BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781182|ref|YP_003065595.1| hypothetical protein
CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
(94 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040859|gb|ACT57655.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 94
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD
Sbjct: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Query: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG
Sbjct: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
>gi|315122553|ref|YP_004063042.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495955|gb|ADR52554.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 246
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 70/93 (75%)
Query: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
+ DDQG+ I+F L ++ + L++ NLI E++EWSN +R+ GNKAVHEG++ IE+++
Sbjct: 154 ITDDQGKAIDFSNNINLKNKIKSLREQNLITRELYEWSNHIRLAGNKAVHEGEAHIEDAN 213
Query: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRD 93
EC EFV+LFC I+FTLPALI++ K + ++S +
Sbjct: 214 ECFEFVHLFCHILFTLPALIEQNKLINSDKSTE 246
>gi|254503691|ref|ZP_05115842.1| hypothetical protein SADFL11_3730 [Labrenzia alexandrii DFL-11]
gi|222439762|gb|EEE46441.1| hypothetical protein SADFL11_3730 [Labrenzia alexandrii DFL-11]
Length = 242
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
L R L+ +I + + +W++ +RI+GN A HEG E E + F+ LF DIVF L
Sbjct: 173 LISRINDLRDQGVITQGLADWAHHIRIDGNLAAHEGVGDQEAVREYIGFLRLFLDIVFAL 232
Query: 77 PALIKEKK 84
P I ++
Sbjct: 233 PERIAARR 240
>gi|218688916|ref|YP_002397128.1| hypothetical protein ECED1_1107 [Escherichia coli ED1a]
gi|218426480|emb|CAR07308.1| hypothetical protein ECED1_1107 [Escherichia coli ED1a]
Length = 224
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ--SSIEESDECLEFVNLFCDIVF 74
LS R + + + LI E++ EW++ VRI+ NKAVH + + IE S + L F +F F
Sbjct: 146 LSQRIQMIYKKGLITEQMKEWAHIVRIDANKAVHTDEVFTPIEAS-QILSFTEMFLVYAF 204
Query: 75 TLPALIKEKK 84
TLPA+++ ++
Sbjct: 205 TLPAMVEARR 214
>gi|188533144|ref|YP_001906941.1| Hypothetical protein, probable Cecropin family protein [Erwinia
tasmaniensis Et1/99]
gi|188028186|emb|CAO96044.1| Hypothetical protein, probable Cecropin family protein [Erwinia
tasmaniensis Et1/99]
Length = 232
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH-EGQSSIEESDECLEFVNLFCDIVFT 75
L R LK+ +I +E++EW++ VR++GN+ H E + + + L F F FT
Sbjct: 156 LQKRIEKLKEKGVITKEMYEWADIVRLDGNEQTHSEDEFDPQSAKAVLAFTETFLLYAFT 215
Query: 76 LPALIKEKK 84
LP +++EK+
Sbjct: 216 LPEMVREKR 224
>gi|212703623|ref|ZP_03311751.1| hypothetical protein DESPIG_01668 [Desulfovibrio piger ATCC 29098]
gi|212672953|gb|EEB33436.1| hypothetical protein DESPIG_01668 [Desulfovibrio piger ATCC 29098]
Length = 104
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
L DR L + +I + EW++ +R GN+A H+ + S +E+ E + F +F F L
Sbjct: 33 LYDRIDNLYKKGVITASLKEWASIIRRAGNEAAHDMEGSPDEAGELVAFTRIFLQFTFEL 92
Query: 77 PALIKEKK 84
P +I +
Sbjct: 93 PDIISRTR 100
>gi|123442587|ref|YP_001006564.1| hypothetical protein YE2343 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089548|emb|CAL12396.1| hypothetical phage protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 197
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVFT 75
LS R L I E++ +W++ VRI+ N AVH ++ + +E++E + F +F FT
Sbjct: 124 LSQRISMLYGKGKITEQMKDWAHIVRIDSNGAVHSDEAFTKDEAEEVIGFTEVFLIYSFT 183
Query: 76 LPALIKEKKSTHPNQSRD 93
LP ++ K+ N SR+
Sbjct: 184 LPEMVTAKQ----NASRE 197
>gi|320322284|gb|EFW78378.1| hypothetical protein PsgB076_22996 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331941|gb|EFW87877.1| hypothetical protein PsgRace4_00025 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330882657|gb|EGH16806.1| hypothetical protein Pgy4_27600 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 146
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD--ECLEFVNLFCDIVF 74
LS + +K+ LI E +FEWS+ +R+ GN+A H SI + D + +EF N D +F
Sbjct: 70 LSLSLKKMKEDGLIDERLFEWSDALRVVGNEAAHGVGISIAQPDARDTIEFTNAILDYLF 129
Query: 75 T 75
+
Sbjct: 130 S 130
>gi|330965893|gb|EGH66153.1| hypothetical protein PSYAC_14870 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 201
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 123 KDGSLYSRIEAAATHHLITPEMASWAHEIRLDANDQRHSDEDASMPSEAEASKAVEFATA 182
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 183 LAQFLFVLPARVARGRA 199
>gi|171779682|ref|ZP_02920638.1| hypothetical protein STRINF_01519 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281784|gb|EDT47218.1| hypothetical protein STRINF_01519 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 244
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDI 72
L+++ YL + + IE I + + VR+ GN AVH GQ ++++ E L FVNL D
Sbjct: 158 LNNKIGYLVRQGMPIE-IQQMLDSVRVVGNNAVHPGQIDLKDNKELAASLLTFVNLIVDN 216
Query: 73 VFTLPALIKEKKSTHPNQSRDG 94
+ P IK + P R
Sbjct: 217 RISQPKKIKSVYDSLPESYRKA 238
>gi|301386145|ref|ZP_07234563.1| hypothetical protein PsyrptM_26064 [Pseudomonas syringae pv. tomato
Max13]
Length = 201
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 123 KDGSLYSRIEAAATHHLITAEMASWAHEIRLDANDQRHSDEDASLPSEAEASKAVEFAMA 182
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 183 LAQFLFVLPARVARGRA 199
>gi|213971540|ref|ZP_03399651.1| hypothetical protein PSPTOT1_0852 [Pseudomonas syringae pv. tomato
T1]
gi|302060707|ref|ZP_07252248.1| hypothetical protein PsyrptK_12010 [Pseudomonas syringae pv. tomato
K40]
gi|213923732|gb|EEB57316.1| hypothetical protein PSPTOT1_0852 [Pseudomonas syringae pv. tomato
T1]
Length = 221
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 143 KDGSLYSRIEAAATHHLITAEMASWAHEIRLDANDQRHSDEDASLPSEAEASKAVEFAMA 202
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 203 LAQFLFVLPARVARGRA 219
>gi|257452213|ref|ZP_05617512.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
gi|317058756|ref|ZP_07923241.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
gi|313684432|gb|EFS21267.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
Length = 1088
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
+RI+ K M SDR LK++ LI E+I + +R +GNKAVH G EE+ E L
Sbjct: 52 ERISDSKKNMASDRLLALKKYELIPEDIEKILTTLRKKGNKAVH-GIYGDEETAETL 107
>gi|332533299|ref|ZP_08409165.1| hypothetical protein PH505_ao00110 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037181|gb|EGI73637.1| hypothetical protein PH505_ao00110 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 266
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 4 DQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE-- 61
+ G++I+ + ++S L Q L + VR+ GN+AVH G+ +++ E
Sbjct: 171 ETGKKIDKDIASLVSKGLNPLVQQAL---------DIVRVVGNEAVHPGEIDFKDNKEIA 221
Query: 62 --CLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
VNL CD + T P +KE P +G
Sbjct: 222 LKLFGLVNLICDQMITHPKQVKELYGDLPKDKLEG 256
>gi|253583388|ref|ZP_04860586.1| type I restriction enzyme EcoKI subunit R [Fusobacterium varium
ATCC 27725]
gi|251833960|gb|EES62523.1| type I restriction enzyme EcoKI subunit R [Fusobacterium varium
ATCC 27725]
Length = 1088
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
+++N + G DR + LK ++LI E+I +R +GN AVH + E++ L V
Sbjct: 52 EKLNEPESGSQLDRIKILKTYDLIPEDIENILQLIRKKGNTAVHNMSGNESEAETLLSLV 111
Query: 67 NLFC 70
C
Sbjct: 112 VKLC 115
>gi|149004391|ref|ZP_01829131.1| hypothetical protein CGSSp14BS69_07031 [Streptococcus pneumoniae
SP14-BS69]
gi|149004569|ref|ZP_01829262.1| hypothetical protein CGSSp14BS69_06037 [Streptococcus pneumoniae
SP14-BS69]
gi|147757543|gb|EDK64568.1| hypothetical protein CGSSp14BS69_06037 [Streptococcus pneumoniae
SP14-BS69]
gi|147757640|gb|EDK64658.1| hypothetical protein CGSSp14BS69_07031 [Streptococcus pneumoniae
SP14-BS69]
Length = 236
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 33 EIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDIVFTLPALIKEKKSTHP 88
EI + + VR+ GN AVH GQ I+++ E L F+NL D T P I + + P
Sbjct: 165 EIQQMLDSVRVIGNNAVHPGQIDIKDNKELALSLLSFINLIVDNRITQPKKILDIYNLLP 224
Query: 89 NQSRDG 94
+ R+
Sbjct: 225 DSYRNS 230
>gi|257463918|ref|ZP_05628304.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp. D12]
gi|317061445|ref|ZP_07925930.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp. D12]
gi|313687121|gb|EFS23956.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp. D12]
Length = 1087
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
+ I+ K M SDR LK++ LI E+I + +R +GNKAVH G EE+ E L
Sbjct: 52 EHISDSKKNMASDRLLVLKKYELIPEDIEKILTTLRKKGNKAVH-GSYGDEETAETL 107
>gi|78067675|ref|YP_370444.1| hypothetical protein Bcep18194_A6206 [Burkholderia sp. 383]
gi|77968420|gb|ABB09800.1| hypothetical protein Bcep18194_A6206 [Burkholderia sp. 383]
Length = 210
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 7 QRINFEKCG---MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG--QSSIEESDE 61
+R+ EK G ML+ LK +I + + EW++ +R+E N H +++ E++ +
Sbjct: 113 ERLIKEKTGKPQMLAKGLADLKSRGVIDQRLHEWADALRVERNIGAHASDVETTKEDAQD 172
Query: 62 CLEFVNLFCDIVFTL 76
++F D V+TL
Sbjct: 173 IIDFTVAIFDYVYTL 187
>gi|223934041|ref|ZP_03625994.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gi|223897298|gb|EEF63706.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 239
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 33 EIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDIVFTLPALIKEKKSTHP 88
EI + + VR+ GN AVH GQ I+++ E L FVNL D + P I E P
Sbjct: 168 EIQQMLDSVRVIGNNAVHPGQIEIQDNKELALSLLNFVNLITDSQISQPKKIAEIYGLLP 227
