HHsearch alignment for GI: 254781187 and conserved domain: COG1875
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].
Probab=96.94 E-value=0.0015 Score=40.71 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 899999998888751245555541124776148867889999999999997089-9779997153799999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
T Consensus 231 ~eQ~~ALdlLld----------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGf------ 294 (436)
T COG1875 231 AEQRVALDLLLD----------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGF------ 294 (436)
T ss_pred HHHHHHHHHHCC----------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC------
T ss_conf 888888998638----------7778488633577667699999899999877543027883377677531376------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCC--CCEEEEECCCCCC
Q ss_conf 98623121123333210001233322----1111345776126621013-544556521011358--6289997545599
Q gi|254781187|r 132 LSMLPHRHWFEMQSLSLHPSGWYAEL----LEQSMGIDSKHYTITCRTY-SEERPDTFVGPHNTH--GMAVFNDEASGTP 204 (367)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~-~~~~~ea~~g~h~~~--~~l~ivDEAsgI~ 204 (367)
T Consensus 295 ---LP-------G~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 295 ---LP-------GTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred ---CC-------CCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEEEHHHCCC
T ss_conf ---88-------84366506157676667998726665536789988741542566520131665553069971212178
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH
Q ss_conf 889999898740698825899980789998768
Q gi|254781187|r 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 (367)
Q Consensus 205 d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~F 237 (367)
T Consensus 365 pheikTilt-R~G~GsK--IVl~gd~aQiD~~y 394 (436)
T COG1875 365 PHELKTILT-RAGEGSK--IVLTGDPAQIDTPY 394 (436)
T ss_pred HHHHHHHHH-HHCCCCE--EEEECCHHHCCCCC
T ss_conf 888899987-6069977--99808988827754