Query gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:41:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781184.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1jc9a_ d.171.1.1 (A:) Tachyle 19.3 19 0.0014 15.3 1.2 10 57-66 43-52 (220) 2 d1re3b1 d.171.1.1 (B:200-458) 17.4 23 0.0016 14.9 1.2 12 56-67 47-58 (259) 3 d1lwuc1 d.171.1.1 (C:138-399) 15.3 27 0.002 14.4 1.2 11 57-67 52-62 (262) 4 d1fida_ d.171.1.1 (A:) Fibrino 14.3 30 0.0022 14.2 1.2 11 57-67 46-56 (259) 5 d1lwub1 d.171.1.1 (B:219-477) 11.8 40 0.0029 13.6 1.2 11 57-67 50-60 (259) 6 d2lisa_ a.19.1.1 (A:) Lysin {R 11.3 17 0.0012 15.6 -0.8 16 43-58 38-53 (131) 7 d2cu8a1 g.39.1.3 (A:8-37) Cyst 8.4 36 0.0026 13.8 0.0 14 46-59 6-19 (30) 8 d1evsa_ a.26.1.1 (A:) Oncostat 6.8 26 0.0019 14.6 -1.4 16 60-75 155-175 (184) 9 d2vgna1 b.38.4.1 (A:1-135) Dom 6.6 77 0.0056 12.0 1.6 21 34-54 80-105 (135) 10 d3lyna_ a.19.1.1 (A:) Lysin {G 6.3 38 0.0028 13.6 -0.7 13 45-57 33-45 (122) No 1 >d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Probab=19.31 E-value=19 Score=15.29 Aligned_cols=10 Identities=50% Similarity=0.950 Sum_probs=8.8 Q ss_pred EEEEEEEEEC Q ss_conf 1343365300 Q gi|254781184|r 57 RKWIVFQRRA 66 (78) Q Consensus 57 rkwivfqrra 66 (78) .-|+|+|||. T Consensus 43 gGWtVIQrR~ 52 (220) T d1jc9a_ 43 GGWTVIQRRG 52 (220) T ss_dssp SCEEEEEEEC T ss_pred CCEEEEEEEC T ss_conf 9768999843 No 2 >d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]} Probab=17.36 E-value=23 Score=14.90 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=9.4 Q ss_pred EEEEEEEEEECH Q ss_conf 213433653000 Q gi|254781184|r 56 ERKWIVFQRRAE 67 (78) Q Consensus 56 erkwivfqrrae 67 (78) ..-|+|+|||-. T Consensus 47 gGGWTVIQrR~d 58 (259) T d1re3b1 47 NGGWTVIQNRQD 58 (259) T ss_dssp TSCEEEEEEESS T ss_pred CCCEEEEEEECC T ss_conf 997689998517 No 3 >d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]} Probab=15.32 E-value=27 Score=14.45 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=8.6 Q ss_pred EEEEEEEEECH Q ss_conf 13433653000 Q gi|254781184|r 57 RKWIVFQRRAE 67 (78) Q Consensus 57 rkwivfqrrae 67 (78) .-|.|+|||.. T Consensus 52 gGWTVIQrR~d 62 (262) T d1lwuc1 52 NGWTVIQHRHD 62 (262) T ss_dssp CEEEEEEEESS T ss_pred CCCEEEEECCC T ss_conf 96058987158 No 4 >d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]} Probab=14.35 E-value=30 Score=14.22 Aligned_cols=11 Identities=45% Similarity=1.054 Sum_probs=8.9 Q ss_pred EEEEEEEEECH Q ss_conf 13433653000 Q gi|254781184|r 57 RKWIVFQRRAE 67 (78) Q Consensus 57 rkwivfqrrae 67 (78) .-|+|+|||.. T Consensus 46 GGWTVIQrR~d 56 (259) T d1fida_ 46 NGWTVFQKRLD 56 (259) T ss_dssp CEEEEEEEESS T ss_pred CCEEEEEECCC T ss_conf 87389998868 No 5 >d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]} Probab=11.81 E-value=40 Score=13.56 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=8.9 Q ss_pred EEEEEEEEECH Q ss_conf 13433653000 Q gi|254781184|r 57 RKWIVFQRRAE 67 (78) Q Consensus 57 rkwivfqrrae 67 (78) .