Query gi|254781185|ref|YP_003065598.1| hypothetical protein CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 23:16:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781185.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hn2_A 2-dehydropantoate 2-re 22.4 69 0.0021 15.3 3.2 36 5-40 9-44 (135)
2 >2ew2_A 2-dehydropantoate 2-re 17.5 85 0.0025 14.8 2.2 34 7-40 11-44 (134)
3 >3ghy_A Ketopantoate reductase 15.9 66 0.002 15.4 1.3 35 6-40 9-43 (137)
4 >1rkl_A Dolichyl-diphosphoolig 13.2 1E+02 0.0031 14.3 1.7 12 6-17 8-19 (36)
5 >1wu3_I Interferon beta, IFN-b 12.4 1.3E+02 0.0037 13.9 3.0 32 9-40 85-125 (161)
6 >1l8w_A VLSE1; variable surfac 9.4 77 0.0023 15.0 0.0 26 13-38 3-28 (348)
7 >3hwr_A 2-dehydropantoate 2-re 9.2 1.7E+02 0.0049 13.3 3.3 35 6-40 10-44 (130)
8 >3ego_A Probable 2-dehydropant 8.7 1.7E+02 0.0052 13.2 3.5 36 6-41 10-45 (135)
9 >2k1k_A Ephrin type-A receptor 6.9 2.1E+02 0.0063 12.8 1.9 11 8-18 14-24 (38)
10 >2zkq_b 40S ribosomal protein 6.7 1.2E+02 0.0036 14.0 0.1 22 15-36 17-38 (295)
No 1
>>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} (A:178-312)
Probab=22.37 E-value=69 Score=15.25 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
Q ss_conf 112799999999992374220100024999999983
Q gi|254781185|r 5 NIGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLI 40 (42)
Q Consensus 5 niginiifglvlvlsgcsigeqkknnsvkkyfnkli 40 (42)
...+|..+..+-++.+|+.|+-..+......+..++
T Consensus 9 Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~l~~~l~ 44 (135)
T 3hn2_A 9 KLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIM 44 (135)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHCCCHHHHHCCHHHHHHHHHHH
T ss_conf 876301422899986888887754999999999999
No 2
>>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, PSI; HET: MSE; 2.00A {Enterococcus faecalis V583} (A:183-316)
Probab=17.53 E-value=85 Score=14.80 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
Q ss_conf 2799999999992374220100024999999983
Q gi|254781185|r 7 GINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLI 40 (42)
Q Consensus 7 giniifglvlvlsgcsigeqkknnsvkkyfnkli 40 (42)
-+|..|..+-++.+|++|+-..+......+..++
T Consensus 11 ~~n~~~n~l~al~~~~~g~~~~~~~~~~l~~~l~ 44 (134)
T 2ew2_A 11 CVNGTLNGLCTILDCNIAEFGALPVSESLVKTLI 44 (134)
T ss_dssp HHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 4355421077775243566533857799999999
No 3
>>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2} (A:199-335)
Probab=15.91 E-value=66 Score=15.36 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
Q ss_conf 12799999999992374220100024999999983
Q gi|254781185|r 6 IGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLI 40 (42)
Q Consensus 6 iginiifglvlvlsgcsigeqkknnsvkkyfnkli 40 (42)
.-+|..|..+-++.+|+.|+--.+...+..+..++
T Consensus 9 l~~n~~~n~l~al~~~~~~~l~~~~~~~~l~~~l~ 43 (137)
T 3ghy_A 9 LWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVM 43 (137)
T ss_dssp HHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH
T ss_conf 44232236888875356532321547788877667
No 4
>>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} (A:)
Probab=13.19 E-value=1e+02 Score=14.35 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 127999999999
Q gi|254781185|r 6 IGINIIFGLVLV 17 (42)
Q Consensus 6 iginiifglvlv 17 (42)
-|+-|+||.+..
