Query         gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:41:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781184.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1jc9a_ d.171.1.1 (A:) Tachyle  19.3      19  0.0014   15.3   1.2   10   57-66     43-52  (220)
  2 d1re3b1 d.171.1.1 (B:200-458)   17.4      23  0.0016   14.9   1.2   12   56-67     47-58  (259)
  3 d1lwuc1 d.171.1.1 (C:138-399)   15.3      27   0.002   14.4   1.2   11   57-67     52-62  (262)
  4 d1fida_ d.171.1.1 (A:) Fibrino  14.3      30  0.0022   14.2   1.2   11   57-67     46-56  (259)
  5 d1lwub1 d.171.1.1 (B:219-477)   11.8      40  0.0029   13.6   1.2   11   57-67     50-60  (259)
  6 d2lisa_ a.19.1.1 (A:) Lysin {R  11.3      17  0.0012   15.6  -0.8   16   43-58     38-53  (131)
  7 d2cu8a1 g.39.1.3 (A:8-37) Cyst   8.4      36  0.0026   13.8   0.0   14   46-59      6-19  (30)
  8 d1evsa_ a.26.1.1 (A:) Oncostat   6.8      26  0.0019   14.6  -1.4   16   60-75    155-175 (184)
  9 d2vgna1 b.38.4.1 (A:1-135) Dom   6.6      77  0.0056   12.0   1.6   21   34-54     80-105 (135)
 10 d3lyna_ a.19.1.1 (A:) Lysin {G   6.3      38  0.0028   13.6  -0.7   13   45-57     33-45  (122)

No 1  
>d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=19.31  E-value=19  Score=15.29  Aligned_cols=10  Identities=50%  Similarity=0.950  Sum_probs=8.8

Q ss_pred             EEEEEEEEEC
Q ss_conf             1343365300
Q gi|254781184|r   57 RKWIVFQRRA   66 (78)
Q Consensus        57 rkwivfqrra   66 (78)
                      .-|+|+|||.
T Consensus        43 gGWtVIQrR~   52 (220)
T d1jc9a_          43 GGWTVIQRRG   52 (220)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEEEC
T ss_conf             9768999843


No 2  
>d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]}
Probab=17.36  E-value=23  Score=14.90  Aligned_cols=12  Identities=33%  Similarity=0.750  Sum_probs=9.4

Q ss_pred             EEEEEEEEEECH
Q ss_conf             213433653000
Q gi|254781184|r   56 ERKWIVFQRRAE   67 (78)
Q Consensus        56 erkwivfqrrae   67 (78)
                      ..-|+|+|||-.
T Consensus        47 gGGWTVIQrR~d   58 (259)
T d1re3b1          47 NGGWTVIQNRQD   58 (259)
T ss_dssp             TSCEEEEEEESS
T ss_pred             CCCEEEEEEECC
T ss_conf             997689998517


No 3  
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Probab=15.32  E-value=27  Score=14.45  Aligned_cols=11  Identities=36%  Similarity=0.821  Sum_probs=8.6

Q ss_pred             EEEEEEEEECH
Q ss_conf             13433653000
Q gi|254781184|r   57 RKWIVFQRRAE   67 (78)
Q Consensus        57 rkwivfqrrae   67 (78)
                      .-|.|+|||..
T Consensus        52 gGWTVIQrR~d   62 (262)
T d1lwuc1          52 NGWTVIQHRHD   62 (262)
T ss_dssp             CEEEEEEEESS
T ss_pred             CCCEEEEECCC
T ss_conf             96058987158


No 4  
>d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]}
Probab=14.35  E-value=30  Score=14.22  Aligned_cols=11  Identities=45%  Similarity=1.054  Sum_probs=8.9

Q ss_pred             EEEEEEEEECH
Q ss_conf             13433653000
Q gi|254781184|r   57 RKWIVFQRRAE   67 (78)
Q Consensus        57 rkwivfqrrae   67 (78)
                      .-|+|+|||..
T Consensus        46 GGWTVIQrR~d   56 (259)
T d1fida_          46 NGWTVFQKRLD   56 (259)
T ss_dssp             CEEEEEEEESS
T ss_pred             CCEEEEEECCC
T ss_conf             87389998868


