HHsearch alignment for GI: 254781187 and conserved domain: COG5410
>COG5410 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=90.83 E-value=0.84 Score=23.89 Aligned_cols=187 Identities=15% Similarity=0.089 Sum_probs=88.0
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 54572337899997523201259888855430146688844366684289999999888875124555554112477614
Q gi|254781187|r 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~s 84 (367)
T Consensus 3 ~~~~~~~~EaL~~~L----~~~~h~f~~r~f~T~~~~~-~Y-~---~-~~H~~iI~~~L~~Vi~G~------~k~~Iin~ 66 (305)
T COG5410 3 RSTEQAQEEALIKAL----CEADHLFFTRYFFTQRQQL-RY-R---V-NWHHHVIAGVLDDVIAGR------RKDVIINV 66 (305)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHHEECCCC-EE-C---C-HHHHHHHHHHHHHHHCCC------CEEEEEEC
T ss_conf 203777799999999----9999988867652116653-00-2---1-155799998888886363------10489966
Q ss_pred CCCCCHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 886788999999-9999997089977999715379999999999999-99862312112333321000123332211113
Q gi|254781187|r 85 GRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 (367)
Q Consensus 85 grg~GKS~~~a~-~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
T Consensus 67 PP~~skS~~Vs~~~PaY~L~~NP~KR~~~~SYSd--~La~~~s~~~r~ii~sd~y~~LFp~~I~-----~~~~~~k~w~i 139 (305)
T COG5410 67 PPGSSKSELVAINVPAYGLALNPYKRFLHISYSD--DLALLNSETAREIVQSDEYRALFPLEIA-----DDAKSKKRWNV 139 (305)
T ss_pred CCCCCCCEEEEEECCHHEEEECCCCEEEEEEHHH--HHHHHHCHHHHHHHHCCCHHHCCCEEEC-----CCCCCCCCEEE
T ss_conf 9852323478850541125507633189854767--8998834467898722103320763204-----67667632368
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC--------CCHHHHHHHHHHH----HCCCCCEE
Q ss_conf 4577612662101354455652101135862899975455--------9988999989874----06988258
Q gi|254781187|r 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--------TPDIINKSILGFF----TELNPNRF 223 (367)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsg--------I~d~i~e~i~g~L----t~~~~~~~ 223 (367)
T Consensus 140 ~~~gGg~yaTs~g---------G~ATG~GaD~LIIDDP~k~e~a~SktIR~K~Yr~~~st~~sr~~~~~s~ii 203 (305)
T COG5410 140 VVDGGGVYATSLG---------GQATGFGADALIIDDPLKVEDAYSKTIRSKAYRKLVSTVKSRKASPDTPII 203 (305)
T ss_pred EEECCEEEEEECC---------CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 9428878887305---------654577874698659988777545689999999999998753038997189