RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781186|ref|YP_003065599.1| hypothetical protein
CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>1s9c_A Peroxisomal multifunctional enzyme type 2; hot-DOG fold,
          hydratase 2 motif, lyase; 3.00A {Homo sapiens} SCOP:
          d.38.1.4 d.38.1.4 PDB: 2cdh_S
          Length = 298

 Score = 25.1 bits (54), Expect = 4.3
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 3  HQYNPDAIVLYANGIGAVTANYLE 26
          + Y     ++YA G+GA   +  +
Sbjct: 20 YAYTELEAIMYALGVGASIKDPKD 43


>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative
           initiation, ATP-binding, DNA- binding, hydrolase,
           nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB:
           3ezk_A*
          Length = 592

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 1   MAHQYNPDAIVLYANGIGAVTANYL-ENLNYSPI 33
              +YN   + +  N  G   A  L  +L Y  +
Sbjct: 471 YLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGV 504


>3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora
          capsici}
          Length = 332

 Score = 24.7 bits (53), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 5  YNPDAIVLYANGIGA 19
          YN   +++YA GIG 
Sbjct: 54 YNQRDLLMYAVGIGE 68


>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
          hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
          SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
          Length = 280

 Score = 24.2 bits (52), Expect = 7.8
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 3  HQYNPDAIVLYANGIGA 19
           +++   ++LY   +GA
Sbjct: 7  WRFDDRDVILYNIALGA 23


>3khp_A MAOC family protein; ssgcid, NIH, niaid, decode, university of
          washington, emerald biostructures, SBRI, dehydrogenase;
          HET: TLA; 2.30A {Mycobacterium tuberculosis H37RV}
          Length = 311

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 3  HQYNPDAIVLYANGIGA 19
           ++     +LYA G+GA
Sbjct: 38 FEWTDRDTLLYAIGVGA 54


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 372,734
Number of extensions: 10393
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 45
Length of database: 5,693,230
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,256,838
Effective search space: 141934626
Effective search space used: 141934626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)