>gi|78485663|ref|YP_391588.1| hypothetical protein Tcr_1319 [Thiomicrospira crunogena XCL-2]
gi|78363949|gb|ABB41914.1| hypothetical protein Tcr_1319 [Thiomicrospira crunogena XCL-2]
Length = 232
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
L R +L ++ E + + S ++ +GN HEG S E++++ L+F ++ + ++T
Sbjct: 155 LGLRLPWLFDKGVLPEALRDLSGCIKDDGNDGAHEGTLSEEDAEDLLDFTSVLLERIYTE 214
Query: 77 PALIKEKK 84
P ++ K
Sbjct: 215 PERLRLAK 222
>gi|257465992|ref|ZP_05630303.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917148|ref|ZP_07913388.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
gi|313691023|gb|EFS27858.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
Length = 1088
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
M SDR LK++ LI E+I + +R +GNKAVH G EE+ E L
Sbjct: 61 MASDRLLALKKYELIPEDIEKILTTLRKKGNKAVH-GIYGDEETAETL 107
Searching..................................................done
Results from round 2
>gi|315122553|ref|YP_004063042.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495955|gb|ADR52554.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 246
Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/93 (48%), Positives = 70/93 (75%)
Query: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
+ DDQG+ I+F L ++ + L++ NLI E++EWSN +R+ GNKAVHEG++ IE+++
Sbjct: 154 ITDDQGKAIDFSNNINLKNKIKSLREQNLITRELYEWSNHIRLAGNKAVHEGEAHIEDAN 213
Query: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRD 93
EC EFV+LFC I+FTLPALI++ K + ++S +
Sbjct: 214 ECFEFVHLFCHILFTLPALIEQNKLINSDKSTE 246
>gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040859|gb|ACT57655.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 94
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD
Sbjct: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Query: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG
Sbjct: 61 ECLEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
>gi|254503691|ref|ZP_05115842.1| hypothetical protein SADFL11_3730 [Labrenzia alexandrii DFL-11]
gi|222439762|gb|EEE46441.1| hypothetical protein SADFL11_3730 [Labrenzia alexandrii DFL-11]
Length = 242
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDI 72
+ L R L+ +I + + +W++ +RI+GN A HEG E E + F+ LF DI
Sbjct: 169 ENRKLISRINDLRDQGVITQGLADWAHHIRIDGNLAAHEGVGDQEAVREYIGFLRLFLDI 228
Query: 73 VFTLPALIKEKK 84
VF LP I ++
Sbjct: 229 VFALPERIAARR 240
>gi|212703623|ref|ZP_03311751.1| hypothetical protein DESPIG_01668 [Desulfovibrio piger ATCC 29098]
gi|212672953|gb|EEB33436.1| hypothetical protein DESPIG_01668 [Desulfovibrio piger ATCC 29098]
Length = 104
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
L DR L + +I + EW++ +R GN+A H+ + S +E+ E + F +F F L
Sbjct: 33 LYDRIDNLYKKGVITASLKEWASIIRRAGNEAAHDMEGSPDEAGELVAFTRIFLQFTFEL 92
Query: 77 PALIKEKK 84
P +I +
Sbjct: 93 PDIISRTR 100
>gi|188533144|ref|YP_001906941.1| Hypothetical protein, probable Cecropin family protein [Erwinia
tasmaniensis Et1/99]
gi|188028186|emb|CAO96044.1| Hypothetical protein, probable Cecropin family protein [Erwinia
tasmaniensis Et1/99]
Length = 232
Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH-EGQSSIEESDECLEFVNLFCDIVFT 75
L R LK+ +I +E++EW++ VR++GN+ H E + + + L F F FT
Sbjct: 156 LQKRIEKLKEKGVITKEMYEWADIVRLDGNEQTHSEDEFDPQSAKAVLAFTETFLLYAFT 215
Query: 76 LPALIKEKK 84
LP +++EK+
Sbjct: 216 LPEMVREKR 224
>gi|218688916|ref|YP_002397128.1| hypothetical protein ECED1_1107 [Escherichia coli ED1a]
gi|218426480|emb|CAR07308.1| hypothetical protein ECED1_1107 [Escherichia coli ED1a]
Length = 224
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ-SSIEESDECLEFVNLFCDIVFT 75
LS R + + + LI E++ EW++ VRI+ NKAVH + + E+ + L F +F FT
Sbjct: 146 LSQRIQMIYKKGLITEQMKEWAHIVRIDANKAVHTDEVFTPIEASQILSFTEMFLVYAFT 205
Query: 76 LPALIKEKK 84
LPA+++ ++
Sbjct: 206 LPAMVEARR 214
>gi|123442587|ref|YP_001006564.1| hypothetical protein YE2343 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089548|emb|CAL12396.1| hypothetical phage protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 197
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ-SSIEESDECLEFVNLFC 70
LS R L I E++ +W++ VRI+ N AVH + + +E++E + F +F
Sbjct: 119 SNKEQLSQRISMLYGKGKITEQMKDWAHIVRIDSNGAVHSDEAFTKDEAEEVIGFTEVFL 178
Query: 71 DIVFTLPALIKEKKSTHPNQSRD 93
FTLP ++ K+ N SR+
Sbjct: 179 IYSFTLPEMVTAKQ----NASRE 197
>gi|295688019|ref|YP_003591712.1| hypothetical protein Cseg_0582 [Caulobacter segnis ATCC 21756]
gi|295429922|gb|ADG09094.1| hypothetical protein Cseg_0582 [Caulobacter segnis ATCC 21756]
Length = 237
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 4 DQGQRINFEK-CGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDE 61
D G +I F G L + L + I + EW++ VR+ GN H+ + +++
Sbjct: 137 DLGLKIRFPDLKGDLYKKVDKLASDHEIPLSLAEWAHEVRVIGNDGAHDLDGCNTDDAQA 196
Query: 62 CLEFVNLFCDIVFTLPALIKEKKSTHPNQSRD 93
+FV+ +F+LP +I ++ ++ +
Sbjct: 197 AHDFVDAVLRYLFSLPGMIAARRRIETSEETE 228
>gi|213971540|ref|ZP_03399651.1| hypothetical protein PSPTOT1_0852 [Pseudomonas syringae pv. tomato
T1]
gi|302060707|ref|ZP_07252248.1| hypothetical protein PsyrptK_12010 [Pseudomonas syringae pv. tomato
K40]
gi|213923732|gb|EEB57316.1| hypothetical protein PSPTOT1_0852 [Pseudomonas syringae pv. tomato
T1]
Length = 221
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS----SIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 143 KDGSLYSRIEAAATHHLITAEMASWAHEIRLDANDQRHSDEDASLPSEAEASKAVEFAMA 202
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 203 LAQFLFVLPARVARGRA 219
>gi|301386145|ref|ZP_07234563.1| hypothetical protein PsyrptM_26064 [Pseudomonas syringae pv. tomato
Max13]
Length = 201
Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS----SIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 123 KDGSLYSRIEAAATHHLITAEMASWAHEIRLDANDQRHSDEDASLPSEAEASKAVEFAMA 182
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 183 LAQFLFVLPARVARGRA 199
>gi|330965893|gb|EGH66153.1| hypothetical protein PSYAC_14870 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 201
Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS----SIEESDECLEFVNL 68
K G L R H+LI E+ W++ +R++ N H + S E+ + +EF
Sbjct: 123 KDGSLYSRIEAAATHHLITPEMASWAHEIRLDANDQRHSDEDASMPSEAEASKAVEFATA 182
Query: 69 FCDIVFTLPALIKEKKS 85
+F LPA + ++
Sbjct: 183 LAQFLFVLPARVARGRA 199
>gi|218663727|ref|ZP_03519657.1| hypothetical protein RetlI_32940 [Rhizobium etli IE4771]
Length = 233
Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
G L+ + + L ++ + +W++ +RI GN H+ + E+ F + F +
Sbjct: 160 GTLAGKIKALVSQGVLPASLGDWADEIRIVGNDGAHDDGVNREDLKAARMFCDSFLRYLI 219
Query: 75 TLPALIKEKK 84
TLP I+ ++
Sbjct: 220 TLPKEIELRR 229
>gi|261493748|ref|ZP_05990265.1| hypothetical protein COK_2151 [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310593|gb|EEY11779.1| hypothetical protein COK_2151 [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 234
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLEFVNLFCDIVFT 75
L+ R L + +++ ++ +R +A H S++E +E F LF FT
Sbjct: 157 LNKRIEKLFDDGKLTKDLKNFALHIRSLSAEASHTYNDFSVDELEELRLFTQLFLRYTFT 216
Query: 76 LPALIKEKKSTHPNQSRD 93
LPA+I P++SR+
Sbjct: 217 LPAMI-------PDESRE 227
>gi|320322284|gb|EFW78378.1| hypothetical protein PsgB076_22996 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331941|gb|EFW87877.1| hypothetical protein PsgRace4_00025 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330882657|gb|EGH16806.1| hypothetical protein Pgy4_27600 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 146
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIE--ESDECLEFVNLFCDIV 73
LS + +K+ LI E +FEWS+ +R+ GN+A H SI ++ + +EF N D +
Sbjct: 69 NLSLSLKKMKEDGLIDERLFEWSDALRVVGNEAAHGVGISIAQPDARDTIEFTNAILDYL 128
Query: 74 FTLPALIKEKKSTHPNQS 91
F+ ++ K +S
Sbjct: 129 FSYRDRFEQFKKRRSGES 146
>gi|167578796|ref|ZP_02371670.1| hypothetical protein BthaT_11678 [Burkholderia thailandensis
TXDOH]
Length = 96
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH-EGQSSIEESDECLEFVNLFCDIVFT 75
L R L I +++ W++ VR++GN A+H E + + E + E +EF L ++T
Sbjct: 22 LEKRIDKLADAGKITQDLKTWAHRVRLDGNDALHEEEEFTRESATELMEFTRLLLTYLYT 81
Query: 76 LPALIKEK 83
LP I+ +
Sbjct: 82 LPEKIRLR 89
>gi|134288672|ref|YP_001111134.1| gp55, hypothetical protein [Burkholderia phage phi644-2]
gi|134132057|gb|ABO60854.1| gp55, hypothetical protein [Burkholderia phage phi644-2]
Length = 104
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH-EGQSSIEESDECLEFVNLFCDIVFT 75
L R L I +++ W++ VR++GN A+H E + + E + E +EF L ++T
Sbjct: 22 LEKRIDRLADAGKITQDLKIWAHRVRLDGNDALHEEEEFTRESATELMEFTRLLLTYLYT 81
Query: 76 LPALIKEK 83
LP I+ +
Sbjct: 82 LPEKIRLR 89
>gi|78067675|ref|YP_370444.1| hypothetical protein Bcep18194_A6206 [Burkholderia sp. 383]
gi|77968420|gb|ABB09800.1| hypothetical protein Bcep18194_A6206 [Burkholderia sp. 383]
Length = 210
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH--EGQSSIEESDECLEFVNLFCDIV 73
ML+ LK +I + + EW++ +R+E N H + +++ E++ + ++F D V
Sbjct: 125 MLAKGLADLKSRGVIDQRLHEWADALRVERNIGAHASDVETTKEDAQDIIDFTVAIFDYV 184
Query: 74 FTLPALIKEKK 84
+TL ++ +
Sbjct: 185 YTLAEKYEKYR 195
>gi|262393969|ref|YP_003285823.1| hypothetical protein VEA_003198 [Vibrio sp. Ex25]
gi|262337563|gb|ACY51358.1| hypothetical protein VEA_003198 [Vibrio sp. Ex25]
Length = 215
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH--EGQSSIEESDECLEFVNLFCDIV 73
DR L + I + W++ +R GN A H S E++ +CL+ +
Sbjct: 139 NFYDRLESLHKAGHIDARLLSWAHGIRALGNDAAHAITANVSKEDAKDCLDLTEALLIYI 198
Query: 74 FTLPALIKE 82
