BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781183|ref|YP_003065596.1| hypothetical protein
CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781183|ref|YP_003065596.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040860|gb|ACT57656.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 94

 Score =  206 bits (525), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQ 60
          MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQ
Sbjct: 1  MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQ 60

Query: 61 KWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS 94
          KWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS
Sbjct: 61 KWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS 94


>gi|315122553|ref|YP_004063042.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495955|gb|ADR52554.1| hypothetical protein CKC_04025 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 246

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query: 1  MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQ 60
          MLIW +S   I+  HC ++ P+Y M + GV+K  K  +    YAVG C +CG+LSL  F+
Sbjct: 1  MLIWESSDSDIWYGHCYEQKPSYDMSYVGVAKYIKDDDDLSAYAVGACRSCGNLSLFLFK 60

Query: 61 KWL 63
          + L
Sbjct: 61 EML 63


>gi|34499283|ref|NP_903498.1| type 4 fimbrial biogenesis protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105134|gb|AAQ61490.1| type 4 fimbrial biogenesis protein [Chromobacterium violaceum ATCC
           12472]
          Length = 568

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 12  FCRHCSQ--KNPNYGMCHAGVSKEEKAGNMHPTYAVGICENC 51
            C HC Q  + P   +  AG +KE+ AG  HP   VG CE C
Sbjct: 458 LCSHCKQPVEIPKEALLRAGFTKEDLAGGWHPYGPVG-CEEC 498


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.317    0.131    0.419 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 912,990,645
Number of Sequences: 14124377
Number of extensions: 31422747
Number of successful extensions: 59204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59202
Number of HSP's gapped (non-prelim): 3
length of query: 94
length of database: 4,842,793,630
effective HSP length: 64
effective length of query: 30
effective length of database: 3,938,833,502
effective search space: 118165005060
effective search space used: 118165005060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)