Query gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 102 out of 125 Neff 4.9 Searched_HMMs 13730 Date Wed Jun 1 11:41:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781182.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3c8ga1 a.285.1.1 (A:1-168) Pu 94.3 0.083 6E-06 28.7 7.0 49 13-61 63-114 (168) 2 d3brja1 a.285.1.1 (A:6-172) Ma 93.9 0.041 3E-06 30.5 4.7 51 13-63 58-111 (167) 3 d1o3ua_ a.24.16.3 (A:) Hypothe 63.5 4.7 0.00034 18.5 5.6 64 10-73 47-119 (126) 4 d1wtya_ a.24.16.2 (A:) Probabl 44.7 9.7 0.00071 16.7 5.7 51 13-67 51-101 (116) 5 d1ufba_ a.24.16.3 (A:) Hypothe 41.5 11 0.00079 16.4 5.6 64 10-73 51-123 (127) 6 d2j9ga2 c.30.1.1 (A:1-114) Bio 24.6 19 0.0014 15.0 2.1 22 34-55 63-84 (114) 7 d1w96a2 c.30.1.1 (A:14-183) Ac 18.8 26 0.0019 14.2 1.8 22 33-54 117-138 (170) 8 d1joga_ a.24.16.2 (A:) Hypothe 17.0 31 0.0023 13.7 9.0 49 14-66 71-119 (135) 9 d1ulza2 c.30.1.1 (A:1-114) Bio 16.8 31 0.0023 13.7 1.9 22 34-55 62-83 (114) 10 d2hzta1 a.4.5.69 (A:4-98) Puta 14.8 28 0.002 14.0 1.2 18 15-32 40-57 (95) No 1 >d3c8ga1 a.285.1.1 (A:1-168) Putative transcriptional regulator YggD {Shigella flexneri [TaxId: 623]} Probab=94.31 E-value=0.083 Score=28.71 Aligned_cols=49 Identities=2% Similarity=-0.157 Sum_probs=41.7 Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHH Q ss_conf 44889999999998689998999999999997313206888---89899999 Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDE 61 (94) Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ 61 (94) +-|+++-||+.++.=|+|++...+-++.+|...|..+|.++ |+.+.... T Consensus 63 PLg~~svrikL~~~LG~Is~~~y~Di~~~~~irn~~~h~~~~~~F~dd~i~~ 114 (168) T d3c8ga1 63 PLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLNEQDETPGFADDITWD 114 (168) T ss_dssp TTCSHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCCCTTSHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 8346999999999948898899988999999999985488778978689999 No 2 >d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]} Probab=93.90 E-value=0.041 Score=30.50 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=42.8 Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHH Q ss_conf 44889999999998689998999999999997313206888---8989999999 Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECL 63 (94) Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll 63 (94) +-|+++-||+.++.=|+|++...+-++.+|...|..+|+++ |+-+....-+ T Consensus 58 PLg~~svrlkL~y~LG~Is~~~y~Di~~~~~irn~l~h~~~~~~F~d~~i~~~i 111 (167) T d3brja1 58 PLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPI 111 (167) T ss_dssp TTCSHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHTCSSCCCTTSHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 824689999999994778889998899999999998448877896778999999 No 3 >d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]} Probab=63.49 E-value=4.7 Score=18.50 Aligned_cols=64 Identities=11% Similarity=-0.041 Sum_probs=49.9 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHHHHHHH Q ss_conf 96544889999999998689998999999999997313206888---------89899999999999999999 Q gi|254781182|r 10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---------SSIEESDECLEFVNLFCDIV 73 (94) Q Consensus 10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---------~~~edA~~ll~f~~~il~~~ 73 (94) ..|++-++...++.|....-.+..+.+.+..+....-..-.++. ++.++|..+++.+..|+.++ T Consensus 47 ~~pk~H~l~~Ll~~l~~~~~~~~~~~~~~~~L~~~yi~~RYP~~~~~~~P~~~y~~~~Ae~al~~a~~vl~~v 119 (126) T d1o3ua_ 47 AQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFC 119 (126) T ss_dssp CCCCCSSHHHHHHHHTTTSCCCHHHHHHHHHHHSCC------CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9987779999999998765211799999999987665053887556777301289999999999999999999 No 4 >d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]} Probab=44.73 E-value=9.7 Score=16.68 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=37.5 Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 4488999999999868999899999999999731320688889899999999999 Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67 (94) Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~~ 67 (94) .+++.-+-++..+..|+|+.. ..|++.+.. .|..+|... .+-|..++..