Query gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:36:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781186.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1uxja1 c.2.1.5 (A:2-143) Mala 25.2 6.7 0.00049 18.9 -0.1 35 4-39 107-142 (142) 2 d1guza1 c.2.1.5 (A:1-142) Mala 16.4 11 0.00078 17.9 -0.6 34 4-38 107-141 (142) 3 d1a5za1 c.2.1.5 (A:22-163) Lac 15.7 9.3 0.00068 18.2 -1.1 34 4-38 105-139 (140) 4 d1a77a1 a.60.7.1 (A:209-316) F 13.8 38 0.0028 15.1 1.7 31 3-38 15-45 (108) 5 d1pzga1 c.2.1.5 (A:14-163) Lac 13.8 13 0.00098 17.4 -0.7 34 4-38 119-153 (154) 6 d1szpa1 a.60.4.1 (A:81-144) DN 13.6 43 0.0031 14.9 1.9 26 14-39 8-33 (64) 7 d1b22a_ a.60.4.1 (A:) DNA repa 11.3 24 0.0017 16.1 -0.0 26 14-39 15-40 (70) 8 d1ci4a_ a.60.5.1 (A:) Barrier- 11.1 49 0.0036 14.6 1.5 27 14-40 23-49 (89) 9 d2fmpa2 a.60.12.1 (A:92-148) D 10.5 54 0.004 14.3 1.6 24 15-38 13-36 (57) 10 d1s6ya1 c.2.1.5 (A:4-172) 6-ph 10.4 14 0.001 17.3 -1.4 32 4-38 135-167 (169) No 1 >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Probab=25.25 E-value=6.7 Score=18.93 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=20.6 Q ss_pred CCCCCEEEEEE-CCCHHHHHHHHHCCCCCHHHHHHCC Q ss_conf 43687799983-4601223767640882479998300 Q gi|254781186|r 4 QYNPDAIVLYA-NGIGAVTANYLENLNYSPIEKILGQ 39 (45) Q Consensus 4 qynpdaivlya-ngigavtanylenlnyspiekilgq 39 (45) .|+|+++++.. |-....|.-..+...| |-++++|| T Consensus 107 k~~p~aivivvtNPvDv~t~~~~~~sgl-p~~rViG~ 142 (142) T d1uxja1 107 PLSPNAVIIMVNNPLDAMTYLAAEVSGF-PKERVIGQ 142 (142) T ss_dssp GGCTTCEEEECSSSHHHHHHHHHHHHCC-CGGGEEEC T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCCCCCCC T ss_conf 4489944999579417799999999782-91344085 No 2 >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Probab=16.41 E-value=11 Score=17.90 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=20.2 Q ss_pred CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 436877999-83460122376764088247999830 Q gi|254781186|r 4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 4 qynpdaivl-yangigavtanylenlnyspiekilg 38 (45) .|+|+++++ +.|-...+|.-.++..+| |-+|++| T Consensus 107 ~~~p~aivivvtNPvd~~~~~~~~~sg~-p~~rviG 141 (142) T d1guza1 107 KHSKNPIIIVVSNPLDIMTHVAWVRSGL-PKERVIG 141 (142) T ss_dssp HHCSSCEEEECCSSHHHHHHHHHHHHCS-CGGGEEE T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCC-CHHHEEE T ss_conf 2499718999259728899999998697-8675861 No 3 >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Probab=15.72 E-value=9.3 Score=18.20 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=21.5 Q ss_pred CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 436877999-83460122376764088247999830 Q gi|254781186|r 4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 4 qynpdaivl-yangigavtanylenlnyspiekilg 38 (45) +|+|+++++ +.|-....|.-..+..+|. -+|++| T Consensus 105 ~~~p~aivivvtNPvd~~t~~~~k~sg~p-~~rViG 139 (140) T d1a5za1 105 KYAPDSIVIVVTNPVDVLTYFFLKESGMD-PRKVFG 139 (140) T ss_dssp HHCTTCEEEECSSSHHHHHHHHHHHHTCC-TTTEEE T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCC-CCCEEC T ss_conf 31998179994793799999999987839-112057 No 4 >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=13.85 E-value=38 Score=15.10 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=21.4 Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 443687799983460122376764088247999830 Q gi|254781186|r 3 HQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 3 hqynpdaivlyangigavtanylenlnyspiekilg 38 (45) -.||++.| .|||.+||--|-. .|..+|.