HHsearch alignment for GI: 254781187 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=98.71 E-value=1e-06 Score=60.14 Aligned_cols=162 Identities=18% Similarity=0.143 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~-~~-------~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~-~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRT-ER-------RGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWA-EA 99 (442)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-CC-------CEEEEECCCCCHHHHHHHHHHHHC-----CCEEEEECCHHHHHHHH-HH
T ss_conf 788859999999999962225-78-------679996799988999999999826-----98899978299999999-99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99999862312112333321000123332211113457761266210135445565210113586289997545599889
Q gi|254781187|r 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 (367)
Q Consensus 128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i 207 (367)
T Consensus 100 ~~~~~~~~~~----------~----g~~~~~~~~~~~-~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 100 LKKFLLLNDE----------I----GIYGGGEKELEP-AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred HHHHCCCCCC----------C----CEECCCCCCCCC-CCEEEEEEHHHHHHH--HHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 9973488676----------6----033687233577-748999838976415--5554035666759997524578477
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHH
Q ss_conf 999898740698825899980789998-76887541
Q gi|254781187|r 208 NKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFN 242 (367)
Q Consensus 208 ~e~i~g~Lt~~~~~~~~i~igNP~r~~-g~Fye~~~ 242 (367)
T Consensus 163 ~~~~~~~~~~~~~--~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 163 YRRILELLSAAYP--RLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred HHHHHHHHHCCCE--EEEEECCCCCCCCCCHHHHHH
T ss_conf 9999997510310--467714872448775248774