HHsearch alignment for GI: 254781187 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=97.25 E-value=0.015 Score=34.67 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~e------------sVlV~ApTssGKTvV-aeyAi~~al~~-~qrviYTsPIKALsNQK-yr 180 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGE------------SVLVCAPTSSGKTVV-AEYAIALALRD-GQRVIYTSPIKALSNQK-YR 180 (1041)
T ss_pred CCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCHH-HHHHHHHHHHC-CCCEEECCCHHHHHHHH-HH
T ss_conf 89896789999999984799------------579973378985559-99999999871-89448616306642067-99
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC-----CCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 9999998623121123333210001233322111134577612662101-----35445565210113586289997545
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT-----YSEERPDTFVGPHNTHGMAVFNDEAS 201 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~~~ea~~g~h~~~~~l~ivDEAs 201 (367)
T Consensus 181 dl~~~fgdv-~~~vGL~T---------------GDv~IN~~A~clvMTTEILRnMlyrg~~~~~-----~i~~ViFDEvH 239 (1041)
T COG4581 181 DLLAKFGDV-ADMVGLMT---------------GDVSINPDAPCLVMTTEILRNMLYRGSESLR-----DIEWVVFDEVH 239 (1041)
T ss_pred HHHHHHHHH-HHHCCCEE---------------CCEEECCCCCEEEEEHHHHHHHHCCCCCCCC-----CCCEEEEEEEE
T ss_conf 999986005-65404010---------------5434279996688609999998625861013-----53068887666
Q ss_pred CCCH----HHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 5998----899998987406988258999807899987688754112
Q gi|254781187|r 202 GTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 (367)
Q Consensus 202 gI~d----~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~ 244 (367)
T Consensus 240 yi~D~eRG~VWEE~Ii~lP~~-v~--~v~LSATv~N~~EF~~Wi~~~ 283 (1041)
T COG4581 240 YIGDRERGVVWEEVIILLPDH-VR--FVFLSATVPNAEEFAEWIQRV 283 (1041)
T ss_pred ECCCCCCCHHHHHHHHHCCCC-CC--EEEEECCCCCHHHHHHHHHHC
T ss_conf 504632212578999866777-76--899967889879999999740