RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781182|ref|YP_003065595.1| hypothetical protein
CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>gnl|CDD|183141 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
           Provisional.
          Length = 1123

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 9   INFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEF 65
           I    C    D  R L +   + +EI +  + +R  GNKAVHE      E+   L+ 
Sbjct: 55  IYEPPCENQHDLLRRLGKEGFLPDEILDVFHKLRKIGNKAVHEFHGDHREALMGLKL 111


>gnl|CDD|130502 TIGR01435, glu_cys_lig_rel, glutamate--cysteine
           ligase/gamma-glutamylcysteine synthetase, Streptococcus
           agalactiae type.  gamma-glutamyltripeptides of the form
           gamma-Glu-Cys-X(aa). The N-terminal region is similar to
           proteobacterial glutamate-cysteine ligase. The
           C-terminal region is homologous to cyanophycin
           synthetase of cyanobacteria and, more distantly, to
           D-alanine-D-alanine ligases. Members of this family are
           found in Listeria and Enterococcus, Gram-positive
           lineages in which glutathione is produced (see
           PUBMED:8606174), and in Pasteurella multocida, a
           Proteobacterium. In Clostridium acetobutylicum, adjacent
           genes include separate proteins rather than a fusion
           protein.
          Length = 737

 Score = 24.9 bits (54), Expect = 4.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 16  MLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDE 61
              + T  LK+  L I+ I +    V +  N  V  G  SI+ +DE
Sbjct: 617 TGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDE 662


>gnl|CDD|147830 pfam05892, Tricho_coat, Trichovirus coat protein.  This family
           consists of several coat proteins which are specific to
           the ssRNA positive-strand, no DNA stage viruses such as
           the Trichovirus and Vitivirus.
          Length = 195

 Score = 24.6 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 42  RIEGNKAVHEGQSSIEESDECL 63
           R EG K+V E QSS+ E    +
Sbjct: 174 RTEGAKSVFEAQSSVVEQALEI 195


>gnl|CDD|184121 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
           Provisional.
          Length = 639

 Score = 24.6 bits (54), Expect = 5.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 6/34 (17%)

Query: 19  DRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG 52
           +RTR L +HNL +  IFE  N ++    +A+ EG
Sbjct: 292 ERTRLLAEHNLYV--IFEEINRIK----QAIKEG 319


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,488,321
Number of extensions: 76659
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 10
Length of query: 94
Length of database: 5,994,473
Length adjustment: 62
Effective length of query: 32
Effective length of database: 4,654,777
Effective search space: 148952864
Effective search space used: 148952864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)