RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62] (94 letters) >d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 367 Score = 27.6 bits (61), Expect = 0.28 Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 15 GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67 L + ++ + + + E +W+ V E N AV+ G I+ + +E+ N Sbjct: 76 RRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCN 128 >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Length = 450 Score = 23.2 bits (48), Expect = 6.7 Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 4/32 (12%) Query: 36 EWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67 +AV SS E ++ V+ Sbjct: 418 ALRETAD----RAVGPKGSSTENFITLVDLVS 445 >d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 102 Score = 23.2 bits (50), Expect = 7.0 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%) Query: 41 VRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTLPALIKEKKSTHP 88 + ++A + + IEE E + D L + K HP Sbjct: 30 ANLREHRAFYWWEGKIEEDKEVGAILKTRED---LWEELKERIKELHP 74 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 351,368 Number of extensions: 13893 Number of successful extensions: 37 Number of sequences better than 10.0: 1 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 14 Length of query: 94 Length of database: 2,407,596 Length adjustment: 57 Effective length of query: 37 Effective length of database: 1,624,986 Effective search space: 60124482 Effective search space used: 60124482 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.6 bits)