RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781184|ref|YP_003065597.1| hypothetical protein
CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>gnl|CDD|39032 KOG3828, KOG3828, KOG3828, Uncharacterized conserved protein
           [Function unknown].
          Length = 457

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 5   INHLFINIFYPILWYTFPLMILISIQISIMISIRGR 40
           +N LF+   YP+ WY  P++    I  S +    GR
Sbjct: 153 LNLLFL--SYPVGWYLPPILFYADIFRSELFGWLGR 186


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.335    0.148    0.467 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,042,292
Number of extensions: 46890
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 18
Length of query: 78
Length of database: 6,263,737
Length adjustment: 48
Effective length of query: 30
Effective length of database: 5,226,505
Effective search space: 156795150
Effective search space used: 156795150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.4 bits)