++- T Consensus 15 ~dyn~pGV----~GIGpktA~klIk-~~g~ie~l~~ 45 (108) T d1a77a1 15 TDYNPGGV----KGIGFKRAYELVR-SGVAKDVLKK 45 (108) T ss_dssp CTTSTTCS----TTCCHHHHHHHHH-TTCHHHHHHH T ss_pred CCCCCCCC----CCCCHHHHHHHHH-HCCCHHHHHH T ss_conf 76887789----9917899999999-8388999987 No 5 >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Probab=13.81 E-value=13 Score=17.40 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=18.9 Q ss_pred CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 436877999-83460122376764088247999830 Q gi|254781186|r 4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 4 qynpdaivl-yangigavtanylenlnyspiekilg 38 (45) +|+|+++++ ..|-...+|.-..+...|. -++++| T Consensus 119 ~~~p~aiviivsNPvd~lt~~~~~~sg~p-~~rViG 153 (154) T d1pzga1 119 KYCPKTFIIVVTNPLDCMVKVMCEASGVP-TNMICG 153 (154) T ss_dssp HHCTTCEEEECCSSHHHHHHHHHHHHCCC-GGGEEE T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCC-HHCEEC T ss_conf 34898189996795799999999996858-201804 No 6 >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=13.58 E-value=43 Score=14.85 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.7 Q ss_pred ECCCHHHHHHHHHCCCCCHHHHHHCC Q ss_conf 34601223767640882479998300 Q gi|254781186|r 14 ANGIGAVTANYLENLNYSPIEKILGQ 39 (45) Q Consensus 14 angigavtanylenlnyspiekilgq 39 (45) ..|||..+++-|..-.|..+|+|.-. T Consensus 8 ~~Gig~~~~~kL~~aG~~Tve~ia~~ 33 (64) T d1szpa1 8 VNGITMADVKKLRESGLHTAEAVAYA 33 (64) T ss_dssp CTTCCHHHHHHHHTTSCCSHHHHHHS T ss_pred HCCCCHHHHHHHHHCCCCCHHHHHHC T ss_conf 77999999999999699749999868 No 7 >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=11.29 E-value=24 Score=16.14 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2 Q ss_pred ECCCHHHHHHHHHCCCCCHHHHHHCC Q ss_conf 34601223767640882479998300 Q gi|254781186|r 14 ANGIGAVTANYLENLNYSPIEKILGQ 39 (45) Q Consensus 14 angigavtanylenlnyspiekilgq 39 (45) ..|||..+++-|.+-.|..+++|+.. T Consensus 15 ~~Gig~~~i~kL~~aG~~Tv~~i~~a 40 (70) T d1b22a_ 15 QCGINANDVKKLEEAGFHTVEAVAYA 40 (70) T ss_dssp HTTCSHHHHHHHHTTCCSSGGGBTSS T ss_pred HCCCCHHHHHHHHHCCCCHHHHHHHC T ss_conf 08999999999999686349999848 No 8 >d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]} Probab=11.09 E-value=49 Score=14.56 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.0 Q ss_pred ECCCHHHHHHHHHCCCCCHHHHHHCCH Q ss_conf 346012237676408824799983002 Q gi|254781186|r 14 ANGIGAVTANYLENLNYSPIEKILGQR 40 (45) Q Consensus 14 angigavtanylenlnyspiekilgqr 40 (45) -.|||.+-+.-||.-.|.---.+|||- T Consensus 23 l~GIG~~lg~~L~~kGfdKAy~vLGqf 49 (89) T d1ci4a_ 23 LAGIGEVLGKKLEERGFDKAYVVLGQF 49 (89) T ss_dssp STTCCHHHHHHHHHTTCCSHHHHHHHH T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHH T ss_conf 688638998899984853999999999 No 9 >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Probab=10.53 E-value=54 Score=14.33 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 460122376764088247999830 Q gi|254781186|r 15 NGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 15 ngigavtanylenlnyspiekilg 38 (45) -|||..+|+-+-+..+..|+.+.- T Consensus 13 ~GvGp~~A~~l~~~Gi~ti~dLr~ 36 (57) T d2fmpa2 13 SGIGPSAARKFVDEGIKTLEDLRK 36 (57) T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHT T ss_pred CCCCHHHHHHHHHHCCCCHHHHHH T ss_conf 431499999999948998999976 No 10 >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Probab=10.43 E-value=14 Score=17.29 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=17.5 Q ss_pred CCCCCEEEE-EECCCHHHHHHHHHCCCCCHHHHHHC Q ss_conf 436877999-83460122376764088247999830 Q gi|254781186|r 4 QYNPDAIVL-YANGIGAVTANYLENLNYSPIEKILG 38 (45) Q Consensus 4 qynpdaivl-yangigavtanylenlnyspiekilg 38 (45) +|+|||+++ +.|-...+|.-...- +|-+|++| T Consensus 135 ~~~pda~~i~vtNPvdv~t~~~~k~---~p~~kviG 167 (169) T d1s6ya1 135 ELCPDAWLINFTNPAGMVTEAVLRY---TKQEKVVG 167 (169) T ss_dssp HHCTTCEEEECSSSHHHHHHHHHHH---CCCCCEEE T ss_pred HCCCCEEEEEECCHHHHHHHHHHHH---CCCCCEEE T ss_conf 0599849999578589999999997---89878795 Done!