++L +E
Sbjct: 199 YSLGHRFEE 207
>gi|254228158|ref|ZP_04921587.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|151939231|gb|EDN58060.1| conserved hypothetical protein [Vibrio sp. Ex25]
Length = 201
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH--EGQSSIEESDECLEFVNLFCDIV 73
DR L + I + W++ +R GN A H S E++ +CL+ +
Sbjct: 125 NFYDRLESLHKAGHIDARLLSWAHGIRALGNDAAHAITANVSKEDAKDCLDLTEALLIYI 184
Query: 74 FTLPALIKE 82
++L +E
Sbjct: 185 YSLGHRFEE 193
>gi|284030151|ref|YP_003380082.1| hypothetical protein Kfla_2207 [Kribbella flavida DSM 17836]
gi|283809444|gb|ADB31283.1| hypothetical protein Kfla_2207 [Kribbella flavida DSM 17836]
Length = 187
Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSI---EESDECLEFVNLFC 70
G L + L+Q ++I E + E ++ +R GN+ H + E+++E L ++
Sbjct: 96 GTLMSKIDGLRQADVISEAMKEAAHEIRFAGNEVAHGDLVTDPLTREDAEEVLGLMDAII 155
Query: 71 DIVFTLPALIKEKK 84
V+ PA + +
Sbjct: 156 LRVYQEPAQVARVR 169
>gi|222085947|ref|YP_002544479.1| hypothetical protein Arad_2333 [Agrobacterium radiobacter K84]
gi|221723395|gb|ACM26551.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 142
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 34/71 (47%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
G L+ + + L + + + +W++ +R+ GN H+ + +E F + F +
Sbjct: 69 GTLAAKIKTLVGGGELPKSLGDWADEIRLIGNDGAHDDGVTRDELKAARMFCDSFLRYLI 128
Query: 75 TLPALIKEKKS 85
TLP + ++S
Sbjct: 129 TLPTEVALRRS 139
>gi|78485663|ref|YP_391588.1| hypothetical protein Tcr_1319 [Thiomicrospira crunogena XCL-2]
gi|78363949|gb|ABB41914.1| hypothetical protein Tcr_1319 [Thiomicrospira crunogena XCL-2]
Length = 232
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFT 75
L R +L ++ E + + S ++ +GN HEG S E++++ L+F ++ + ++T
Sbjct: 154 NLGLRLPWLFDKGVLPEALRDLSGCIKDDGNDGAHEGTLSEEDAEDLLDFTSVLLERIYT 213
Query: 76 LPALIKEKK 84
P ++ K
Sbjct: 214 EPERLRLAK 222
>gi|312831426|emb|CBY17606.1| unnamed protein product [Escherichia coli LF82]
Length = 232
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 DQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
+QG + L R +L ++L+ E + E + V+ +GN HEG +++
Sbjct: 145 EQGPAQKIRRSLGL--RMEWLFDNHLLPEALRELAECVKDDGNDGAHEGILDKAAAEDLE 202
Query: 64 EFVNLFCDIVFTLPALIKEKKS 85
+F LF + ++T P + E K+
Sbjct: 203 DFTYLFLERLYTEPQRLIEAKT 224
>gi|226313133|ref|YP_002773027.1| hypothetical protein BBR47_35460 [Brevibacillus brevis NBRC 100599]
gi|226096081|dbj|BAH44523.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 243
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH--EGQSSIEESDECLEFVNLFCDIVF 74
L + + L ++ + E ++ +R GN+A H E + S + ++F ++ D V+
Sbjct: 142 LYHKLKDLSDKGVLPPIVNEMASVLRELGNEAAHGDEREFSDDLISSMIKFTHVILDYVY 201
Query: 75 TLPALIK 81
LP +
Sbjct: 202 NLPDKLS 208
>gi|260579753|ref|ZP_05847610.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258602105|gb|EEW15425.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length = 221
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 2 KDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFE-WSNFVRIEGNKAVHEGQSSIEE-S 59
K+D+ +FE+C L ++ + I + W++ +R+ GN A HE +S + +
Sbjct: 141 KNDRSWAPSFEECVNF------LVNEGILTQRIKDSWADSIRLWGNAATHELKSVRQSTA 194
Query: 60 DECLEFVNLFCDIVFTL 76
+ +EF + + F
Sbjct: 195 LKAIEFTQMILRMAFEF 211
>gi|218782532|ref|YP_002433850.1| hypothetical protein Dalk_4704 [Desulfatibacillum alkenivorans
AK-01]
gi|218763916|gb|ACL06382.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
AK-01]
Length = 233
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
L R +L + + E + + S +R +GN H G + E++++ LEF + + ++T
Sbjct: 155 LGYRLPWLFDNGYLPEGLRDLSTCLREDGNDGAHAGNLTHEDAEDLLEFTTILLERIYTE 214
Query: 77 PALIK 81
P ++
Sbjct: 215 PEKLR 219
>gi|53718204|ref|YP_107190.1| hypothetical protein BPSL0564 [Burkholderia pseudomallei K96243]
gi|167737075|ref|ZP_02409849.1| hypothetical protein Bpse14_03366 [Burkholderia pseudomallei 14]
gi|167814189|ref|ZP_02445869.1| hypothetical protein Bpse9_03543 [Burkholderia pseudomallei 91]
gi|52208618|emb|CAH34554.1| hypothetical protein BPSL0564 [Burkholderia pseudomallei K96243]
Length = 202
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH--EGQSSIEESDECLEFVNLFCDIVF 74
L+ L+ +I E + W++ +R+E N H +++ +++++ ++F D V+
Sbjct: 126 LARGLAELRAQGVIDERLHAWADALRVERNIGAHASNTETTKDDAEDIIDFTVAIFDYVY 185
Query: 75 TLPALIKE 82
TL ++
Sbjct: 186 TLAERYQK 193
>gi|154508189|ref|ZP_02043831.1| hypothetical protein ACTODO_00683 [Actinomyces odontolyticus ATCC
17982]
gi|153797823|gb|EDN80243.1| hypothetical protein ACTODO_00683 [Actinomyces odontolyticus ATCC
17982]
Length = 184
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH---EGQSSIEESDECLEFVNLFCD 71
G L + L++ LI + S+ VR+ GN+ H + E+ D+ LEF++ +
Sbjct: 98 GTLKQKIDSLEESRLINPTLAGLSHQVRLMGNEMAHGDLDAAIDAEDCDDLLEFMSALLE 157
Query: 72 IVFTLPALIKEKKSTHPNQSRD 93
++ P + ++ + + +
Sbjct: 158 EIYQRPISLARRQELNRQRKAE 179
>gi|282901658|ref|ZP_06309574.1| hypothetical protein CRC_03078 [Cylindrospermopsis raciborskii
CS-505]
gi|281193421|gb|EFA68402.1| hypothetical protein CRC_03078 [Cylindrospermopsis raciborskii
CS-505]
Length = 322
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEESDECLEFVNLFCDIV 73
G L ++ + +K+ +I + +++W++ +R+ N VH+ ++ + F D +
Sbjct: 243 GSLENKLKKMKEQEIIDQNLYDWADRLRVTENDFVHKNITFGATDAQYIINFTYTVIDYI 302
Query: 74 FT 75
FT
Sbjct: 303 FT 304
>gi|302388494|ref|YP_003824316.1| SH3 type 3 domain protein [Clostridium saccharolyticum WM1]
gi|302199122|gb|ADL06693.1| SH3 type 3 domain protein [Clostridium saccharolyticum WM1]
Length = 377
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
G L+D L + I + + + +R+ GNKAVHEG S +++E ++ +
Sbjct: 55 GDLADSIDQLFEGRFISQSAKDHYHRIRVLGNKAVHEGDDSPYDANEAVQLL 106
>gi|229195090|ref|ZP_04321865.1| Type III restriction protein res subunit [Bacillus cereus m1293]
gi|228588319|gb|EEK46362.1| Type III restriction protein res subunit [Bacillus cereus m1293]
Length = 1068
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNLF 69
DR + L++ L+ +E+++ + +R +GN A HE G +++E+ L F+ ++
Sbjct: 65 DRIQTLRREGLLEKELYDMFDALRKKGNNAAHEAGYGTVKEAQALLLMAFRLGIWFMEVY 124
Query: 70 CDIVFTLPALIKEKKSTHPNQS 91
D F P ++ +K + S
Sbjct: 125 GDWDFEAPEYVEPEKEEKVDAS 146
>gi|282896260|ref|ZP_06304282.1| hypothetical protein CRD_01142 [Raphidiopsis brookii D9]
gi|281198756|gb|EFA73635.1| hypothetical protein CRD_01142 [Raphidiopsis brookii D9]
Length = 325
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIV 73
L + +K+ +I + +++W++ +R+ N VH+ + ++ + F D +
Sbjct: 243 VSLEKKLNKMKEQEIIDQNLYDWADRLRVTENDFVHKSITCGATDAQHIINFTYTVTDYI 302
Query: 74 FTLPALIK 81
FT I+
Sbjct: 303 FTYRKKIE 310
>gi|42779916|ref|NP_977163.1| type I restriction enzyme EcoKI subunit R [Bacillus cereus ATCC
10987]
gi|42735834|gb|AAS39771.1| type I restriction-modification system, R subunit [Bacillus cereus
ATCC 10987]
Length = 1068
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNLF 69
DR + L++ L+ +E+++ + +R +GN A HE G +++E+ L F+ ++
Sbjct: 65 DRIQTLRREGLLEKELYDMFDALRKKGNNAAHEAGYGTVKEAQALLLMSFRLGIWFMEVY 124
Query: 70 CDIVFTLPALIKEKKSTHPNQS 91
D F P ++ +K + S
Sbjct: 125 GDWDFEAPEYVEPEKEEKVDAS 146
>gi|239629139|ref|ZP_04672170.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519285|gb|EEQ59151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 330
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
G LSD L + I + + + +RI GNKAVHEG + ++++ L V+
Sbjct: 53 GDLSDTIDQLYEGQWINKATKDNYHTIRILGNKAVHEGDDAAYDANQAY---QLLTQEVY 109
Query: 75 TLPALIKEKKSTHPNQSRDG 94
+S+ P+Q+ G
Sbjct: 110 VFANEFSGGRSSRPSQASRG 129
>gi|82617326|emb|CAI64238.1| hypothetical protein [uncultured archaeon]
gi|268323035|emb|CBH36623.1| conserved hypothetical protein [uncultured archaeon]
Length = 215
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVFTLPAL 79
YL++ + + W + +R GNKA H +S + ++ L F +++ + +
Sbjct: 148 LSYLEEQGFVTPPMKGWVDLIRQHGNKATHSLESPDKKRAESTLMFTAELLRLIYEMEHM 207
Query: 80 IKE 82
K+
Sbjct: 208 SKQ 210
>gi|82617194|emb|CAI64101.1| hypothetical protein [uncultured archaeon]
Length = 215
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVFTLPAL 79
YL++ + + W + +R GNKA H +S + ++ L F +++ + +
Sbjct: 148 LSYLEEQGFVTPPMKGWVDLIRQHGNKATHSLESPDKKRAESTLMFTAELLRLIYEMEHM 207
Query: 80 IKE 82
K+
Sbjct: 208 SKQ 210
>gi|266621661|ref|ZP_06114596.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288866665|gb|EFC98963.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 326
Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN----LFC 70
G L+D L + + I + + + +R+ GNKAVH+G S +++E + ++ F
Sbjct: 55 GDLADSIDQLFEGHWISQATKDHYHRIRVLGNKAVHDGNDSPYDANEAFQLLSQEATAFA 114
Query: 71 DI--------VFTLPALIKEKKSTHPNQSRDG 94
DI T P +S+ P Q G
Sbjct: 115 DIYSGRRRSTTPTRPQQRPASRSSQPAQRSTG 146
>gi|90592606|ref|YP_529866.1| hypothetical protein [Lactobacillus phage KC5a]
gi|116629261|ref|YP_814433.1| hypothetical protein LGAS_0601 [Lactobacillus gasseri ATCC 33323]
gi|116629321|ref|YP_814493.1| hypothetical protein LGAS_0663 [Lactobacillus gasseri ATCC 33323]
gi|311111441|ref|ZP_07712838.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|89891935|gb|ABD78808.1| hypothetical protein [Lactobacillus phage KC5a]
gi|116094843|gb|ABJ59995.1| hypothetical protein LGAS_0601 [Lactobacillus gasseri ATCC 33323]
gi|116094903|gb|ABJ60055.1| hypothetical protein LGAS_0663 [Lactobacillus gasseri ATCC 33323]
gi|311066595|gb|EFQ46935.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
Length = 205
Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSI-EESDECLEFVNLFC 70
