Query gi|254781183|ref|YP_003065596.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:51:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781183.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3fcs_A Integrin, alpha 2B; be 52.1 2.5 7.5E-05 23.2 -0.7 22 14-35 127-148 (148) 2 >1lpb_A Colipase; hydrolase(ca 32.7 15 0.00046 18.8 0.8 16 17-32 35-51 (52) 3 >1tjl_A DNAK suppressor protei 28.1 18 0.00052 18.5 0.5 11 45-55 111-121 (132) 4 >2kq9_A DNAK suppressor protei 17.0 51 0.0015 15.9 1.0 19 46-64 2-20 (32) 5 >3k6s_A Integrin alpha-X; hete 14.5 71 0.0021 15.1 1.2 24 11-34 52-75 (170) 6 >2kgo_A Uncharacterized protei 13.3 77 0.0023 14.9 1.1 22 45-66 56-77 (108) 7 >1n1f_A Interleukin-19; cytoki 12.2 70 0.0021 15.1 0.6 29 63-94 130-158 (159) 8 >3fm2_A Uncharacterized protei 11.5 51 0.0015 15.9 -0.3 32 33-65 47-78 (107) 9 >1twf_B DNA-directed RNA polym 10.9 1.1E+02 0.0034 14.0 1.3 13 43-55 4-16 (70) 10 >1pp9_D Cytochrome C-1, cytoch 10.8 57 0.0017 15.6 -0.2 15 46-60 35-65 (142) No 1 >>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} (A:18-165) Probab=52.10 E-value=2.5 Score=23.21 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=15.4 Q ss_pred EHHCCCCCCCCEEECCCCCHHH Q ss_conf 2013568984202025550221 Q gi|254781183|r 14 RHCSQKNPNYGMCHAGVSKEEK 35 (94) Q Consensus 14 rhcsqknpnygmchagvskeek 35 (94) ..|.+.+.+||+|.+|.|-+.| T Consensus 127 ~PC~~~~~~~g~cq~G~Sa~~~ 148 (148) T 3fcs_A 127 SPCRGNTLSRIYVENDFSWDKR 148 (148) T ss_dssp CTTCCCCCHHHHHHTTTTTCCT T ss_pred EECCCCCCCCCCCCCCCCCCCC T ss_conf 2025766543224556654543 No 2 >>1lpb_A Colipase; hydrolase(carboxylic esterase); HET: BOG MUP; 2.46A {Sus scrofa} (A:44-95) Probab=32.66 E-value=15 Score=18.81 Aligned_cols=16 Identities=50% Similarity=0.974 Sum_probs=9.5 Q ss_pred CCCCCCCCEEEC-CCCC Q ss_conf 356898420202-5550 Q gi|254781183|r 17 SQKNPNYGMCHA-GVSK 32 (94) Q Consensus 17 sqknpnygmcha-gvsk 32 (94) |-.|.|||.||. |-|| T Consensus 35 sItNtn~GiC~d~~rs~ 51 (52) T 1lpb_A 35 SITNTNFGICHNVGRSD 51 (52) T ss_dssp HHHTCCEEEEEEC---- T ss_pred HHHCCCCEEEECCCCCC T ss_conf 31213201331035567 No 3 >>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} (A:1-132) Probab=28.15 E-value=18 Score=18.50 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=8.1 Q ss_pred EEEECCCCCHH Q ss_conf 55423666402 Q gi|254781183|r 45 VGICENCGDLS 55 (94) Q Consensus 45 vgicencgdls 55 (94) -|+|+.||+.- T Consensus 111 YG~C~~Cge~I 121 (132) T 1tjl_A 111 FGYCESCGVEI 121 (132) T ss_dssp CSBCSSSSCBC T ss_pred CCEECCCCCCC T ss_conf 99619878806 No 4 >>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:81-112) Probab=17.01 E-value=51 Score=15.92 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=11.4 Q ss_pred EEECCCCCHHHHHHHHHCC Q ss_conf 5423666402566765357 Q gi|254781183|r 46 GICENCGDLSLMAFQKWLP 64 (94) Q Consensus 46 gicencgdlslmafqkwlp 64 (94) |+|++||+---.+--+-+| T Consensus 2 G~C~~Cg~~I~~~RL~a~P 20 (32) T 2kq9_A 2 GTCVKCGKRISEDRLKAVP 20 (32) T ss_dssp SEETTTTEECCHHHHHHCS T ss_pred CCCHHCCCCCCHHHHHCCC T ss_conf 8402319906899970799 No 5 >>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:76-124,A:316-436) Probab=14.48 E-value=71 Score=15.11 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=17.6 Q ss_pred EEEEHHCCCCCCCCEEECCCCCHH Q ss_conf 011201356898420202555022 Q gi|254781183|r 11 IFCRHCSQKNPNYGMCHAGVSKEE 34 (94) Q Consensus 11 ifcrhcsqknpnygmchagvskee 34 (94) ..