No 5  
>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]}
Probab=11.81  E-value=40  Score=13.56  Aligned_cols=11  Identities=36%  Similarity=0.773  Sum_probs=8.9

Q ss_pred             EEEEEEEEECH
Q ss_conf             13433653000
Q gi|254781184|r   57 RKWIVFQRRAE   67 (78)
Q Consensus        57 rkwivfqrrae   67 (78)
                      .-|.|+|||-.
T Consensus        50 GGWTVIQrR~d   60 (259)
T d1lwub1          50 GGWTVVQNRVD   60 (259)
T ss_dssp             SCEEEEEEESS
T ss_pred             CCCEEEEECCC
T ss_conf             86014674356


No 6  
>d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens) [TaxId: 6454]}
Probab=11.35  E-value=17  Score=15.60  Aligned_cols=16  Identities=38%  Similarity=0.665  Sum_probs=13.0

Q ss_pred             ECCCCHHHHHHHEEEE
Q ss_conf             2184201211101213
Q gi|254781184|r   43 RENPIVKKTAYFVERK   58 (78)
Q Consensus        43 renpivkktayfverk   58 (78)
                      +-.|+-|||-|||.|.
T Consensus        38 ~ls~~qrk~lyFvNRr   53 (131)
T d2lisa_          38 TLSTVQKKALYFVNRR   53 (131)
T ss_dssp             GSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             6438999879998689


No 7  
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.44  E-value=36  Score=13.76  Aligned_cols=14  Identities=43%  Similarity=0.667  Sum_probs=10.4

Q ss_pred             CCHHHHHHHEEEEE
Q ss_conf             42012111012134
Q gi|254781184|r   46 PIVKKTAYFVERKW   59 (78)
Q Consensus        46 pivkktayfverkw   59 (78)
                      |--.|+.||.|+.-
T Consensus         6 prC~K~VYfaEk~~   19 (30)
T d2cu8a1           6 PKCDKTVYFAEKVS   19 (30)
T ss_dssp             TTTCCBCCTTTEEE
T ss_pred             CCCCCCEEEHHHHC
T ss_conf             78888154377630


No 8  
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.82  E-value=26  Score=14.58  Aligned_cols=16  Identities=50%  Similarity=0.989  Sum_probs=12.7

Q ss_pred             EEEEEECHHH-----HHHHHC
Q ss_conf             3365300002-----322300
Q gi|254781184|r   60 IVFQRRAENC-----YARFIG   75 (78)
Q Consensus        60 ivfqrraenc-----yarfig   75 (78)
                      -+||++-|+|     |.||.|
T Consensus       155 d~Fq~Kl~~C~FL~GyHrfM~  175 (184)
T d1evsa_         155 DAFQRKLEGCRFLHGYHRFMH  175 (184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHH
T ss_conf             899988445604788999999


No 9  
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=6.57  E-value=77  Score=11.96  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=15.7

Q ss_pred             EEEEEEEEEEC-----CCCHHHHHHH
Q ss_conf             99973256421-----8420121110
Q gi|254781184|r   34 MISIRGRIIRE-----NPIVKKTAYF   54 (78)
Q Consensus        34 misirgriire-----npivkktayf   54 (78)
                      .+.|+|+++.|     |+-|+.-+|.
T Consensus        80 ~LRi~G~iv~e~~~~~n~~v~~Gs~H  105 (135)
T d2vgna1          80 YLKYKGVTVTDESGASNVDIPVGKYL  105 (135)
T ss_dssp             EEEEEEEECCCTTSSSSTTCCTTCEE
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCE
T ss_conf             78985369845655556536664757


No 10 
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens) [TaxId: 6456]}
Probab=6.25  E-value=38  Score=13.64  Aligned_cols=13  Identities=46%  Similarity=0.618  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHEEE
Q ss_conf             8420121110121
Q gi|254781184|r   45 NPIVKKTAYFVER   57 (78)
Q Consensus        45 npivkktayfver   57 (78)
                      .++-|||-|||.|
T Consensus        33 s~~qkk~lyFvNR   45 (122)
T d3lyna_          33 TNNQKKTLFFVNR   45 (122)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             5356567888858


Done!