Query         gi|254781183|ref|YP_003065596.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:51:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781183.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3fcs_A Integrin, alpha 2B; be  52.1     2.5 7.5E-05   23.2  -0.7   22   14-35    127-148 (148)
  2 >1lpb_A Colipase; hydrolase(ca  32.7      15 0.00046   18.8   0.8   16   17-32     35-51  (52)
  3 >1tjl_A DNAK suppressor protei  28.1      18 0.00052   18.5   0.5   11   45-55    111-121 (132)
  4 >2kq9_A DNAK suppressor protei  17.0      51  0.0015   15.9   1.0   19   46-64      2-20  (32)
  5 >3k6s_A Integrin alpha-X; hete  14.5      71  0.0021   15.1   1.2   24   11-34     52-75  (170)
  6 >2kgo_A Uncharacterized protei  13.3      77  0.0023   14.9   1.1   22   45-66     56-77  (108)
  7 >1n1f_A Interleukin-19; cytoki  12.2      70  0.0021   15.1   0.6   29   63-94    130-158 (159)
  8 >3fm2_A Uncharacterized protei  11.5      51  0.0015   15.9  -0.3   32   33-65     47-78  (107)
  9 >1twf_B DNA-directed RNA polym  10.9 1.1E+02  0.0034   14.0   1.3   13   43-55      4-16  (70)
 10 >1pp9_D Cytochrome C-1, cytoch  10.8      57  0.0017   15.6  -0.2   15   46-60     35-65  (142)

No 1  
>>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} (A:18-165)
Probab=52.10  E-value=2.5  Score=23.21  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=15.4

Q ss_pred             EHHCCCCCCCCEEECCCCCHHH
Q ss_conf             2013568984202025550221
Q gi|254781183|r   14 RHCSQKNPNYGMCHAGVSKEEK   35 (94)
Q Consensus        14 rhcsqknpnygmchagvskeek   35 (94)
                      ..|.+.+.+||+|.+|.|-+.|
T Consensus       127 ~PC~~~~~~~g~cq~G~Sa~~~  148 (148)
T 3fcs_A          127 SPCRGNTLSRIYVENDFSWDKR  148 (148)
T ss_dssp             CTTCCCCCHHHHHHTTTTTCCT
T ss_pred             EECCCCCCCCCCCCCCCCCCCC
T ss_conf             2025766543224556654543


No 2  
>>1lpb_A Colipase; hydrolase(carboxylic esterase); HET: BOG MUP; 2.46A {Sus scrofa} (A:44-95)
Probab=32.66  E-value=15  Score=18.81  Aligned_cols=16  Identities=50%  Similarity=0.974  Sum_probs=9.5

Q ss_pred             CCCCCCCCEEEC-CCCC
Q ss_conf             356898420202-5550
Q gi|254781183|r   17 SQKNPNYGMCHA-GVSK   32 (94)
Q Consensus        17 sqknpnygmcha-gvsk   32 (94)
                      |-.|.|||.||. |-||
T Consensus        35 sItNtn~GiC~d~~rs~   51 (52)
T 1lpb_A           35 SITNTNFGICHNVGRSD   51 (52)
T ss_dssp             HHHTCCEEEEEEC----
T ss_pred             HHHCCCCEEEECCCCCC
T ss_conf             31213201331035567


No 3  
>>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} (A:1-132)
Probab=28.15  E-value=18  Score=18.50  Aligned_cols=11  Identities=45%  Similarity=0.987  Sum_probs=8.1

Q ss_pred             EEEECCCCCHH
Q ss_conf             55423666402
Q gi|254781183|r   45 VGICENCGDLS   55 (94)
Q Consensus        45 vgicencgdls   55 (94)
                      -|+|+.||+.-
T Consensus       111 YG~C~~Cge~I  121 (132)
T 1tjl_A          111 FGYCESCGVEI  121 (132)
T ss_dssp             CSBCSSSSCBC
T ss_pred             CCEECCCCCCC
T ss_conf             99619878806


No 4  
>>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:81-112)
Probab=17.01  E-value=51  Score=15.92  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=11.4

Q ss_pred             EEECCCCCHHHHHHHHHCC
Q ss_conf             5423666402566765357
Q gi|254781183|r   46 GICENCGDLSLMAFQKWLP   64 (94)
Q Consensus        46 gicencgdlslmafqkwlp   64 (94)
                      |+|++||+---.+--+-+|
T Consensus         2 G~C~~Cg~~I~~~RL~a~P   20 (32)
T 2kq9_A            2 GTCVKCGKRISEDRLKAVP   20 (32)
T ss_dssp             SEETTTTEECCHHHHHHCS
T ss_pred             CCCHHCCCCCCHHHHHCCC
T ss_conf             8402319906899970799


No 5  
>>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:76-124,A:316-436)
Probab=14.48  E-value=71  Score=15.11  Aligned_cols=24  Identities=17%  Similarity=-0.003  Sum_probs=17.6

