RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781185|ref|YP_003065598.1| hypothetical protein
CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase,
          membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
          {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
          Length = 315

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 4  KNIGINIIFGLVLVLSGCS 22
          K++G   +F   ++LSGC+
Sbjct: 8  KSLGWLSLFAGTVLLSGCN 26


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.385 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 314,173
Number of extensions: 7533
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 42
Length of database: 5,693,230
Length adjustment: 15
Effective length of query: 27
Effective length of database: 5,329,570
Effective search space: 143898390
Effective search space used: 143898390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)