Query         gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:36:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781186.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uxja1 c.2.1.5 (A:2-143) Mala  25.2     6.7 0.00049   18.9  -0.1   35    4-39    107-142 (142)
  2 d1guza1 c.2.1.5 (A:1-142) Mala  16.4      11 0.00078   17.9  -0.6   34    4-38    107-141 (142)
  3 d1a5za1 c.2.1.5 (A:22-163) Lac  15.7     9.3 0.00068   18.2  -1.1   34    4-38    105-139 (140)
  4 d1a77a1 a.60.7.1 (A:209-316) F  13.8      38  0.0028   15.1   1.7   31    3-38     15-45  (108)
  5 d1pzga1 c.2.1.5 (A:14-163) Lac  13.8      13 0.00098   17.4  -0.7   34    4-38    119-153 (154)
  6 d1szpa1 a.60.4.1 (A:81-144) DN  13.6      43  0.0031   14.9   1.9   26   14-39      8-33  (64)
  7 d1b22a_ a.60.4.1 (A:) DNA repa  11.3      24  0.0017   16.1  -0.0   26   14-39     15-40  (70)
  8 d1ci4a_ a.60.5.1 (A:) Barrier-  11.1      49  0.0036   14.6   1.5   27   14-40     23-49  (89)
  9 d2fmpa2 a.60.12.1 (A:92-148) D  10.5      54   0.004   14.3   1.6   24   15-38     13-36  (57)
 10 d1s6ya1 c.2.1.5 (A:4-172) 6-ph  10.4      14   0.001   17.3  -1.4   32    4-38    135-167 (169)

No 1  
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=25.25  E-value=6.7  Score=18.93  Aligned_cols=35  Identities=29%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             CCCCCEEEEEE-CCCHHHHHHHHHCCCCCHHHHHHCC
Q ss_conf             43687799983-4601223767640882479998300
Q gi|254781186|r    4 QYNPDAIVLYA-NGIGAVTANYLENLNYSPIEKILGQ   39 (45)
Q Consensus         4 qynpdaivlya-ngigavtanylenlnyspiekilgq   39 (45)
                      .|+|+++++.. |-....|.-..+...| |-++++||
T Consensus       107 k~~p~aivivvtNPvDv~t~~~~~~sgl-p~~rViG~  142 (142)
T d1uxja1         107 PLSPNAVIIMVNNPLDAMTYLAAEVSGF-PKERVIGQ  142 (142)
T ss_dssp             GGCTTCEEEECSSSHHHHHHHHHHHHCC-CGGGEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCCCCCCC
T ss_conf             4489944999579417799999999782-91344085


No 2  
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}
Probab=16.41  E-value=11  Score=17.90  Aligned_cols=34  Identities=18%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             436877999-83460122376764088247999830
Q gi|254781186|r    4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus         4 qynpdaivl-yangigavtanylenlnyspiekilg   38 (45)
                      .|+|+++++ +.|-...+|.-.++..+| |-+|++|
T Consensus       107 ~~~p~aivivvtNPvd~~~~~~~~~sg~-p~~rviG  141 (142)
T d1guza1         107 KHSKNPIIIVVSNPLDIMTHVAWVRSGL-PKERVIG  141 (142)
T ss_dssp             HHCSSCEEEECCSSHHHHHHHHHHHHCS-CGGGEEE
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHCC-CHHHEEE
T ss_conf             2499718999259728899999998697-8675861


No 3  
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=15.72  E-value=9.3  Score=18.20  Aligned_cols=34  Identities=29%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             436877999-83460122376764088247999830
Q gi|254781186|r    4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus         4 qynpdaivl-yangigavtanylenlnyspiekilg   38 (45)
                      +|+|+++++ +.|-....|.-..+..+|. -+|++|
T Consensus       105 ~~~p~aivivvtNPvd~~t~~~~k~sg~p-~~rViG  139 (140)
T d1a5za1         105 KYAPDSIVIVVTNPVDVLTYFFLKESGMD-PRKVFG  139 (140)
T ss_dssp             HHCTTCEEEECSSSHHHHHHHHHHHHTCC-TTTEEE
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHHHCCC-CCCEEC
T ss_conf             31998179994793799999999987839-112057


No 4  
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.85  E-value=38  Score=15.10  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             443687799983460122376764088247999830
Q gi|254781186|r    3 HQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus         3 hqynpdaivlyangigavtanylenlnyspiekilg   38 (45)
                      -.||++.|    .|||.+||--|-. .|..+|.++-
T Consensus        15 ~dyn~pGV----~GIGpktA~klIk-~~g~ie~l~~   45 (108)
T d1a77a1          15 TDYNPGGV----KGIGFKRAYELVR-SGVAKDVLKK   45 (108)
T ss_dssp             CTTSTTCS----TTCCHHHHHHHHH-TTCHHHHHHH
T ss_pred             CCCCCCCC----CCCCHHHHHHHHH-HCCCHHHHHH
T ss_conf             76887789----9917899999999-8388999987


