101 (116)
T ss_dssp             CCSSHHHHHHHHHHHTSSCCC-HHHHHHHHH-HHHGGGTTS--HHHHHHHHTTHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHHHCHHCC--HHHHHHHHHHHH
T ss_conf             557879999999886988988-999999998-523011057--999999999999


No 5  
>d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]}
Probab=41.52  E-value=11  Score=16.38  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             965448899999999986899989999999999973132068---------8889899999999999999999
Q gi|254781182|r   10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE---------GQSSIEESDECLEFVNLFCDIV   73 (94)
Q Consensus        10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~---------g~~~~edA~~ll~f~~~il~~~   73 (94)
                      .+|++-++...+..|....-++..+.+.+..+....-.+-=+         ..++.++|..+++.++-|+.++
T Consensus        51 ~~pktH~l~~L~~~l~~~~~~~~~~~~~~~~L~~~y~~~RYP~~~~~~~p~~~y~~e~a~~ai~~a~~v~~~v  123 (127)
T d1ufba_          51 QVAWGHSILDLLADLPEDVDVPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRLEAEEALDLAQKILAFV  123 (127)
T ss_dssp             CCCCSSCHHHHHHTSCTTSCCCHHHHHHHHHHHTTSSTTTCGGGSSSSCGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8888878999999998866686678999999999787501898756688534589999999999999999999


No 6  
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.58  E-value=19  Score=14.97  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999731320688889
Q gi|254781182|r   34 IFEWSNFVRIEGNKAVHEGQSS   55 (94)
Q Consensus        34 i~~~~~~~R~~gN~a~H~g~~~   55 (94)
                      +..+....+..|-+|+|+|++-
T Consensus        63 ~~~Ii~~A~~~~~dAiHPGyGF   84 (114)
T d2j9ga2          63 IPAIISAAEITGAVAIHPGYGF   84 (114)
T ss_dssp             HHHHHHHHHHHTCSEEECCSST
T ss_pred             HHHHHHHHHHHCCCEEECCHHH
T ss_conf             8999999998478646424366


No 7  
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.76  E-value=26  Score=14.16  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999973132068888
Q gi|254781182|r   33 EIFEWSNFVRIEGNKAVHEGQS   54 (94)
Q Consensus        33 ~i~~~~~~~R~~gN~a~H~g~~   54 (94)
                      .+..+....+..|-+|+|+|++
T Consensus       117 n~~~II~~A~~~~~DAIHPGYG  138 (170)
T d1w96a2         117 NVDLIVDIAERADVDAVWAGWG  138 (170)
T ss_dssp             CHHHHHHHHHHTTCSEEECCSS
T ss_pred             HHHHHHHHHHHCCCCEEEECHH
T ss_conf             6999999998568788984605


No 8  
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=17.04  E-value=31  Score=13.75  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=35.6

Q ss_pred             CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             48899999999986899989999999999973132068888989999999999
Q gi|254781182|r   14 CGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV   66 (94)
Q Consensus        14 ~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~   66 (94)
                      +.+.-+-++.....|+|+. ...|++. +..+|..+|..  +.+.|..++..+
T Consensus        71 ~~spr~~~r~A~~~glI~d-~e~W~~~-~~~RN~tsHtY--de~~A~~i~~~i  119 (135)
T d1joga_          71 AYGFKDILREALRFGLIGD-MSKWVAY-RDMRNITSHTY--DQEKAMAVYAQI  119 (135)
T ss_dssp             SCCHHHHHHHHHHTTSCSC-HHHHHHH-HHHHTTGGGTT--SHHHHHHHHHTH
T ss_pred             CCCHHHHHHHHHHCCCCCC-HHHHHHH-HHHHCHHCCCC--CHHHHHHHHHHH
T ss_conf             3579999999998489888-9999999-99854303006--899999999999


No 9  
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=16.75  E-value=31  Score=13.71  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999731320688889
Q gi|254781182|r   34 IFEWSNFVRIEGNKAVHEGQSS   55 (94)
Q Consensus        34 i~~~~~~~R~~gN~a~H~g~~~   55 (94)
                      +..+....+..|-+|+|+|++-
T Consensus        62 ~~~Ii~~A~~~~~daihPGyGF   83 (114)
T d1ulza2          62 KQRIINLALEVGADAIHPGYGF   83 (114)
T ss_dssp             HHHHHHHHHHTTCCEEECCSST
T ss_pred             HHHHHHHHHHHCCCEEECCHHH
T ss_conf             7999999999699767633465


No 10 
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=14.81  E-value=28  Score=14.00  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=14.9

Q ss_pred             CCHHHHHHHHHHCCCCCH
Q ss_conf             889999999998689998
Q gi|254781182|r   15 GMLSDRTRYLKQHNLIIE   32 (94)
Q Consensus        15 g~l~dri~~L~~~g~I~~   32 (94)
                      .+|++|++.|...|+|..
T Consensus        40 ~~Ls~rLk~Le~~glv~r   57 (95)
T d2hzta1          40 KMLTQQLRELEADGVINR   57 (95)
T ss_dssp             HHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             589999999999687730


Done!