RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781185|ref|YP_003065598.1| hypothetical protein CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62] (42 letters) >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315 Score = 24.5 bits (53), Expect = 6.2 Identities = 7/19 (36%), Positives = 13/19 (68%) Query: 4 KNIGINIIFGLVLVLSGCS 22 K++G +F ++LSGC+ Sbjct: 8 KSLGWLSLFAGTVLLSGCN 26 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.385 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 314,173 Number of extensions: 7533 Number of successful extensions: 18 Number of sequences better than 10.0: 1 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 1 Length of query: 42 Length of database: 5,693,230 Length adjustment: 15 Effective length of query: 27 Effective length of database: 5,329,570 Effective search space: 143898390 Effective search space used: 143898390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.3 bits)