HHsearch alignment for GI: 254781187 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=95.33 E-value=0.2 Score=27.67 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 88443666842899999998888751245555541124776148867889999999999997089977999715379999
Q gi|254781187|r 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 (367)
Q Consensus 42 ~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~ 121 (367)
T Consensus 258 ~LPF----~LT~aQ~~vi~EI~~Dl~~~~-----~M~RL-lQGDVGSGKTvVA~laml~a-i-~~G~Q~ALMAPTEILA~ 325 (677)
T COG1200 258 ALPF----KLTNAQKRVIKEILADLASPV-----PMNRL-LQGDVGSGKTVVALLAMLAA-I-EAGYQAALMAPTEILAE 325 (677)
T ss_pred HCCC----CCCHHHHHHHHHHHHHHCCCH-----HHHHH-HCCCCCCCHHHHHHHHHHHH-H-HCCCEEEEECCHHHHHH
T ss_conf 5899----767899999999986644866-----66787-52676777899999999999-8-72881688663799999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999998623
Q gi|254781187|r 122 NTLWAEVSKWLSMLP 136 (367)
Q Consensus 122 ~~lw~ei~k~~~~~~ 136 (367)
T Consensus 326 Q-H~~~~~~~l~~~~ 339 (677)
T COG1200 326 Q-HYESLRKWLEPLG 339 (677)
T ss_pred H-HHHHHHHHHHHCC
T ss_conf 9-9999998766519