T Consensus 8 n~~~i~fgi~mm 19 (36)
T 1rkl_A 8 NSLAITFGIVMM 19 (36)
T ss_dssp GHHHHHHHHHHH
T ss_pred CCEEEEHHHHHH
T ss_conf 847731357899
No 5
>>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} (I:)
Probab=12.39 E-value=1.3e+02 Score=13.93 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHC---------HHHHHHHHHH
Q ss_conf 9999999999237422010002---------4999999983
Q gi|254781185|r 9 NIIFGLVLVLSGCSIGEQKKNN---------SVKKYFNKLI 40 (42)
Q Consensus 9 niifglvlvlsgcsigeqkknn---------svkkyfnkli 40 (42)
|++..-.--|.-|-..+.+++. .+|+||+++-
T Consensus 85 ~~L~~Ql~~Le~C~~~~~~~~~~~~~~~~~l~lkkYF~rI~ 125 (161)
T 1wu3_I 85 DELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYYWRVQ 125 (161)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999986446666677753369999999999
No 6
>>1l8w_A VLSE1; variable surface protein, VMP-like sequence, immune system; 2.30A {Borrelia burgdorferi} (A:)
Probab=9.35 E-value=77 Score=15.02 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHHHCCCCCCHHHHCHHHHHHHH
Q ss_conf 99999923742201000249999999
Q gi|254781185|r 13 GLVLVLSGCSIGEQKKNNSVKKYFNK 38 (42)
Q Consensus 13 glvlvlsgcsigeqkknnsvkkyfnk 38 (42)
.+++|+-||.-|--.+..+..+++.-
T Consensus 3 ~~~~~~~~c~~~~~~~~~~~~~~~~~ 28 (348)
T 1l8w_A 3 GSHHHHHHGSSQVADKDDPTNKFYQS 28 (348)
T ss_dssp --------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 76434356765545344743789999
No 7
>>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha JMP134} (A:189-318)
Probab=9.16 E-value=1.7e+02 Score=13.32 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
Q ss_conf 12799999999992374220100024999999983
Q gi|254781185|r 6 IGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLI 40 (42)
Q Consensus 6 iginiifglvlvlsgcsigeqkknnsvkkyfnkli 40 (42)
.-+|..+..+-++.+|+.|+--.+.....-+..++
T Consensus 10 l~~n~~~n~l~al~~~~~~~i~~~~~~~~l~~~l~ 44 (130)
T 3hwr_A 10 LILNCAYNALSAITQLPYGRLVRGEGVEAVXRDVX 44 (130)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
T ss_conf 66666654345553454305543956666666579
No 8
>>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} (A:173-307)
Probab=8.69 E-value=1.7e+02 Score=13.22 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHC
Q ss_conf 127999999999923742201000249999999832
Q gi|254781185|r 6 IGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLIQ 41 (42)
Q Consensus 6 iginiifglvlvlsgcsigeqkknnsvkkyfnkliq 41 (42)
.-+|..+..+-++.+|++|+--.+......+..+++
T Consensus 10 l~~n~~~n~ltal~~~~~g~l~~~~~~~~l~~~l~~ 45 (135)
T 3ego_A 10 LIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQ 45 (135)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 422311233666317887425432257999999999
No 9
>>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:)
Probab=6.93 E-value=2.1e+02 Score=12.78 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 79999999999
Q gi|254781185|r 8 INIIFGLVLVL 18 (42)
Q Consensus 8 iniifglvlvl 18 (42)
..+||||.|-+
T Consensus 14 vavifglll~~ 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 89999999999
No 10
>>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:)
Probab=6.73 E-value=1.2e+02 Score=14.00 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=17.5
Q ss_pred HHHHHCCCCCCHHHHCHHHHHH
Q ss_conf 9999237422010002499999
Q gi|254781185|r 15 VLVLSGCSIGEQKKNNSVKKYF 36 (42)
Q Consensus 15 vlvlsgcsigeqkknnsvkkyf 36 (42)
-|.-+|+.+|.|+-|...+.|.
T Consensus 17 ~ll~ag~H~G~~~wnp~m~~yI 38 (295)
T 2zkq_b 17 KFLAAGTHLGGTNLDFQMEQYI 38 (295)
T ss_dssp HHHHHTTTBCCSCCCTGGGGGE
T ss_pred HHHHHCEECCCCCCCCCCCCCC
T ss_conf 9998487317678787751303
Done!