Q ss_pred             EEEEHHCCCCCCCCEEECCCCCHH
Q ss_conf             011201356898420202555022
Q gi|254781183|r   11 IFCRHCSQKNPNYGMCHAGVSKEE   34 (94)
Q Consensus        11 ifcrhcsqknpnygmchagvskee   34 (94)
                      ..||--+.....||||.+|.|-.-
T Consensus        52 ~~~~~~~~~~~~~g~cQaGfSa~~   75 (170)
T 3k6s_A           52 EGTETTSSSSFELEMAQEGFSAVF   75 (170)
T ss_dssp             CCCSSSSCCCCSSSBCCTTSSEEC
T ss_pred             ECCCCCCCCCEEEEECCCCCCEEE
T ss_conf             043256664404631457762145


No 6  
>>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, metal-binding, zinc, zinc-finger; NMR {Escherichia coli k-12} (A:)
Probab=13.31  E-value=77  Score=14.90  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=15.6

Q ss_pred             EEEECCCCCHHHHHHHHHCCHH
Q ss_conf             5542366640256676535733
Q gi|254781183|r   45 VGICENCGDLSLMAFQKWLPTK   66 (94)
Q Consensus        45 vgicencgdlslmafqkwlptk   66 (94)
                      -|+|+.||+.--.+-.+-+|+-
T Consensus        56 yG~C~~Cg~~I~~~RL~A~P~a   77 (108)
T 2kgo_A           56 LDECEECGAPIPQARREAIPGV   77 (108)
T ss_dssp             CSBCTTTCCBCCHHHHHHSTTC
T ss_pred             CCCHHHCCCCCCHHHHHCCCCC
T ss_conf             8882112993249999607996


No 7  
>>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} (A:)
Probab=12.25  E-value=70  Score=15.15  Aligned_cols=29  Identities=14%  Similarity=0.062  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHCCCCHHHHHCCCHHHHHHHCCC
Q ss_conf             57335567640300134427675664220369
Q gi|254781183|r   63 LPTKDINKAIGESQTKEEYFPSYEEFYLSKAS   94 (94)
Q Consensus        63 lptkdinkaigesqtkeeyfpsyeefylskas   94 (94)
                      -+.+.+.|||||-..   .|..-|+|+-+|++
T Consensus       130 ~~~~g~~KAiGElDi---Ll~~ie~~~~~k~~  158 (159)
T 1n1f_A          130 EVHAAAIKSLGELDV---FLAWINKNHEVMSS  158 (159)
T ss_dssp             CHHHHHHHHHHTHHH---HHHHHHHHSCCBCC
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHCCCCCC
T ss_conf             336688999988999---99999997023357


No 8  
>>3fm2_A Uncharacterized protein, distantly related to A heme binding/degrading HEMS (PF05171)...; YP_324846.1; HET: MSE; 1.80A {Anabaena variabilis atcc 29413} (A:1-37,A:66-135)
Probab=11.50  E-value=51  Score=15.91  Aligned_cols=32  Identities=31%  Similarity=0.539  Sum_probs=25.6

Q ss_pred             HHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCH
Q ss_conf             221257586235554236664025667653573
Q gi|254781183|r   33 EEKAGNMHPTYAVGICENCGDLSLMAFQKWLPT   65 (94)
Q Consensus        33 eekagnmhptyavgicencgdlslmafqkwlpt   65 (94)
                      +.|.||. +|||+-.-..-+...|-+|-.|-..
T Consensus        47 ~AKRGnf-tTYAIRFld~~~~vaLS~fLqWGkp   78 (107)
T 3fm2_A           47 EAKRGNF-TTYAIRFLDEKQESALSLFLQWGKP   78 (107)
T ss_dssp             ECTTTCC-EEEEEEEECTTSCEEEEEEECCSST
T ss_pred             CCCCCCE-EEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             5666880-4899999978998989999553998


No 9  
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224)
Probab=10.88  E-value=1.1e+02  Score=13.97  Aligned_cols=13  Identities=38%  Similarity=0.943  Sum_probs=7.3

Q ss_pred             EEEEEECCCCCHH
Q ss_conf             3555423666402
Q gi|254781183|r   43 YAVGICENCGDLS   55 (94)
Q Consensus        43 yavgicencgdls   55 (94)
                      |.+-+|++||.+.
T Consensus         4 ~~~~VC~~CG~i~   16 (70)
T 1twf_B            4 FRVHICGICGLMT   16 (70)
T ss_dssp             CEEEEESSSCSSC
T ss_pred             CCEEECCCCCCEE
T ss_conf             5054003777468


No 10 
>>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (D:1-40,D:95-196)
Probab=10.83  E-value=57  Score=15.63  Aligned_cols=15  Identities=33%  Similarity=0.771  Sum_probs=11.2

Q ss_pred             EEECCC----------------CCHHHHHHH
Q ss_conf             542366----------------640256676
Q gi|254781183|r   46 GICENC----------------GDLSLMAFQ   60 (94)
Q Consensus        46 gicenc----------------gdlslmafq   60 (94)
                      -+|.+|                -|||||+.-
T Consensus        35 evc~~chs~~~~aaaan~Ga~PPDLSLiaka   65 (142)
T 1pp9_D           35 QVCSSCYPNPEAARAANNGALPPDLSYIVRA   65 (142)
T ss_dssp             HTGGGTSSSHHHHHHHTTTCCCCCCSSTTTS
T ss_pred             HHCHHCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             9653128889999864169876248999870


Done!