HHsearch alignment for GI: 254781187 and conserved domain: COG1783
>COG1783 XtmB Phage terminase large subunit [General function prediction only].
Probab=99.24 E-value=6.3e-10 Score=79.85 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=163.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47761488678899999999999970899779997153799999999999999986231211233332100012333221
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (367)
T Consensus 27 ~i-~~G~rGS~KSy~~alk~i~kl~~~~~~d~lvIR~v~nt~k~St~~~~~e~l~e~gv~~~f~~~~s-----------~ 94 (414)
T COG1783 27 FI-AKGGRGSSKSYATALKNIEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKISKS-----------S 94 (414)
T ss_pred EE-EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----------C
T ss_conf 99-98267775008889999999970778757999972354412089999999998384011577417-----------8
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-HHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCH
Q ss_conf 1113457761266210135445565210113586289997545599-8899998987-4069882589998078999876
Q gi|254781187|r 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGF-FTELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 159 ~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~-d~i~e~i~g~-Lt~~~~~~~~i~igNP~r~~g~ 236 (367)
T Consensus 95 pe~i~~~~G~ri~F~G---~ddp~klKSi~~~~~s~~WfEE~~e~s~e~~~e~l~~l~~~~~~~~--~~~~snpv~~~pw 169 (414)
T COG1783 95 PEIILKDTGQRIIFKG---LDDPAKLKSIAVNWISDLWFEEASEFSYEDDIELLVELRRRELKGH--IILSSNPVSFNPW 169 (414)
T ss_pred HHHEECCCCCEEEEEC---CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CEEECCCCCCCCC
T ss_conf 6660212586789945---8987885230100433555787763303456888777641223777--2463264345885
Q ss_pred HHHHHHC------CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEE------CHHHHHH
Q ss_conf 8875411------223504675233328888988999999621688000268886443277898078------2999864
Q gi|254781187|r 237 FYDIFNI------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI------PHNYIEE 304 (367)
Q Consensus 237 Fye~~~~------~~~~w~~~~~~~~d~p~~~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~~d~~i------p~~~ie~ 304 (367)
T Consensus 170 ~~~~w~~~~~Dek~~~dt~~hhtT~~dn~fL~~~~v~~~ed~k~~d~d~yri~~~gev~v-~~~~v~~~~e~~~~d~v~~ 248 (414)
T COG1783 170 TYKHWLEFAVDEKKKADTYIHHTTYRDNLFLGFDDVDELEDLKKNDPDLYRIVRDGEVGV-KNGDVFDQFEVKPFDAVKF 248 (414)
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEE-CCCEECCHHHCCCHHHHHH
T ss_conf 388888887443557866888620135666777899999876412854123899778986-0752546321577288776
Q ss_pred HHCCCCCCCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 43157777889848999963877881089999
Q gi|254781187|r 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 (367)
Q Consensus 305 a~~~~~~~~~~~p~viGvDvAr~G~D~Tvi~~ 336 (367)
T Consensus 249 ~i~~i~~~------s~gm~~-Gf~~~~n~l~~ 273 (414)
T COG1783 249 AIDNISRP------STGMDF-GFTAKFNRLLK 273 (414)
T ss_pred HHHHHCCC------CCCCEE-EEEECCCEEEE
T ss_conf 67761556------554024-25740757788