HHsearch alignment for GI: 254781187 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=94.56 E-value=0.33 Score=26.37 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCCCEE--EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9999999888875124-555554112--4776148867889999999999997089977999715379999999999999
Q gi|254781187|r 54 WQLEFMEAVDVHCHSN-VNNSNPTIF--KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~-~~~~~~~~~--~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k 130 (367)
T Consensus 513 GQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~------hsvsr 586 (823)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK------HTVSK 586 (823)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC------CCHHH
T ss_conf 769999999999999970899899974689987899887799999999997478202588535101554------20767
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99862312112333321000123332211113457761266210135445565210113586289997545599889999
Q gi|254781187|r 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 (367)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~ 210 (367)
T Consensus 587 LIGaPP-----------------G------YVGy~eGG~----------LTeaVr--r~Py-sVvLfDEIEKAHpdV~ni 630 (823)
T CHL00095 587 LIGSPP-----------------G------YVGYNEGGQ----------LTEAVR--KKPY-TVVLFDEIEKAHPDIFNL 630 (823)
T ss_pred HCCCCC-----------------C------CCCCCCCCC----------HHHHHH--CCCC-EEEEECHHHHCCHHHHHH
T ss_conf 458998-----------------7------667787882----------019887--1998-699862131138899998
Q ss_pred HH-----HHHHCCCCCE
Q ss_conf 89-----8740698825
Q gi|254781187|r 211 IL-----GFFTELNPNR 222 (367)
Q Consensus 211 i~-----g~Lt~~~~~~ 222 (367)
T Consensus 631 lLQvlDdG~LtD~~Gr~ 647 (823)
T CHL00095 631 LLQILDDGRLTDSKGRT 647 (823)
T ss_pred HHHHCCCCCCCCCCCCE
T ss_conf 87651688434899998