Query gi|254781183|ref|YP_003065596.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:40:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781183.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tjl_A DNAK suppressor protein 20.8 21 0.00087 17.2 0.5 21 45-65 111-131 (151)
2 2kq9_A DNAK suppressor protein 18.6 25 0.0011 16.8 0.5 13 41-55 79-91 (112)
3 2i9f_A Nucleocapsid; structure 14.2 42 0.0018 15.5 0.7 16 60-75 51-66 (69)
4 2pv0_B DNA (cytosine-5)-methyl 13.9 36 0.0015 15.9 0.3 17 37-53 62-78 (386)
5 3ndi_A Methyltransferase; S-ad 12.9 39 0.0017 15.7 0.3 43 12-56 14-64 (416)
6 2j9u_B VPS36, vacuolar protein 12.3 58 0.0024 14.8 1.0 26 25-54 24-49 (76)
7 3ga3_A Interferon-induced heli 11.9 63 0.0027 14.5 1.1 14 5-18 7-20 (133)
8 3dlq_I Interleukin-22; cytokin 11.0 74 0.0031 14.2 1.2 20 58-78 123-142 (151)
9 3fyb_A Protein of unknown func 9.8 38 0.0016 15.8 -0.7 8 9-16 39-46 (104)
10 2kdx_A HYPA, hydrogenase/ureas 9.5 73 0.0031 14.2 0.7 37 2-56 65-101 (119)
No 1
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.83 E-value=21 Score=17.25 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=11.3
Q ss_pred EEEECCCCCHHHHHHHHHCCH
Q ss_conf 554236664025667653573
Q gi|254781183|r 45 VGICENCGDLSLMAFQKWLPT 65 (94)
Q Consensus 45 vgicencgdlslmafqkwlpt 65 (94)
-|+|+.||+.--.+=-+-+|+
T Consensus 111 YG~Ce~CGe~I~~~RL~a~P~ 131 (151)
T 1tjl_A 111 FGYCESCGVEIGIRRLEARPT 131 (151)
T ss_dssp CSBCSSSSCBCCHHHHHHCTT
T ss_pred CCEECCCCCCCCHHHHHCCCC
T ss_conf 997397788067999835888
No 2
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str}
Probab=18.56 E-value=25 Score=16.76 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.7
Q ss_pred CCEEEEEECCCCCHH
Q ss_conf 623555423666402
Q gi|254781183|r 41 PTYAVGICENCGDLS 55 (94)
Q Consensus 41 ptyavgicencgdls 55 (94)
.|| |+|+.||+--
T Consensus 79 GtY--G~C~~CGe~I 91 (112)
T 2kq9_A 79 GTF--GTCVKCGKRI 91 (112)
T ss_dssp TCC--SEETTTTEEC
T ss_pred CCC--CCCCCCCCCC
T ss_conf 997--9020019906
No 3
>2i9f_A Nucleocapsid; structure, crystallography, assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=14.22 E-value=42 Score=15.54 Aligned_cols=16 Identities=38% Similarity=0.856 Sum_probs=12.1
Q ss_pred HHHCCHHHHHHHHCCC
Q ss_conf 6535733556764030
Q gi|254781183|r 60 QKWLPTKDINKAIGES 75 (94)
Q Consensus 60 qkwlptkdinkaiges 75 (94)
-.|.|||.|...+..|
T Consensus 51 vswvptkqiqrkvaps 66 (69)
T 2i9f_A 51 VSWVPTKQIQRKVAPS 66 (69)
T ss_dssp EEECCCHHHHHHHC--
T ss_pred EEEEEHHHHHHHCCCC
T ss_conf 9963778966540787
No 4
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=13.91 E-value=36 Score=15.88 Aligned_cols=17 Identities=41% Similarity=0.950 Sum_probs=13.1
Q ss_pred CCCCCCEEEEEECCCCC
Q ss_conf 57586235554236664
Q gi|254781183|r 37 GNMHPTYAVGICENCGD 53 (94)
Q Consensus 37 gnmhptyavgicencgd 53 (94)
...||...+++|.+|-+
T Consensus 62 ~~~HPl~~~~lC~~C~~ 78 (386)
T 2pv0_B 62 HTQHPLFEGGICAPCKD 78 (386)
T ss_dssp CSBCSSBSSBCCHHHHH
T ss_pred CCCCCCEECCCCCCHHH
T ss_conf 45377310334824433
No 5
>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A*
Probab=12.88 E-value=39 Score=15.69 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEHHCCCCCCCCEEE------CC--CCCHHHCCCCCCCEEEEEECCCCCHHH
Q ss_conf 1120135689842020------25--550221257586235554236664025
Q gi|254781183|r 12 FCRHCSQKNPNYGMCH------AG--VSKEEKAGNMHPTYAVGICENCGDLSL 56 (94)
Q Consensus 12 fcrhcsqknpnygmch------ag--vskeekagnmhptyavgicencgdlsl 56 (94)
-||.|+.+- --.-+ ++ .++++......-.-.+.+|.+||-+.+
