Query gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:50:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781186.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1kqf_B FDH-N beta, formate de 61.8 2.9 8.5E-05 22.7 0.9 15 6-20 25-39 (49)
2 >2dg5_B Gamma-glutamyltranspep 42.9 17 0.00051 18.8 2.4 29 2-31 3-31 (37)
3 >2chu_A CEUE, enterochelin upt 14.6 57 0.0017 16.2 0.7 29 4-32 55-83 (105)
4 >1mky_A Probable GTP-binding p 12.7 1.2E+02 0.0035 14.6 1.9 24 5-28 33-56 (80)
5 >1ci4_A Protein (barrier-TO-au 11.6 1.1E+02 0.0033 14.7 1.5 27 14-40 23-49 (89)
6 >2inp_L Phenol hydroxylase com 11.5 55 0.0016 16.3 -0.1 42 3-44 23-64 (89)
7 >3gfv_A Uncharacterized ABC tr 11.0 45 0.0013 16.7 -0.7 21 4-24 54-74 (104)
8 >2mob_A Protein (methane monoo 10.3 43 0.0013 16.8 -1.0 40 4-43 62-101 (138)
9 >2j4b_A TAF5, transcription in 9.2 1.4E+02 0.0041 14.3 1.2 22 20-41 13-34 (42)
10 >2hjg_A GTP-binding protein EN 8.8 1.9E+02 0.0055 13.6 2.6 23 5-27 37-59 (83)
No 1
>>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (B:1-21,B:111-138)
Probab=61.84 E-value=2.9 Score=22.74 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=12.2
Q ss_pred CCCEEEEEECCCHHH
Q ss_conf 687799983460122
Q gi|254781186|r 6 NPDAIVLYANGIGAV 20 (45)
Q Consensus 6 npdaivlyangigav 20 (45)
.|.|||-|+|||-..
T Consensus 25 spGAIvQyaNGIVDF 39 (49)
T 1kqf_B 25 SAGAIIQYANGIVDF 39 (49)
T ss_dssp STTSEEEETTSCEEE
T ss_pred CCCCEEECCCCCEEE
T ss_conf 454036525883762
No 2
>>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} (B:123-159)
Probab=42.94 E-value=17 Score=18.82 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCC
Q ss_conf 844368779998346012237676408824
Q gi|254781186|r 2 AHQYNPDAIVLYANGIGAVTANYLENLNYS 31 (45)
Q Consensus 2 ahqynpdaivlyangigavtanylenlnys 31 (45)
-||+-||.+ .|-.|+..-+.+.|+...|.
T Consensus 3 HHQwlPd~v-~~E~g~~~~~~~~L~~~Gh~ 31 (37)
T 2dg5_B 3 HHQWLPDEL-RVEKGFSPDTLKLLEAKGQK 31 (37)
T ss_dssp ECCSSSCCE-EECTTSCHHHHHHHHHTTCC
T ss_pred CCCCCCEEE-EECCCCCHHHHHHHHHCCCE
T ss_conf 113223066-21342148788788756863
No 3
>>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} (A:170-274)
Probab=14.64 E-value=57 Score=16.22 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=17.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCCH
Q ss_conf 43687799983460122376764088247
Q gi|254781186|r 4 QYNPDAIVLYANGIGAVTANYLENLNYSP 32 (45)
Q Consensus 4 qynpdaivlyangigavtanylenlnysp 32 (45)
+.|||.|+++..+.+.-....++.|--+|
T Consensus 55 ~~~pD~i~v~~~~~~~~~~~~~~~l~~~p 83 (105)
T 2chu_A 55 EKNPDYIFVVDRNVILGNKERAQGILDNA 83 (105)
T ss_dssp HHCCSEEEEEETTTTTTCSCCHHHHTCST
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHCCH
T ss_conf 50998899934776657689999987093
No 4
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:360-439)
Probab=12.66 E-value=1.2e+02 Score=14.64 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCC
Q ss_conf 368779998346012237676408
Q gi|254781186|r 5 YNPDAIVLYANGIGAVTANYLENL 28 (45)
Q Consensus 5 ynpdaivlyangigavtanylenl 28 (45)
-+|-.+|+++|....+..+|..-|
T Consensus 33 ~~PPtFvlf~N~~~~~~~sY~ryL 56 (80)
T 1mky_A 33 IKPPTFLFFVNSIEKVKNPQKIFL 56 (80)
T ss_dssp TTTTEEEEEESCSTTCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 999889999788555987899999
No 5
>>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} (A:)
Probab=11.62 E-value=1.1e+02 Score=14.70 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.0
Q ss_pred ECCCHHHHHHHHHCCCCCHHHHHHCCH
Q ss_conf 346012237676408824799983002
Q gi|254781186|r 14 ANGIGAVTANYLENLNYSPIEKILGQR 40 (45)
Q Consensus 14 angigavtanylenlnyspiekilgqr 40 (45)
-.|||.+-+.-|+.-.|.---..|||-
T Consensus 23 l~GIg~~lg~~L~~kGfdKAyvvLGqf 49 (89)
T 1ci4_A 23 LAGIGEVLGKKLEERGFDKAYVVLGQF 49 (89)
T ss_dssp STTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 688638998899984853999999999
No 6
>>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A (L:)
Probab=11.54 E-value=55 Score=16.27 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHCCHHHCC
Q ss_conf 443687799983460122376764088247999830023217
Q gi|254781186|r 3 HQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVA 44 (45)
Q Consensus 3 hqynpdaivlyangigavtanylenlnyspiekilgqrssva 44 (45)
.+-||++.|.+..+.=-+.+.-.--++..-||..||+.-.+.