+ + YL +++ + + +W + +R GN+A HE Q + E++ + ++F +
Sbjct: 127 KDNLKFVEYVNYLNENHFVSVKSHDWVDQIRKYGNEATHEIQVNTKEDAQKIIKFCEMIL 186
Query: 71 DIVFTLPALI 80
+ + P+ I
Sbjct: 187 KMNYEYPSEI 196
>gi|291167071|gb|EFE29117.1| hypothetical protein HMPREF0389_01039 [Filifactor alocis ATCC
35896]
Length = 217
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG--QSSIEESDECLEFVNLFCDIVF 74
L + L ++ E + +R GN A H + + + EC+EF+++ + ++
Sbjct: 137 LELKIADLVNKKILPEMMNSACWILRQLGNDAAHADDVEFTELDVKECIEFISIIINYLY 196
Query: 75 TLPALIKEKKSTHPNQSRD 93
++P I + KS ++
Sbjct: 197 SMPIRIDQLKSKIEDRKTK 215
>gi|266619616|ref|ZP_06112551.1| type I restriction-modification system, R subunit [Clostridium
hathewayi DSM 13479]
gi|288868818|gb|EFD01117.1| type I restriction-modification system, R subunit [Clostridium
hathewayi DSM 13479]
Length = 1088
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 8 RINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
R+ F K R L + L+ ++ + + +R + NKAVHE S ++ L+ +
Sbjct: 53 RLPFPKDNTSISRIDTLYREGLLTNDLTDILHLMRKKRNKAVHENYESESDAKILLQMAH 112
Query: 68 LFCDI 72
C
Sbjct: 113 SLCQW 117
>gi|329667173|gb|AEB93121.1| hypothetical protein LJP_0795 [Lactobacillus johnsonii DPC 6026]
Length = 202
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ-SSIEESDECLEFVNLFC 70
+ + YL + + EW + +R GN+A HE Q ++ +++ + ++F +
Sbjct: 127 KDNCKFVEYVNYLADSHFVSVRSHEWVDQIRKYGNEATHEIQVNTQQDAQKIIKFCEMIL 186
Query: 71 DIVFTLPALI 80
+ + P+ I
Sbjct: 187 KMNYEYPSEI 196
>gi|91783377|ref|YP_558583.1| hypothetical protein Bxe_A2440 [Burkholderia xenovorans LB400]
gi|91687331|gb|ABE30531.1| hypothetical protein Bxe_A2440 [Burkholderia xenovorans LB400]
Length = 235
Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 4 DQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
D+ +N + L R ++ ++N++ + + + V+ +GN H+G S ++++
Sbjct: 140 DETPGLNAQGRRSLGLRMNWMFENNILPAALQDLAQCVKDDGNDGAHDGTLSAVDAEDLQ 199
Query: 64 EFVNLFCDIVFTLP---ALIKEKKSTHPNQS 91
EF + ++T P + KE+++ +S
Sbjct: 200 EFTFELLERLYTEPKRLEIAKERRAARHAKS 230
>gi|218901961|ref|YP_002449795.1| Type III restriction enzyme, res subunit [Bacillus cereus AH820]
gi|218535465|gb|ACK87863.1| Type III restriction enzyme, res subunit [Bacillus cereus AH820]
Length = 1068
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNLF 69
DR + L++ L+ +E+++ + +R +GN A HE G +++E+ L F+ ++
Sbjct: 65 DRMQTLRREGLLEKELYDMFDALRKKGNNAAHEAGYGTVKEAQALLLMAFRLGIWFMEVY 124
Query: 70 CDIVFTLPALIKEKKSTHPNQS 91
D F P I+ +K + S
Sbjct: 125 GDWDFEAPEYIEPEKEEKVDVS 146
>gi|300361369|ref|ZP_07057546.1| conserved hypothetical protein [Lactobacillus gasseri JV-V03]
gi|300353988|gb|EFJ69859.1| conserved hypothetical protein [Lactobacillus gasseri JV-V03]
Length = 205
Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSI-EESDECLEFVNLFC 70
+ + YL +++ + + +W + +R GN+A HE Q + E++ + ++F +
Sbjct: 127 KDNLKFVEYVNYLNENHFVSVKSHDWVDQIRKYGNEANHEIQVNTKEDAQKIIKFCEMIL 186
Query: 71 DIVFTLPALI 80
+ + P+ I
Sbjct: 187 KMNYEYPSEI 196
>gi|184155147|ref|YP_001843487.1| hypothetical protein LAF_0671 [Lactobacillus fermentum IFO 3956]
gi|183226491|dbj|BAG27007.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
Length = 229
Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVF 74
YL ++ + E+ EW + +R EGN A H + + ++ L+FV + I F
Sbjct: 126 VDYLVENGYVPEKSREWIDKIRTEGNSATHNQTAKNKSDAQRILDFVQMLLLINF 180
>gi|323697975|ref|ZP_08109887.1| Type I site-specific deoxyribonuclease [Desulfovibrio sp. ND132]
gi|323457907|gb|EGB13772.1| Type I site-specific deoxyribonuclease [Desulfovibrio desulfuricans
ND132]
Length = 1122
Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLF 69
R L L+ +I + + +R GN A HE + + + + L F +
Sbjct: 74 IRRLDDEGLLTPKINQVLHILRKAGNVAAHELEGEPQHALDALRFARIL 122
>gi|149179563|ref|ZP_01858098.1| hypothetical protein PM8797T_03705 [Planctomyces maris DSM 8797]
gi|148841598|gb|EDL56026.1| hypothetical protein PM8797T_03705 [Planctomyces maris DSM 8797]
Length = 238
Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 4 DQGQRINFEKCG------MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSI 56
DQG+ + G L + L LI + + + +R GN + H Q +
Sbjct: 144 DQGKLVRERATGKIVLRSNLEGKINGLWMKGLISKNQSKVLHQLRRLGNDSAHALDQPPL 203
Query: 57 EESDECLEFVNLFCDIVFTLPALIKEKKSTHPNQ 90
+ +EC+E + V+ P L+ K+ + +
Sbjct: 204 KLIEECIEALEHLLIQVYDQPELL--KRLMNRKK 235
>gi|90022721|ref|YP_528548.1| methyl-accepting chemotaxis sensory transducer [Saccharophagus
degradans 2-40]
gi|89952321|gb|ABD82336.1| methyl-accepting chemotaxis sensory transducer [Saccharophagus
degradans 2-40]
Length = 232
Score = 40.4 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIE-----ESDECLEFVNLFCDIV 73
D + + + +I +W++ +RI GN H + +++ +S+E +FV+ F
Sbjct: 147 DLIKQINSLASLPGDIKDWAHQIRIFGNWGAHPDRDNLKNIEATDSEEVHDFVSKFFMYT 206
Query: 74 FTLPALIKEKKSTHPNQ 90
F +P +K + +
Sbjct: 207 FIMPEKVKLSRIRRDEK 223
>gi|167771151|ref|ZP_02443204.1| hypothetical protein ANACOL_02506 [Anaerotruncus colihominis DSM
17241]
gi|167666821|gb|EDS10951.1| hypothetical protein ANACOL_02506 [Anaerotruncus colihominis DSM
17241]
Length = 80
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLEFVNLFCDIVFTLPAL 79
YL+ + I + W + +R GNK VH+ +++ E++ + + F+ ++ +P L
Sbjct: 19 IDYLEANGYIGVQNKAWVDKIRTIGNKYVHQLDEATEEDARKVILFLKQLLGNLYEMPQL 78
>gi|160935960|ref|ZP_02083334.1| hypothetical protein CLOBOL_00855 [Clostridium bolteae ATCC
BAA-613]
gi|158441202|gb|EDP18919.1| hypothetical protein CLOBOL_00855 [Clostridium bolteae ATCC
BAA-613]
Length = 331
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
G LSD L + I + + + +RI GNKAVHEG + ++++ + +
Sbjct: 56 GDLSDTIDQLYEGQWINKATKDNYHTIRILGNKAVHEGDDTAYDANQAFQLL 107
>gi|260845531|ref|YP_003223309.1| hypothetical protein ECO103_3438 [Escherichia coli O103:H2 str.
12009]
gi|257760678|dbj|BAI32175.1| hypothetical protein ECO103_3438 [Escherichia coli O103:H2 str.
12009]
Length = 209
Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCD 71
++D + L + L I + ++ RI GN+AVH G+ S+E+ + + +N+ D
Sbjct: 119 NINDDIKSLVEKGLPPR-IQQAADICRIVGNQAVHPGEISLEDDPQLTHGLFKLLNIIVD 177
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 178 DRITRPKEIEAMFQSMPEGPRQG 200
>gi|206577454|ref|YP_002236657.1| hypothetical protein KPK_0785 [Klebsiella pneumoniae 342]
gi|206566512|gb|ACI08288.1| conserved hypothetical protein [Klebsiella pneumoniae 342]
Length = 210
Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ + L + L + I + ++ RI GN+AVH G+ + + + +N+ D
Sbjct: 119 NINADIKSLVEKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLAHGLFKLLNIIVD 177
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 178 DRITRPKEIEAMFQSMPEGPRQG 200
>gi|309793931|ref|ZP_07688356.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308122338|gb|EFO59600.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 219
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ R L Q L + I + ++ RI GN+AVH G+ + + + +N+ D
Sbjct: 121 NINKDIRSLVQKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLAHGLFKLLNIIVD 179
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 180 DRITRPKEIEAMFQSMPEGPRQG 202
>gi|283788456|ref|YP_003368321.1| hypothetical protein ROD_49471 [Citrobacter rodentium ICC168]
gi|282951910|emb|CBG91628.1| hypothetical protein ROD_49471 [Citrobacter rodentium ICC168]
Length = 209
Score = 39.6 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCD 71
++D + L + L I + ++ RI GN+AVH G+ S+++ + + +N+ D
Sbjct: 119 NINDDIKSLVEKGLPPR-IQQAADICRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIVD 177
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 178 DRITRPKEIEAMFQSMPEGPRQG 200
>gi|323963885|gb|EGB59379.1| hypothetical protein ERJG_04731 [Escherichia coli M863]
gi|327252357|gb|EGE64029.1| hypothetical protein ECSTEC7V_3209 [Escherichia coli STEC_7v]
Length = 73
Score = 39.6 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 21 TRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTLPALI 80
+L ++L+ E + E + V+ +GN HEG +++ +F LF + ++T P +
Sbjct: 1 MEWLFDNHLLPEALRELAECVKDDGNDGAHEGILDKAAAEDLEDFTYLFLERLYTEPQRL 60
Query: 81 KEKKS 85
E K+
Sbjct: 61 IEAKT 65
>gi|332533299|ref|ZP_08409165.1| hypothetical protein PH505_ao00110 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037181|gb|EGI73637.1| hypothetical protein PH505_ao00110 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 266
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 4 DQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDEC- 62
+ G++I+ + ++S L Q L + VR+ GN+AVH G+ +++ E
Sbjct: 171 ETGKKIDKDIASLVSKGLNPLVQQAL---------DIVRVVGNEAVHPGEIDFKDNKEIA 221
Query: 63 ---LEFVNLFCDIVFTLPALIKEKKSTHPNQSRDG 94
VNL CD + T P +KE P +G
Sbjct: 222 LKLFGLVNLICDQMITHPKQVKELYGDLPKDKLEG 256
>gi|323486841|ref|ZP_08092159.1| N-acetylmuramoyl-L-alanine amidase [Clostridium symbiosum
WAL-14163]
gi|323690859|ref|ZP_08105153.1| hypothetical protein HMPREF9475_00014 [Clostridium symbiosum
WAL-14673]
gi|323399854|gb|EGA92234.1| N-acetylmuramoyl-L-alanine amidase [Clostridium symbiosum
WAL-14163]
gi|323505078|gb|EGB20846.1| hypothetical protein HMPREF9475_00014 [Clostridium symbiosum
WAL-14673]
Length = 293
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
G L D L +I + E + +R GNKA+HE +S +++ +L V+
Sbjct: 58 GNLIDMIDGLYDDGIISKTTCEHYHKIRTIGNKAIHEEDNSAYNANQA---HHLLSQEVY 114
Query: 75 TLPALIKEKK 84
T E++
Sbjct: 115 TFANDYNERR 124
>gi|260856986|ref|YP_003230877.1| hypothetical protein ECO26_3952 [Escherichia coli O26:H11 str.
