HHsearch alignment for GI: 254781187 and conserved domain: COG4626
>COG4626 Phage terminase-like protein, large subunit [General function prediction only].
Probab=99.39 E-value=3.2e-10 Score=81.66 Aligned_cols=306 Identities=15% Similarity=0.116 Sum_probs=171.5
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCC--CCHH--HHHHHHHCCCCC---------CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9755545723378999975232012--5988--885543014668---------88443666842899999998888751
Q gi|254781187|r 1 MPRLISTDQKLEQELHEMLMHAECV--LSFK--NFVMRFFPWGIK---------GKPLEHFSQPHRWQLEFMEAVDVHCH 67 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~f~~~~~~w~~~---------~~~~~~~~~p~~wq~~~l~~~~~~~~ 67 (367)
T Consensus 7 ~dg~~~a~~~~k~a~kr~~--~DL~~~~~~e~~~~~i~~~e--~~~~~~~~~~~~~p~----~l~PwQkFiia~l~G~~~ 78 (546)
T COG4626 7 IDGWITACKDWKQAAKRHL--SDLPAPIYPEQAERAIAIFE--QLRIVDGPGSPGFPE----SLEPWQKFIVAALFGFYD 78 (546)
T ss_pred CCCCCCCCHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHH--HCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHEEE
T ss_conf 4773125788999999777--74104247555236665544--002103677789863----435189999998760350
Q ss_pred CCCCCCCCCEEEE-EEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2455555411247-76148867889999999999997089--97799971537999999999999999862312112333
Q gi|254781187|r 68 SNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 (367)
Q Consensus 68 ~~~~~~~~~~~~~-~v~sgrg~GKS~~~a~~~lw~~~~~~--~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~ 144 (367)
T Consensus 79 k~T~~---rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~-~F~~ar~mv~~~~~l------ 148 (546)
T COG4626 79 KQTGI---RRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAAN-SFNPARDMVKRDDDL------ 148 (546)
T ss_pred CCCCE---EEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHHHHHCCCH------
T ss_conf 57870---68889999974578557899999999987653047608998342899988-768999998737213------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCE
Q ss_conf 3210001233322111134577612662101354455652101135862899975455998--89999898740698825
Q gi|254781187|r 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNR 222 (367)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d--~i~e~i~g~Lt~~~~~~ 222 (367)
T Consensus 149 --~~~~~---~~~~s~~i~~~~~~s~ik~~aa---~~~~~Dg~~---~~~~I~DEih~f~~~~~~~~~~~~g~~ar~~~- 216 (546)
T COG4626 149 --RDLCN---VQTHSRTITHRKTDSTIKAVAA---DPNTVDGLN---SVGAIIDELHLFGKQEDMYSEAKGGLGARPEG- 216 (546)
T ss_pred --HHHCC---CCCCEEEEEECCCCEEEEEHHC---CCCCCCCCC---CCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCC-
T ss_conf --33206---5454048986155111330104---887556787---65488763754167899999997420157676-
Q ss_pred EEEEEECC-CCCCCHHHHHHHCCC---CC-------EE-EEEECCC-----------CCCCCC----HHHHHH-HHHHCC
Q ss_conf 89998078-999876887541122---35-------04-6752333-----------288889----889999-996216
Q gi|254781187|r 223 FWIMTSNT-RRLNGWFYDIFNIPL---ED-------WK-RYQIDTR-----------TVEGID----SGFHEG-IISRYG 274 (367)
Q Consensus 223 ~~i~igNP-~r~~g~Fye~~~~~~---~~-------w~-~~~~~~~-----------d~p~~~----~~~i~~-~~~~~g 274 (367)
T Consensus 217 l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f~~i~e~Dd~~e~~dpe~w~kaNPnlg~sv~~~~l~s~~~ka~~ 296 (546)
T COG4626 217 LVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPHFFPVIYELDEEGEHDDPENWAKANPNLGVSVDEAFLYSEYRKARN 296 (546)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHC
T ss_conf 39999668988741899999999998669878821079999768820003867774308876514207777769998731
Q ss_pred CC--CCEEEEEEEEEECCCCCCEEECHHHHHHHHCC--CCCCCCCCCEEEEEECCCCCCCEEEEEE--EC
Q ss_conf 88--00026888644327789807829998644315--7777889848999963877881089999--70
Q gi|254781187|r 275 LD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVF--RR 338 (367)
Q Consensus 275 ed--S~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~--~~~~~~~~p~viGvDvAr~G~D~Tvi~~--r~ 338 (367)
T Consensus 297 ~~q~~~dF~tK~lNi~~~~-~~~~~~~~~w~~~~~~~lde~~~~gq~c~~G~Dls~~-~D~ts~al~f~~ 364 (546)
T COG4626 297 APQEARDFMTKHLNIWIGA-SDAWFGADFWEQQGRTVLDEILLRGQVCYGGIDLSGL-DDLTSMALVGRY 364 (546)
T ss_pred CCHHCHHHHHCCCCEEECH-HHCCCCHHHHHHHCCCCCCHHHHCCCEEEEEECCCCC-CCCCCEEEEEEC
T ss_conf 8111227775123315100-1024686899973144565355148668997332345-555410688753