HHsearch alignment for GI: 254781187 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=95.33  E-value=0.2  Score=27.67  Aligned_cols=82  Identities=21%  Similarity=0.277  Sum_probs=61.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf             88443666842899999998888751245555541124776148867889999999999997089977999715379999
Q gi|254781187|r   42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK  121 (367)
Q Consensus        42 ~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~  121 (367)
T Consensus       258 ~LPF----~LT~aQ~~vi~EI~~Dl~~~~-----~M~RL-lQGDVGSGKTvVA~laml~a-i-~~G~Q~ALMAPTEILA~  325 (677)
T COG1200         258 ALPF----KLTNAQKRVIKEILADLASPV-----PMNRL-LQGDVGSGKTVVALLAMLAA-I-EAGYQAALMAPTEILAE  325 (677)
T ss_pred             HCCC----CCCHHHHHHHHHHHHHHCCCH-----HHHHH-HCCCCCCCHHHHHHHHHHHH-H-HCCCEEEEECCHHHHHH
T ss_conf             5899----767899999999986644866-----66787-52676777899999999999-8-72881688663799999


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999999999998623
Q gi|254781187|r  122 NTLWAEVSKWLSMLP  136 (367)
Q Consensus       122 ~~lw~ei~k~~~~~~  136 (367)
T Consensus       326 Q-H~~~~~~~l~~~~  339 (677)
T COG1200         326 Q-HYESLRKWLEPLG  339 (677)
T ss_pred             H-HHHHHHHHHHHCC
T ss_conf             9-9999998766519