BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781185|ref|YP_003065598.1| hypothetical protein
CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781185|ref|YP_003065598.1| hypothetical protein CLIBASIA_05460 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 42

 Score = 81.6 bits (200), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MVSKNIGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLIQR 42
          MVSKNIGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLIQR
Sbjct: 1  MVSKNIGINIIFGLVLVLSGCSIGEQKKNNSVKKYFNKLIQR 42


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 20.8 bits (42), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 10  IIFGLVLVLSGCSIGEQKKNNSVKKYFNK 38
           II+GL L  +  +IGE+  N + +   +K
Sbjct: 121 IIYGLALRRTLITIGEEMVNAAYEASLDK 149


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 20.4 bits (41), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 6/14 (42%), Positives = 13/14 (92%)

Query: 27   KKNNSVKKYFNKLI 40
            K N+++K++FNK++
Sbjct: 1682 KNNHAIKEWFNKIL 1695


>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 397

 Score = 20.0 bits (40), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 22 SIGEQKKNNSVK 33
          SI E+K+NNS K
Sbjct: 29 SIQEEKRNNSTK 40


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.140    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,721
Number of Sequences: 1233
Number of extensions: 702
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 42
length of database: 328,796
effective HSP length: 16
effective length of query: 26
effective length of database: 309,068
effective search space:  8035768
effective search space used:  8035768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)