HHsearch alignment for GI: 254781187 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=96.58 E-value=0.023 Score=33.53 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=60.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEECCCHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089------9779997153799
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQ 119 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~------~~~v~~~A~t~~Q 119 (367)
T Consensus 18 ~~~~~~t~~Q~~a~~~i~~G~------------nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 18 RKFTSLTPPQRYAIPEIHSGE------------NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred HHCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHH
T ss_conf 850899878999999985898------------46998689997379999999999986068888885699995707888
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998623
Q gi|254781187|r 120 LKNTLWAEVSKWLSMLP 136 (367)
Q Consensus 120 ~~~~lw~ei~k~~~~~~ 136 (367)
T Consensus 86 n~Di~-~rL~~~~~~~G 101 (814)
T COG1201 86 NNDIR-RRLEEPLRELG 101 (814)
T ss_pred HHHHH-HHHHHHHHHCC
T ss_conf 78999-99999999759