RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781184|ref|YP_003065597.1| hypothetical protein
CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>gnl|CDD|162870 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
           sucrose phosphate phosphatase, plant.  Members of this
           family are sucrose-phosphate synthases of plants. This
           enzyme is known to exist in multigene families in
           several species of both monocots and dicots. The
           N-terminal domain is the glucosyltransferase domain.
           Members of this family also have a variable linker
           region and a C-terminal domain that resembles sucrose
           phosphate phosphatase (SPP) (EC 3.1.3.24) (see
           TIGR01485), the next and final enzyme of sucrose
           biosynthesis. The SPP-like domain likely serves a
           binding and not a catalytic function, as the reported
           SPP is always encoded by a distinct protein.
          Length = 1050

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 55  VERKWIVFQRRAENCYARFI 74
           +ERK     RR  +CY RF+
Sbjct: 407 LERKLRARARRGVSCYGRFM 426


>gnl|CDD|184289 PRK13737, PRK13737, conjugal transfer pilus assembly protein TraU;
           Provisional.
          Length = 330

 Score = 24.7 bits (54), Expect = 4.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 13  FYPILWYTFPLMILISIQISI 33
           FY + WY +PL   ++I  S+
Sbjct: 131 FYHVHWYKYPLTYWLNIITSL 151


>gnl|CDD|148634 pfam07138, DUF1386, Protein of unknown function (DUF1386).  This
           family consists of several hypothetical
           Nucleopolyhedrovirus proteins of around 350 residues in
           length. The function of this family is unknown.
          Length = 324

 Score = 24.7 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 7/27 (25%)

Query: 58  KWIVFQRRAENC-------YARFIGIG 77
           K+I       NC       Y RF GIG
Sbjct: 202 KFIKPNDDEYNCAEAIAEVYGRFCGIG 228


>gnl|CDD|184995 PRK15035, PRK15035, cytochrome bd-II oxidase subunit 1;
           Provisional.
          Length = 514

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 15  PILWYTFPLMI------LISIQISIMISIRGRIIRENPIVKKTAYFVERKWIVFQ 63
           P+ W +F +M+      L+ + I+++ ++RG+I +   ++K   + +   WI  +
Sbjct: 385 PVFW-SFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIE 438


>gnl|CDD|180760 PRK06934, PRK06934, flavodoxin; Provisional.
          Length = 221

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 10  INIFYPILWYTFPLMILISI 29
           I I YPI WY  P M++ S 
Sbjct: 133 IFIGYPIWWYKMP-MVMYSF 151


>gnl|CDD|181525 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
          Length = 437

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 32  SIMISIRGRIIRENP 46
            +MI I GRI+ +NP
Sbjct: 207 ELMIDIIGRILGQNP 221


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.335    0.148    0.467 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,320,166
Number of extensions: 68625
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 32
Length of query: 78
Length of database: 5,994,473
Length adjustment: 48
Effective length of query: 30
Effective length of database: 4,957,289
Effective search space: 148718670
Effective search space used: 148718670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.0 bits)