Query         gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 30 05:42:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781184.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG3828 consensus               27.9      31  0.0008   16.6   1.4   27    4-32    152-178 (457)
  2 smart00186 FBG Fibrinogen-rela  26.4      31 0.00079   16.6   1.1   12   56-67     40-51  (212)
  3 pfam00147 Fibrinogen_C Fibrino  24.5      35  0.0009   16.3   1.1   11   57-67     41-51  (221)
  4 cd00087 FReD Fibrinogen-relate  23.1      39 0.00099   16.1   1.1   12   56-67     41-52  (215)
  5 COG5341 Uncharacterized protei  21.3      74  0.0019   14.6   2.4   50    6-58     17-67  (132)
  6 KOG2869 consensus               18.0      67  0.0017   14.8   1.5   22   34-55     80-101 (379)
  7 KOG2579 consensus               16.4      67  0.0017   14.8   1.1   11   57-67    160-170 (338)
  8 TIGR02468 sucrsPsyn_pln sucros  16.3      38 0.00098   16.1  -0.1   22   53-74    406-427 (1072)
  9 PRK06934 flavodoxin; Provision  15.8      39   0.001   16.1  -0.2   15   12-26    135-149 (221)
 10 COG2983 Uncharacterized conser  12.6      96  0.0024   13.9   1.1   23   33-55    124-146 (153)

No 1  
>KOG3828 consensus
Probab=27.94  E-value=31  Score=16.60  Aligned_cols=27  Identities=37%  Similarity=0.755  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
Q ss_conf             57888999999899998789987622236
Q gi|254781184|r    4 AINHLFINIFYPILWYTFPLMILISIQIS   32 (78)
Q Consensus         4 ainhlfinifypilwytfplmilisiqis   32 (78)
                      -+|+||  .+||..||-+|+..-..+--+
T Consensus       152 ~l~llF--l~ypv~~yl~~~~f~~d~f~~  178 (457)
T KOG3828         152 RLNLLF--LSYPVGWYLPPILFYADIFRS  178 (457)
T ss_pred             HHHHHH--HCCCHHHHHHHHHHHHHHHHH
T ss_conf             999987--236158888888876659999


No 2  
>smart00186 FBG Fibrinogen-related domains (FReDs). Domain present at the C-termini of fibrinogen beta and gamma chains, and a variety of fibrinogen-related proteins, including tenascin and  Drosophila scabrous.
Probab=26.37  E-value=31  Score=16.63  Aligned_cols=12  Identities=42%  Similarity=0.811  Sum_probs=9.3

Q ss_pred             EEEEEEEEEECH
Q ss_conf             213433653000
Q gi|254781184|r   56 ERKWIVFQRRAE   67 (78)
Q Consensus        56 erkwivfqrrae   67 (78)
                      ..-|+|+|||-.
T Consensus        40 gGGWtViQrR~d   51 (212)
T smart00186       40 GGGWTVIQRRMD   51 (212)
T ss_pred             CCCEEEEEEECC
T ss_conf             997699998317


No 3  
>pfam00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain.
Probab=24.55  E-value=35  Score=16.34  Aligned_cols=11  Identities=55%  Similarity=1.105  Sum_probs=9.1

Q ss_pred             EEEEEEEEECH
Q ss_conf             13433653000
Q gi|254781184|r   57 RKWIVFQRRAE   67 (78)
Q Consensus        57 rkwivfqrrae   67 (78)
                      .-|+|+|||..
T Consensus        41 GGWtVIQrR~d   51 (221)
T pfam00147        41 GGWTVFQRRQD   51 (221)
T ss_pred             CCEEEEEEECC
T ss_conf             97599998327


No 4  
>cd00087 FReD Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular arrangement called the disulfide knot. The C termini of fibrinogen chains end in globular domains, which are not completely equivalent. C terminal globular domains of the gamma chains (C-gamma) dimerize and bind to the GPR motif of the N-terminal domain of the alpha chain, while the GHR motif of N-terminal domain of the beta chain binds to the C terminal globular domains of another beta chain (C-beta), which leads to lattice formation.
Probab=23.13  E-value=39  Score=16.10  Aligned_cols=12  Identities=42%  Similarity=0.844  Sum_probs=9.5

Q ss_pred             EEEEEEEEEECH
Q ss_conf             213433653000
Q gi|254781184|r   56 ERKWIVFQRRAE   67 (78)
Q Consensus        56 erkwivfqrrae   67 (78)
                      ..-|+|+|||-.
T Consensus        41 ggGWtViQrR~d   52 (215)
T cd00087          41 GGGWTVIQRRGD   52 (215)
T ss_pred             CCCEEEEEEECC
T ss_conf             997599998317


No 5  
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32  E-value=74  Score=14.55  Aligned_cols=50  Identities=28%  Similarity=0.450  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCCCHH-HHHHHEEEE
Q ss_conf             88899999989999878998762223689997325642184201-211101213
Q gi|254781184|r    6 NHLFINIFYPILWYTFPLMILISIQISIMISIRGRIIRENPIVK-KTAYFVERK   58 (78)
Q Consensus         6 nhlfinifypilwytfplmilisiqisimisirgriirenpivk-ktayfverk   58 (78)
                      --|+|-.|-||+...+.---   --.---||+.|+.+|+-|.-| ...|+++.+
T Consensus        17 v~LiI~sf~~i~~f~~a~~~---kG~~A~i~v~Gk~~r~i~l~Kg~~t~~v~~~   67 (132)
T COG5341          17 VMLIILSFLPILLFSLAKAK---KGAVAEISVDGKVIRTIPLTKGNETFDVKEN   67 (132)
T ss_pred             HHHHHHHHHHHHHHEEEECC---CCCEEEEEECCEEEEEEECCCCCCCEEEECC
T ss_conf             48999999999852144025---7827999987789999983558734899748