11368]
gi|257755635|dbj|BAI27137.1| hypothetical protein ECO26_3952 [Escherichia coli O26:H11 str.
11368]
Length = 174
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ R L Q L + I + ++ RI GN+AVH G+ + + + +N+ D
Sbjct: 76 NINKDIRSLVQKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLAHGLFKLLNIIVD 134
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 135 DRITRPKEIEAMFQSMPEGPRQG 157
>gi|297582111|ref|ZP_06944029.1| predicted protein [Vibrio cholerae RC385]
gi|297533631|gb|EFH72474.1| predicted protein [Vibrio cholerae RC385]
Length = 248
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLEFVNLFCDIVF 74
L + L + L+ E + R GNKAVHE S+EE ++ V + ++
Sbjct: 170 NLEGQISGLHEKGLLTEAHSSILHEHRFMGNKAVHELDMPSLEELKIAIDIVEHTLENIY 229
Query: 75 TLPALIKEKKS 85
LP E ++
Sbjct: 230 ELPEKASELRA 240
>gi|114777354|ref|ZP_01452351.1| hypothetical protein SPV1_13679 [Mariprofundus ferrooxydans PV-1]
gi|114552136|gb|EAU54638.1| hypothetical protein SPV1_13679 [Mariprofundus ferrooxydans PV-1]
Length = 212
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSS----IEESDECLEFVN 67
E +++ L + L + + + VR+ GN+AVH G E + VN
Sbjct: 121 ESGKNINNDIAALVKKGL-NPTLQKSLDVVRVIGNEAVHPGTIDLNDEPETAIALFNLVN 179
Query: 68 LFCDIVFTLPALIKEKKSTHPNQSRD 93
+ + T P +I+ + P++ R+
Sbjct: 180 IITQAMITQPKMIESLYESLPDEKRN 205
>gi|225420319|ref|ZP_03762622.1| hypothetical protein CLOSTASPAR_06662 [Clostridium asparagiforme
DSM 15981]
gi|225041005|gb|EEG51251.1| hypothetical protein CLOSTASPAR_06662 [Clostridium asparagiforme
DSM 15981]
Length = 145
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE 61
G LSD L + I + + +RI GNKAVHEG + ++++
Sbjct: 56 GDLSDTIDQLYEGRWISRNTKDHYHNIRILGNKAVHEGDDTAYDANQ 102
>gi|320450644|ref|YP_004202740.1| hypothetical protein TSC_c15760 [Thermus scotoductus SA-01]
gi|320150813|gb|ADW22191.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 148
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVH---------EGQSSIEESDECLEF 65
G L+DR + + + + ++ + +R+ GN A H +GQ E EF
Sbjct: 58 GSLADRLKRAHEEGKLTTQTYKLAGVLRLAGNAAAHYELWKIDPSQGQEDREMILALFEF 117
Query: 66 VNLFCDIVFTLPALIKEKKSTHPNQSRD 93
+N + + P ++E + + R+
Sbjct: 118 LNEVTEELIAKPKRLEEMEQKLSRKLRE 145
>gi|229542891|ref|ZP_04431951.1| type III restriction protein res subunit [Bacillus coagulans 36D1]
gi|229327311|gb|EEN92986.1| type III restriction protein res subunit [Bacillus coagulans 36D1]
Length = 1071
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEESDECLE--------FVNLF 69
DR L++ LI E+ + +R +GN+A+HE + + EE+ L F+ ++
Sbjct: 67 DRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEEAKALLRLAFRLSIWFMEVY 126
Query: 70 CDIVFTLPALIKEKK 84
+ F P I+ K+
Sbjct: 127 GEWDFQAPEYIEPKE 141
>gi|311111507|ref|ZP_07712904.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|311066661|gb|EFQ47001.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
Length = 187
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSI-EESDECLEFVNLFC 70
+ + YL +++ + + +W + +R GN+A HE Q + E++ + ++F +
Sbjct: 127 KDNLKFVEYVNYLNENHFVSVKSHDWVDQIRKYGNEATHEIQVNTKEDAQKIIKFCEMIL 186
>gi|301643791|ref|ZP_07243828.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|301077824|gb|EFK92630.1| conserved hypothetical protein [Escherichia coli MS 146-1]
Length = 150
Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCD 71
++ + L + L + I + ++ RI GN+AVH G+ S+++ + + +N+ D
Sbjct: 59 NINADIKSLVEKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIVD 117
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 118 DRITRPKEIEAMFQSMPEGPRQG 140
>gi|295401702|ref|ZP_06811669.1| type III restriction protein res subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976322|gb|EFG51933.1| type III restriction protein res subunit [Geobacillus
thermoglucosidasius C56-YS93]
Length = 1123
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE- 64
+ I E+ +R R L +I +EI++ +R++GN+AVH + E+ L
Sbjct: 94 EEIREERGTDQQERLRVLFYEQIIPKEIYDLLTVIRLKGNEAVHNPSYGEVNEAKALLHM 153
Query: 65 -------FVNLFCDIVFTLPALIK 81
F+ ++ D F P I+
Sbjct: 154 AFRIAVWFMEVYGDWSFQAPEYIE 177
>gi|213022360|ref|ZP_03336807.1| hypothetical protein Salmonelentericaenterica_06794 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 217
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ R L + L + I + ++ RI GN+AVH G+ + + + +N+ D
Sbjct: 119 NINTDIRSLVKKGLPVR-IQQAADICRIVGNQAVHPGEINLDDDPKLAHGLFKLLNIIVD 177
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P +++ + P R G
Sbjct: 178 DQITRPKELEDMFLSMPEGPRQG 200
>gi|240146119|ref|ZP_04744720.1| type I restriction-modification system, R subunit [Roseburia
intestinalis L1-82]
gi|257201772|gb|EEV00057.1| type I restriction-modification system, R subunit [Roseburia
intestinalis L1-82]
Length = 1091
Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 8 RINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
RI R L++ L+ ++ + + +R NKAVHE S+ E LE
Sbjct: 53 RIQLPYDNTAVTRIDNLQREGLLTRDLTDILHALRKARNKAVHENYESVSECKILLEMAY 112
Query: 68 LFCDI 72
C+
Sbjct: 113 SLCEW 117
>gi|323141888|ref|ZP_08076749.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
12067]
gi|322413635|gb|EFY04493.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
12067]
Length = 1091
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 2 KDDQGQRINFEKCGM-------LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS 54
+D + +F+ M L ++ R L+ I E++ + +R+ GN+A HEG
Sbjct: 42 EDIVNKMFDFDNIVMPYQMKDTLVNKIRLLENEEYITEDLARIMHRLRLGGNEARHEGTD 101
Query: 55 SIEESDECL 63
S++++ L
Sbjct: 102 SLQKAKLLL 110
>gi|187734081|ref|YP_001881654.1| hypothetical protein SbBS512_E3301 [Shigella boydii CDC 3083-94]
gi|187431073|gb|ACD10347.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
Length = 212
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ R L Q L + I + ++ RI GN+AVH G+ + + + +N+
Sbjct: 114 NINADIRSLVQKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLAHGLFKLLNIIVT 172
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 173 EQITRPKEIEAMFQSMPEGPRQG 195
>gi|312972898|ref|ZP_07787071.1| hypothetical protein EC182770_3443 [Escherichia coli 1827-70]
gi|310332840|gb|EFQ00054.1| hypothetical protein EC182770_3443 [Escherichia coli 1827-70]
Length = 132
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTL 76
++D L Q L EEI + + R+ GN AVH G+ +I++S E +F L
Sbjct: 45 INDDIATLVQKGL-PEEIQQALDICRVVGNNAVHPGEINIDDSPEIAA-------SLFGL 96
Query: 77 PALIKEKKSTHPNQ 90
LI E++ T P +
Sbjct: 97 INLIVEERITRPQK 110
>gi|138894433|ref|YP_001124886.1| type I restriction enzyme EcoKI subunit R [Geobacillus
thermodenitrificans NG80-2]
gi|134265946|gb|ABO66141.1| Type I restriction enzyme EcoKI R protein [Geobacillus
thermodenitrificans NG80-2]
Length = 1081
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE- 64
+ I E+ +R R L +I +EI++ +R++GN+AVH + E+ L
Sbjct: 52 EEIREERGTDQQERLRILFYEQIIPKEIYDLFTVIRLKGNEAVHNPSYGEVNEAKALLHM 111
Query: 65 -------FVNLFCDIVFTLPALIK 81
F+ ++ D F P I+
Sbjct: 112 AFRIAVWFMEVYGDWSFQTPEYIE 135
>gi|256024627|ref|ZP_05438492.1| hypothetical protein E4_14714 [Escherichia sp. 4_1_40B]
Length = 213
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCD 71
++ + L + L I + ++ RI GN+AVH G+ S+++ + + +N+ D
Sbjct: 123 NINADIKSLVEKGLPPR-IQQAADVCRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIVD 181
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 182 DRITRPKEIEAMFQSMPEGPRQG 204
>gi|52144400|ref|YP_082428.1| hypothetical protein BCZK0824 [Bacillus cereus E33L]
gi|51977869|gb|AAU19419.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 754
Score = 37.3 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVFT 75
L D+ YL + I E+ + VR GNKA H+G I + + + ++ ++
Sbjct: 65 LYDKISYLAKEGYITAEVQRDFDTVRFTGNKAAHDGSFNDISAAFKLHKVMHNIAVWLYE 124
Query: 76 L--PALIKEKKSTHP 88
+ P +K HP
Sbjct: 125 VYSPEQLKIPAYEHP 139
>gi|300947579|ref|ZP_07161753.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300452830|gb|EFK16450.1| conserved hypothetical protein [Escherichia coli MS 116-1]
Length = 210
Score = 36.9 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCD 71
++ + L + L I + ++ RI GN+AVH G+ S+++ + + +N+ D
Sbjct: 119 NINKDIKSLVEKGLPPR-IQQAADICRIVGNQAVHPGEISLDDDPQLTHGLFKLLNIIVD 177
Query: 72 IVFTLPALIKEKKSTHPNQSRD 93
T P I+ + P R
Sbjct: 178 DRITRPKEIEAMFQSMPEGPRQ 199
>gi|228926089|ref|ZP_04089167.1| hypothetical protein bthur0010_8110 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228833582|gb|EEM79141.1| hypothetical protein bthur0010_8110 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 754
Score = 36.9 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQS-SIEESDECLEFVNLFCDIVFT 75
L D+ YL + I E+ + VR GNKA H+G I + + + ++ ++
Sbjct: 65 LYDKISYLAKEGYITAEVQRDFDTVRFTGNKAAHDGSFNDISAAFKLHKVMHNIAVWLYE 124
Query: 76 L--PALIKEKKSTHP 88
+ P +K HP
Sbjct: 125 VYSPEQLKIPAYEHP 139
>gi|120600671|ref|YP_965245.1| Sel1 domain-containing protein [Shewanella sp. W3-18-1]
gi|146291428|ref|YP_001181852.1| Sel1 domain-containing protein [Shewanella putrefaciens CN-32]
gi|120560764|gb|ABM26691.1| Sel1 domain protein repeat-containing protein [Shewanella sp.