No 5  
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}
Probab=13.81  E-value=13  Score=17.40  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=18.9

Q ss_pred             CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             436877999-83460122376764088247999830
Q gi|254781186|r    4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus         4 qynpdaivl-yangigavtanylenlnyspiekilg   38 (45)
                      +|+|+++++ ..|-...+|.-..+...|. -++++|
T Consensus       119 ~~~p~aiviivsNPvd~lt~~~~~~sg~p-~~rViG  153 (154)
T d1pzga1         119 KYCPKTFIIVVTNPLDCMVKVMCEASGVP-TNMICG  153 (154)
T ss_dssp             HHCTTCEEEECCSSHHHHHHHHHHHHCCC-GGGEEE
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHHHCCC-HHCEEC
T ss_conf             34898189996795799999999996858-201804


No 6  
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.58  E-value=43  Score=14.85  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             ECCCHHHHHHHHHCCCCCHHHHHHCC
Q ss_conf             34601223767640882479998300
Q gi|254781186|r   14 ANGIGAVTANYLENLNYSPIEKILGQ   39 (45)
Q Consensus        14 angigavtanylenlnyspiekilgq   39 (45)
                      ..|||..+++-|..-.|..+|+|.-.
T Consensus         8 ~~Gig~~~~~kL~~aG~~Tve~ia~~   33 (64)
T d1szpa1           8 VNGITMADVKKLRESGLHTAEAVAYA   33 (64)
T ss_dssp             CTTCCHHHHHHHHTTSCCSHHHHHHS
T ss_pred             HCCCCHHHHHHHHHCCCCCHHHHHHC
T ss_conf             77999999999999699749999868


No 7  
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.29  E-value=24  Score=16.14  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             ECCCHHHHHHHHHCCCCCHHHHHHCC
Q ss_conf             34601223767640882479998300
Q gi|254781186|r   14 ANGIGAVTANYLENLNYSPIEKILGQ   39 (45)
Q Consensus        14 angigavtanylenlnyspiekilgq   39 (45)
                      ..|||..+++-|.+-.|..+++|+..
T Consensus        15 ~~Gig~~~i~kL~~aG~~Tv~~i~~a   40 (70)
T d1b22a_          15 QCGINANDVKKLEEAGFHTVEAVAYA   40 (70)
T ss_dssp             HTTCSHHHHHHHHTTCCSSGGGBTSS
T ss_pred             HCCCCHHHHHHHHHCCCCHHHHHHHC
T ss_conf             08999999999999686349999848


No 8  
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.09  E-value=49  Score=14.56  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=24.0

Q ss_pred             ECCCHHHHHHHHHCCCCCHHHHHHCCH
Q ss_conf             346012237676408824799983002
Q gi|254781186|r   14 ANGIGAVTANYLENLNYSPIEKILGQR   40 (45)
Q Consensus        14 angigavtanylenlnyspiekilgqr   40 (45)
                      -.|||.+-+.-||.-.|.---.+|||-
T Consensus        23 l~GIG~~lg~~L~~kGfdKAy~vLGqf   49 (89)
T d1ci4a_          23 LAGIGEVLGKKLEERGFDKAYVVLGQF   49 (89)
T ss_dssp             STTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             688638998899984853999999999


No 9  
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.53  E-value=54  Score=14.33  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             460122376764088247999830
Q gi|254781186|r   15 NGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus        15 ngigavtanylenlnyspiekilg   38 (45)
                      -|||..+|+-+-+..+..|+.+.-
T Consensus        13 ~GvGp~~A~~l~~~Gi~ti~dLr~   36 (57)
T d2fmpa2          13 SGIGPSAARKFVDEGIKTLEDLRK   36 (57)
T ss_dssp             TTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred             CCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             431499999999948998999976


No 10 
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.43  E-value=14  Score=17.29  Aligned_cols=32  Identities=34%  Similarity=0.576  Sum_probs=17.5

Q ss_pred             CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             436877999-83460122376764088247999830
Q gi|254781186|r    4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus         4 qynpdaivl-yangigavtanylenlnyspiekilg   38 (45)
                      +|+|||+++ +.|-...+|.-...-   +|-+|++|
T Consensus       135 ~~~pda~~i~vtNPvdv~t~~~~k~---~p~~kviG  167 (169)
T d1s6ya1         135 ELCPDAWLINFTNPAGMVTEAVLRY---TKQEKVVG  167 (169)
T ss_dssp             HHCTTCEEEECSSSHHHHHHHHHHH---CCCCCEEE
T ss_pred             HCCCCEEEEEECCHHHHHHHHHHHH---CCCCCEEE
T ss_conf             0599849999578589999999997---89878795


Done!