No 6  
>KOG2869 consensus
Probab=18.00  E-value=67  Score=14.79  Aligned_cols=22  Identities=41%  Similarity=0.685  Sum_probs=18.7

Q ss_pred             EEEEEEEEEECCCCHHHHHHHE
Q ss_conf             9997325642184201211101
Q gi|254781184|r   34 MISIRGRIIRENPIVKKTAYFV   55 (78)
Q Consensus        34 misirgriirenpivkktayfv   55 (78)
                      .+-++||-|-||+.||-.||..
T Consensus        80 ~L~~KGrti~eNe~Vk~GaYHT  101 (379)
T KOG2869          80 VLRLKGRTIEENEYVKMGAYHT  101 (379)
T ss_pred             EEEEEEEEEEECCCCCCCCEEE
T ss_conf             8999400212434110244057


No 7  
>KOG2579 consensus
Probab=16.38  E-value=67  Score=14.80  Aligned_cols=11  Identities=45%  Similarity=0.930  Sum_probs=8.3

Q ss_pred             EEEEEEEEECH
Q ss_conf             13433653000
Q gi|254781184|r   57 RKWIVFQRRAE   67 (78)
Q Consensus        57 rkwivfqrrae   67 (78)
                      -.|.|||||-.
T Consensus       160 GGWTviQrR~d  170 (338)
T KOG2579         160 GGWTVIQRRED  170 (338)
T ss_pred             CCEEEEEEECC
T ss_conf             98899997027


No 8  
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase; InterPro: IPR012819   Sucrose occupies a central position in the metabolic pathways of all plants and plays a variety of roles including transport sugar, storage reserve, compatible solute, and signal compound . This compound is produced by the combined action of two enzymes, sucrose-phosphate synthase (2.4.1.14 from EC) and sucrose-phosphate phosphatase (3.1.3.24 from EC), via the intermediate sucrose 6-phosphate. Several studies have shown a positive correlation between sucrose-phosphate synthase activity and plant growth rate and yield in agronomically important plants, though direct proof of a causal link is lacking.   This entry represents sucrose-phosphate synthase from plants, which is known to exist in multigene families in several species of both monocots and dicots. The enzyme contains an N-terminal domain glucosyltransferase domain, a variable linker region, and a C-terminal domain similar to that of sucrose-phosphate phosphatase, the next and final enzyme of sucrose biosynthesis. The C-terminal domain is likely to serve a binding - not a catalytic - function, as sucrose-phosphate phosphatase is always encoded by a distinct protein. ; GO: 0046524 sucrose-phosphate synthase activity, 0005985 sucrose metabolic process.
Probab=16.29  E-value=38  Score=16.13  Aligned_cols=22  Identities=41%  Similarity=0.739  Sum_probs=17.9

Q ss_pred             HHEEEEEEEEEEECHHHHHHHH
Q ss_conf             1012134336530000232230
Q gi|254781184|r   53 YFVERKWIVFQRRAENCYARFI   74 (78)
Q Consensus        53 yfverkwivfqrraencyarfi   74 (78)
                      -.+|||-=+=+||.-|||.||.
T Consensus       406 ~~LerkLRaR~rRgVsC~GRfM  427 (1072)
T TIGR02468       406 VVLERKLRARARRGVSCYGRFM  427 (1072)
T ss_pred             CEEEHHHHHCCCCCCCCCCCCC
T ss_conf             0110102211126864246527


No 9  
>PRK06934 flavodoxin; Provisional
Probab=15.77  E-value=39  Score=16.08  Aligned_cols=15  Identities=47%  Similarity=1.236  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999899998789987
Q gi|254781184|r   12 IFYPILWYTFPLMIL   26 (78)
Q Consensus        12 ifypilwytfplmil   26 (78)
                      +=||+-|+++|..+.
T Consensus       135 lGyPiWw~t~p~~v~  149 (221)
T PRK06934        135 IGYPIWWYKMPMVMY  149 (221)
T ss_pred             ECCCHHHCCCCHHHH
T ss_conf             877556413768999


No 10 
>COG2983 Uncharacterized conserved protein [Function unknown]
Probab=12.59  E-value=96  Score=13.95  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=15.3

Q ss_pred             EEEEEEEEEEECCCCHHHHHHHE
Q ss_conf             89997325642184201211101
Q gi|254781184|r   33 IMISIRGRIIRENPIVKKTAYFV   55 (78)
Q Consensus        33 imisirgriirenpivkktayfv   55 (78)
                      --||+|||.+.|.....--.|.|
T Consensus       124 a~isvrg~~v~e~~v~D~~d~iv  146 (153)
T COG2983         124 AGISVRGRTVSESEVIDWEDHIV  146 (153)
T ss_pred             CCCEEECCEECCCCHHHHHHHHC
T ss_conf             58103132322243304999861


Done!