HHsearch alignment for GI: 254781187 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=98.71  E-value=1e-06  Score=60.14  Aligned_cols=162  Identities=18%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r   48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE  127 (367)
Q Consensus        48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e  127 (367)
T Consensus        34 ~~~lr~yQ~~al~a~~~~~~~-~~-------~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~-~~   99 (442)
T COG1061          34 EFELRPYQEEALDALVKNRRT-ER-------RGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWA-EA   99 (442)
T ss_pred             CCCCHHHHHHHHHHHHHHCCC-CC-------CEEEEECCCCCHHHHHHHHHHHHC-----CCEEEEECCHHHHHHHH-HH
T ss_conf             788859999999999962225-78-------679996799988999999999826-----98899978299999999-99


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf             99999862312112333321000123332211113457761266210135445565210113586289997545599889
Q gi|254781187|r  128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII  207 (367)
Q Consensus       128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i  207 (367)
T Consensus       100 ~~~~~~~~~~----------~----g~~~~~~~~~~~-~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~  162 (442)
T COG1061         100 LKKFLLLNDE----------I----GIYGGGEKELEP-AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS  162 (442)
T ss_pred             HHHHCCCCCC----------C----CEECCCCCCCCC-CCEEEEEEHHHHHHH--HHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             9973488676----------6----033687233577-748999838976415--5554035666759997524578477


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHH
Q ss_conf             999898740698825899980789998-76887541
Q gi|254781187|r  208 NKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFN  242 (367)
Q Consensus       208 ~e~i~g~Lt~~~~~~~~i~igNP~r~~-g~Fye~~~  242 (367)
T Consensus       163 ~~~~~~~~~~~~~--~LGLTATp~R~D~~~~~~l~~  196 (442)
T COG1061         163 YRRILELLSAAYP--RLGLTATPEREDGGRIGDLFD  196 (442)
T ss_pred             HHHHHHHHHCCCE--EEEEECCCCCCCCCCHHHHHH
T ss_conf             9999997510310--467714872448775248774