+. T Consensus 51 ~~~spr~~~r~A~~~glI~d~-~~W~~m~~~-RN~tsHtYd--e~~A~~i~~~i~ 101 (116) T d1wtya_ 51 EARSPRAAIRGAFQVGLLPED-PFWLEMLEL-RNLTNHTYD--EALAERIYAELP 101 (116) T ss_dssp CCSSHHHHHHHHHHHTSSCCC-HHHHHHHHH-HHHGGGTTS--HHHHHHHHTTHH T ss_pred CCCCHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHHHCHHCC--HHHHHHHHHHHH T ss_conf 557879999999886988988-999999998-523011057--999999999999 No 5 >d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]} Probab=41.52 E-value=11 Score=16.38 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=47.8 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 965448899999999986899989999999999973132068---------8889899999999999999999 Q gi|254781182|r 10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE---------GQSSIEESDECLEFVNLFCDIV 73 (94) Q Consensus 10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~---------g~~~~edA~~ll~f~~~il~~~ 73 (94) .+|++-++...+..|....-++..+.+.+..+....-.+-=+ ..++.++|..+++.++-|+.++ T Consensus 51 ~~pktH~l~~L~~~l~~~~~~~~~~~~~~~~L~~~y~~~RYP~~~~~~~p~~~y~~e~a~~ai~~a~~v~~~v 123 (127) T d1ufba_ 51 QVAWGHSILDLLADLPEDVDVPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRLEAEEALDLAQKILAFV 123 (127) T ss_dssp CCCCSSCHHHHHHTSCTTSCCCHHHHHHHHHHHTTSSTTTCGGGSSSSCGGGGCCHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 8888878999999998866686678999999999787501898756688534589999999999999999999 No 6 >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=24.58 E-value=19 Score=14.97 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999731320688889 Q gi|254781182|r 34 IFEWSNFVRIEGNKAVHEGQSS 55 (94) Q Consensus 34 i~~~~~~~R~~gN~a~H~g~~~ 55 (94) +..+....+..|-+|+|+|++- T Consensus 63 ~~~Ii~~A~~~~~dAiHPGyGF 84 (114) T d2j9ga2 63 IPAIISAAEITGAVAIHPGYGF 84 (114) T ss_dssp HHHHHHHHHHHTCSEEECCSST T ss_pred HHHHHHHHHHHCCCEEECCHHH T ss_conf 8999999998478646424366 No 7 >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=18.76 E-value=26 Score=14.16 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999973132068888 Q gi|254781182|r 33 EIFEWSNFVRIEGNKAVHEGQS 54 (94) Q Consensus 33 ~i~~~~~~~R~~gN~a~H~g~~ 54 (94) .+..+....+..|-+|+|+|++ T Consensus 117 n~~~II~~A~~~~~DAIHPGYG 138 (170) T d1w96a2 117 NVDLIVDIAERADVDAVWAGWG 138 (170) T ss_dssp CHHHHHHHHHHTTCSEEECCSS T ss_pred HHHHHHHHHHHCCCCEEEECHH T ss_conf 6999999998568788984605 No 8 >d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]} Probab=17.04 E-value=31 Score=13.75 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=35.6 Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 48899999999986899989999999999973132068888989999999999 Q gi|254781182|r 14 CGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66 (94) Q Consensus 14 ~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~ 66 (94) +.+.-+-++.....|+|+. ...|++. +..+|..+|.. +.+.|..++..+ T Consensus 71 ~~spr~~~r~A~~~glI~d-~e~W~~~-~~~RN~tsHtY--de~~A~~i~~~i 119 (135) T d1joga_ 71 AYGFKDILREALRFGLIGD-MSKWVAY-RDMRNITSHTY--DQEKAMAVYAQI 119 (135) T ss_dssp SCCHHHHHHHHHHTTSCSC-HHHHHHH-HHHHTTGGGTT--SHHHHHHHHHTH T ss_pred CCCHHHHHHHHHHCCCCCC-HHHHHHH-HHHHCHHCCCC--CHHHHHHHHHHH T ss_conf 3579999999998489888-9999999-99854303006--899999999999 No 9 >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=16.75 E-value=31 Score=13.71 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999731320688889 Q gi|254781182|r 34 IFEWSNFVRIEGNKAVHEGQSS 55 (94) Q Consensus 34 i~~~~~~~R~~gN~a~H~g~~~ 55 (94) +..+....+..|-+|+|+|++- T Consensus 62 ~~~Ii~~A~~~~~daihPGyGF 83 (114) T d1ulza2 62 KQRIINLALEVGADAIHPGYGF 83 (114) T ss_dssp HHHHHHHHHHTTCCEEECCSST T ss_pred HHHHHHHHHHHCCCEEECCHHH T ss_conf 7999999999699767633465 No 10 >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} Probab=14.81 E-value=28 Score=14.00 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.9 Q ss_pred CCHHHHHHHHHHCCCCCH Q ss_conf 889999999998689998 Q gi|254781182|r 15 GMLSDRTRYLKQHNLIIE 32 (94) Q Consensus 15 g~l~dri~~L~~~g~I~~ 32 (94) .+|++|++.|...|+|.. T Consensus 40 ~~Ls~rLk~Le~~glv~r 57 (95) T d2hzta1 40 KMLTQQLRELEADGVINR 57 (95) T ss_dssp HHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 589999999999687730 Done!