RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781183|ref|YP_003065596.1| hypothetical protein
CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>gnl|CDD|29466 cd02770, MopB_DmsA-EC, This CD (MopB_DmsA-EC) includes the DmsA
           enzyme of the dmsABC operon encoding the anaerobic
           dimethylsulfoxide reductase (DMSOR) of Escherichia coli
           and other related DMSOR-like enzymes. Unlike other
           DMSOR-like enzymes, this group has a  predicted
           N-terminal iron-sulfur [4Fe-4S] cluster  binding site.
           These members belong to the molybdopterin_binding (MopB)
           superfamily of proteins..
          Length = 617

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 68  INKAIGESQTKEEYFPSYEEF 88
           + +  G+++ KE   P+YEEF
Sbjct: 528 LEELYGQTRAKEPGLPTYEEF 548


>gnl|CDD|147175 pfam04875, DUF645, Protein of unknown function, DUF645.  This
          family includes several uncharacterized proteins from
          Vibrio cholerae.
          Length = 59

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 50 NCGDLSLMAFQKWLPT 65
          N G L+L  F+ W PT
Sbjct: 29 NRGQLNLDRFEFWQPT 44


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.131    0.419 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,161,819
Number of extensions: 48615
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 6,263,737
Length adjustment: 62
Effective length of query: 32
Effective length of database: 4,923,979
Effective search space: 157567328
Effective search space used: 157567328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)