||--+.....||||.+|.|-.- T Consensus 52 ~~~~~~~~~~~~~g~cQaGfSa~~ 75 (170) T 3k6s_A 52 EGTETTSSSSFELEMAQEGFSAVF 75 (170) T ss_dssp CCCSSSSCCCCSSSBCCTTSSEEC T ss_pred ECCCCCCCCCEEEEECCCCCCEEE T ss_conf 043256664404631457762145 No 6 >>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, metal-binding, zinc, zinc-finger; NMR {Escherichia coli k-12} (A:) Probab=13.31 E-value=77 Score=14.90 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=15.6 Q ss_pred EEEECCCCCHHHHHHHHHCCHH Q ss_conf 5542366640256676535733 Q gi|254781183|r 45 VGICENCGDLSLMAFQKWLPTK 66 (94) Q Consensus 45 vgicencgdlslmafqkwlptk 66 (94) -|+|+.||+.--.+-.+-+|+- T Consensus 56 yG~C~~Cg~~I~~~RL~A~P~a 77 (108) T 2kgo_A 56 LDECEECGAPIPQARREAIPGV 77 (108) T ss_dssp CSBCTTTCCBCCHHHHHHSTTC T ss_pred CCCHHHCCCCCCHHHHHCCCCC T ss_conf 8882112993249999607996 No 7 >>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} (A:) Probab=12.25 E-value=70 Score=15.15 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=21.2 Q ss_pred CCHHHHHHHHCCCCHHHHHCCCHHHHHHHCCC Q ss_conf 57335567640300134427675664220369 Q gi|254781183|r 63 LPTKDINKAIGESQTKEEYFPSYEEFYLSKAS 94 (94) Q Consensus 63 lptkdinkaigesqtkeeyfpsyeefylskas 94 (94) -+.+.+.|||||-.. .|..-|+|+-+|++ T Consensus 130 ~~~~g~~KAiGElDi---Ll~~ie~~~~~k~~ 158 (159) T 1n1f_A 130 EVHAAAIKSLGELDV---FLAWINKNHEVMSS 158 (159) T ss_dssp CHHHHHHHHHHTHHH---HHHHHHHHSCCBCC T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHCCCCCC T ss_conf 336688999988999---99999997023357 No 8 >>3fm2_A Uncharacterized protein, distantly related to A heme binding/degrading HEMS (PF05171)...; YP_324846.1; HET: MSE; 1.80A {Anabaena variabilis atcc 29413} (A:1-37,A:66-135) Probab=11.50 E-value=51 Score=15.91 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=25.6 Q ss_pred HHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCH Q ss_conf 221257586235554236664025667653573 Q gi|254781183|r 33 EEKAGNMHPTYAVGICENCGDLSLMAFQKWLPT 65 (94) Q Consensus 33 eekagnmhptyavgicencgdlslmafqkwlpt 65 (94) +.|.||. +|||+-.-..-+...|-+|-.|-.. T Consensus 47 ~AKRGnf-tTYAIRFld~~~~vaLS~fLqWGkp 78 (107) T 3fm2_A 47 EAKRGNF-TTYAIRFLDEKQESALSLFLQWGKP 78 (107) T ss_dssp ECTTTCC-EEEEEEEECTTSCEEEEEEECCSST T ss_pred CCCCCCE-EEEEEEEECCCCCEEEEEEEECCCC T ss_conf 5666880-4899999978998989999553998 No 9 >>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224) Probab=10.88 E-value=1.1e+02 Score=13.97 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=7.3 Q ss_pred EEEEEECCCCCHH Q ss_conf 3555423666402 Q gi|254781183|r 43 YAVGICENCGDLS 55 (94) Q Consensus 43 yavgicencgdls 55 (94) |.+-+|++||.+. T Consensus 4 ~~~~VC~~CG~i~ 16 (70) T 1twf_B 4 FRVHICGICGLMT 16 (70) T ss_dssp CEEEEESSSCSSC T ss_pred CCEEECCCCCCEE T ss_conf 5054003777468 No 10 >>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (D:1-40,D:95-196) Probab=10.83 E-value=57 Score=15.63 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=11.2 Q ss_pred EEECCC----------------CCHHHHHHH Q ss_conf 542366----------------640256676 Q gi|254781183|r 46 GICENC----------------GDLSLMAFQ 60 (94) Q Consensus 46 gicenc----------------gdlslmafq 60 (94) -+|.+| -|||||+.- T Consensus 35 evc~~chs~~~~aaaan~Ga~PPDLSLiaka 65 (142) T 1pp9_D 35 QVCSSCYPNPEAARAANNGALPPDLSYIVRA 65 (142) T ss_dssp HTGGGTSSSHHHHHHHTTTCCCCCCSSTTTS T ss_pred HHCHHCCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 9653128889999864169876248999870 Done!