RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781183|ref|YP_003065596.1| hypothetical protein
CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>gnl|CDD|184743 PRK14559, PRK14559, putative protein serine/threonine
          phosphatase; Provisional.
          Length = 645

 Score = 29.3 bits (66), Expect = 0.21
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 25/103 (24%)

Query: 1  MLIWNTSKLSIFCRHCSQKNPN-YGMC-HAGVSKEEKA----GNMHPTYAVGICENCGDL 54
          MLI         C  C  +NPN    C   G S   K     G   P      C NCG  
Sbjct: 1  MLI---------CPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVP-VDEAHCPNCGAE 50

Query: 55 SLMAFQ----KWLPTKDINKAIGESQTKEEYF-----PSYEEF 88
          +   +     +  P  ++ ++   +Q  E        P Y  +
Sbjct: 51 TGTIWWAIIAQASPNSEVLESGEATQQSESSLTPSSSPLYGSY 93


>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1307

 Score = 28.6 bits (64), Expect = 0.37
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 38   NMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIG 73
            N   T+++G+C  C    LMA   W+P   +   +G
Sbjct: 1123 NRPDTFSLGVCNGC---QLMALLGWVPGPQVGGGLG 1155


>gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8.
          This domain incorporates the interacting site for the
          U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of
          the spliceosome, and is the prime candidate for the
          role of cofactor for the spliceosome's RNA core. The
          essential spliceosomal protein Prp8 interacts with U5
          and U6 snRNAs and with specific pre-mRNA sequences that
          participate in catalysis. This close association with
          crucial RNA sequences, together with extensive genetic
          evidence, suggests that Prp8 could directly affect the
          function of the catalytic core, perhaps acting as a
          splicing cofactor.
          Length = 160

 Score = 25.1 bits (55), Expect = 4.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 66 KDINKAIG-------ESQTKEEYFPSYEEFYLSKAS 94
           D+ +A+G        +  K   FPS+E  +  KAS
Sbjct: 31 TDVIQALGGVETILEHTLFKATGFPSWEGLFWEKAS 66


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.131    0.419 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,434,271
Number of extensions: 69543
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 9
Length of query: 94
Length of database: 5,994,473
Length adjustment: 62
Effective length of query: 32
Effective length of database: 4,654,777
Effective search space: 148952864
Effective search space used: 148952864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)