BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781186|ref|YP_003065599.1| hypothetical protein
CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
(45 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040863|gb|ACT57659.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 45
Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45
MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD
Sbjct: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSS 42
+ ++YNPDAIV+ NGIG +YL N+++ +E ILGQR S
Sbjct: 363 LINRYNPDAIVIDGNGIGGTVVSYLLNMHHISVEVILGQRRS 404
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43
+ +Y PDAI++ AN GA T +YLE L Y + ++LGQ+ +V
Sbjct: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAV 404
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYS 31
+ ++Y PDA+V+ ANGIG T YL + YS
Sbjct: 363 LINKYKPDAVVVDANGIGVQTYYYLADEGYS 393
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYS 31
+ ++Y PDA+V+ ANGIG T YL + YS
Sbjct: 363 LINKYKPDAVVVDANGIGVQTYYYLADEGYS 393
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,626,633
Number of Sequences: 14124377
Number of extensions: 9185330
Number of successful extensions: 16353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16348
Number of HSP's gapped (non-prelim): 5
length of query: 45
length of database: 4,842,793,630
effective HSP length: 19
effective length of query: 26
effective length of database: 4,574,430,467
effective search space: 118935192142
effective search space used: 118935192142
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)