W3-18-1]
gi|145563118|gb|ABP74053.1| Sel1 domain protein repeat-containing protein [Shewanella
putrefaciens CN-32]
Length = 484
Score = 36.9 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLE 64
Q +RI F L DR L Q LI + + +R +GN+ H + + + ++ L
Sbjct: 55 QDKRIEFSSP-NLYDRIEQLNQKRLIDVKTTRALHRLRADGNRGAHPEKYHLTQ-EQLLA 112
Query: 65 FVNLFCDIVFTLPA 78
V TL
Sbjct: 113 LAQKTIKDVLTLVE 126
>gi|319428341|gb|ADV56415.1| Sel1 domain protein repeat-containing protein [Shewanella
putrefaciens 200]
Length = 484
Score = 36.9 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLE 64
Q +RI F L DR L Q LI + + +R +GN+ H + + + ++ L
Sbjct: 55 QDKRIEFSSP-NLYDRIEQLNQKRLIDVKTTRALHRLRADGNRGAHPEKYHLTQ-EQLLA 112
Query: 65 FVNLFCDIVFTLPA 78
V TL
Sbjct: 113 LAQKTIKDVLTLVE 126
>gi|323154740|gb|EFZ40938.1| hypothetical protein ECEPECA14_3348 [Escherichia coli EPECa14]
Length = 108
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCD 71
++ R L Q L + I + ++ RI GN+AVH G+ + + + +N+ D
Sbjct: 10 NINKDIRSLVQKGLPVR-IQQAADICRIVGNQAVHPGEISLDDDPQLAHGLFKLLNIIVD 68
Query: 72 IVFTLPALIKEKKSTHPNQSRDG 94
T P I+ + P R G
Sbjct: 69 DRITRPKEIEAMFQSMPEGPRQG 91
>gi|260663335|ref|ZP_05864226.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260552187|gb|EEX25239.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 204
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ-SSIEESDECLEFVNLFCDIVFT 75
YL +H+ EW + +R GN+A HE + ++ EE+ ++F + + +
Sbjct: 133 FIQYVGYLNEHHYAGARSDEWVDQIRQFGNQANHEIRINTKEEAKRIIKFCEMILKLNYE 192
Query: 76 LPALIKEKKSTH 87
P++ + S +
Sbjct: 193 YPSIAYDNDSNN 204
>gi|282900741|ref|ZP_06308683.1| hypothetical protein CRC_02103 [Cylindrospermopsis raciborskii
CS-505]
gi|281194541|gb|EFA69496.1| hypothetical protein CRC_02103 [Cylindrospermopsis raciborskii
CS-505]
Length = 190
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 29/58 (50%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
L ++ ++Q +I ++ W++ +R++ + + ++ + +E +L + +F
Sbjct: 116 LKEKLEIMRQQEIINHHLYSWASNLRLQDLSHEVDINFNQNDAQQIVELTDLLIEYIF 173
>gi|269976585|ref|ZP_06183570.1| type I restriction enzyme EcoKI R protein [Mobiluncus mulieris
28-1]
gi|269935386|gb|EEZ91935.1| type I restriction enzyme EcoKI R protein [Mobiluncus mulieris
28-1]
Length = 1085
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 20 RTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
R L++ L+ +++ + +R NKAVHEG + + L ++
Sbjct: 65 RIDTLQREGLLPQDVVNVLHILRKARNKAVHEGWGDTDTATRFLPVIH 112
>gi|289583327|ref|YP_003481737.1| hypothetical protein Nmag_3626 [Natrialba magadii ATCC 43099]
gi|289532825|gb|ADD07175.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
Length = 213
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ----SSIEESDECLEFVNLFCDI 72
L L I E + + + VR+ GN VH G+ E + E VN+ ++
Sbjct: 126 LYQNIGDLVDDGQIDERVQQALDSVRVTGNDYVHAGEIYNPDDREVALRLFELVNIIVEL 185
Query: 73 VFTLPALIKEKKSTHPNQSRDG 94
T LI+E S P + G
Sbjct: 186 TITREKLIEEAYSDIPENKKKG 207
>gi|223934041|ref|ZP_03625994.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gi|223897298|gb|EEF63706.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 239
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDI 72
L+ + L + I EI + + VR+ GN AVH GQ I+++ E L FVNL D
Sbjct: 153 LNKKIGNLVAKGMPI-EIQQMLDSVRVIGNNAVHPGQIEIQDNKELALSLLNFVNLITDS 211
Query: 73 VFTLPALIKE 82
+ P I E
Sbjct: 212 QISQPKKIAE 221
>gi|323136161|ref|ZP_08071243.1| Type I site-specific deoxyribonuclease [Methylocystis sp. ATCC
49242]
gi|322398235|gb|EFY00755.1| Type I site-specific deoxyribonuclease [Methylocystis sp. ATCC
49242]
Length = 1106
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 9 INFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEES 59
+ ++ + R L+Q L+ + + +F R GN AVHE + E++
Sbjct: 37 LGIDRRANFDEMLRVLRQEGLLPRQAADVFHFFRKVGNLAVHENSGTPEQA 87
>gi|261419105|ref|YP_003252787.1| type I restriction enzyme EcoKI subunit R [Geobacillus sp.
Y412MC61]
gi|319765922|ref|YP_004131423.1| type I site-specific deoxyribonuclease [Geobacillus sp. Y412MC52]
gi|261375562|gb|ACX78305.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
gi|317110788|gb|ADU93280.1| Type I site-specific deoxyribonuclease [Geobacillus sp. Y412MC52]
Length = 1080
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 18 SDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNL 68
DR + L +I +EI++ +R++GN+AVH+ + E+ L F+ +
Sbjct: 63 QDRLKVLLYEQIIPKEIYDIFTMIRLKGNQAVHDPNYGDVHEAKTLLHMAFRLAVWFMEV 122
Query: 69 FCDIVFTLPALIKEKKSTHPNQSRD 93
+ D F P + ++S D
Sbjct: 123 YGDWSFEAPQY--REPLPSSSESTD 145
>gi|297530926|ref|YP_003672201.1| type I site-specific deoxyribonuclease [Geobacillus sp. C56-T3]
gi|297254178|gb|ADI27624.1| Type I site-specific deoxyribonuclease [Geobacillus sp. C56-T3]
Length = 1080
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 18 SDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNL 68
DR + L +I +EI++ +R++GN+AVH+ + E+ L F+ +
Sbjct: 63 QDRLKVLLYEQIIPKEIYDIFTMIRLKGNQAVHDPNYGDVHEAKTLLHMAFRLAVWFMEV 122
Query: 69 FCDIVFTLPALIKEKKSTHPNQSRD 93
+ D F P + ++S D
Sbjct: 123 YGDWSFEAPQY--REPLPSSSESTD 145
>gi|91787108|ref|YP_548060.1| hypothetical protein Bpro_1211 [Polaromonas sp. JS666]
gi|91696333|gb|ABE43162.1| conserved hypothetical protein [Polaromonas sp. JS666]
Length = 199
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG--QSSIEESDECLEFVNLFCDIVF 74
L+ + LK +I E IF W +R N H + + E++ + L+F C+ V+
Sbjct: 124 LAAGLKKLKDDGVIDERIFNWGEALRENRNLGAHATAIKVTKEDARDLLDFGLAICEYVY 183
Query: 75 TLPALIKE 82
L
Sbjct: 184 VLNEKFNR 191
>gi|251798710|ref|YP_003013441.1| type I restriction enzyme EcoKI subunit R [Paenibacillus sp. JDR-2]
gi|247546336|gb|ACT03355.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
Length = 1083
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDE---- 61
+ ++ K DR LK+ +LI ++I ++ + +R GNKAVHE G S E+
Sbjct: 52 EEMDETKELTQVDRLSQLKRDDLISDDIVDYLHTLRKIGNKAVHESGYGSTREAQASTLL 111
Query: 62 ----CLEFVNLFCDIVFTLPALIK 81
+ F+ ++ D F P I+
Sbjct: 112 AFRLSVWFMQVYGDWNFQAPDYIE 135
>gi|157373391|ref|YP_001471991.1| Sel1 domain-containing protein [Shewanella sediminis HAW-EB3]
gi|157315765|gb|ABV34863.1| Sel1 domain protein repeat-containing protein [Shewanella sediminis
HAW-EB3]
Length = 472
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
+RI F+ L DR L + +I + +R +GN+ H + + S++ LE
Sbjct: 52 KRITFDSP-NLYDRIEMLNRKRVINVRTTRALHKLRGDGNRGAHPEKYHL-TSEQLLELS 109
Query: 67 NLFCDIVFTLPALIKEKKSTHP 88
+ + +L A + + +T+P
Sbjct: 110 EKSIEKLLSLVASLFTQVTTNP 131
>gi|300118619|ref|ZP_07056357.1| type I restriction enzyme EcoKI subunit R [Bacillus cereus SJ1]
gi|298724008|gb|EFI64712.1| type I restriction enzyme EcoKI subunit R [Bacillus cereus SJ1]
Length = 1437
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 21 TRYLKQHNLIIEEI---FEWSNFVRIEGNKAVHEGQ-SSIEES--------DECLEFVNL 68
L + ++ EE+ FEW +R GNKAVHE S+E++ D + F+ L
Sbjct: 68 IHKLYREGILNEEMHFRFEW---IRKMGNKAVHEANFGSVEDALKAHKLTYDLAVWFMEL 124
Query: 69 FCDIVFTLPALIKEKKSTHPNQSRD 93
+ D+ F PA K T + D
Sbjct: 125 YGDVNFKAPAYASPKAVTEQKVNTD 149
>gi|288559579|ref|YP_003423065.1| dnd system-associated protein 3 [Methanobrevibacter ruminantium M1]
gi|288542289|gb|ADC46173.1| dnd system-associated protein 3 [Methanobrevibacter ruminantium M1]
Length = 749
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 18 SDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL-EFVNLFCDIVF 74
R L +I +I++ N +R NKAVH S IE++ L ++ L C +
Sbjct: 65 KKRLEMLGYKGIISYDIYKRLNHIRKIRNKAVHGHLSDIEDNANILHAYLYLICAYFY 122
>gi|229096946|ref|ZP_04227915.1| hypothetical protein bcere0020_21930 [Bacillus cereus Rock3-29]
gi|228686556|gb|EEL40465.1| hypothetical protein bcere0020_21930 [Bacillus cereus Rock3-29]
Length = 244
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDI 72
K + + LK+ + I + +F+ + VR+ GN AVH G+ I+++ + + LF +
Sbjct: 165 KGNNIYQNIKLLKERDNINDVVFDALDAVRLVGNNAVHPGKIKIDDNPKIA--ITLFWLL 222
Query: 73 VFTLPALIKE 82
F + LI +
Sbjct: 223 NFIVEELISK 232
>gi|188589957|ref|YP_001921313.1| hypothetical protein CLH_1932 [Clostridium botulinum E3 str. Alaska
E43]
gi|188500238|gb|ACD53374.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 800
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEES 59
+R R L++ ++ E I + + VR+ GNKA H + +E +
Sbjct: 59 NTITQVERLRKLEEEGILTENIDKLFHVVRLLGNKAAHSNLEGELEAA 106
>gi|259503492|ref|ZP_05746394.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168570|gb|EEW53065.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 204
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ-SSIEESDECLEFVNLFCD 71
+ YL +H+ +W + +R GN+A HE + ++ EE+ ++F +
Sbjct: 130 DNLRFIEYVDYLNEHHYAGVRSEQWVDQIRQFGNQANHEIRINTKEEAQRIIKFCEMILK 189
Query: 72 IVFTLPALIK 81
+ + P++
Sbjct: 190 LNYEYPSIAS 199
