BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62] (45 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62] Length = 45 Score = 92.8 bits (229), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD Sbjct: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 42.4 bits (98), Expect = 2e-06, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43 + +Y PDAI++ AN GA T +YLE L Y + ++LGQ+ +V Sbjct: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAV 404 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.131 0.369 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,235 Number of Sequences: 1233 Number of extensions: 725 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 45 length of database: 328,796 effective HSP length: 18 effective length of query: 27 effective length of database: 306,602 effective search space: 8278254 effective search space used: 8278254 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 31 (16.5 bits)