T Consensus 23 ~~dnP~~~V~d~~~~vrI~a~g~l~i~~~tieE~LGr~~~~~ 64 (89)
T 2inp_L 23 MEDNPDAEMQHQPAMIRIQAEKRLVINRETMEEKLGRDWDVQ 64 (89)
T ss_dssp HSSCTTCEEEEETTEEEEECBSEEEECHHHHHHHHTSCCCGG
T ss_pred HHHCCCCEEEECCCEEEECCCCEEEEEHHHHHHHHCCCCCHH
T ss_conf 847969899825878999039859998789899858986178
No 7
>>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp} (A:172-275)
Probab=11.04 E-value=45 Score=16.75 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCCCCEEEEEECCCHHHHHHH
Q ss_conf 436877999834601223767
Q gi|254781186|r 4 QYNPDAIVLYANGIGAVTANY 24 (45)
Q Consensus 4 qynpdaivlyangigavtany 24 (45)
+.|||.|+++..+.+.-+...
T Consensus 54 ~~~pD~ii~~~~~~~~~~~~~ 74 (104)
T 3gfv_A 54 KTNPDYLFVIDRGTAIGETSS 74 (104)
T ss_dssp HHCCSEEEEEEHHHHHTSCCC
T ss_pred HHCCCEEEEECCCCCCCCHHH
T ss_conf 749998999747876565689
No 8
>>2mob_A Protein (methane monooxygenase regulatory protein B); oxidoreductase, methane oxidation; NMR {Methylosinus trichosporium} (A:)
Probab=10.27 E-value=43 Score=16.84 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHCCHHHC
Q ss_conf 4368779998346012237676408824799983002321
Q gi|254781186|r 4 QYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43 (45)
Q Consensus 4 qynpdaivlyangigavtanylenlnyspiekilgqrssv 43 (45)
.-||++.|.+..+.=-+.+.----++..-||..||+.-.+
T Consensus 62 eDNP~~~V~d~pa~vrI~a~g~L~i~r~tieE~LGr~~d~ 101 (138)
T 2mob_A 62 AKNPSIVVEDKAGFWWIKADGAIEIDAAEAGELLGKPFSV 101 (138)
T ss_dssp HTSSCCEEEECSSCEEEEESSEEEEECHHHHHHTCSTHHH
T ss_pred CCCCCEEEECCCCEEEEECCCEEEEEHHHHHHHHCCCCCH
T ss_conf 5599769962687799904982998778989985898738
No 9
>>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/90-100 kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} (A:97-138)
Probab=9.18 E-value=1.4e+02 Score=14.28 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCCHHHHHHCCHH
Q ss_conf 2376764088247999830023
Q gi|254781186|r 20 VTANYLENLNYSPIEKILGQRS 41 (45)
Q Consensus 20 vtanylenlnyspiekilgqrs 41 (45)
.--|++|.-|..-|-|++.|--
T Consensus 13 LLiNFlEEnn~~YILK~lNqyl 34 (42)
T 2j4b_A 13 LLINFLEERNLTYILKILNQHL 34 (42)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHE
T ss_pred HHHHHHHHCCCHHHHHHHHHHE
T ss_conf 9999998588739999999843
No 10
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:354-436)
Probab=8.80 E-value=1.9e+02 Score=13.60 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 36877999834601223767640
Q gi|254781186|r 5 YNPDAIVLYANGIGAVTANYLEN 27 (45)
Q Consensus 5 ynpdaivlyangigavtanylen 27 (45)
.+|-.+|+++|.-..+..+|..-
T Consensus 37 ~~PPtfvlf~N~~~~~~~sY~Ry 59 (83)
T 2hjg_A 37 VKPPSFVVFVNDPELXHFSYERF 59 (83)
T ss_dssp TTTTEEEEEESCGGGCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99998999976855598789999
Done!