RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781184|ref|YP_003065597.1| hypothetical protein
CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 11/48 (22%)

Query: 2    NEAINHLFINIFYPILWYTFPLM-ILISIQISIMISI---RGRIIREN 45
            N A NH F +       Y F ++ I+I+  +++ I     +G+ IREN
Sbjct: 1647 NRADNH-FKDT------YGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687



 Score = 24.9 bits (54), Expect = 4.9
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 14/45 (31%)

Query: 20  TFPLMIL--ISIQISI---------MISIRGRIIRE--NPIVKKT 51
            +P   L    ++ S+         M+SI   + +E     V KT
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKT 356


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.335    0.148    0.467 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 721,206
Number of extensions: 26713
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 5,693,230
Length adjustment: 47
Effective length of query: 31
Effective length of database: 4,553,762
Effective search space: 141166622
Effective search space used: 141166622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.4 bits)