HHsearch alignment for GI: 254781187 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=92.16 E-value=0.82 Score=23.96 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 20 GQe~v~~~L~nal~~~ri-~hAY----lfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC-----~~C~-~C-k~I~~g-- 85 (515)
T COG2812 20 GQEHVVKTLSNALENGRI-AHAY----LFSGPRGVGKTTIARILAKALNCENGPTAEPC-----GKCI-SC-KEINEG-- 85 (515)
T ss_pred CCHHHHHHHHHHHHHCCC-HHHH----HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC-----HHHH-HH-HHHHCC--
T ss_conf 648999999999980842-3336----51377776710499999999568898777722-----5316-66-865148--
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 86 ~~-------------------~Dv--iEiDaASn~gVddiR~i~e~--v~y~P~~~ryK-VyiIDEvHMLS~~afNALLK 141 (515)
T COG2812 86 SL-------------------IDV--IEIDAASNTGVDDIREIIEK--VNYAPSEGRYK-VYIIDEVHMLSKQAFNALLK 141 (515)
T ss_pred CC-------------------CCC--HHHHHHHCCCHHHHHHHHHH--HCCCCCCCCCE-EEEEECHHHHHHHHHHHHHC
T ss_conf 86-------------------410--11364445486799999987--24688666641-89983187643788888751
Q ss_pred HHHCCCCCEEEE
Q ss_conf 740698825899
Q gi|254781187|r 214 FFTELNPNRFWI 225 (367)
Q Consensus 214 ~Lt~~~~~~~~i 225 (367)
T Consensus 142 TLEEPP~hV~FI 153 (515)
T COG2812 142 TLEEPPSHVKFI 153 (515)
T ss_pred CCCCCCCCEEEE
T ss_conf 113686674899