>gi|149004391|ref|ZP_01829131.1| hypothetical protein CGSSp14BS69_07031 [Streptococcus pneumoniae
SP14-BS69]
gi|149004569|ref|ZP_01829262.1| hypothetical protein CGSSp14BS69_06037 [Streptococcus pneumoniae
SP14-BS69]
gi|147757543|gb|EDK64568.1| hypothetical protein CGSSp14BS69_06037 [Streptococcus pneumoniae
SP14-BS69]
gi|147757640|gb|EDK64658.1| hypothetical protein CGSSp14BS69_07031 [Streptococcus pneumoniae
SP14-BS69]
Length = 236
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDI 72
L+ + L + I EI + + VR+ GN AVH GQ I+++ E L F+NL D
Sbjct: 150 LNTQIGSLVSKGMPI-EIQQMLDSVRVIGNNAVHPGQIDIKDNKELALSLLSFINLIVDN 208
Query: 73 VFTLPALIKEKKSTHPNQSRD 93
T P I + + P+ R+
Sbjct: 209 RITQPKKILDIYNLLPDSYRN 229
>gi|297584947|ref|YP_003700727.1| hypothetical protein Bsel_2662 [Bacillus selenitireducens MLS10]
gi|297143404|gb|ADI00162.1| hypothetical protein Bsel_2662 [Bacillus selenitireducens MLS10]
Length = 397
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 14 CGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE 51
C L DR R LK H E++ + +R GN A HE
Sbjct: 62 CENLLDRIRLLKSHGKCSEDVLNAIHEIRKAGNSAAHE 99
>gi|291485261|dbj|BAI86336.1| hypothetical protein BSNT_04129 [Bacillus subtilis subsp. natto
BEST195]
Length = 1068
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLE--------FVNLF 69
DR L++ L+ E+ + +R +GN A+HE +EE+ L+ F+ ++
Sbjct: 64 DRINTLRRERLLEPELIDILEALRRKGNVAMHEADYGKVEEAKALLQLTFRLSIWFMEVY 123
Query: 70 CDIVFTLPALIKEKKSTHPNQSRD 93
D F P + ++ QS +
Sbjct: 124 GDWDFQAPEYTELQEQV--EQSTE 145
>gi|253583388|ref|ZP_04860586.1| type I restriction enzyme EcoKI subunit R [Fusobacterium varium
ATCC 27725]
gi|251833960|gb|EES62523.1| type I restriction enzyme EcoKI subunit R [Fusobacterium varium
ATCC 27725]
Length = 1088
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
+++N + G DR + LK ++LI E+I +R +GN AVH + E++ L V
Sbjct: 52 EKLNEPESGSQLDRIKILKTYDLIPEDIENILQLIRKKGNTAVHNMSGNESEAETLLSLV 111
Query: 67 NLFC 70
C
Sbjct: 112 VKLC 115
>gi|217971401|ref|YP_002356152.1| Sel1 domain-containing protein repeat-containing protein
[Shewanella baltica OS223]
gi|217496536|gb|ACK44729.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS223]
Length = 491
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Q ++I F L DR L Q +I + + +R +GN+ H + + ++
Sbjct: 55 QDKQIAFSSP-NLYDRIEQLNQQRVIDVKTTRALHRLRADGNRGAHPEKYHLTQAQ 109
>gi|288576378|ref|ZP_05978685.2| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
gi|288565657|gb|EFC87217.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
Length = 233
Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCD 71
E+ ++ R L + ++ ++ + ++ +RI GN AVH GQ E+ D+ +F
Sbjct: 124 EEGKNINTDIRSLVKKEVLSGQVVKVADTLRITGNNAVHPGQIVDEDFDKVAA--KMFDL 181
Query: 72 IVFTLPALIKEKK 84
I F + I E K
Sbjct: 182 INFIVKKAITEPK 194
>gi|171779682|ref|ZP_02920638.1| hypothetical protein STRINF_01519 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281784|gb|EDT47218.1| hypothetical protein STRINF_01519 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 244
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE----CLEFVNLFCDI 72
L+++ YL + + I EI + + VR+ GN AVH GQ ++++ E L FVNL D
Sbjct: 158 LNNKIGYLVRQGMPI-EIQQMLDSVRVVGNNAVHPGQIDLKDNKELAASLLTFVNLIVDN 216
Query: 73 VFTLPALIKE 82
+ P IK
Sbjct: 217 RISQPKKIKS 226
>gi|74316944|ref|YP_314684.1| hypothetical protein Tbd_0926 [Thiobacillus denitrificans ATCC
25259]
gi|74056439|gb|AAZ96879.1| hypothetical protein Tbd_0926 [Thiobacillus denitrificans ATCC
25259]
Length = 216
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEESDECLEFVNLFCDIV 73
G S + L++H I + E + GN A H G Q + ++ + ++ V V
Sbjct: 135 GSFSAKLDALEKHGAIGAKSKEILHAALDAGNAASHRGYQPTTDDINAVMDIVENLLQAV 194
Query: 74 FTLPALIKEKKSTHPNQSRD 93
+ L L + K P +S+
Sbjct: 195 YHLKTLAESLKKATPTRSQK 214
>gi|283797584|ref|ZP_06346737.1| N-acetylmuramoyl-L-alanine amidase [Clostridium sp. M62/1]
gi|291074693|gb|EFE12057.1| N-acetylmuramoyl-L-alanine amidase [Clostridium sp. M62/1]
Length = 306
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE--------GQSSIEESDECLEFVNL 68
L D L ++ +I + E + +R+ GNKAVHE GQ+ S E F N
Sbjct: 59 LVDMIDALYENGIINKTTCEHYHKIRMIGNKAVHEEDNLAYNAGQAYHLLSQEIYTFAND 118
Query: 69 F 69
F
Sbjct: 119 F 119
>gi|150388682|ref|YP_001318731.1| type I restriction enzyme EcoKI subunit R [Alkaliphilus
metalliredigens QYMF]
gi|149948544|gb|ABR47072.1| type III restriction protein, res subunit [Alkaliphilus
metalliredigens QYMF]
Length = 1086
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
+R + LK+ LI + I + +RI NKAVH G S E+ LE +
Sbjct: 65 NRIKLLKKEGLISQNIDDIIYSLRIARNKAVHSGYDSFEDCVILLEMGH 113
>gi|282897432|ref|ZP_06305434.1| hypothetical protein CRD_02356 [Raphidiopsis brookii D9]
gi|281198084|gb|EFA72978.1| hypothetical protein CRD_02356 [Raphidiopsis brookii D9]
Length = 190
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 7/58 (12%), Positives = 29/58 (50%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVF 74
L ++ ++Q +I ++ W++ ++++ + + ++ + +E +L + +F
Sbjct: 116 LKEKLEIMRQQEIINHHLYNWASNLKLQDLSCDVDINFNQNDAQQIVELTDLVIEYIF 173
>gi|315650928|ref|ZP_07903969.1| N-acetylmuramoyl-L-alanine amidase [Eubacterium saburreum DSM 3986]
gi|315486842|gb|EFU77183.1| N-acetylmuramoyl-L-alanine amidase [Eubacterium saburreum DSM 3986]
Length = 293
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEES 59
L+D L N+I ++ E + +R+ GNKAVH+ +
Sbjct: 58 LADIIDSLYTSNIISQKSCEHYHKIRVIGNKAVHDNSDDSYSA 100
>gi|302874004|ref|YP_003842637.1| Type I site-specific deoxyribonuclease [Clostridium cellulovorans
743B]
gi|307689747|ref|ZP_07632193.1| type I restriction enzyme EcoKI subunit R [Clostridium
cellulovorans 743B]
gi|302576861|gb|ADL50873.1| Type I site-specific deoxyribonuclease [Clostridium cellulovorans
743B]
Length = 1085
Score = 34.6 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFV 66
++R + LK+ +LI E+I + +RI+ N A H+G +E++ LE
Sbjct: 63 NHNNRIKLLKKEDLIPEDIDNILHMLRIKRNSAAHQGYEDVEKAKVQLELT 113
>gi|227820719|ref|YP_002824689.1| type I restriction enzyme EcoKI subunit R [Sinorhizobium fredii
NGR234]
gi|227339718|gb|ACP23936.1| putative restriction endonuclease type I with R subunit / type III
with Res subunit [Sinorhizobium fredii NGR234]
Length = 1140
Score = 34.6 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
D R L ++ E+ + + VR GN+A H S E+ L+F
Sbjct: 69 DLLRRLATQQILPREVADIFHAVRKSGNEATHNLAGSPTEALAALKFCR 117
>gi|228964014|ref|ZP_04125144.1| hypothetical protein bthur0004_8740 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228795666|gb|EEM43143.1| hypothetical protein bthur0004_8740 [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 1430
Score = 34.6 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 21 TRYLKQHNLIIEEI---FEWSNFVRIEGNKAVHEGQ-SSIEES--------DECLEFVNL 68
L + ++ EE+ FEW +R GNKAVHE SIE++ D + F+ L
Sbjct: 68 IHKLYREGILNEEMHFRFEW---IRKMGNKAVHEANFGSIEDALKAHKLTYDLAVWFMEL 124
Query: 69 FCDIVFTLPALIKEKKSTHPNQSRD 93
+ D+ F PA K + + D
Sbjct: 125 YGDVNFKAPAYASPKANAEQKVNTD 149
>gi|160877378|ref|YP_001556694.1| Sel1 domain-containing protein [Shewanella baltica OS195]
gi|160862900|gb|ABX51434.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS195]
gi|315269581|gb|ADT96434.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS678]
Length = 491
Score = 34.6 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Q ++I F L DR L Q +I + + +R +GN+ H + + ++
Sbjct: 55 QDKQIAFSSP-NLYDRIEQLNQQRVIDVKTTRALHRLRADGNRGAHPEKYHLTQAQ 109
>gi|209526219|ref|ZP_03274749.1| type III restriction protein res subunit [Arthrospira maxima
CS-328]
gi|209493316|gb|EDZ93641.1| type III restriction protein res subunit [Arthrospira maxima
CS-328]
Length = 1128
Score = 34.6 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
D + LK +I E+ + + +RI GN+A HE + L+
Sbjct: 67 DLLKRLKFQRVISPEVADLFHQIRIAGNRATHEYIGDHRSALTMLKMAR 115
>gi|194466767|ref|ZP_03072754.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
gi|194453803|gb|EDX42700.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
Length = 202
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHE-GQSSIEESDECLEFVNLFCDIVFT 75
YL +++ +W N +R GN+A HE +S EE+ ++F + + +
Sbjct: 132 FIQYVNYLNENHYAGARSEQWINQIRQFGNQANHEIIINSKEEAQRIIKFCEMILKLNYE 191
Query: 76 LPALIK 81
P++
Sbjct: 192 YPSIAS 197
>gi|295115044|emb|CBL35891.1| Bacterial SH3 domain. [butyrate-producing bacterium SM4/1]
Length = 306
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ 53
L D L ++ +I + E + +R+ GNKAVHE
Sbjct: 59 LVDMIDALYENGIINKTTCEHYHKIRMIGNKAVHEED 95
>gi|257452213|ref|ZP_05617512.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
gi|317058756|ref|ZP_07923241.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
gi|313684432|gb|EFS21267.1| type I restriction enzyme EcoKI subunit R [Fusobacterium sp.