-|.|+|||-. T Consensus 50 GGWTVIQrR~d 60 (259) T d1lwub1 50 GGWTVVQNRVD 60 (259) T ss_dssp SCEEEEEEESS T ss_pred CCCEEEEECCC T ss_conf 86014674356 No 6 >d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens) [TaxId: 6454]} Probab=11.35 E-value=17 Score=15.60 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.0 Q ss_pred ECCCCHHHHHHHEEEE Q ss_conf 2184201211101213 Q gi|254781184|r 43 RENPIVKKTAYFVERK 58 (78) Q Consensus 43 renpivkktayfverk 58 (78) +-.|+-|||-|||.|. T Consensus 38 ~ls~~qrk~lyFvNRr 53 (131) T d2lisa_ 38 TLSTVQKKALYFVNRR 53 (131) T ss_dssp GSCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH T ss_conf 6438999879998689 No 7 >d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]} Probab=8.44 E-value=36 Score=13.76 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=10.4 Q ss_pred CCHHHHHHHEEEEE Q ss_conf 42012111012134 Q gi|254781184|r 46 PIVKKTAYFVERKW 59 (78) Q Consensus 46 pivkktayfverkw 59 (78) |--.|+.||.|+.- T Consensus 6 prC~K~VYfaEk~~ 19 (30) T d2cu8a1 6 PKCDKTVYFAEKVS 19 (30) T ss_dssp TTTCCBCCTTTEEE T ss_pred CCCCCCEEEHHHHC T ss_conf 78888154377630 No 8 >d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]} Probab=6.82 E-value=26 Score=14.58 Aligned_cols=16 Identities=50% Similarity=0.989 Sum_probs=12.7 Q ss_pred EEEEEECHHH-----HHHHHC Q ss_conf 3365300002-----322300 Q gi|254781184|r 60 IVFQRRAENC-----YARFIG 75 (78) Q Consensus 60 ivfqrraenc-----yarfig 75 (78) -+||++-|+| |.||.| T Consensus 155 d~Fq~Kl~~C~FL~GyHrfM~ 175 (184) T d1evsa_ 155 DAFQRKLEGCRFLHGYHRFMH 175 (184) T ss_dssp CHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHH T ss_conf 899988445604788999999 No 9 >d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=6.57 E-value=77 Score=11.96 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.7 Q ss_pred EEEEEEEEEEC-----CCCHHHHHHH Q ss_conf 99973256421-----8420121110 Q gi|254781184|r 34 MISIRGRIIRE-----NPIVKKTAYF 54 (78) Q Consensus 34 misirgriire-----npivkktayf 54 (78) .+.|+|+++.| |+-|+.-+|. T Consensus 80 ~LRi~G~iv~e~~~~~n~~v~~Gs~H 105 (135) T d2vgna1 80 YLKYKGVTVTDESGASNVDIPVGKYL 105 (135) T ss_dssp EEEEEEEECCCTTSSSSTTCCTTCEE T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCE T ss_conf 78985369845655556536664757 No 10 >d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens) [TaxId: 6456]} Probab=6.25 E-value=38 Score=13.64 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=0.0 Q ss_pred CCCHHHHHHHEEE Q ss_conf 8420121110121 Q gi|254781184|r 45 NPIVKKTAYFVER 57 (78) Q Consensus 45 npivkktayfver 57 (78) .++-|||-|||.| T Consensus 33 s~~qkk~lyFvNR 45 (122) T d3lyna_ 33 TNNQKKTLFFVNR 45 (122) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 5356567888858 Done!