RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781182|ref|YP_003065595.1| hypothetical protein
CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 367

 Score = 27.6 bits (61), Expect = 0.28
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 15  GMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
             L    + ++ + + + E  +W+  V  E N AV+ G   I+ +   +E+ N
Sbjct: 76  RRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCN 128


>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
           3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
           29760]}
          Length = 450

 Score = 23.2 bits (48), Expect = 6.7
 Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 4/32 (12%)

Query: 36  EWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67
                      +AV    SS E     ++ V+
Sbjct: 418 ALRETAD----RAVGPKGSSTENFITLVDLVS 445


>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 102

 Score = 23.2 bits (50), Expect = 7.0
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 41 VRIEGNKAVHEGQSSIEESDECLEFVNLFCDIVFTLPALIKEKKSTHP 88
            +  ++A +  +  IEE  E    +    D       L +  K  HP
Sbjct: 30 ANLREHRAFYWWEGKIEEDKEVGAILKTRED---LWEELKERIKELHP 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,368
Number of extensions: 13893
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 14
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)