3_1_5R]
Length = 1088
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 7 QRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLE-- 64
+RI+ K M SDR LK++ LI E+I + +R +GNKAVH E ++ L
Sbjct: 52 ERISDSKKNMASDRLLALKKYELIPEDIEKILTTLRKKGNKAVHGIYGDEETAETLLSMA 111
Query: 65 ------FVNLF-CDIVFTLPALIKEK 83
F ++ D+ FT +I +K
Sbjct: 112 VKVAAWFQEVYGSDLSFTSEEIIYQK 137
>gi|295089932|emb|CBK76039.1| Bacterial SH3 domain. [Clostridium cf. saccharolyticum K10]
Length = 306
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 17 LSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ 53
L D L ++ +I + E + +R+ GNKAVHE
Sbjct: 59 LVDMIDALYENGIINKTTCEHYHKIRMIGNKAVHEED 95
>gi|254455122|ref|ZP_05068557.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
gi|198263532|gb|EDY87804.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
Length = 276
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLE 64
+G+ I+ + L L ++I + +R+ GN++VH G+ + + +
Sbjct: 186 EGKSID--------KDIKALVAKGL-SQKIQRALDVLRVVGNESVHPGELDMRDDSQTA- 235
Query: 65 FVNLFCDIVFTLPALIKEKKSTH 87
+ LF + A+I E+K +
Sbjct: 236 -LKLFNVFNLIVNAMISEEKLIN 257
>gi|331270258|ref|YP_004396750.1| hypothetical protein CbC4_2086 [Clostridium botulinum BKT015925]
gi|329126808|gb|AEB76753.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
Length = 790
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEESDECLE--------FVNLF 69
+R R L+ +I EI + + VR+ GNKA HE + +E + + FV +
Sbjct: 65 ERLRKLENEGVIEGEIDKLFHTVRLLGNKAAHEDVEGELEVALNIHKNIYKITCWFVESY 124
Query: 70 CDIVFT 75
D F
Sbjct: 125 IDYNFE 130
>gi|89901611|ref|YP_524082.1| hypothetical protein Rfer_2839 [Rhodoferax ferrireducens T118]
gi|89346348|gb|ABD70551.1| hypothetical protein Rfer_2839 [Rhodoferax ferrireducens T118]
Length = 271
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSS-IEESDECLEFVNLFC 70
K L + L ++ + +R GN + HE + + V+
Sbjct: 152 AKGNNLLKQIDDLVSLGILTPGRASVLHQIRTLGNLSAHEAAPHTPAQLGLAMAVVDHLL 211
Query: 71 DIVFTLPALIKE 82
+ V+ LP +
Sbjct: 212 EEVYILPEKTQR 223
>gi|223934465|ref|ZP_03626386.1| conserved hypothetical protein [bacterium Ellin514]
gi|223896928|gb|EEF63368.1| conserved hypothetical protein [bacterium Ellin514]
Length = 212
Score = 34.2 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE 61
++D R L Q L E I + + VR+ GN+AVH G+ + + E
Sbjct: 123 NINDDIRSLVQKGL-DERIQQSLDIVRVIGNEAVHPGEMDLRDKTE 167
>gi|114776879|ref|ZP_01451922.1| hypothetical protein SPV1_11706 [Mariprofundus ferrooxydans PV-1]
gi|114552965|gb|EAU55396.1| hypothetical protein SPV1_11706 [Mariprofundus ferrooxydans PV-1]
Length = 247
Score = 34.2 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFT 75
+++ + L L +I + + +R+ GN AVH GQ +E+ E + LF + F
Sbjct: 158 NINNDIKALVAEGL-SPKIQQALDLLRVVGNNAVHPGQIDLEDGREIA--LRLFHVLNFI 214
Query: 76 LPALIKEKK 84
+I + K
Sbjct: 215 ADEMISKPK 223
>gi|168232881|ref|ZP_02657939.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194468971|ref|ZP_03074955.1| type I restriction enzyme EcoKI R protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194455335|gb|EDX44174.1| type I restriction enzyme EcoKI R protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|205333006|gb|EDZ19770.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 1169
Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPACENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|161617831|ref|YP_001591796.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|161367195|gb|ABX70963.1| hypothetical protein SPAB_05695 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 1169
Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPACENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|16767770|ref|NP_463385.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16423093|gb|AAL23344.1| endonuclease R [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|312915623|dbj|BAJ39597.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
Length = 1169
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPACENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|167991324|ref|ZP_02572423.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168243976|ref|ZP_02668908.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194449776|ref|YP_002048549.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|197262099|ref|ZP_03162173.1| type I restriction enzyme EcoKI R protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|194408080|gb|ACF68299.1| type I restriction enzyme EcoKI R protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|197240354|gb|EDY22974.1| type I restriction enzyme EcoKI R protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|205330415|gb|EDZ17179.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205336991|gb|EDZ23755.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|261249611|emb|CBG27481.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996884|gb|ACY91769.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301161009|emb|CBW20546.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323132868|gb|ADX20298.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332991335|gb|AEF10318.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 1169
Score = 34.2 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPACENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|126172445|ref|YP_001048594.1| Sel1 domain-containing protein [Shewanella baltica OS155]
gi|125995650|gb|ABN59725.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS155]
Length = 491
Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLE 64
Q + I F L DR L Q +I + + +R +GN+ H + + ++ + L
Sbjct: 55 QDKHIVFSSP-NLYDRIEQLNQQRVIDVKTTRALHRLRADGNRGAHPEKYHLTQA-QLLA 112
Query: 65 FVN 67
V
Sbjct: 113 LVQ 115
>gi|157375342|ref|YP_001473942.1| hypothetical protein Ssed_2205 [Shewanella sediminis HAW-EB3]
gi|157317716|gb|ABV36814.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 219
Score = 34.2 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCD 71
EK +++ R L +N + + + ++ VRI GN AVH G+ S ++ D
Sbjct: 125 EKGDNINEDIRALASNNTLPPLVVKVADTVRITGNNAVHPGEMSDDDFDHIAS------- 177
Query: 72 IVFTLPALIKEKKSTHPNQ 90
+F L I +K T PN+
Sbjct: 178 KMFELLNFIVKKGITEPNE 196
>gi|304412306|ref|ZP_07393914.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS183]
gi|307306090|ref|ZP_07585835.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
BA175]
gi|304349341|gb|EFM13751.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS183]
gi|306910963|gb|EFN41390.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
BA175]
Length = 491
Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Q ++I F L DR L Q +I + + +R EGN+ H + + ++
Sbjct: 55 QDKQIAFSSP-NLYDRIEQLNQQRVIDVKTTRALHRLRAEGNRGAHPEKYHLTQAQ 109
>gi|213648687|ref|ZP_03378740.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
Length = 1032
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|153002642|ref|YP_001368323.1| Sel1 domain-containing protein [Shewanella baltica OS185]
gi|151367260|gb|ABS10260.1| Sel1 domain protein repeat-containing protein [Shewanella baltica
OS185]
Length = 491
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 5 QGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESD 60
Q + I F L DR L Q +I + + +R +GN+ H + + ++
Sbjct: 55 QDKHIVFSSP-NLYDRIEQLNQQRVIDVKTTRALHRLRADGNRGAHPEKYHLTQAQ 109
>gi|295135275|ref|YP_003585951.1| hypothetical protein ZPR_3439 [Zunongwangia profunda SM-A87]
gi|294983290|gb|ADF53755.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
Length = 298
Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEE 58
L++R L ++ + + + +R GN A+HE + EE
Sbjct: 140 NLAERIDGLSKNGHLTTSESKRLHSIRFLGNDALHEMEVPKEE 182
>gi|315181344|gb|ADT88257.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218]
gi|315182792|gb|ADT89705.1| hypothetical protein vfu_B01540 [Vibrio furnissii NCTC 11218]
Length = 107
Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 16 MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFT 75
++D L ++ L ++ I + + VR+ GN AVH G+ S+E+ + + +F
Sbjct: 18 NINDDIAVLVKNGLPVK-IQQALDVVRVVGNNAVHPGEISLEDHPQVVT-------ALFN 69
Query: 76 LPALIKEKKSTHPNQSRD 93
L +I + + T P Q +
Sbjct: 70 LINMIVDNQITQPKQVAE 87
>gi|170718591|ref|YP_001783794.1| exonuclease V subunit alpha [Haemophilus somnus 2336]
gi|168826720|gb|ACA32091.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit-like protein -
helicase superfamily I member [Haemophilus somnus 2336]
Length = 937
Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 9 INFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIE 57
I LSDR R + +EI + + +RI GNKAVH S ++
Sbjct: 54 IELVDNESLSDRMRKADFKTYVPKEIQQKLHLLRIAGNKAVHTSFSHLD 102
>gi|319788902|ref|YP_004090217.1| Type I site-specific deoxyribonuclease [Ruminococcus albus 7]
gi|315450769|gb|ADU24331.1| Type I site-specific deoxyribonuclease [Ruminococcus albus 7]
Length = 1086
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 19 DRTRYLKQHNLIIEE--IFEWSNFVRIEGNKAVHEGQSSIEESDECLE--------FVNL 68
+R + LK+ LI I + +R++ N AVH+ + S++ + L F+ +
Sbjct: 65 NRIKILKREGLIDRGGRIDDILYSLRMKRNDAVHKYEDSVDTAKSLLRMAFRLAVWFMEV 124
Query: 69 FCDIVFTLPALIKEKKSTHPN 89
+ D F P + + P+
Sbjct: 125 YGDYSFKAPDFVMPQNEPIPD 145
>gi|213621071|ref|ZP_03373854.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 110
Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|168821021|ref|ZP_02833021.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205342336|gb|EDZ29100.1| type III restriction enzyme [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320088961|emb|CBY98717.1| type I restriction-modification system, R subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 1169
Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|56416310|ref|YP_153385.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197365233|ref|YP_002144870.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56130567|gb|AAV80073.1| subunit R of type I restriction-modification system [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197096710|emb|CAR62333.1| subunit R of type I restriction-modification system [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
Length = 1169
Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|16763332|ref|NP_458949.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29144810|ref|NP_808152.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213428390|ref|ZP_03361140.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213864870|ref|ZP_03386989.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|25289195|pir||AD1069 type 1 site-specific deoxyribonuclease (EC 3.1.21.3) - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505641|emb|CAD03371.1| subunit R of type I restriction-modification system [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29140449|gb|AAO72012.1| subunit R of type I restriction-modification system [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
Length = 1169
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|289810393|ref|ZP_06541022.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 195
Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|213583087|ref|ZP_03364913.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 409
Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|213419771|ref|ZP_03352837.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 192
Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|213022348|ref|ZP_03336795.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 548
Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|289207690|ref|YP_003459756.1| efflux transporter RND family, MFP subunit [Thioalkalivibrio sp.
K90mix]
gi|288943321|gb|ADC71020.1| efflux transporter, RND family, MFP subunit [Thioalkalivibrio sp.
K90mix]
Length = 349
Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 8 RINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
R F + +R + + ++ FE + + + +EE+ E L +
Sbjct: 102 RARFNEARSEFNRIQDVFDRGVVSRSEFERAEAELQSARARLRSAEGRVEEAREQLGYTE 161
Query: 68 LFCDI 72
+F
Sbjct: 162 VFAPY 166
>gi|298369610|ref|ZP_06980927.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282167|gb|EFI23655.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 220
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSS----IEESDECLEFVN 67
E+ ++ R L + + + ++ +RI GN AVH GQ S + + + + +N
Sbjct: 121 EEGKNINTDIRSLVNKGVFSGRVVQVADTLRITGNNAVHPGQISDADFDKAAAKMFDLIN 180
Query: 68 LFCDIVFTLPALIKEKKSTHPNQSRDG 94
T P + E P +R+
Sbjct: 181 FIVKKAITEPKELDELYQLMPENARNA 207
>gi|289824087|ref|ZP_06543684.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 391
Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 GQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECL 63
GQ ++ C D R L + I + I + +R GN AVHE + ++++ CL
Sbjct: 50 GQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDDAQMCL 107
>gi|46446740|ref|YP_008105.1| isoamylase [Candidatus Protochlamydia amoebophila UWE25]
gi|46400381|emb|CAF23830.1| probable isoamylase [Candidatus Protochlamydia amoebophila UWE25]
Length = 670
Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MKDDQGQRINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEG 45
M D+QG +NF CG + + + II+ + W +R++G
Sbjct: 279 MIDEQGNYLNFSGCGNTFNANHPIVKE-FIIQSLRYWVTEMRVDG 322
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.136 0.363
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,635,596,587
Number of Sequences: 14124377
Number of extensions: 50878499
Number of successful extensions: 125251
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 125107
Number of HSP's gapped (non-prelim): 209
length of query: 94
length of database: 4,842,793,630
effective HSP length: 64
effective length of query: 30
effective length of database: 3,938,833,502
effective search space: 118165005060
effective search space used: 118165005060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 75 (33.5 bits)