T Consensus 14 ~C~iCgs~l--~~~l~lg~~P~~~~f~~~~~~~~~~~~~L~l~~C~~Cg~vql 64 (416)
T 3ndi_A 14 ACRVCGGGV--QEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQL 64 (416)
T ss_dssp ECTTTCCEE--EEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEE
T ss_pred CCCCCCCCC--CEEEECCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEE
T ss_conf 990649766--330775899863557892466755645637998899980886
No 6
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=12.31 E-value=58 Score=14.75 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=13.5
Q ss_pred EEECCCCCHHHCCCCCCCEEEEEECCCCCH
Q ss_conf 020255502212575862355542366640
Q gi|254781183|r 25 MCHAGVSKEEKAGNMHPTYAVGICENCGDL 54 (94)
Q Consensus 25 mchagvskeekagnmhptyavgicencgdl 54 (94)
|-+--+.+|-. +|+-|. -+|+|||--
T Consensus 24 M~~Net~~E~~-~n~~p~---p~C~NCGV~ 49 (76)
T 2j9u_B 24 MVSNETQGEFT-KDTLPT---PICINCGVP 49 (76)
T ss_dssp CCEEEESSCCC-TTCSSC---CBCTTTCCB
T ss_pred EEECCCEEEEC-CCCCCC---CCCCCCCCC
T ss_conf 66421000330-468999---964446875
No 7
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=11.86 E-value=63 Score=14.54 Aligned_cols=14 Identities=36% Similarity=0.925 Sum_probs=11.6
Q ss_pred ECCCEEEEEEHHCC
Q ss_conf 13300001120135
Q gi|254781183|r 5 NTSKLSIFCRHCSQ 18 (94)
Q Consensus 5 ntsklsifcrhcsq 18 (94)
+.|...++||.|++
T Consensus 7 ~~s~v~llCrkC~~ 20 (133)
T 3ga3_A 7 NPSLITFLCKNCSV 20 (133)
T ss_dssp CGGGEEEEETTTCC
T ss_pred CCCEEEEECCCCCC
T ss_conf 87657998989896
No 8
>3dlq_I Interleukin-22; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1m4r_A 3g9v_B 1ykb_A* 3dgc_L*
Probab=10.96 E-value=74 Score=14.16 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=14.7
Q ss_pred HHHHHCCHHHHHHHHCCCCHH
Q ss_conf 676535733556764030013
Q gi|254781183|r 58 AFQKWLPTKDINKAIGESQTK 78 (94)
Q Consensus 58 afqkwlptkdinkaigesqtk 78 (94)
+|.| |..+.+.|||||-..-
T Consensus 123 ~~~k-l~e~g~~KAiGElDiL 142 (151)
T 3dlq_I 123 TVKK-LGESGEIKAIGELDLL 142 (151)
T ss_dssp HHHH-HTHHHHHHHHHTHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHH
T ss_conf 9999-8653247878679999
No 9
>3fyb_A Protein of unknown function (DUF1244); hydrocarbon-degrading, structural genomics, PSI-2, protein structure initiative; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=9.76 E-value=38 Score=15.77 Aligned_cols=8 Identities=50% Similarity=1.315 Sum_probs=0.0
Q ss_pred EEEEEEHH
Q ss_conf 00011201
Q gi|254781183|r 9 LSIFCRHC 16 (94)
Q Consensus 9 lsifcrhc 16 (94)
|+-|||.|
T Consensus 39 LaGFCRNC 46 (104)
T 3fyb_A 39 QADFCRNC 46 (104)
T ss_dssp HHSCCHHH
T ss_pred HHHHHHHH
T ss_conf 98787988
No 10
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=9.50 E-value=73 Score=14.20 Aligned_cols=37 Identities=24% Similarity=0.525 Sum_probs=0.0
Q ss_pred EEEECCCEEEEEEHHCCCCCCCCEEECCCCCHHHCCCCCCCEEEEEECCCCCHHH
Q ss_conf 2541330000112013568984202025550221257586235554236664025
Q gi|254781183|r 2 LIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSL 56 (94)
Q Consensus 2 liwntsklsifcrhcsqknpnygmchagvskeekagnmhptyavgicencgdlsl 56 (94)
|.++.-.....|++|.+.-+--. +....|..||...+
T Consensus 65 L~I~~~p~~~~C~~Cg~~~~~~~------------------~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFKPNA------------------LDYGVCEKCHSKNV 101 (119)
T ss_dssp EEEEEECCEEECSSSSCEECSCC------------------STTCCCSSSSSCCC
T ss_pred EEEEECCCEEECCCCCCEECCCC------------------CCCCCCCCCCCCCC
T ss_conf 99996286789878998833477------------------54772909789997
Done!